Query 026791
Match_columns 233
No_of_seqs 192 out of 797
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 22:16:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 2.7E-34 9.3E-39 229.0 14.4 145 69-222 3-151 (153)
2 1x91_A Invertase/pectin methyl 100.0 1.1E-33 3.8E-38 225.8 14.4 142 69-221 5-150 (153)
3 2cj4_A Invertase inhibitor; pr 100.0 8.2E-33 2.8E-37 220.2 13.6 142 68-221 3-149 (150)
4 1spf_A Pulmonary surfactant-as 64.7 7 0.00024 22.2 3.0 22 28-50 10-31 (35)
5 3dxr_B Mitochondrial import in 33.2 1.3E+02 0.0043 21.2 6.7 28 131-158 57-84 (95)
6 3hd7_B Syntaxin-1A; membrane p 27.9 33 0.0011 24.7 2.3 12 40-51 97-108 (109)
7 1r7c_A Genome polyprotein; mem 24.3 43 0.0015 18.7 1.8 12 168-179 16-27 (31)
8 3p5s_A CD38 molecule; cyclic A 22.5 18 0.00063 30.8 0.0 22 33-54 11-32 (278)
9 2wb7_A PT26-6P; extra chromoso 21.4 4.8E+02 0.017 24.0 11.7 79 104-190 411-492 (526)
10 3dxr_A Mitochondrial import in 19.1 2.3E+02 0.0079 19.4 6.5 59 100-158 7-78 (89)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=2.7e-34 Score=228.98 Aligned_cols=145 Identities=22% Similarity=0.319 Sum_probs=132.2
Q ss_pred hHHHHccCCCCCChhchhHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh----hchhhHHHHHHHHHH
Q 026791 69 AESIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVNVNHFSNITSSIKSL----YGNHLEVALRDCVDQ 144 (233)
Q Consensus 69 ~~~i~~~C~~T~yp~~C~~sL~~~~~s~~~~~~~~~~~l~~~sl~~t~~~~~~a~~~~~~l----~d~~~k~AL~dC~el 144 (233)
.+.|+.+|+.|+||++|+++|.++|++ ..++|++|+++++++++.++..+...+.++ .+++.+.||+||.|+
T Consensus 3 ~~~i~~~C~~T~~~~~C~~sL~~~~~~----~~~~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~dC~e~ 78 (153)
T 1xg2_B 3 NHLISEICPKTRNPSLCLQALESDPRS----ASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQATDPKLKGRYETCSEN 78 (153)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHTCTTG----GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HhHHHHHhcCCCChHHHHHHHhhCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999876 567999999999999999999999999887 478999999999999
Q ss_pred HHHHHHHHHHhHHhhhhcccccChhhHHHHHHHHhccHHHHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026791 145 LRDASSRLNDSMSELNATLTDRTVNDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANIR 222 (233)
Q Consensus 145 ~~~a~d~L~~s~~~~~~~~~~~~~~D~~twLSAAlt~q~TC~Dgf~~~~~~~~~~l~~~~~~~~~L~SNaLAiv~~~~ 222 (233)
|++++++|++++.+++ .++++|+++|||+|+||++||+|||.+. +.++++|...+.++.+|++|+|+|++.+.
T Consensus 79 y~~a~~~L~~a~~~l~----~~~~~d~~t~lSaAlt~~~tC~dgf~~~-~~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1xg2_B 79 YADAIDSLGQAKQFLT----SGDYNSLNIYASAAFDGAGTCEDSFEGP-PNIPTQLHQADLKLEDLCDIVLVISNLLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHHCCSS-SCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHhcccchHHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999854 4568999999999999999999999875 25678999999999999999999998764
No 2
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=1.1e-33 Score=225.81 Aligned_cols=142 Identities=23% Similarity=0.393 Sum_probs=128.6
Q ss_pred hHHHHccCCCCCChhchhHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh----hchhhHHHHHHHHHH
Q 026791 69 AESIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVNVNHFSNITSSIKSL----YGNHLEVALRDCVDQ 144 (233)
Q Consensus 69 ~~~i~~~C~~T~yp~~C~~sL~~~~~s~~~~~~~~~~~l~~~sl~~t~~~~~~a~~~~~~l----~d~~~k~AL~dC~el 144 (233)
.+.|+.+|+.|+||++|+++| .|.+ ...+|++|+++++++++.++..+...+.++ .+++.+.||+||.|+
