Query 026793
Match_columns 233
No_of_seqs 161 out of 1101
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 12:47:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1190 Polypyrimidine tract-b 100.0 5E-30 1.1E-34 240.9 8.2 109 11-120 143-251 (492)
2 KOG1456 Heterogeneous nuclear 99.9 3.1E-26 6.8E-31 213.9 14.6 111 9-121 113-223 (494)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3E-23 6.4E-28 198.4 13.0 104 13-117 91-194 (481)
4 KOG1190 Polypyrimidine tract-b 99.8 1.1E-18 2.4E-23 164.7 10.7 114 2-121 282-401 (492)
5 PLN03134 glycine-rich RNA-bind 99.5 8E-14 1.7E-18 115.1 11.2 75 19-96 35-113 (144)
6 PF00076 RRM_1: RNA recognitio 99.5 1.1E-13 2.3E-18 96.4 9.0 67 21-90 1-70 (70)
7 PF13893 RRM_5: RNA recognitio 99.5 9.4E-14 2E-18 95.8 8.5 56 35-94 1-56 (56)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 9.2E-14 2E-18 125.4 10.3 75 20-97 271-349 (352)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.8E-13 3.9E-18 131.2 12.5 100 14-119 273-379 (481)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 3.2E-13 7E-18 121.9 10.0 76 19-97 4-83 (352)
11 KOG0107 Alternative splicing f 99.4 3.4E-13 7.3E-18 116.1 7.7 77 18-98 10-86 (195)
12 TIGR01659 sex-lethal sex-letha 99.4 8.1E-13 1.8E-17 123.2 10.7 77 17-96 106-186 (346)
13 KOG0114 Predicted RNA-binding 99.4 4.2E-13 9.2E-18 107.6 6.6 86 21-109 21-107 (124)
14 KOG0117 Heterogeneous nuclear 99.4 2.3E-11 5E-16 116.4 18.1 79 14-99 255-333 (506)
15 TIGR01628 PABP-1234 polyadenyl 99.4 1.8E-11 4E-16 118.4 16.9 78 18-98 285-365 (562)
16 KOG0148 Apoptosis-promoting RN 99.4 5.6E-12 1.2E-16 114.7 11.7 75 19-98 165-239 (321)
17 TIGR01659 sex-lethal sex-letha 99.4 2.9E-12 6.2E-17 119.5 10.1 76 20-96 195-274 (346)
18 KOG0121 Nuclear cap-binding pr 99.4 1.2E-12 2.6E-17 108.3 6.6 73 18-93 36-112 (153)
19 PF14259 RRM_6: RNA recognitio 99.3 6.9E-12 1.5E-16 88.8 8.7 63 21-83 1-66 (70)
20 PLN03120 nucleic acid binding 99.3 6.8E-12 1.5E-16 113.5 10.3 74 19-96 5-79 (260)
21 PLN03213 repressor of silencin 99.3 6.9E-12 1.5E-16 121.7 10.3 83 13-98 5-89 (759)
22 KOG4206 Spliceosomal protein s 99.3 4.5E-12 9.7E-17 112.1 7.8 85 14-103 7-96 (221)
23 TIGR01628 PABP-1234 polyadenyl 99.3 7.3E-12 1.6E-16 121.2 10.0 73 20-95 2-78 (562)
24 smart00362 RRM_2 RNA recogniti 99.3 2E-11 4.3E-16 82.8 8.7 69 20-91 1-71 (72)
25 KOG4207 Predicted splicing fac 99.3 5.5E-12 1.2E-16 111.4 6.8 80 15-97 10-93 (256)
26 KOG0122 Translation initiation 99.3 1.5E-11 3.2E-16 110.5 9.5 88 4-97 178-269 (270)
27 TIGR01648 hnRNP-R-Q heterogene 99.3 1.6E-11 3.4E-16 121.6 10.5 75 17-98 232-308 (578)
28 PLN03121 nucleic acid binding 99.3 3.6E-11 7.8E-16 107.8 10.7 74 18-95 5-79 (243)
29 smart00360 RRM RNA recognition 99.3 3.1E-11 6.8E-16 81.4 7.9 66 23-91 1-70 (71)
30 TIGR01622 SF-CC1 splicing fact 99.3 2.7E-11 5.8E-16 113.6 9.9 76 18-96 186-265 (457)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.2 3.4E-11 7.4E-16 114.2 9.9 76 19-97 296-375 (509)
32 TIGR01645 half-pint poly-U bin 99.2 2.4E-10 5.1E-15 113.8 15.9 76 17-95 203-282 (612)
33 KOG0105 Alternative splicing f 99.2 1.4E-11 3E-16 107.5 6.2 78 18-98 6-84 (241)
34 cd00590 RRM RRM (RNA recogniti 99.2 1.2E-10 2.7E-15 79.3 9.6 70 21-93 2-74 (74)
35 KOG0125 Ataxin 2-binding prote 99.2 4.4E-11 9.4E-16 111.1 9.4 84 11-97 89-174 (376)
36 KOG0130 RNA-binding protein RB 99.2 3.9E-11 8.4E-16 100.3 6.6 72 21-95 75-150 (170)
37 TIGR01645 half-pint poly-U bin 99.2 1E-10 2.2E-15 116.5 9.3 75 17-94 106-184 (612)
38 COG0724 RNA-binding proteins ( 99.2 1.9E-10 4.1E-15 94.4 9.4 74 19-95 116-193 (306)
39 TIGR01648 hnRNP-R-Q heterogene 99.1 1.8E-10 3.8E-15 114.2 9.6 68 17-84 57-127 (578)
40 TIGR01622 SF-CC1 splicing fact 99.1 3.1E-10 6.6E-15 106.5 10.1 75 18-96 89-167 (457)
41 KOG0111 Cyclophilin-type pepti 99.0 1.2E-10 2.7E-15 103.9 3.9 81 17-100 9-93 (298)
42 KOG0113 U1 small nuclear ribon 99.0 1.5E-09 3.3E-14 99.9 9.8 87 9-98 92-182 (335)
43 KOG0126 Predicted RNA-binding 99.0 6.4E-11 1.4E-15 102.9 0.5 74 17-93 34-111 (219)
44 KOG0127 Nucleolar protein fibr 99.0 1.1E-09 2.3E-14 107.4 8.3 75 20-97 119-196 (678)
45 KOG0108 mRNA cleavage and poly 99.0 1.5E-09 3.3E-14 104.4 7.8 77 19-98 19-99 (435)
46 TIGR01642 U2AF_lg U2 snRNP aux 98.9 2.2E-09 4.7E-14 102.0 8.3 78 15-97 408-502 (509)
47 KOG0148 Apoptosis-promoting RN 98.9 2.4E-09 5.3E-14 97.7 7.9 84 12-98 56-143 (321)
48 KOG0132 RNA polymerase II C-te 98.9 6.4E-08 1.4E-12 97.9 18.2 73 20-97 423-495 (894)
49 KOG0109 RNA-binding protein LA 98.9 2.6E-09 5.7E-14 98.3 6.3 72 19-97 3-74 (346)
50 KOG0415 Predicted peptidyl pro 98.9 3E-09 6.6E-14 100.2 6.7 82 12-98 235-320 (479)
51 KOG0131 Splicing factor 3b, su 98.9 3E-09 6.4E-14 92.4 5.6 74 19-95 10-87 (203)
52 smart00361 RRM_1 RNA recogniti 98.9 1E-08 2.2E-13 74.1 7.4 57 32-91 2-69 (70)
53 KOG0145 RNA-binding protein EL 98.8 1.4E-08 3.1E-13 92.7 9.3 76 17-95 277-356 (360)
54 KOG0123 Polyadenylate-binding 98.8 9.9E-09 2.2E-13 96.8 8.2 70 21-94 79-150 (369)
55 KOG0144 RNA-binding protein CU 98.8 3.7E-09 8.1E-14 101.3 5.1 79 20-98 126-207 (510)
56 KOG0144 RNA-binding protein CU 98.8 1.5E-08 3.3E-13 97.2 7.8 87 12-98 28-118 (510)
57 KOG1457 RNA binding protein (c 98.8 4.8E-09 1E-13 93.9 3.5 76 16-91 208-283 (284)
58 KOG0149 Predicted RNA-binding 98.8 1.7E-08 3.7E-13 90.4 6.8 68 15-84 9-80 (247)
59 KOG0145 RNA-binding protein EL 98.8 3.9E-08 8.4E-13 89.9 9.1 77 23-102 46-126 (360)
60 KOG0131 Splicing factor 3b, su 98.6 3.5E-08 7.7E-13 85.8 5.3 76 20-98 98-178 (203)
61 KOG0147 Transcriptional coacti 98.6 4.6E-08 1E-12 95.7 6.0 72 19-93 279-354 (549)
62 KOG0110 RNA-binding protein (R 98.6 4.6E-08 9.9E-13 98.0 5.4 88 8-98 603-694 (725)
63 KOG0123 Polyadenylate-binding 98.6 1.7E-07 3.8E-12 88.4 8.7 73 20-98 3-76 (369)
64 KOG0110 RNA-binding protein (R 98.6 1.2E-07 2.6E-12 95.1 7.7 72 21-95 518-596 (725)
65 KOG0153 Predicted RNA-binding 98.5 2.9E-07 6.2E-12 86.4 8.0 77 16-96 226-302 (377)
66 KOG0117 Heterogeneous nuclear 98.5 7.2E-07 1.6E-11 86.0 10.5 79 14-94 79-161 (506)
67 KOG4660 Protein Mei2, essentia 98.5 7.6E-08 1.6E-12 94.3 3.5 64 20-84 77-140 (549)
68 KOG0109 RNA-binding protein LA 98.5 1.9E-07 4.2E-12 86.2 5.9 71 19-96 79-149 (346)
69 KOG1457 RNA binding protein (c 98.5 8.6E-07 1.9E-11 79.6 9.7 85 14-98 30-119 (284)
70 KOG1456 Heterogeneous nuclear 98.5 9.7E-07 2.1E-11 83.9 10.5 102 14-121 285-393 (494)
71 KOG0127 Nucleolar protein fibr 98.5 4.2E-07 9.2E-12 89.5 8.3 77 19-97 293-378 (678)
72 KOG0124 Polypyrimidine tract-b 98.4 2.4E-07 5.1E-12 88.0 4.8 72 18-92 113-188 (544)
73 KOG0146 RNA-binding protein ET 98.4 3.4E-07 7.3E-12 84.1 5.6 85 14-111 283-371 (371)
74 KOG0106 Alternative splicing f 98.3 4.8E-07 1E-11 80.2 3.4 71 19-96 2-72 (216)
75 KOG0533 RRM motif-containing p 98.3 3.3E-06 7.1E-11 76.1 8.7 81 13-96 78-161 (243)
76 KOG4206 Spliceosomal protein s 98.3 2.9E-06 6.2E-11 75.5 7.9 79 12-95 142-220 (221)
77 KOG4454 RNA binding protein (R 98.2 4.8E-07 1E-11 81.0 2.2 72 19-93 10-83 (267)
