BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026793
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis
thaliana GN=PTB PE=2 SV=1
Length = 399
Score = 221 bits (563), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/147 (73%), Positives = 123/147 (83%), Gaps = 2/147 (1%)
Query: 1 MQPTIGPDGKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQAL 60
MQP +G DGKK E +SNVLL IENMQYAVTVDVL+TVFSA+GTVQK+AIFEKNG TQAL
Sbjct: 227 MQPALGADGKKVESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQAL 286
Query: 61 IQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLA 120
IQY DI TAA+AKE+LEGHCIYDGGYCKL LSYSRHTDLNVKA+SDKSRDYT+ D +LL
Sbjct: 287 IQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLV 346
Query: 121 TQQIPSVPAA--PSVWQSHQAAPMYSG 145
Q+ P+V + P+ WQ+ QA YSG
Sbjct: 347 AQKGPAVSGSAPPAGWQNPQAQSQYSG 373
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 69/103 (66%), Gaps = 7/103 (6%)
Query: 17 NVLLASIENMQ-YAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKES 75
NVLL + E ++ + V++DV++ VFSAFG V K+A FEK G QAL+Q+ D+ TA+ A+ +
Sbjct: 110 NVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSA 169
Query: 76 LEGHCI------YDGGYCKLHLSYSRHTDLNVKAYSDKSRDYT 112
L+G I G C L +SYS HTDLN+K S +SRDYT
Sbjct: 170 LDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYT 212
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 98/111 (88%)
Query: 2 QPTIGPDGKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALI 61
Q +G DGKK E ESNVLLASIENMQYAVT+DVL+ VF+AFG VQK+A+F+KNGG QALI
Sbjct: 229 QVAVGVDGKKMEPESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALI 288
Query: 62 QYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYT 112
QY D+ TA VAKE+LEGHCIYDGG+CKLH++YSRHTDL++K +D+SRDYT
Sbjct: 289 QYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYT 339
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 71/127 (55%), Gaps = 18/127 (14%)
Query: 17 NVLLASIE-NMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKES 75
NVLL +IE + V++DVL+ VFSAFG V K+ FEK G QAL+Q+ D TA AK +
Sbjct: 111 NVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLA 170
Query: 76 LEGHCI------YDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLATQQIPSVPA 129
L+G I G C L ++YS HTDL VK S +SRDYT P +P
Sbjct: 171 LDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTN-----------PYLPV 219
Query: 130 APSVWQS 136
APS S
Sbjct: 220 APSAIDS 226
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus
GN=Ptbp1 PE=1 SV=1
Length = 555
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 84/143 (58%), Gaps = 13/143 (9%)
Query: 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE 77
VL +EN+ Y VT+DVL+ +FS FGTV K+ F KN QAL+QY D +A AK SL+
Sbjct: 182 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLD 241
Query: 78 GHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSH 137
G IY+ C L + +S+ T LNVK +DKSRDYT D +PS + PS+ Q+
Sbjct: 242 GQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD--------LPSGDSQPSLDQTM 292
Query: 138 QAA----PMYSGSEYATAVPGQV 156
AA + S S YA AVP +
Sbjct: 293 AAAFGAPGIMSASPYAGAVPSHL 315
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1
PE=1 SV=2
Length = 527
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 75/123 (60%), Gaps = 9/123 (7%)
Query: 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE 77
VL +EN+ Y VT+DVL+ +FS FGTV K+ F KN QAL+QY D +A AK SL+
Sbjct: 182 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLD 241
Query: 78 GHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSH 137
G IY+ C L + +S+ T LNVK +DKSRDYT D +PS + PS+ Q+
Sbjct: 242 GQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD--------LPSGDSQPSLDQTM 292
Query: 138 QAA 140
AA
Sbjct: 293 AAA 295
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1
PE=1 SV=1
Length = 531
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 75/123 (60%), Gaps = 9/123 (7%)
Query: 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE 77