T Consensus 5 ~~~i~~~C~~T~~~~~C~~sL--~p~~----~~~~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~~~~~~~~~al~dC~e~ 78 (153)
T 1x91_A 5 SSEMSTICDKTLNPSFCLKFL--NTKF----ASANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSKLAYRSCVDE 78 (153)
T ss_dssp CCSTTTGGGGSSCHHHHHHHH--HHTT----CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChhHHHHHh--CcCc----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 357889999999999999999 5554 457999999999999999999999999887 478999999999999
Q ss_pred HHHHHHHHHHhHHhhhhcccccChhhHHHHHHHHhccHHHHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026791 145 LRDASSRLNDSMSELNATLTDRTVNDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANI 221 (233)
Q Consensus 145 ~~~a~d~L~~s~~~~~~~~~~~~~~D~~twLSAAlt~q~TC~Dgf~~~~~~~~~~l~~~~~~~~~L~SNaLAiv~~~ 221 (233)
|++++++|++++.+++ .++++|+++|||+|+||++||+|||.+.+ .++++|...+.++.+|++|+|+|++.+
T Consensus 79 y~~a~~~L~~a~~~l~----~~~~~d~~t~lSaAlt~~~tC~dgf~~~~-~~~~~l~~~~~~~~~l~s~aLai~~~l 150 (153)
T 1x91_A 79 YESAIGNLEEAFEHLA----SGDGMGMNMKVSAALDGADTCLDDVKRLR-SVDSSVVNNSKTIKNLCGIALVISNML 150 (153)
T ss_dssp HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHccHhHHHHHhccCC-CCcCHHHHHhHHHHHHHHHHHHHHHHc
Confidence 9999999999999854 45699999999999999999999998752 578899999999999999999999875
No 3
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=8.2e-33 Score=220.22 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=128.0
Q ss_pred hhHHHHccCCCCCChhchhHHhccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh----hchhhHHHHHHHHH
Q 026791 68 AAESIKTVCSVTQNPDSCFTALSSSLNISSTTTKPDPEVILKLSLQVNVNHFSNITSSIKSL----YGNHLEVALRDCVD 143 (233)
Q Consensus 68 ~~~~i~~~C~~T~yp~~C~~sL~~~~~s~~~~~~~~~~~l~~~sl~~t~~~~~~a~~~~~~l----~d~~~k~AL~dC~e 143 (233)
..+.|+.+|+.|+||++|+++|+++|++ ..++|++|+++++++++.++..+...+.++ .+++.+.||+||.|
T Consensus 3 ~~~~I~~~C~~T~~~~~C~~sL~~~~~s----~~ad~~~la~~ai~~~~~~a~~~~~~i~~l~~~~~~~~~~~al~dC~e 78 (150)
T 2cj4_A 3 MNNLVETTCKNTPNYQLCLKTLLSDKRS----ATGDITTLALIMVDAIKAKANQAAVTISKLRHSNPPAAWKGPLKNCAF 78 (150)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHTSGGG----TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGHHHHHHHHH
T ss_pred chHHHHHHHcCCCCccHHHHHHhcCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4578999999999999999999999886 567999999999999999999999999887 47889999999999
Q ss_pred HHHHHH-HHHHHhHHhhhhcccccChhhHHHHHHHHhccHHHHHHhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026791 144 QLRDAS-SRLNDSMSELNATLTDRTVNDIQTWISAAMTDEETCLDGLEEMGSTVADEVKTMMKKSKELLSYSLAIIANI 221 (233)
Q Consensus 144 l~~~a~-d~L~~s~~~~~~~~~~~~~~D~~twLSAAlt~q~TC~Dgf~~~~~~~~~~l~~~~~~~~~L~SNaLAiv~~~ 221 (233)
+|++++ ++|++++.+++ .++++|+++|||+|+||++||+|||.+. +++|...+.++.+|++|+|+|++.+
T Consensus 79 ~y~~a~~~~L~~a~~~l~----~~~~~~~~t~lsaAlt~~~tC~dgf~~~----~~pl~~~~~~~~~l~s~aLaii~~l 149 (150)
T 2cj4_A 79 SYKVILTASLPEAIEALT----KGDPKFAEDGMVGSSGDAQECEEYFKGS----KSPFSALNIAVHELSDVGRAIVRNL 149 (150)
T ss_dssp HHHHHHHTHHHHHHHHHH----HSCHHHHHHHHHHHHHHHHHHHHTTTTS----CCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHHhhCCC----CCccHHHHHHHHHHHHHHHHHHHhh
Confidence 999999 79999998854 4579999999999999999999999742 4568889999999999999999864
No 4
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=64.70 E-value=7 Score=22.21 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=14.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHh
Q 026791 28 HQRLKTAVTISAIVLLTLIIGLM 50 (233)
Q Consensus 28 ~k~~~~i~~~s~illv~~~~~~~ 50 (233)
-||+ ++..+..++++.+++|+.