78 KOG1548 Transcription elongati 98.2 4.6E-06 9.9E-11 78.5 7.5 76 19-97 135-221 (382)
79 KOG4661 Hsp27-ERE-TATA-binding 98.2 4.2E-06 9.1E-11 83.2 7.3 74 21-97 408-485 (940)
80 KOG0116 RasGAP SH3 binding pro 98.1 3.5E-06 7.5E-11 81.1 5.9 72 18-93 288-363 (419)
81 PF11608 Limkain-b1: Limkain b 98.1 1.6E-05 3.4E-10 61.8 7.6 70 19-97 3-77 (90)
82 KOG0146 RNA-binding protein ET 98.1 6.9E-06 1.5E-10 75.6 6.0 79 20-98 21-102 (371)
83 KOG0151 Predicted splicing reg 98.0 1.2E-05 2.6E-10 81.4 6.4 78 20-100 176-260 (877)
84 KOG4209 Splicing factor RNPS1, 98.0 1.6E-05 3.5E-10 71.0 6.6 80 16-99 99-182 (231)
85 KOG0124 Polypyrimidine tract-b 97.9 2.2E-05 4.8E-10 74.8 6.5 65 18-82 210-278 (544)
86 KOG4212 RNA-binding protein hn 97.9 3.1E-05 6.6E-10 75.2 7.5 73 17-93 535-607 (608)
87 KOG4212 RNA-binding protein hn 97.9 4E-05 8.6E-10 74.4 7.7 65 19-83 45-113 (608)
88 KOG4208 Nucleolar RNA-binding 97.9 6.6E-05 1.4E-09 66.4 8.2 73 21-96 52-129 (214)
89 PF08777 RRM_3: RNA binding mo 97.7 0.00014 3E-09 57.5 6.7 58 20-79 3-60 (105)
90 KOG4211 Splicing factor hnRNP- 97.5 0.00038 8.2E-09 68.1 7.9 80 11-95 3-84 (510)
91 KOG1995 Conserved Zn-finger pr 97.4 0.00018 4E-09 67.8 4.6 83 13-98 61-155 (351)
92 KOG1855 Predicted RNA-binding 97.3 0.00023 5E-09 68.8 4.5 64 15-80 230-310 (484)
93 KOG4205 RNA-binding protein mu 97.3 0.00041 8.8E-09 64.7 6.0 73 16-90 95-171 (311)
94 KOG1548 Transcription elongati 97.3 0.00088 1.9E-08 63.4 8.2 72 19-93 266-348 (382)
95 KOG0106 Alternative splicing f 97.3 0.0002 4.4E-09 63.7 3.3 67 20-93 101-167 (216)
96 KOG1996 mRNA splicing factor [ 97.3 0.0005 1.1E-08 64.1 5.7 78 15-97 280-367 (378)
97 KOG4307 RNA binding protein RB 97.2 0.001 2.2E-08 67.7 7.8 64 21-84 870-937 (944)
98 PF04847 Calcipressin: Calcipr 97.2 0.00099 2.1E-08 57.8 6.6 75 30-113 7-83 (184)
99 KOG0147 Transcriptional coacti 97.2 0.00063 1.4E-08 67.2 5.9 81 14-100 441-531 (549)
100 KOG0226 RNA-binding proteins [ 97.2 0.00015 3.3E-09 66.2 1.6 67 17-83 189-259 (290)
101 KOG4205 RNA-binding protein mu 97.2 0.00035 7.5E-09 65.1 3.8 64 20-83 8-79 (311)
102 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00085 1.8E-08 46.9 4.8 51 20-73 3-53 (53)
103 KOG4574 RNA-binding protein (c 97.1 0.00022 4.8E-09 73.5 2.4 71 25-98 305-375 (1007)
104 COG5175 MOT2 Transcriptional r 97.1 0.0013 2.8E-08 62.5 6.7 73 20-95 116-201 (480)
105 KOG0120 Splicing factor U2AF, 97.1 0.0015 3.3E-08 64.4 7.3 57 34-93 425-488 (500)
106 KOG0120 Splicing factor U2AF, 96.9 0.0014 3E-08 64.7 5.3 91 11-104 282-376 (500)
107 KOG4849 mRNA cleavage factor I 96.9 0.051 1.1E-06 52.1 15.4 79 15-95 77-161 (498)
108 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.008 1.7E-07 47.6 7.6 70 20-95 8-90 (100)
109 KOG2416 Acinus (induces apopto 96.7 0.0011 2.5E-08 66.3 3.3 88 13-104 441-529 (718)
110 KOG2202 U2 snRNP splicing fact 96.5 0.0014 3E-08 59.7 2.1 63 33-98 83-149 (260)
111 KOG2314 Translation initiation 96.5 0.0049 1.1E-07 61.7 5.9 68 21-91 61-138 (698)
112 KOG4211 Splicing factor hnRNP- 96.5 0.0059 1.3E-07 60.0 6.3 78 15-98 102-183 (510)
113 PF04059 RRM_2: RNA recognitio 96.4 0.024 5.2E-07 44.7 8.2 78 20-97 3-87 (97)
114 KOG4210 Nuclear localization s 96.3 0.0033 7.2E-08 57.8 3.6 72 22-97 189-264 (285)
115 KOG0112 Large RNA-binding prot 96.0 0.008 1.7E-07 62.6 4.8 76 19-97 456-531 (975)
116 PF08952 DUF1866: Domain of un 95.9 0.038 8.3E-07 46.7 7.7 80 12-99 23-109 (146)
117 KOG3152 TBP-binding protein, a 95.8 0.0035 7.6E-08 57.4 0.9 68 17-84 73-156 (278)
118 KOG4676 Splicing factor, argin 95.5 0.019 4.2E-07 55.5 5.0 72 20-94 9-87 (479)
119 KOG4285 Mitotic phosphoprotein 95.5 0.05 1.1E-06 51.1 7.3 61 19-83 198-258 (350)
120 PF07576 BRAP2: BRCA1-associat 94.9 0.47 1E-05 38.1 10.5 65 20-84 15-82 (110)
121 PF15023 DUF4523: Protein of u 94.9 0.069 1.5E-06 45.6 5.8 62 15-79 83-148 (166)
122 KOG4307 RNA binding protein RB 94.8 0.73 1.6E-05 47.8 13.9 92 20-117 4-101 (944)
123 KOG0115 RNA-binding protein p5 94.8 0.03 6.5E-07 51.4 3.7 62 20-81 33-97 (275)
124 KOG0112 Large RNA-binding prot 94.3 0.0096 2.1E-07 62.1 -0.6 72 20-92 374-448 (975)
125 PF08675 RNA_bind: RNA binding 94.2 0.24 5.1E-06 38.6 6.9 54 18-78 11-64 (87)
126 PF10309 DUF2414: Protein of u 93.7 0.27 5.8E-06 36.0 6.1 52 21-76 8-62 (62)
127 KOG2193 IGF-II mRNA-binding pr 93.5 0.056 1.2E-06 52.9 2.9 75 20-98 3-77 (584)
128 PF03467 Smg4_UPF3: Smg-4/UPF3 92.5 0.15 3.3E-06 43.7 3.9 85 16-100 5-101 (176)
129 KOG0128 RNA-binding protein SA 91.7 0.1 2.2E-06 54.4 2.2 86 20-115 738-826 (881)
130 KOG1365 RNA-binding protein Fu 91.7 0.56 1.2E-05 45.7 6.9 79 17-100 281-365 (508)
131 KOG0129 Predicted RNA-binding 90.8 0.83 1.8E-05 45.5 7.4 59 17-75 369-432 (520)
132 PF11767 SET_assoc: Histone ly 89.7 1.5 3.3E-05 32.3 6.3 50 29-83 11-60 (66)
133 KOG2591 c-Mpl binding protein, 89.5 1.5 3.3E-05 44.4 7.9 77 5-84 162-247 (684)
134 KOG2318 Uncharacterized conser 89.1 2.1 4.7E-05 43.4 8.7 78 15-95 173-306 (650)
135 KOG0128 RNA-binding protein SA 89.0 0.049 1.1E-06 56.7 -2.8 61 20-80 669-733 (881)
136 KOG2068 MOT2 transcription fac 87.9 0.21 4.5E-06 47.2 0.9 72 21-95 80-161 (327)
137 KOG1365 RNA-binding protein Fu 85.9 2.5 5.4E-05 41.4 6.8 57 18-74 161-224 (508)
138 KOG0804 Cytoplasmic Zn-finger 84.9 5 0.00011 39.8 8.5 66 16-83 74-142 (493)
139 PF03880 DbpA: DbpA RNA bindin 83.9 4.5 9.7E-05 29.6 6.1 58 28-93 11-73 (74)
140 KOG0129 Predicted RNA-binding 83.6 4.2 9E-05 40.7 7.4 97 20-121 261-376 (520)
141 KOG0105 Alternative splicing f 83.0 6.5 0.00014 35.2 7.7 71 10-83 105-177 (241)
142 KOG1924 RhoA GTPase effector D 73.5 23 0.0005 37.8 9.4 16 29-44 361-376 (1102)
143 KOG2135 Proteins containing th 70.6 3.1 6.8E-05 41.4 2.4 61 31-97 386-446 (526)
144 KOG2193 IGF-II mRNA-binding pr 67.1 0.41 8.9E-06 47.1 -4.4 73 21-96 83-156 (584)
145 PF10567 Nab6_mRNP_bdg: RNA-re 64.3 9.6 0.00021 35.9 4.1 54 16-71 15-79 (309)
146 KOG2891 Surface glycoprotein [ 61.4 1.4 3.1E-05 41.5 -1.7 52 30-81 173-247 (445)
147 KOG2236 Uncharacterized conser 60.5 93 0.002 31.2 10.3 12 35-46 247-258 (483)
148 COG5638 Uncharacterized conser 59.7 34 0.00073 34.1 7.1 77 17-94 145-295 (622)
149 KOG4660 Protein Mei2, essentia 57.2 21 0.00045 36.2 5.4 42 55-98 430-474 (549)
150 KOG2253 U1 snRNP complex, subu 56.4 6.4 0.00014 40.5 1.7 63 17-84 39-101 (668)
151 KOG1924 RhoA GTPase effector D 48.8 62 0.0014 34.7 7.3 17 175-191 556-572 (1102)
152 KOG2932 E3 ubiquitin ligase in 48.7 2.4E+02 0.0052 27.3 10.6 58 174-231 320-388 (389)
153 KOG2893 Zn finger protein [Gen 46.7 78 0.0017 29.6 6.9 8 20-27 12-19 (341)
154 KOG4019 Calcineurin-mediated s 45.9 41 0.00088 29.8 4.8 59 35-97 32-90 (193)
155 KOG4676 Splicing factor, argin 45.5 4.8 0.0001 39.4 -1.1 60 21-81 154-213 (479)
156 KOG0119 Splicing factor 1/bran 45.4 1.1E+02 0.0023 31.1 8.1 17 58-74 206-222 (554)
157 PF03468 XS: XS domain; Inter 44.8 26 0.00057 28.2 3.2 57 21-77 11-77 (116)