VL +EN+ Y VT+DVL+ +FS FGTV K+ F KN QAL+QY D +A AK SL+
Sbjct: 183 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLD 242
Query: 78 GHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSH 137
G IY+ C L + +S+ T LNVK +DKSRDYT D +PS + PS+ Q+
Sbjct: 243 GQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD--------LPSGDSQPSLDQTM 293
Query: 138 QAA 140
AA
Sbjct: 294 AAA 296
>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2
SV=1
Length = 531
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 75/123 (60%), Gaps = 9/123 (7%)
Query: 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE 77
VL +EN+ Y VT+DVL+ +FS FGTV K+ F KN QAL+QY D +A AK SL+
Sbjct: 183 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLD 242
Query: 78 GHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSH 137
G IY+ C L + +S+ T LNVK +DKSRDYT D +PS + PS+ Q+
Sbjct: 243 GQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD--------LPSGDSQPSLDQTM 293
Query: 138 QAA 140
AA
Sbjct: 294 AAA 296
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKES 75
++VLL S N + VT L +F +G VQ+V + N AL+Q D + A +A
Sbjct: 336 NSVLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKVLF-NKKENALVQMADGSQAQLAMSH 393
Query: 76 LEGHCIY 82
L GH ++
Sbjct: 394 LNGHKLH 400
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2
SV=1
Length = 557
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 80/138 (57%), Gaps = 13/138 (9%)
Query: 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE 77
VL +EN+ Y VT+DVL+ +FS FGTV K+ F KN QAL+QY D +A AK SL+
Sbjct: 183 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLD 242
Query: 78 GHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSH 137
G IY+ C L + +S+ T LNVK +DKSRDYT D +PS PS+ Q+
Sbjct: 243 GQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD--------LPSGDNQPSLDQTM 293
Query: 138 QAA----PMYSGSEYATA 151
AA + S S YA A
Sbjct: 294 AAAFGAPGIMSASPYAGA 311
>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus
GN=Ptbp3 PE=2 SV=1
Length = 523
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 102/220 (46%), Gaps = 37/220 (16%)
Query: 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKE 74
+S VL IEN+ Y VT++VL+ +FS FGTV K+ F KN QAL+QY D A AK
Sbjct: 149 QSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKM 208
Query: 75 SLEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVW 134
+L+G IY+ C L + +S+ T LNVK +DKSRD+T D +P+ PS+
Sbjct: 209 ALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD--------LPTGDGQPSLE 259
Query: 135 QSHQAAPMYSGSEYATAVPGQVPPGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFA 194
PP P + P Y A+G P +PQ+ +
Sbjct: 260 ----------------------PPMAAAFGAPGIMSSP--YAGAAGFAPAIAFPQAAGLS 295
Query: 195 YATAPTPTGSSPLSLTQPGVP--PVRPGGASPPGHPPYYV 232
+ P G PL+LT V PG + PG+ V
Sbjct: 296 VSAVPGALG--PLTLTSSAVSGRMAIPGASGIPGNSVLLV 333
>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3
PE=2 SV=1
Length = 523
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 101/220 (45%), Gaps = 37/220 (16%)
Query: 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKE 74
+S VL IEN+ Y VT++VL+ +FS FGTV K+ F KN QAL+QY D A AK
Sbjct: 149 QSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKM 208
Query: 75 SLEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVW 134
+L+G IY+ C L + +S+ T LNVK +DKSRD+T D +P+ PS+
Sbjct: 209 ALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD--------LPTGDGQPSLE 259
Query: 135 QSHQAAPMYSGSEYATAVPGQVPPGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFA 194
PP P + P Y A+G P +PQ+ +
Sbjct: 260 ----------------------PPMAAAFGAPGIMSSP--YAGAAGFAPAIAFPQAAGLS 295
Query: 195 YATAPTPTGSSPLSLTQPGVP--PVRPGGASPPGHPPYYV 232
P G PL+LT V PG + PG+ V
Sbjct: 296 VPAVPGALG--PLTLTSSAVSGRMAIPGASGMPGNSVLLV 333
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE 77
VL I+NM Y VT+DVL+ +FS FG V K+ F KN QAL+QY D A AK +L+