T Consensus 10 lKrL-livVvVvVlvVvVivGaL 31 (35)
T 1spf_A 10 LKRL-LVVVVVVVLVVVVIVGAL 31 (35)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hheE-EEEEeeehhhHHHHHHHH
Confidence 3677 666666666666666654
No 5
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=33.18 E-value=1.3e+02 Score=21.19 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHHh
Q 026791 131 GNHLEVALRDCVDQLRDASSRLNDSMSE 158 (233)
Q Consensus 131 d~~~k~AL~dC~el~~~a~d~L~~s~~~ 158 (233)
+..+..|+..|.+-|-++-..+.+.+..
T Consensus 57 ~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~ 84 (95)
T 3dxr_B 57 NKNESSCLDRCVAKYFETNVQVGENMQK 84 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999988887776
No 6
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=27.91 E-value=33 Score=24.73 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhh
Q 026791 40 IVLLTLIIGLML 51 (233)
Q Consensus 40 illv~~~~~~~~ 51 (233)
++++++++|..+
T Consensus 97 ~~i~~~~~~~~~ 108 (109)
T 3hd7_B 97 GIIIASTIGGIF 108 (109)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHhcccc
Confidence 334666776543
No 7
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=24.29 E-value=43 Score=18.73 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHh
Q 026791 168 VNDIQTWISAAM 179 (233)
Q Consensus 168 ~~D~~twLSAAl 179 (233)
..|.+|||+|-+
T Consensus 16 LsDfktWlkaki 27 (31)
T 1r7c_A 16 LSDFKTWLKAKL 27 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 346666666644
No 8
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=22.45 E-value=18 Score=30.78 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhheee
Q 026791 33 TAVTISAIVLLTLIIGLMLAVL 54 (233)
Q Consensus 33 ~i~~~s~illv~~~~~~~~~~~ 54 (233)
+...+.++||+++++++++++.
T Consensus 11 ~~l~~~~~~l~~~~~~~~~~~~ 32 (278)
T 3p5s_A 11 LCWCVLLFFLVAGITGGAIGIY 32 (278)
T ss_dssp ----------------------
T ss_pred EeehHHHHHHHHHHHhheeeEE
Confidence 3345556666666666666543
No 9
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=21.42 E-value=4.8e+02 Score=24.02 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh---hchhhHHHHHHHHHHHHHHHHHHHHhHHhhhhcccccChhhHHHHHHHHhc
Q 026791 104 PEVILKLSLQVNVNHFSNITSSIKSL---YGNHLEVALRDCVDQLRDASSRLNDSMSELNATLTDRTVNDIQTWISAAMT 180 (233)
Q Consensus 104 ~~~l~~~sl~~t~~~~~~a~~~~~~l---~d~~~k~AL~dC~el~~~a~d~L~~s~~~~~~~~~~~~~~D~~twLSAAlt 180 (233)
.+..+...++-..++...|-....+. .+.....+.+--.+-|+.|++.|+.... ..+..+++.|+-.|-.
T Consensus 411 ik~i~~s~i~sL~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~-------tdd~~~v~~~~~~ak~ 483 (526)
T 2wb7_A 411 INATTKAMINSLQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKAAQ-------QDDYQMFLNYLNAAKK 483 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTT-------CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhc-------cCCHHHHHHHHHHhhh
Confidence 44555555555555554444444443 2344455666667778888887766553 4678999999999887
Q ss_pred cHHHHHHhhh
Q 026791 181 DEETCLDGLE 190 (233)
Q Consensus 181 ~q~TC~Dgf~ 190 (233)
.+.--|-+.
T Consensus 484 -yE~aGDyy~ 492 (526)
T 2wb7_A 484 -HEMAGDYYV 492 (526)
T ss_dssp -HHHHHHHHH
T ss_pred -hhhccHHHH
Confidence 444445444
No 10
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=19.14 E-value=2.3e+02 Score=19.38 Aligned_cols=59 Identities=15% Similarity=0.286 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhh-------------hchhhHHHHHHHHHHHHHHHHHHHHhHHh
Q 026791 100 TKPDPEVILKLSLQVNVNHFSNITSSIKSL-------------YGNHLEVALRDCVDQLRDASSRLNDSMSE 158 (233)
Q Consensus 100 ~~~~~~~l~~~sl~~t~~~~~~a~~~~~~l-------------~d~~~k~AL~dC~el~~~a~d~L~~s~~~ 158 (233)
...+-.+|-...-+.........+..+... ++..+..|+..|.+-|-++-..+.+.+..
T Consensus 7 ~~~~~~el~~~~~e~q~k~~~~l~~~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~ 78 (89)
T 3dxr_A 7 NSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQE 78 (89)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHH
Done!