158 COG1259 Uncharacterized conser 44.5 60 0.0013 27.7 5.5 55 28-82 57-122 (151)
159 KOG4357 Uncharacterized conser 40.4 1.7E+02 0.0036 24.9 7.3 41 37-81 98-138 (164)
160 PF02714 DUF221: Domain of unk 39.0 33 0.00071 31.0 3.3 33 59-96 1-33 (325)
161 PF00398 RrnaAD: Ribosomal RNA 34.0 33 0.00072 30.5 2.5 33 20-52 99-133 (262)
162 PF02577 DNase-RNase: Bifuncti 33.9 58 0.0013 26.4 3.7 39 28-66 51-91 (135)
163 PF12631 GTPase_Cys_C: Catalyt 31.6 29 0.00063 25.3 1.4 14 29-42 59-72 (73)
164 PF08544 GHMP_kinases_C: GHMP 30.5 1.9E+02 0.0042 20.3 5.9 45 32-77 36-80 (85)
165 TIGR00755 ksgA dimethyladenosi 28.8 61 0.0013 28.5 3.2 33 21-53 97-129 (253)
166 PF13820 Nucleic_acid_bd: Puta 28.3 2E+02 0.0043 24.5 6.1 60 16-78 2-67 (149)
167 PF08156 NOP5NT: NOP5NT (NUC12 28.0 21 0.00044 26.1 0.1 39 33-77 27-65 (67)
168 COG0079 HisC Histidinol-phosph 27.1 85 0.0018 29.6 4.1 43 17-65 145-191 (356)
169 PRK11901 hypothetical protein; 26.4 1.8E+02 0.0039 27.9 6.0 47 30-77 254-305 (327)
170 PF07872 DUF1659: Protein of u 26.2 91 0.002 21.1 3.1 23 16-38 22-44 (47)
171 PF14893 PNMA: PNMA 25.9 52 0.0011 31.3 2.4 51 17-69 19-75 (331)
172 KOG2295 C2H2 Zn-finger protein 25.8 14 0.0003 37.7 -1.5 62 21-82 234-299 (648)
173 cd04882 ACT_Bt0572_2 C-termina 25.2 2.1E+02 0.0045 18.9 6.8 55 19-75 2-59 (65)
174 cd04908 ACT_Bt0572_1 N-termina 25.0 2.3E+02 0.0051 19.4 8.3 60 18-80 3-63 (66)
175 KOG2236 Uncharacterized conser 23.8 7.7E+02 0.017 24.9 11.3 13 58-70 261-273 (483)
176 COG0030 KsgA Dimethyladenosine 23.6 98 0.0021 28.5 3.7 27 22-48 99-125 (259)
177 PRK10629 EnvZ/OmpR regulon mod 23.1 2.9E+02 0.0063 22.6 6.0 46 30-78 50-95 (127)
178 KOG4210 Nuclear localization s 21.5 54 0.0012 30.3 1.6 75 18-95 88-166 (285)
179 KOG0984 Mitogen-activated prot 21.4 2.2E+02 0.0048 26.4 5.4 69 20-93 33-110 (282)
180 PF05042 Caleosin: Caleosin re 21.0 99 0.0021 27.0 3.0 33 14-46 63-109 (174)
181 KOG0132 RNA polymerase II C-te 20.9 8.9E+02 0.019 26.2 10.2 23 57-81 510-532 (894)
182 KOG4483 Uncharacterized conser 20.4 1.5E+02 0.0033 29.5 4.4 57 18-81 393-450 (528)
183 PF05929 Phage_GPO: Phage caps 20.1 2.3E+02 0.005 26.4 5.4 62 30-95 39-109 (276)
No 1
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.96 E-value=5e-30 Score=240.87 Aligned_cols=109 Identities=49% Similarity=0.720 Sum_probs=104.6
Q ss_pred CCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 11 KKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 11 ~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
....++.||+++|+|+.|+||.|+||+|||+||.|+||+.|+|+.+++|+|||.|.++|+.|+.+|+|++||++ ||+||
T Consensus 143 ~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLr 221 (492)
T KOG1190|consen 143 NEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLR 221 (492)
T ss_pred ccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCc-eeEEE
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred EEeecCCcceeecCCCCccccccCCccccc
Q 026793 91 LSYSRHTDLNVKAYSDKSRDYTVQDQTLLA 120 (233)
Q Consensus 91 I~fSk~~~L~Vr~nndksrDYT~p~~~~~~ 120 (233)
|+||++..|+||++||||||||+|+++.-.
T Consensus 222 Id~Sklt~LnvKynndkSRDyTnp~LP~gd 251 (492)
T KOG1190|consen 222 IDFSKLTDLNVKYNNDKSRDYTNPDLPVGD 251 (492)
T ss_pred eehhhcccceeeccccccccccCCCCCCCc
Confidence 999999999999999999999999866553
No 2
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.94 E-value=3.1e-26 Score=213.89 Aligned_cols=111 Identities=38% Similarity=0.612 Sum_probs=104.2
Q ss_pred CCCCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccce
Q 026793 9 GKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCK 88 (233)
Q Consensus 9 g~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~ 88 (233)
|.+...+++||+++|.|..|+||.|+||+|+...|+|+||+||+|++ .||+|||++++.|++|+.+|||.+||.| ||+
T Consensus 113 g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkng-VQAmVEFdsv~~AqrAk~alNGADIYsG-CCT 190 (494)
T KOG1456|consen 113 GDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG-VQAMVEFDSVEVAQRAKAALNGADIYSG-CCT 190 (494)
T ss_pred CCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccc-eeeEEeechhHHHHHHHhhccccccccc-cee
Confidence 45677899999999999999999999999999999999999999966 7999999999999999999999999998 999
Q ss_pred EEEEeecCCcceeecCCCCccccccCCcccccc
Q 026793 89 LHLSYSRHTDLNVKAYSDKSRDYTVQDQTLLAT 121 (233)
Q Consensus 89 LrI~fSk~~~L~Vr~nndksrDYT~p~~~~~~~ 121 (233)
|+|+|+|.++|+|.+|+..+||||+|++.....
T Consensus 191 LKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~ 223 (494)
T KOG1456|consen 191 LKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYD 223 (494)
T ss_pred EEEEecCcceeeeeecCCccccccCCCCCCCCC
Confidence 999999999999999999999999999765533
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.90 E-value=3e-23 Score=198.36 Aligned_cols=104 Identities=39% Similarity=0.649 Sum_probs=98.1
Q ss_pred CCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 13 ELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 13 ~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
..++++|+|+|.||.+.+|+++|+++|++||.|++|+|+++++.++|||||+|.++|.+|++.|||++|+++ ||+|+|+
T Consensus 91 ~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~-~~~l~v~ 169 (481)
T TIGR01649 91 AGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNG-CCTLKIE 169 (481)
T ss_pred CCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCC-ceEEEEE
Confidence 456789999999999999999999999999999999999877667999999999999999999999999987 8999999
Q ss_pred eecCCcceeecCCCCccccccCCcc
Q 026793 93 YSRHTDLNVKAYSDKSRDYTVQDQT 117 (233)
Q Consensus 93 fSk~~~L~Vr~nndksrDYT~p~~~ 117 (233)
||+...|+|+++++++||||+|+++
T Consensus 170 ~sk~~~l~v~~~~~~s~dyt~~~l~ 194 (481)
T TIGR01649 170 YAKPTRLNVKYNDDDSRDYTNPDLP 194 (481)
T ss_pred EecCCCceeEecccCCCCCcCCCCC
Confidence 9999999999999999999998875
No 4
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.77 E-value=1.1e-18 Score=164.72 Aligned_cols=114 Identities=37% Similarity=0.508 Sum_probs=93.8
Q ss_pred CCcCCCCCCCCCCCC-ceEEEEEeCC-CCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCC
Q 026793 2 QPTIGPDGKKKELES-NVLLASIENM-QYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGH 79 (233)
Q Consensus 2 ~~~~g~~g~~~~~pS-~VLlV~V~NL-~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~ 79 (233)
+.+.+.||+ .+.++ +++++ |.|| .+.||+|.|+.+|+.||+|+||+|+.++. ..|+|||.|..+|+.|+++|+|+
T Consensus 282 ~~a~~a~~~-~~~~~~n~vll-vsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~ 358 (492)
T KOG1190|consen 282 AGANAADGK-IESPSANVVLL-VSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGH 358 (492)
T ss_pred hhhcccccc-cccCCCceEEE-EecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcc
Confidence 567888955 56664 44443 4444 57899999999999999999999987665 58999999999999999999999
Q ss_pred eecCCccceEEEEeecCCcceeecCCCCcc----ccccCCcccccc
Q 026793 80 CIYDGGYCKLHLSYSRHTDLNVKAYSDKSR----DYTVQDQTLLAT 121 (233)
Q Consensus 80 ~Iy~gg~~~LrI~fSk~~~L~Vr~nndksr----DYT~p~~~~~~~ 121 (233)
+||+ |+|||.|||++.+++.++.++.+ ||.+..+++|..