Sbjct: 180 VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALD 239
Query: 78 GHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSH 137
G IY+ C L + +S+ +LNVK +DKSRDYT D +PS P++ +
Sbjct: 240 GQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPD--------LPSGDGQPALDPAI 290
Query: 138 QAAPMYSGSEYATAVPGQVPPGQVPS 163
AA ++ AVPG + P +P+
Sbjct: 291 AAA--FAKETSLLAVPGALSPLAIPN 314
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE 77
VLL S N + VT L T+F +G VQ+V I N ALIQ D + +A L
Sbjct: 339 VLLVSNLN-EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLN 396
Query: 78 GHCIYDGGYCKLHLSYSRHTDLNVKAYSDK--SRDY 111
G +Y G ++ LS + L + D+ ++D+
Sbjct: 397 GQKMY-GKIIRVTLSKHQTVQLPREGLDDQGLTKDF 431
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE 77
VL I+NM Y VT+DVL+ +FS FG V K+ F KN QAL+QY D A AK +L+
Sbjct: 180 VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALD 239
Query: 78 GHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSH 137
G IY+ C L + +S+ +LNVK +DKSRDYT D +PS P++ +
Sbjct: 240 GQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPD--------LPSGDGQPALDPAI 290
Query: 138 QAAPMYSGSEYATAVPGQVPPGQVPS 163
AA ++ AVPG + P +P+
Sbjct: 291 AAA--FAKETSLLAVPGALSPLAIPN 314
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE 77
VLL S N + VT L T+F +G VQ+V I N ALIQ D + +A L
Sbjct: 339 VLLVSNLN-EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLN 396
Query: 78 GHCIYDGGYCKLHLSYSRHTDLNVKAYSDK--SRDY 111
G +Y G ++ LS + L + D+ ++D+
Sbjct: 397 GQKMY-GKIIRVTLSKHQTVQLPREGLDDQGLTKDF 431
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE 77
VL I+NM Y VT+DVL+ +FS FG V K+ F KN QAL+QY D A AK +L+
Sbjct: 180 VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALD 239
Query: 78 GHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSH 137
G IY+ C L + +S+ +LNVK +DKSRDYT D +PS P++ +
Sbjct: 240 GQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPD--------LPSGDGQPALDPAI 290
Query: 138 QAAPMYSGSEYATAVPGQVPPGQVPS 163
AA ++ AVPG + P +P+
Sbjct: 291 AAA--FAKETSLLAVPGALSPLAIPN 314
Score = 33.9 bits (76), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE 77
VLL S N + VT L T+F +G VQ+V I N ALIQ D + +A L
Sbjct: 339 VLLVSNLN-EEMVTPQSLFTLFGVYGDVQRVKIL-YNKKDSALIQMADGNQSQLAMNHLN 396
Query: 78 GHCIYDGGYCKLHLSYSRHTDLNVKAYSDK--SRDY 111
G +Y G ++ LS + L + D+ ++D+
Sbjct: 397 GQKMY-GKIIRVTLSKHQTVQLPREGLDDQGLTKDF 431
>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3
PE=1 SV=2
Length = 552
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKE 74
+S VL IEN+ Y VT++VL+ +FS FGTV K+ F KN QAL+QY D A AK
Sbjct: 178 QSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKM 237
Query: 75 SLEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQD 115
+L+G IY+ C L + +S+ T LNVK +DKSRD+T D
Sbjct: 238 ALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD 277
>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis
thaliana GN=At1g43190 PE=2 SV=1
Length = 432
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 90/165 (54%), Gaps = 21/165 (12%)
Query: 4 TIGPDGKKKELESN-VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQ 62
TI + +E E N +LL +I +M Y +TVDVL+ VFS +G V+K+ F+K+ G QALIQ
Sbjct: 85 TIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQ 144
Query: 63 YPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLATQ 122
Y AA A+ +L+G IYDG C+L + +S +L V +D+SRDYT
Sbjct: 145 YQVQQCAASARTALQGRNIYDGC-CQLDIQFSNLEELQVNYNNDRSRDYTN--------- 194
Query: 123 QIPSVPAAPSVWQSH-------QAAP-MYSGSEYATAVPGQVPPG 159
P++PA SH A P M + S A A G +PPG
Sbjct: 195 --PNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFGGGLPPG 237
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus
GN=Hnrpll PE=1 SV=3
Length = 591
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKES 75
+ VLL SI+N Y +TVDVL TV + G VQ++ IF++N G QA++++ + A AK +
Sbjct: 215 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 273
Query: 76 LEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYT 112
