BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026791
         (233 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
           Archaeoglobus Fulgidus
 pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
           Archaeoglobus Fulgidus
          Length = 335

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 120 SNITSSIKSLYGNHLEVALRDCVDQLRDASSRLNDSMSELNATLTDRTVNDIQTWISAAM 179
           + ITS++K++Y           +  +R   SR N  MS     +  R +N++   I    
Sbjct: 185 TEITSALKNVY--------SIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILG 236

Query: 180 TDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAI 217
            D ET   GL   G  +A           ELL   L+I
Sbjct: 237 GDRETAF-GLSGFGDLIATFRGGRNGMLGELLGKGLSI 273


>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
 pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
          Length = 208

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 136 VALRDCVDQLRDASSRLNDSMSELNATLTDRTVNDIQTWI 175
           V L DC D      SRL +S  ELNA +TD T++++   I
Sbjct: 107 VFLVDCADH-----SRLVESKVELNALMTDETISNVPILI 141


>pdb|1X8Z|A Chain A, Crystal Structure Of A Pectin Methylesterase Inhibitor
           From Arabidopsis Thaliana
 pdb|1X8Z|B Chain B, Crystal Structure Of A Pectin Methylesterase Inhibitor
           From Arabidopsis Thaliana
 pdb|1X8Z|C Chain C, Crystal Structure Of A Pectin Methylesterase Inhibitor
           From Arabidopsis Thaliana
          Length = 153

 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 22/159 (13%)

Query: 66  LDAAESIKTVCSVTQNPDSCFXXXXXXXXXXXXXXKPDPEVILKLSLQVNVNHFSNITSS 125
           +D++E + T+C  T NP  C                P+ + + K +L       +     
Sbjct: 3   MDSSE-MSTICDKTLNPSFCLKFLNTKFAS------PNLQALAKTTLDSTQARATQTLKK 55

Query: 126 IKSLYGNHLE----VALRDCVDQLRDASSRLNDSMSELNATLTDRTVNDIQTWISAAMTD 181
           ++S+    ++    +A R CVD+   A   L ++   L A+     +N     +SAA+  
Sbjct: 56  LQSIIDGGVDPRSKLAYRSCVDEYESAIGNLEEAFEHL-ASGDGMGMN---MKVSAALDG 111

Query: 182 EETCLDG---LEEMGSTVADEVKTMMKKSKELLSYSLAI 217
            +TCLD    L  + S+V +  KT+    K L   +L I
Sbjct: 112 ADTCLDDVKRLRSVDSSVVNNSKTI----KNLCGIALVI 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.130    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,286,017
Number of Sequences: 62578
Number of extensions: 155936
Number of successful extensions: 537
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 9
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)