T Consensus 359 ~l~g---k~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkk 401 (492)
T KOG1190|consen 359 KLYG---KKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKK 401 (492)
T ss_pred eecC---ceEEEeeccCccccCCCCCCccccccccCCCCchhhccC
Confidence 9998 79999999999999999776655 555555777743
No 5
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.53 E-value=8e-14 Score=115.05 Aligned_cols=75 Identities=13% Similarity=0.250 Sum_probs=65.8
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-.|||.||++.+|+++|.++|++||.|++|.|..+. ..++|||+|++.++|++|++.|||+.|.+ +.|+|+++
T Consensus 35 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G---r~l~V~~a 111 (144)
T PLN03134 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG---RHIRVNPA 111 (144)
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEeC
Confidence 357899999999999999999999999999876432 24799999999999999999999999865 68999987
Q ss_pred cC
Q 026793 95 RH 96 (233)
Q Consensus 95 k~ 96 (233)
+.
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 64
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.51 E-value=1.1e-13 Score=96.43 Aligned_cols=67 Identities=25% Similarity=0.419 Sum_probs=59.3
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEEcc-CC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEK-NG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k-~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
|+|.||+..+|+++|.++|+.||.|..+.+..+ .+ .++|||+|++.++|+.|++.|||..|.+ ++||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~---~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING---RKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc---cCcC
Confidence 689999999999999999999999999988764 22 4799999999999999999999988865 4654
No 7
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.51 E-value=9.4e-14 Score=95.77 Aligned_cols=56 Identities=34% Similarity=0.571 Sum_probs=50.4
Q ss_pred HHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 35 LNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 35 L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
|+++|++||+|++|.+++++ ..+|||+|++.++|++|++.|||..|.+ ++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g---~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNG---RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETT---EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEC
Confidence 78999999999999999877 3589999999999999999999999865 69999997
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.50 E-value=9.2e-14 Score=125.39 Aligned_cols=75 Identities=24% Similarity=0.294 Sum_probs=66.5
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
.|||.||++.+|+++|.++|++||.|++|+|..+. .+++|||+|++.++|..|++.|||..|.+ +.|+|+|..
T Consensus 271 ~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g---r~i~V~~~~ 347 (352)
T TIGR01661 271 CIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN---RVLQVSFKT 347 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEEcc
Confidence 47899999999999999999999999999887543 25799999999999999999999999854 699999976
Q ss_pred CC
Q 026793 96 HT 97 (233)
Q Consensus 96 ~~ 97 (233)
.+
T Consensus 348 ~~ 349 (352)
T TIGR01661 348 NK 349 (352)
T ss_pred CC
Confidence 54
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.50 E-value=1.8e-13 Score=131.25 Aligned_cols=100 Identities=22% Similarity=0.356 Sum_probs=78.9
Q ss_pred CCCceEEEEEeCCCC-CCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 14 LESNVLLASIENMQY-AVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y-~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
+++++| +|.||++ .+|+++|+++|+.||+|.+|+|+.++. ++|||+|.|.++|+.|++.|||..|++ ++|+|.
T Consensus 273 ~~~~~l--~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~-g~afV~f~~~~~A~~Ai~~lng~~l~g---~~l~v~ 346 (481)
T TIGR01649 273 GPGSVL--MVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKK-ETALIEMADPYQAQLALTHLNGVKLFG---KPLRVC 346 (481)
T ss_pred CCCCEE--EEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC-CEEEEEECCHHHHHHHHHHhCCCEECC---ceEEEE
Confidence 355555 5999997 699999999999999999998876543 599999999999999999999999976 599999
Q ss_pred eecCCcceeecC---CCC---ccccccCCcccc
Q 026793 93 YSRHTDLNVKAY---SDK---SRDYTVQDQTLL 119 (233)
Q Consensus 93 fSk~~~L~Vr~n---ndk---srDYT~p~~~~~ 119 (233)
+++.+.+...+. .+. .+||+.....++
T Consensus 347 ~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~ 379 (481)
T TIGR01649 347 PSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRF 379 (481)
T ss_pred EcccccccCCCCCcCcCCCcccccccCCccccC
Confidence 998876543221 111 267876555554
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=3.2e-13 Score=121.86 Aligned_cols=76 Identities=16% Similarity=0.305 Sum_probs=66.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
..|||.||++.+|+++|+++|++||.|++|+|..++ ..++|||+|.+.++|++|++.|||..|.+ .+|+|+|+
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g---~~i~v~~a 80 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQN---KTIKVSYA 80 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECC---eeEEEEee
Confidence 467899999999999999999999999999886532 24799999999999999999999999865 58999998
Q ss_pred cCC
Q 026793 95 RHT 97 (233)
Q Consensus 95 k~~ 97 (233)
+..
T Consensus 81 ~~~ 83 (352)
T TIGR01661 81 RPS 83 (352)
T ss_pred ccc
Confidence 644
No 11
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3.4e-13 Score=116.09 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=68.3
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
--.|||.||...+|+.+|..+|++||.|.+|-|-. +..+||||||+|..+|+.|...|||+.|.+ +.|+|++|+-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG---~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICG---SRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccC---ceEEEEeecCC
Confidence 34689999999999999999999999999987755 444799999999999999999999999976 58999998765
Q ss_pred c
Q 026793 98 D 98 (233)
Q Consensus 98 ~ 98 (233)
.
T Consensus 86 ~ 86 (195)
T KOG0107|consen 86 P 86 (195)
T ss_pred c
Confidence 4
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.42 E-value=8.1e-13 Score=123.15 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=67.1
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.-..|||.||++++|+++|+++|+.||.|++|+|..+. ..++|||+|.|.++|++|++.|||..|.+ .+|+|+
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g---r~i~V~ 182 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN---KRLKVS 182 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC---ceeeee
Confidence 34567899999999999999999999999999886532 23799999999999999999999999976 489999
Q ss_pred eecC
Q 026793 93 YSRH 96 (233)
Q Consensus 93 fSk~ 96 (233)
|++.
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 9864
No 13
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=4.2e-13 Score=107.58 Aligned_cols=86 Identities=26% Similarity=0.352 Sum_probs=70.5
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEEc-cCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCcc
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIFE-KNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTDL 99 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If~-k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~L 99 (233)
+||.||+++||.|+.++||++||.|..|+|-. ++..+.|||.|+|+.+|.+|.+.|+|..+.+ ..|.|-|-...+-
T Consensus 21 LyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~---ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 21 LYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN---RYLVVLYYQPEDA 97 (124)
T ss_pred EEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC---ceEEEEecCHHHH
Confidence 47999999999999999999999999999954 5556789999999999999999999999866 4788888666554
Q ss_pred eeecCCCCcc
Q 026793 100 NVKAYSDKSR 109 (233)
Q Consensus 100 ~Vr~nndksr 109 (233)
..+..+.+.|
T Consensus 98 ~~~~~~~k~~ 107 (124)
T KOG0114|consen 98 FKLMDSRKAR 107 (124)
T ss_pred HHHHHhHHhh
Confidence 4333343443
No 14
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=2.3e-11 Score=116.41 Aligned_cols=79 Identities=19% Similarity=0.320 Sum_probs=71.9
Q ss_pred CCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 14 LESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
.-++|-.|||.||..++|++.|..+|++||.|+||+..++ ||||.|.+.++|.+|++.|||++|.+ ..|.|.+
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG---~~iEvtL 327 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDG---SPIEVTL 327 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecC---ceEEEEe
Confidence 5678888899999999999999999999999999988754 99999999999999999999999966 4899999
Q ss_pred ecCCcc
Q 026793 94 SRHTDL 99 (233)
Q Consensus 94 Sk~~~L 99 (233)
||...-
T Consensus 328 AKP~~k 333 (506)
T KOG0117|consen 328 AKPVDK 333 (506)
T ss_pred cCChhh
Confidence 997653
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.37 E-value=1.8e-11 Score=118.41 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=68.1
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC---CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN---GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~---~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
...|||.||.+.+|+++|+++|++||+|.+|+|+.+. ..++|||+|++.++|++|++.|||+.|.+ ++|+|.++
T Consensus 285 ~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g---k~l~V~~a 361 (562)
T TIGR01628 285 GVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG---KPLYVALA 361 (562)
T ss_pred CCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC---ceeEEEec
Confidence 3458899999999999999999999999999887643 24799999999999999999999988754 69999998
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+.++
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 7654
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=5.6e-12 Score=114.71 Aligned_cols=75 Identities=24% Similarity=0.394 Sum_probs=67.8
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
-+|||+|+..-+|+|+|++.|+.||.|.+|+||++++ ||||.|++.|+|.+||..+||.+|.+ ..+|-.|.|...
T Consensus 165 tsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qG--YaFVrF~tkEaAahAIv~mNntei~G---~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 165 TSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQG--YAFVRFETKEAAAHAIVQMNNTEIGG---QLVRCSWGKEGD 239 (321)
T ss_pred ceEEeCCcCccccHHHHHHhcccCCcceEEEEecccc--eEEEEecchhhHHHHHHHhcCceeCc---eEEEEeccccCC
Confidence 4689999998899999999999999999999999866 99999999999999999999999965 477888877653
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.36 E-value=2.9e-12 Score=119.49 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=66.1
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
.|||.||++.+|+++|.++|++||+|++|.|..++. .++|||+|++.++|++|++.|||..|.++ ..+|+|.+++
T Consensus 195 ~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~-~~~l~V~~a~ 273 (346)
T TIGR01659 195 NLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG-SQPLTVRLAE 273 (346)
T ss_pred eeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCC-ceeEEEEECC
Confidence 578999999999999999999999999998875432 36999999999999999999999988664 4578888876
Q ss_pred C
Q 026793 96 H 96 (233)
Q Consensus 96 ~ 96 (233)
.