L G IY G C L + Y+R T LNV + S DYT
Sbjct: 274 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT 309
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens
GN=HNRPLL PE=1 SV=1
Length = 542
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKES 75
+ VLL SI+N Y +TVDVL TV + G VQ++ IF++N G QA++++ + A AK +
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 224
Query: 76 LEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYT 112
L G IY G C L + Y+R T LNV + S DYT
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT 260
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus GN=Hnrnpl
PE=1 SV=2
Length = 586
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKES 75
++VLL +I N Y++T DVL T+ + G VQ++ IF KN G QA++++ + +A AK S
Sbjct: 189 NSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKAS 247
Query: 76 LEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYT 112
L G IY G C L + Y++ T LNV + DYT
Sbjct: 248 LNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYT 283
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL
PE=1 SV=2
Length = 589
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKES 75
++VLL +I N Y++T DVL T+ + G VQ++ IF KN G QA++++ + +A AK S
Sbjct: 192 NSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKAS 250
Query: 76 LEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYT 112
L G IY G C L + Y++ T LNV + DYT
Sbjct: 251 LNGADIY-SGCCTLKIEYAKPTRLNVFKNDQDTWDYT 286
>sp|P08699|LEG3_RAT Galectin-3 OS=Rattus norvegicus GN=Lgals3 PE=1 SV=4
Length = 262
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 111 YTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPGQVPSWNPSAQA 170
+++ D LA P+ P W + A Y G+ Y A PGQ PPG P QA
Sbjct: 5 FSLNDA--LAGSGNPNPQGWPGAWGNQPGAGGYPGASYPGAYPGQAPPGGYP-----GQA 57
Query: 171 GPAAYVSASGP--FPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVRPG 220
P+AY +GP +PG T P AY PT G+ P PG P PG
Sbjct: 58 PPSAYPGPTGPSAYPGPTAPG----AY-PGPTAPGAFPGQPGGPGAYPSAPG 104
>sp|P16110|LEG3_MOUSE Galectin-3 OS=Mus musculus GN=Lgals3 PE=1 SV=3
Length = 264
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 119 LATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPGQVPSWNP----SAQAGPAA 174
LA P+ P W + A Y G+ Y A PGQ PPG P P QA P+A
Sbjct: 11 LAGSGNPNPQGYPGAWGNQPGAGGYPGAAYPGAYPGQAPPGAYPGQAPPGAYPGQAPPSA 70
Query: 175 Y--VSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVP 215
Y +A G +PG T P AY P P G+ P QPG P
Sbjct: 71 YPGPTAPGAYPGPTAPG----AYPGQPAP-GAFP---GQPGAP 105
>sp|P47953|LEG3_CRILO Galectin-3 OS=Cricetulus longicaudatus GN=LGALS3 PE=2 SV=2
Length = 245
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 111 YTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPGQVPSWN-PSAQ 169
+++ D LA P+ P W + A Y G+ Y A PGQ PPG P P A
Sbjct: 5 FSLNDA--LAGSGNPNPQGWPGAWGNQPGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAY 62
Query: 170 AGPAAYVSASGPFPGQTYPQSP--VFAYATAP 199
GP A + GP PG YP P AY +AP
Sbjct: 63 PGPTAPGAYPGPAPG-AYPGQPGASGAYPSAP 93
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 37/218 (16%)
Query: 23 IENMQYAVTVDVLNT----VFSAFGTVQKV---AIFEKNGGTQALIQYPDITTAAVAKES 75
I N+ + D L +FS FG + + I + G QA + + ++T+A A S
Sbjct: 20 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRG--QAFVIFKEVTSATNALRS 77
Query: 76 LEGHCIYDGGYCKLHLSYSRHTDLNVKA-----YSDKSRDYTVQDQTLLATQQIPSVPAA 130
++G YD + + Y++ TD ++ A Y ++ R +++ +Q+ PAA
Sbjct: 78 MQGFPFYDK---PMRIQYAK-TDSDIIAKMKGTYVERDRK---REKRKPKSQE---TPAA 127
Query: 131 PSVWQSHQAAPMYSGSEYATAVPGQVPPGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQS 190
Q AAP V G V P VP P QA + P
Sbjct: 128 KKAVQGGAAAP----------VVGAVQP--VPGMPPMPQAPRIMHHMPGQPPYMPPPGMI 175
Query: 191 PVFAYATAPTPTGSSPLSLTQPG-VPPVRPGGASPPGH 227
P A P G+ P PG +PP +P +PP H
Sbjct: 176 PPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNH 213
>sp|P17931|LEG3_HUMAN Galectin-3 OS=Homo sapiens GN=LGALS3 PE=1 SV=5
Length = 250