T Consensus 274 ~ 274 (346)
T TIGR01659 274 E 274 (346)
T ss_pred c
Confidence 4
No 18
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.2e-12 Score=108.28 Aligned_cols=73 Identities=15% Similarity=0.269 Sum_probs=64.3
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEE----ccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIF----EKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If----~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
--+|||+||.+-+||+.|++|||++|+|.+|+|- ++.-.++|||||.+.++|+.|++.|||..+-+ +.|+|++
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd---r~ir~D~ 112 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD---RPIRIDW 112 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc---cceeeec
Confidence 3467899999999999999999999999999882 33335799999999999999999999999866 5899886
No 19
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.34 E-value=6.9e-12 Score=88.81 Aligned_cols=63 Identities=29% Similarity=0.383 Sum_probs=54.9
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecC
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYD 83 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~ 83 (233)
|+|+||++.+|+++|.++|+.||.|.+|.+...+. .++|||+|.+.++|.+|++.++|..|.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 68999999999999999999999999998876432 4799999999999999999999888854
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.33 E-value=6.8e-12 Score=113.46 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=64.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
-.|||+||.+.+|+++|+++|+.||+|++|.|..++ .+++|||+|+|.++|+.|+. |||..|.+ +.|+|+.++.
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~g---r~V~Vt~a~~ 79 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVD---QSVTITPAED 79 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCC---ceEEEEeccC
Confidence 478899999999999999999999999999886543 35799999999999999995 99999966 4888888654
No 21
>PLN03213 repressor of silencing 3; Provisional
Probab=99.32 E-value=6.9e-12 Score=121.70 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=73.5
Q ss_pred CCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCH--HHHHHHHHHhcCCeecCCccceEE
Q 026793 13 ELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDI--TTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 13 ~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~--esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
+......+|||+||.|.||+++|..+|+.||.|.+|.|.++++++||||+|.+. .++.+||+.|||..+.++ .|+
T Consensus 5 es~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR---~LK 81 (759)
T PLN03213 5 SSGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG---RLR 81 (759)
T ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCc---eeE
Confidence 334456899999999999999999999999999999888777789999999987 789999999999999764 999
Q ss_pred EEeecCCc
Q 026793 91 LSYSRHTD 98 (233)
Q Consensus 91 I~fSk~~~ 98 (233)
|.-||..-
T Consensus 82 VNKAKP~Y 89 (759)
T PLN03213 82 LEKAKEHY 89 (759)
T ss_pred EeeccHHH
Confidence 99988653
No 22
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.31 E-value=4.5e-12 Score=112.06 Aligned_cols=85 Identities=20% Similarity=0.382 Sum_probs=73.5
Q ss_pred CCCceEEEEEeCCCCCCCHHHHHH----hhccCCceEEEEEEccCC-CeeEEEEeCCHHHHHHHHHHhcCCeecCCccce
Q 026793 14 LESNVLLASIENMQYAVTVDVLNT----VFSAFGTVQKVAIFEKNG-GTQALIQYPDITTAAVAKESLEGHCIYDGGYCK 88 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~VTed~L~~----iFS~yG~V~kI~If~k~~-~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~ 88 (233)
.++. +|||.||++.|..++|.. |||.||+|++|+.++... +++|||.|.+.+.|..|+.+|+|..+|+. .
T Consensus 7 ~pn~--TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK---~ 81 (221)
T KOG4206|consen 7 NPNG--TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGK---P 81 (221)
T ss_pred CCCc--eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCc---h
Confidence 4555 788999999999998765 999999999999986443 58999999999999999999999999996 9
Q ss_pred EEEEeecCCcceeec
Q 026793 89 LHLSYSRHTDLNVKA 103 (233)
Q Consensus 89 LrI~fSk~~~L~Vr~ 103 (233)
|||+||+.+.-.+.+
T Consensus 82 mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIAQ 96 (221)
T ss_pred hheecccCccchhhc
Confidence 999999987644443
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.31 E-value=7.3e-12 Score=121.16 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=65.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
.|||.||++++|+++|+++|++||.|++|+|.++.. .++|||+|.+.++|++|++.||+..|.+ +.|+|.|++
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~g---k~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGG---KPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---eeEEeeccc
Confidence 589999999999999999999999999998875432 4799999999999999999999999976 489998875
No 24
>smart00362 RRM_2 RNA recognition motif.
Probab=99.30 E-value=2e-11 Score=82.85 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=59.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC--CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN--GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~--~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
+|+|.||+..++.++|.++|++||.|.+|.+..+. ..++|||+|.+.++|+.|++.|+|..|.+ ++|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~---~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG---RPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC---EEEee
Confidence 37899999999999999999999999999887654 23689999999999999999999988854 46655
No 25
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.28 E-value=5.5e-12 Score=111.39 Aligned_cols=80 Identities=21% Similarity=0.344 Sum_probs=70.4
Q ss_pred CCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
-.-+..|.|.||.|.+|.|+|+.+|.+||.|-+|.|..+. ..+||||.|.+..+|++|+++|||..|.+ ..|+
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg---Relr 86 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG---RELR 86 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc---ceee
Confidence 4457888899999999999999999999999999996533 35799999999999999999999998854 6999
Q ss_pred EEeecCC
Q 026793 91 LSYSRHT 97 (233)
Q Consensus 91 I~fSk~~ 97 (233)
|++++..
T Consensus 87 Vq~aryg 93 (256)
T KOG4207|consen 87 VQMARYG 93 (256)
T ss_pred ehhhhcC
Confidence 9998854
No 26
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.5e-11 Score=110.48 Aligned_cols=88 Identities=19% Similarity=0.348 Sum_probs=71.5
Q ss_pred cCCCCCCCCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCC
Q 026793 4 TIGPDGKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGH 79 (233)
Q Consensus 4 ~~g~~g~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~ 79 (233)
++|.|.+... -++.+ -|.||..+.++++|.+||.+||.|.+|.+-+++ . .++|||.|.+.++|++||+.|||+
T Consensus 178 ~~g~~~R~R~-D~~tv--RvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~ 254 (270)
T KOG0122|consen 178 ASGSDMRERD-DEATV--RVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY 254 (270)
T ss_pred ccccccccCC-cccee--EEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc
Confidence 3444555444 33334 499999999999999999999999999876543 2 479999999999999999999998
Q ss_pred eecCCccceEEEEeecCC
Q 026793 80 CIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 80 ~Iy~gg~~~LrI~fSk~~ 97 (233)
-+++ -.|+|+|||.+
T Consensus 255 gyd~---LILrvEwskP~ 269 (270)
T KOG0122|consen 255 GYDN---LILRVEWSKPS 269 (270)
T ss_pred ccce---EEEEEEecCCC
Confidence 8654 58999999875
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.28 E-value=1.6e-11 Score=121.57 Aligned_cols=75 Identities=21% Similarity=0.422 Sum_probs=67.2
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccC--CceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAF--GTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~y--G~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
++-.|||.||.+.+|+++|.++|++| |+|++|.+.+ .+|||+|++.++|++|++.|||..|.+ +.|+|+|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r----gfAFVeF~s~e~A~kAi~~lnG~~i~G---r~I~V~~A 304 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR----DYAFVHFEDREDAVKAMDELNGKELEG---SEIEVTLA 304 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec----CeEEEEeCCHHHHHHHHHHhCCCEECC---EEEEEEEc
Confidence 45568899999999999999999999 9999997763 389999999999999999999999854 69999999
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+..+
T Consensus 305 kp~~ 308 (578)
T TIGR01648 305 KPVD 308 (578)
T ss_pred cCCC
Confidence 8754
No 28
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.26 E-value=3.6e-11 Score=107.77 Aligned_cols=74 Identities=20% Similarity=0.269 Sum_probs=64.2
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC-CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG-GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~-~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
..+|+|.||.+.+|+++|+++|+.||+|++|.|.+++. +.+|||+|.|.++|+.|+ .|||..|.+. .|.|.-..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~---~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQ---RVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCc---eEEEEeCc
Confidence 35788999999999999999999999999999886543 469999999999999999 5999999774 67777544
No 29
>smart00360 RRM RNA recognition motif.
Probab=99.26 E-value=3.1e-11 Score=81.42 Aligned_cols=66 Identities=24% Similarity=0.386 Sum_probs=57.1
Q ss_pred EeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 23 IENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 23 V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
|.||+..+++++|.++|+.||.|.++.+..+.. .++|||+|.+.++|..|++.|+|..|.+ .+|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~---~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG---RPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC---cEEEe
Confidence 578999999999999999999999998876432 4699999999999999999999988854 46665
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.25 E-value=2.7e-11 Score=113.61 Aligned_cols=76 Identities=21% Similarity=0.405 Sum_probs=66.9
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
..+|||.||++.+|+++|.++|++||.|++|.|..+.. .++|||+|.+.++|.+|++.|||..|.+ ++|+|.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g---~~i~v~~ 262 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAG---RPIKVGY 262 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECC---EEEEEEE
Confidence 35678999999999999999999999999998865332 4799999999999999999999999854 6999999
Q ss_pred ecC
Q 026793 94 SRH 96 (233)
Q Consensus 94 Sk~ 96 (233)
++.
T Consensus 263 a~~ 265 (457)
T TIGR01622 263 AQD 265 (457)
T ss_pred ccC
Confidence 873
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.24 E-value=3.4e-11 Score=114.16 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=66.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-.|||.||++.+|+++|.++|+.||.|+.+.|+.+. ..++|||+|.+.++|..|++.|||..|++ ++|+|.++
T Consensus 296 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~---~~l~v~~a 372 (509)
T TIGR01642 296 DRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD---NKLHVQRA 372 (509)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEC
Confidence 357899999999999999999999999999876532 24799999999999999999999999976 48999998
Q ss_pred cCC
Q 026793 95 RHT 97 (233)
Q Consensus 95 k~~ 97 (233)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 654
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.23 E-value=2.4e-10 Score=113.84 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=66.5
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
+.-+|||.||++.+++++|.++|++||.|++++|.++. ..++|||+|++.++|.+|++.|||.+|.+ ..|+|.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgG---r~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG---QYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCC---eEEEEE
Confidence 34578999999999999999999999999999886532 24799999999999999999999999965 589988
Q ss_pred eec
Q 026793 93 YSR 95 (233)
Q Consensus 93 fSk 95 (233)
++.
T Consensus 280 kAi 282 (612)
T TIGR01645 280 KCV 282 (612)
T ss_pred ecC
Confidence 765
No 33
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.4e-11 Score=107.54 Aligned_cols=78 Identities=18% Similarity=0.364 Sum_probs=68.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC-CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG-GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~-~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
--.|+|.||+.+|.+.+|..||.|||.|..|.+-.+.. -.+|||||+|..+|+.|+..-||.++ ++ |.|||+|++.
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdy-dg--~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDY-DG--CRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhccccccc-Cc--ceEEEEeccC
Confidence 34689999999999999999999999999998755444 46999999999999999999999985 55 8999999986
Q ss_pred Cc
Q 026793 97 TD 98 (233)
Q Consensus 97 ~~ 98 (233)
-.
T Consensus 83 gr 84 (241)
T KOG0105|consen 83 GR 84 (241)
T ss_pred CC
Confidence 54
No 34
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.22 E-value=1.2e-10 Score=79.28 Aligned_cols=70 Identities=27% Similarity=0.387 Sum_probs=60.9
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
|+|.||+..+++++|.++|..||.|.++.+..... .++|||+|.+.++|..|++.|++..+.+ .+|.|.+
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~---~~~~v~~ 74 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG---RPLRVEF 74 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEeC
Confidence 67999999999999999999999999998876442 4699999999999999999999998754 4676653
No 35
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=4.4e-11 Score=111.14 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=71.5
Q ss_pred CCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEE-EEEccCC-CeeEEEEeCCHHHHHHHHHHhcCCeecCCccce
Q 026793 11 KKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKV-AIFEKNG-GTQALIQYPDITTAAVAKESLEGHCIYDGGYCK 88 (233)
Q Consensus 11 ~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI-~If~k~~-~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~ 88 (233)
+.+..+.--+|+|+||++...+-||.+.|.+||+|++| +||.+++ ++|+||.|++.++|++|.+.|||..|.+ ++
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG---Rk 165 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG---RK 165 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec---eE
Confidence 34444555678899999999999999999999999999 5576554 6899999999999999999999999976 58
Q ss_pred EEEEeecCC
Q 026793 89 LHLSYSRHT 97 (233)
Q Consensus 89 LrI~fSk~~ 97 (233)
|+|.-+..+
T Consensus 166 IEVn~ATar 174 (376)
T KOG0125|consen 166 IEVNNATAR 174 (376)
T ss_pred EEEeccchh
Confidence 888877654
No 36
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=3.9e-11 Score=100.33 Aligned_cols=72 Identities=14% Similarity=0.364 Sum_probs=63.2
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEE-EccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAI-FEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~I-f~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
|||.++....|++++++.|+.||.|++|.+ +++.. .+||||||++.++|+.|+++|||.+|.+. +|.|+|.-
T Consensus 75 i~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q---~v~VDw~F 150 (170)
T KOG0130|consen 75 IFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ---NVSVDWCF 150 (170)
T ss_pred EEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC---ceeEEEEE
Confidence 469999999999999999999999999966 34333 47999999999999999999999999885 88888754
No 37
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.16 E-value=1e-10 Score=116.48 Aligned_cols=75 Identities=13% Similarity=0.274 Sum_probs=64.5
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
..-+|||+||.+.+|+++|+++|++||.|++|.|..+. ..+||||+|++.++|++|++.|||+.|.+ ++|+|.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G---R~IkV~ 182 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG---RNIKVG 182 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEec---ceeeec
Confidence 34468999999999999999999999999999875432 25799999999999999999999999865 478886
Q ss_pred ee
Q 026793 93 YS 94 (233)
Q Consensus 93 fS 94 (233)
..
T Consensus 183 rp 184 (612)
T TIGR01645 183 RP 184 (612)
T ss_pred cc
Confidence 54
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=1.9e-10 Score=94.37 Aligned_cols=74 Identities=23% Similarity=0.366 Sum_probs=65.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
..|||.||++.+|+++|.++|.+||.|.+|.|..++ ..++|||+|.+.++|..|++.|+|..|.+. +|+|+++
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~---~~~v~~~ 192 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGR---PLRVQKA 192 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCc---eeEeecc
Confidence 677899999999999999999999999999775542 247999999999999999999999999764 8888885
Q ss_pred c
Q 026793 95 R 95 (233)
Q Consensus 95 k 95 (233)
.
T Consensus 193 ~ 193 (306)
T COG0724 193 Q 193 (306)
T ss_pred c
Confidence 4
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.13 E-value=1.8e-10 Score=114.15 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=59.6
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC---CCeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN---GGTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~---~~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
.--.|||.||+.++|+++|.++|++||.|.+|+|..+. ..++|||+|.+.++|++|++.|||..|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G 127 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG 127 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCC
Confidence 34568899999999999999999999999999876432 247999999999999999999999998654
No 40
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.12 E-value=3.1e-10 Score=106.51 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=64.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
.-+|||.||++.+|+++|.++|++||.|+.|.|..+. ..++|||+|.+.++|++|+. |||..|.+ +.|.|.+
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g---~~i~v~~ 164 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLG---RPIIVQS 164 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECC---eeeEEee
Confidence 4468899999999999999999999999999886532 24799999999999999997 89999876 5888887
Q ss_pred ecC
Q 026793 94 SRH 96 (233)
Q Consensus 94 Sk~ 96 (233)
++.
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 653
No 41
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.2e-10 Score=103.90 Aligned_cols=81 Identities=14% Similarity=0.287 Sum_probs=70.8
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEcc----CCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEK----NGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k----~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.--+|||+.|..+||+..||..|-.||+|..|.|.-+ +.++++||||+..|+|..||+.||+.+||+ ++|||.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G---rtirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG---RTIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc---eeEEEe
Confidence 3446789999999999999999999999999988432 225799999999999999999999999998 499999
Q ss_pred eecCCcce
Q 026793 93 YSRHTDLN 100 (233)
Q Consensus 93 fSk~~~L~ 100 (233)
|++..++.
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99987654
No 42
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=1.5e-09 Score=99.92 Aligned_cols=87 Identities=13% Similarity=0.250 Sum_probs=72.4
Q ss_pred CCCCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 9 GKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 9 g~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
.-+.+..-+-.+|||.-|+|.++|+.|...|++||.|++|.|+.++ ..+||||||++..+-..|.+..+|..|.+
T Consensus 92 ~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg- 170 (335)
T KOG0113|consen 92 NDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG- 170 (335)
T ss_pred CCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC-
Confidence 3344445667888999999999999999999999999999887643 24799999999999999999999999966
Q ss_pred ccceEEEEeecCCc
Q 026793 85 GYCKLHLSYSRHTD 98 (233)
Q Consensus 85 g~~~LrI~fSk~~~ 98 (233)
..|-|++-+-..
T Consensus 171 --rri~VDvERgRT 182 (335)
T KOG0113|consen 171 --RRILVDVERGRT 182 (335)
T ss_pred --cEEEEEeccccc
Confidence 467777765443
No 43
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=6.4e-11 Score=102.94 Aligned_cols=74 Identities=19% Similarity=0.329 Sum_probs=66.7
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.--+|||+||+|.+||.+|-.+||.||.|+.|.+.+++. .+|||.-|+|..+-..|.+.|||..|.+ +.|||+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g---RtirVD 110 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG---RTIRVD 110 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc---eeEEee
Confidence 346799999999999999999999999999998876443 4799999999999999999999999976 599998
Q ss_pred e
Q 026793 93 Y 93 (233)
Q Consensus 93 f 93 (233)
.
T Consensus 111 H 111 (219)
T KOG0126|consen 111 H 111 (219)
T ss_pred e
Confidence 5
No 44
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=1.1e-09 Score=107.35 Aligned_cols=75 Identities=24% Similarity=0.323 Sum_probs=67.6
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
+|+|.||++.+..++|..+||+||.|..|.|.++.+ .+||||+|.+..+|++|++.+||..|.+ ++|-|+||-.
T Consensus 119 rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~g---R~VAVDWAV~ 195 (678)
T KOG0127|consen 119 RLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDG---RPVAVDWAVD 195 (678)
T ss_pred eEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecC---ceeEEeeecc
Confidence 466999999999999999999999999999987654 3799999999999999999999999965 6999999864
Q ss_pred C
Q 026793 97 T 97 (233)
Q Consensus 97 ~ 97 (233)
.
T Consensus 196 K 196 (678)
T KOG0127|consen 196 K 196 (678)
T ss_pred c
Confidence 4
No 45
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.96 E-value=1.5e-09 Score=104.44 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=68.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEc-cCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFE-KNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~-k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
..|+|+|++|+++++.|..+|+..|.|..+++.. +.. ++++||||.+.++|+.|++.|||.++.+ ++|+|+|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g---r~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG---RKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC---ceEEeecc
Confidence 6789999999999999999999999999997753 322 4799999999999999999999999965 59999998
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
..++
T Consensus 96 ~~~~ 99 (435)
T KOG0108|consen 96 SNRK 99 (435)
T ss_pred cccc
Confidence 7654
No 46
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.94 E-value=2.2e-09 Score=101.96 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=61.4
Q ss_pred CCceEEEEEeCCCCC----------CCHHHHHHhhccCCceEEEEEEccC-------CCeeEEEEeCCHHHHHHHHHHhc
Q 026793 15 ESNVLLASIENMQYA----------VTVDVLNTVFSAFGTVQKVAIFEKN-------GGTQALIQYPDITTAAVAKESLE 77 (233)
Q Consensus 15 pS~VLlV~V~NL~y~----------VTed~L~~iFS~yG~V~kI~If~k~-------~~~~AFVEF~d~esA~~A~~~LN 77 (233)
+++||. |.|+... ...++|+++|++||.|++|+|...+ +.++|||+|++.++|++|++.||
T Consensus 408 ~s~v~~--l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln 485 (509)
T TIGR01642 408 PTKVVQ--LTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMN 485 (509)
T ss_pred CceEEE--eccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcC
Confidence 556655 7888531 1236789999999999999987532 13689999999999999999999
Q ss_pred CCeecCCccceEEEEeecCC
Q 026793 78 GHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 78 G~~Iy~gg~~~LrI~fSk~~ 97 (233)
|..|.+ +.|.|+|....