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 110 DYTVQDQTLLATQQIPSVPAAPSVWQSHQA-APMYSGSEYATAVPGQVPPGQVPSWNPSA 168
++++ D L+ P+ P W + A A Y G+ Y A PGQ PPG P
Sbjct: 4 NFSLHDA--LSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYP-----G 56
Query: 169 QAGPAAYVSASGPFPGQTYP 188
QA P AY A G +PG P
Sbjct: 57 QAPPGAYPGAPGAYPGAPAP 76
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 88/240 (36%), Gaps = 52/240 (21%)
Query: 10 KKKELESNVLLASI----ENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQY-- 63
++K LE+ A + +N+ D L F AFGT+ + + G +
Sbjct: 317 EEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVC 376
Query: 64 ---PDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLA 120
PD T AV++ + G I G L+++ ++ D+ R ++ Q
Sbjct: 377 YSSPDEATKAVSE--MNGKMI---GTKPLYVALAQRKDV---------RRQALESQIAQR 422
Query: 121 TQQIPSVPAAPSVWQSHQAAPMYS---GSEYATAVPGQVPPGQVPSWNPSAQAGPAAYVS 177
QQ A Q + PMY Y +PG +PP + P
Sbjct: 423 AQQRMQYGAGFPGMQGYMGQPMYGYPPMPGYGQPMPG-MPPVRGPMMG------------ 469
Query: 178 ASGPFPG--QTYPQS-PVFAYATAPTPTG----SSPLSLTQPGVP--PVRPGGASPPGHP 228
+PG Q QS P F P P G P + PG P PVRPGGA P P
Sbjct: 470 ----YPGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVRPGGARIPAAP 525
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 88/240 (36%), Gaps = 52/240 (21%)
Query: 10 KKKELESNVLLASI----ENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQY-- 63
++K LE+ A + +N+ D L F AFGT+ + + G +
Sbjct: 317 EEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSGVSRGFGFVC 376
Query: 64 ---PDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLA 120
PD T AV++ + G I G L+++ ++ D+ R ++ Q
Sbjct: 377 YSSPDEATKAVSE--MNGKMI---GTKPLYVALAQRKDV---------RRQALESQIAQR 422
Query: 121 TQQIPSVPAAPSVWQSHQAAPMYS---GSEYATAVPGQVPPGQVPSWNPSAQAGPAAYVS 177
QQ A Q + PMY Y +PG +PP + P
Sbjct: 423 AQQRMQYGAGFPGMQGYMGQPMYGYPPMPGYGQPMPG-MPPVRGPMMG------------ 469
Query: 178 ASGPFPG--QTYPQS-PVFAYATAPTPTG----SSPLSLTQPGVP--PVRPGGASPPGHP 228
+PG Q QS P F P P G P + PG P PVRPGGA P P
Sbjct: 470 ----YPGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVRPGGARIPAAP 525
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 83/215 (38%), Gaps = 30/215 (13%)
Query: 23 IENMQYAVTVDVLNT----VFSAFGTVQKVAIFE--KNGGTQALIQYPDITTAAVAKESL 76
I N+ + D L +FS FG + + + K G QA + + ++++A A S+
Sbjct: 14 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRG-QAFVIFKEVSSATNALRSM 72
Query: 77 EGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKS---RDYTVQDQTLLATQQIPSVPAAPSV 133
+G YD + + Y++ TD ++ A + RD + + + + PAA
Sbjct: 73 QGFPFYDK---PMRIQYAK-TDSDIIAKMKGTFVERDRKREKRKPKSQE----TPAAKKA 124
Query: 134 WQSHQAAPMYSGSEYATAVPGQVPPGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVF 193
Q AAP+ + G VP P QA + P P
Sbjct: 125 VQGGAAAPVVGTVQ-----------GPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPP 173
Query: 194 AYATAPTPTGSSPLSLTQPG-VPPVRPGGASPPGH 227
A P G+ P PG +PP +P +PP H
Sbjct: 174 GLAPGQLPPGAMPPQQLMPGQMPPAQPLSENPPNH 208
>sp|P38486|LEG3_CANFA Galectin-3 OS=Canis familiaris GN=LGALS3 PE=1 SV=3
Length = 296
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 49/119 (41%), Gaps = 21/119 (17%)
Query: 131 PSVWQSHQA-APMYSGSEYATAVPGQVPPGQVPSWNP----SAQAGPAAYVSASGP--FP 183
P W + A A Y G+ Y A PGQ PPG P P QA P Y + P +P
Sbjct: 23 PGPWGNQPAGAGGYPGASYPGAYPGQAPPGGYPGQAPPGGYPGQAPPGGYPGQAPPGGYP 82
Query: 184 GQTYP-----QSPVFAY------ATAPTPTGSSPLSLTQPGVPPVRPGGAS---PPGHP 228
GQ P Q+P Y T P PT + T PG P +P G PPG P
Sbjct: 83 GQAPPGGYPGQAPPGGYPGQAPPGTYPGPTAPAYPGPTAPGTQPGQPSGPGAYPPPGQP 141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,208,801
Number of Sequences: 539616
Number of extensions: 4731125
Number of successful extensions: 19276
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 1006
Number of HSP's that attempted gapping in prelim test: 15246
Number of HSP's gapped (non-prelim): 3778
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)