T Consensus 486 Gr~~~g---r~v~~~~~~~~ 502 (509)
T TIGR01642 486 GRKFND---RVVVAAFYGED 502 (509)
T ss_pred CCEECC---eEEEEEEeCHH
Confidence 999854 69999996543
No 47
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=2.4e-09 Score=97.71 Aligned_cols=84 Identities=12% Similarity=0.290 Sum_probs=72.7
Q ss_pred CCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccc
Q 026793 12 KELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYC 87 (233)
Q Consensus 12 ~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~ 87 (233)
+..-+...+|||+.|...|+.++|++.|.+||+|.+.+|.++.. ++|+||.|...++|++||+.|||+.| + .+
T Consensus 56 k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl-G--~R 132 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL-G--RR 132 (321)
T ss_pred CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee-c--cc
Confidence 33444589999999999999999999999999999998876543 58999999999999999999999998 3 37
Q ss_pred eEEEEeecCCc
Q 026793 88 KLHLSYSRHTD 98 (233)
Q Consensus 88 ~LrI~fSk~~~ 98 (233)
.||-.||..+.
T Consensus 133 ~IRTNWATRKp 143 (321)
T KOG0148|consen 133 TIRTNWATRKP 143 (321)
T ss_pred eeeccccccCc
Confidence 99999986553
No 48
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.92 E-value=6.4e-08 Score=97.94 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=63.7
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
+|+|+.|.-.|++.+|.++|..||.|++|++....+ +|||.+....+|++|++.|++..+.+ ..|+|.|+...
T Consensus 423 TLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~--cAfI~M~~RqdA~kalqkl~n~kv~~---k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 423 TLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRG--CAFIKMVRRQDAEKALQKLSNVKVAD---KTIKIAWAVGK 495 (894)
T ss_pred eeeeccccchhhHHHHHHHHHhcccceeEeeccCCc--eeEEEEeehhHHHHHHHHHhcccccc---eeeEEeeeccC
Confidence 456999999999999999999999999998765433 69999999999999999999999866 48888887643
No 49
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.89 E-value=2.6e-09 Score=98.27 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=65.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
..+||+||+.++++.+|..||.+||+|++..|.+. ++||..+|...|+.||..|+|..|.+ ..|+|+-||.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg---~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHG---VNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecc---eEEEEEecccc
Confidence 35789999999999999999999999999988753 79999999999999999999999976 48999988866
No 50
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3e-09 Score=100.16 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=68.2
Q ss_pred CCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccc
Q 026793 12 KELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYC 87 (233)
Q Consensus 12 ~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~ 87 (233)
..+|-|||+ |..|+.-+|.++|+-|||+||+|....+.++. . ..+|||||++.++.+.|.--|++.-|-+ +
T Consensus 235 ~~PPeNVLF--VCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD---r 309 (479)
T KOG0415|consen 235 VKPPENVLF--VCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD---R 309 (479)
T ss_pred cCCCcceEE--EEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc---c
Confidence 567889998 55565567888999999999999999666533 2 2599999999999999999999999976 5
Q ss_pred eEEEEeecCCc
Q 026793 88 KLHLSYSRHTD 98 (233)
Q Consensus 88 ~LrI~fSk~~~ 98 (233)
.|+|+||....
T Consensus 310 RIHVDFSQSVs 320 (479)
T KOG0415|consen 310 RIHVDFSQSVS 320 (479)
T ss_pred eEEeehhhhhh
Confidence 99999987653
No 51
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.87 E-value=3e-09 Score=92.41 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=65.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-+|||+||...+|++.|+++|-..|.|++|.|-+++ .++||||||.+.|+|+-|++.||...+|+. +|||.-+
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr---pIrv~ka 86 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR---PIRVNKA 86 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc---eeEEEec
Confidence 468899999999999999999999999999986533 257999999999999999999999999985 8887765
Q ss_pred c
Q 026793 95 R 95 (233)
Q Consensus 95 k 95 (233)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 5
No 52
>smart00361 RRM_1 RNA recognition motif.
Probab=98.86 E-value=1e-08 Score=74.14 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=46.1
Q ss_pred HHHHHHhhc----cCCceEEEE--EEccC-----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 32 VDVLNTVFS----AFGTVQKVA--IFEKN-----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 32 ed~L~~iFS----~yG~V~kI~--If~k~-----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
+++|.++|+ +||.|.+|. +..+. ..+++||+|.+.++|.+|++.|||+.|.+ +.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g---r~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG---RTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---EEEEe
Confidence 578888888 999999984 34332 25799999999999999999999998854 46654
No 53
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=1.4e-08 Score=92.65 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=65.9
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.--.|||-||..+.+|..|+++|+.||.|..|+|.++- +.+++||.|.+.+||..||..|||..+-+ +.|.|.
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~---rvLQVs 353 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD---RVLQVS 353 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc---eEEEEE
Confidence 34567899999999999999999999999999886533 35899999999999999999999999854 588888
Q ss_pred eec
Q 026793 93 YSR 95 (233)
Q Consensus 93 fSk 95 (233)
|-.
T Consensus 354 FKt 356 (360)
T KOG0145|consen 354 FKT 356 (360)
T ss_pred Eec
Confidence 843
No 54
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=9.9e-09 Score=96.81 Aligned_cols=70 Identities=20% Similarity=0.300 Sum_probs=61.0
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
|+|.||+..+|..+|+.+|+.||+|+.+++..+.. +++ ||+|++.++|++|++.|||..+.+. +|-|.-.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k---ki~vg~~ 150 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGK---KIYVGLF 150 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCC---eeEEeec
Confidence 89999999999999999999999999998876443 478 9999999999999999999888764 6665533
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=3.7e-09 Score=101.25 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=67.8
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC---CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN---GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~---~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
.|||+-|.-.+||.++++||++||.|+++.|.++. .+++|||.|++.|.|..||++|||..-..|+..+|-|-|+..
T Consensus 126 KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADt 205 (510)
T KOG0144|consen 126 KLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADT 205 (510)
T ss_pred hhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEeccc
Confidence 35699999999999999999999999999988643 358999999999999999999999887666333799999876
Q ss_pred Cc
Q 026793 97 TD 98 (233)
Q Consensus 97 ~~ 98 (233)
++
T Consensus 206 qk 207 (510)
T KOG0144|consen 206 QK 207 (510)
T ss_pred CC
Confidence 54
No 56
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=1.5e-08 Score=97.16 Aligned_cols=87 Identities=11% Similarity=0.222 Sum_probs=74.5
Q ss_pred CCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccc
Q 026793 12 KELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYC 87 (233)
Q Consensus 12 ~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~ 87 (233)
+.+....+.+||.-++-..||.+|+++|.+||.|.+|.|.+++. .++|||.|.+.++|.+|+++|+++..+.|...
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 34456678889999999999999999999999999998887653 47999999999999999999999998887566
Q ss_pred eEEEEeecCCc
Q 026793 88 KLHLSYSRHTD 98 (233)
Q Consensus 88 ~LrI~fSk~~~ 98 (233)
.|.|-|+..++
T Consensus 108 pvqvk~Ad~E~ 118 (510)
T KOG0144|consen 108 PVQVKYADGER 118 (510)
T ss_pred ceeecccchhh
Confidence 77777776443
No 57
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.76 E-value=4.8e-09 Score=93.92 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=65.7
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
+-+.++||.||..+||||+|.++|++|-....++|..|++...||++|++++.|+.||..|+|..|-.....-|+|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s~~drgg~~i 283 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHI 283 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceeccccCCCccc
Confidence 4567789999999999999999999999999999988888889999999999999999999998875432223444
No 58
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=1.7e-08 Score=90.36 Aligned_cols=68 Identities=18% Similarity=0.330 Sum_probs=57.4
Q ss_pred CCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEc-cCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFE-KNG---GTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~-k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
..+...|||++|.|.++.|.|++.|++||+|++.+|.. |+. ++++||.|.|.++|++|.+.-| .|.+|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~--piIdG 80 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN--PIIDG 80 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC--Ccccc
Confidence 45788899999999999999999999999999986654 432 4899999999999999998654 45555
No 59
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=3.9e-08 Score=89.89 Aligned_cols=77 Identities=18% Similarity=0.329 Sum_probs=67.9
Q ss_pred EeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 23 IENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 23 V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
|.=|+-..|.|+|+.+|+..|+|+++++.+++- -+|+||.|-+.++|++|++.|||-.+-. .+|+|+|+|...
T Consensus 46 vNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~---KTIKVSyARPSs 122 (360)
T KOG0145|consen 46 VNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQN---KTIKVSYARPSS 122 (360)
T ss_pred eeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeecc---ceEEEEeccCCh
Confidence 666778999999999999999999999887663 2799999999999999999999999876 499999999876
Q ss_pred ceee
Q 026793 99 LNVK 102 (233)
Q Consensus 99 L~Vr 102 (233)
-.+|
T Consensus 123 ~~Ik 126 (360)
T KOG0145|consen 123 DSIK 126 (360)
T ss_pred hhhc
Confidence 5554
No 60
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.65 E-value=3.5e-08 Score=85.78 Aligned_cols=76 Identities=24% Similarity=0.366 Sum_probs=64.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEE-EEEcc----CCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKV-AIFEK----NGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI-~If~k----~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
.+||.||...|+|..||.+||+||.+.+. .|++. +..+++||.|++.|.+..|+..+||+-+.+ ++++|+|+
T Consensus 98 nlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~n---r~itv~ya 174 (203)
T KOG0131|consen 98 NLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCN---RPITVSYA 174 (203)
T ss_pred cccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcC---CceEEEEE
Confidence 46799999999999999999999999875 45432 234699999999999999999999998865 58999998
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+.++
T Consensus 175 ~k~~ 178 (203)
T KOG0131|consen 175 FKKD 178 (203)
T ss_pred EecC
Confidence 7653
No 61
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.62 E-value=4.6e-08 Score=95.68 Aligned_cols=72 Identities=22% Similarity=0.387 Sum_probs=61.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEcc--CC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEK--NG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k--~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
..++|+||.+++|+++|..||..||.|+.|.+..+ ++ .+|+||+|.+.++|.+|++.|||.+|-+ +.|+|..
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAG---r~ikV~~ 354 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAG---RLIKVSV 354 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecC---ceEEEEE
Confidence 33789999999999999999999999999977554 32 4799999999999999999999988865 4677654
No 62
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=4.6e-08 Score=98.00 Aligned_cols=88 Identities=22% Similarity=0.358 Sum_probs=77.8
Q ss_pred CCCCCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecC
Q 026793 8 DGKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYD 83 (233)
Q Consensus 8 ~g~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~ 83 (233)
.|++.....++..|.|.||++..|..++++||+.||.|..|.|..+.+ .++|||+|-+..+|.+|+++|.+..+|+
T Consensus 603 ~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG 682 (725)
T KOG0110|consen 603 VGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYG 682 (725)
T ss_pred cccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceec
Confidence 457677766777888999999999999999999999999999987633 3689999999999999999999999998
Q ss_pred CccceEEEEeecCCc
Q 026793 84 GGYCKLHLSYSRHTD 98 (233)
Q Consensus 84 gg~~~LrI~fSk~~~ 98 (233)
. .|.|+|++.+.
T Consensus 683 R---rLVLEwA~~d~ 694 (725)
T KOG0110|consen 683 R---RLVLEWAKSDN 694 (725)
T ss_pred h---hhheehhccch
Confidence 4 89999998775
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.7e-07 Score=88.44 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=63.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
.++|+ ++||+.+|+++|+++|.|++|++-++. ..++|||.|.+.++|++|++.||...|.+. .|||.+|..+.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~---~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGK---PIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCc---EEEeehhccCC
Confidence 35677 899999999999999999999765433 347999999999999999999999988774 99999997664
No 64
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=1.2e-07 Score=95.08 Aligned_cols=72 Identities=25% Similarity=0.391 Sum_probs=64.7
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC-------CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG-------GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~-------~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
|||.||++..|.++|..+|+++|.|+.|.|..+.+ .+++||||.+.++|+.|++.|+|+-|-+ +.|.|.+
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG---H~l~lk~ 594 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG---HKLELKI 594 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC---ceEEEEe
Confidence 78999999999999999999999999998865443 2799999999999999999999999854 6888888
Q ss_pred ec
Q 026793 94 SR 95 (233)
Q Consensus 94 Sk 95 (233)
|.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 65
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=2.9e-07 Score=86.38 Aligned_cols=77 Identities=17% Similarity=0.343 Sum_probs=68.8
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
..+-+|||.+|...|++.+|++.|-+||.|+.|+++.+.. .|||+|.+.++|++|.+.+-..-+-+| .+|.|.|++
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G--~Rl~i~Wg~ 301 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVING--FRLKIKWGR 301 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecc--eEEEEEeCC
Confidence 4577899999999999999999999999999999988765 699999999999999988777666676 799999988
Q ss_pred C
Q 026793 96 H 96 (233)
Q Consensus 96 ~ 96 (233)
.
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 66
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=7.2e-07 Score=86.03 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=65.8
Q ss_pred CCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEcc-C---CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceE
Q 026793 14 LESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEK-N---GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKL 89 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k-~---~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~L 89 (233)
++..=--|||+.|+-++.||+|.-+|.+-|+|-.++|+.+ . +++||||.|.+.++|++|++.||+++|-.| ..|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G--K~i 156 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPG--KLL 156 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCC--CEe
Confidence 3445556889999999999999999999999999987654 2 358999999999999999999999999887 444
Q ss_pred EEEee
Q 026793 90 HLSYS 94 (233)
Q Consensus 90 rI~fS 94 (233)
+|.-|
T Consensus 157 gvc~S 161 (506)
T KOG0117|consen 157 GVCVS 161 (506)
T ss_pred EEEEe
Confidence 44433
No 67
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=7.6e-08 Score=94.28 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=56.4
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
.|+|.||+..|++++|+++|+.||+|..|..-.. ..++.||||-|+.+|+.|+++||+.+|.+.
T Consensus 77 ~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 77 TLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-KRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred eEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-cCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 4569999999999999999999999999765333 236899999999999999999999999875
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.49 E-value=1.9e-07 Score=86.17 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=62.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
-.|+|.|+...+|.++|++.|.+||.|.+..|.++ ++||.|+-.++|..|++.|||..+-+ .+|+|+.|..
T Consensus 79 tkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l~~~~~~g---k~m~vq~sts 149 (346)
T KOG0109|consen 79 TKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGLDNTEFQG---KRMHVQLSTS 149 (346)
T ss_pred cccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhccccccccc---ceeeeeeecc
Confidence 34569999999999999999999999999888653 89999999999999999999999865 4888887654
No 69
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.48 E-value=8.6e-07 Score=79.64 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=69.8
Q ss_pred CCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEE--EccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccce
Q 026793 14 LESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAI--FEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCK 88 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~I--f~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~ 88 (233)
.+..|-++||..|+.+|...+||.+|..|-.-+...| -.|.+ ..+|||.|.+..+|..|+++|||..|...+..+
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 3456889999999999999999999999977665433 23332 368999999999999999999999987663458
Q ss_pred EEEEeecCCc
Q 026793 89 LHLSYSRHTD 98 (233)
Q Consensus 89 LrI~fSk~~~ 98 (233)
|||+++|...
T Consensus 110 LhiElAKSNt 119 (284)
T KOG1457|consen 110 LHIELAKSNT 119 (284)
T ss_pred eEeeehhcCc
Confidence 9999998764
No 70
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.48 E-value=9.7e-07 Score=83.94 Aligned_cols=102 Identities=18% Similarity=0.291 Sum_probs=81.6
Q ss_pred CCCceEEEEEeCCC-CCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 14 LESNVLLASIENMQ-YAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 14 ~pS~VLlV~V~NL~-y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.++.|+-| -.|. ..++.|.|++||..||+|+||+.++.+. +.|+||+.|..+-++|+..||+..++++ +|.|-
T Consensus 285 ~~g~VmMV--yGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-gtamVemgd~~aver~v~hLnn~~lfG~---kl~v~ 358 (494)
T KOG1456|consen 285 APGCVMMV--YGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-GTAMVEMGDAYAVERAVTHLNNIPLFGG---KLNVC 358 (494)
T ss_pred CCCcEEEE--EeccccccchhhhhhhhhhcCceeeEEEeeccc-ceeEEEcCcHHHHHHHHHHhccCccccc---eEEEe
Confidence 46778874 4554 5788999999999999999998876555 4799999999999999999999999986 89999
Q ss_pred eecCCcceee------cCCCCccccccCCcccccc
Q 026793 93 YSRHTDLNVK------AYSDKSRDYTVQDQTLLAT 121 (233)
Q Consensus 93 fSk~~~L~Vr------~nndksrDYT~p~~~~~~~ 121 (233)
+||...+.-- .-+-..+||+.+...||..
T Consensus 359 ~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFss 393 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSS 393 (494)
T ss_pred eccccccccCCceecCCCCcchhhcccccccccCC
Confidence 9986643321 1233567999988888854
No 71
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.48 E-value=4.2e-07 Score=89.49 Aligned_cols=77 Identities=21% Similarity=0.350 Sum_probs=62.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHh-----cCCeecCCccceE
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESL-----EGHCIYDGGYCKL 89 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~L-----NG~~Iy~gg~~~L 89 (233)
-+|||.||+|++|++.|.+.|++||.|.-++|..... .+.|||.|.+..+|.+||++. .|.-|+.| +-|
T Consensus 293 ~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G--R~L 370 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG--RLL 370 (678)
T ss_pred ceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec--cEE
Confidence 4688999999999999999999999999876654332 378999999999999999987 35456676 678
Q ss_pred EEEeecCC
Q 026793 90 HLSYSRHT 97 (233)
Q Consensus 90 rI~fSk~~ 97 (233)
+|+-+-.+
T Consensus 371 kv~~Av~R 378 (678)
T KOG0127|consen 371 KVTLAVTR 378 (678)
T ss_pred eeeeccch
Confidence 88876433
No 72
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=2.4e-07 Score=88.01 Aligned_cols=72 Identities=15% Similarity=0.362 Sum_probs=61.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEcc----CCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEK----NGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k----~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
+-+|||+.+.|++.||.|+..|..||.|++|.+..+ +..+||||||+=.|.|+.|++.|||..+ +| +.|+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml-GG--RNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML-GG--RNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc-cC--cccccc
Confidence 346899999999999999999999999999988532 2247999999999999999999999887 43 466655
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=3.4e-07 Score=84.11 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=66.1
Q ss_pred CCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceE
Q 026793 14 LESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKL 89 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~L 89 (233)
++..-| ||-.|+-+.+..+|.+.|-.||.|++.++|-++ .+.++||.|++..+|+.||++|||+.|-. .+|
T Consensus 283 PeGCNl--FIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM---KRL 357 (371)
T KOG0146|consen 283 PEGCNL--FIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM---KRL 357 (371)
T ss_pred CCcceE--EEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh---hhh
Confidence 333444 578899999999999999999999999888543 24689999999999999999999999943 355
Q ss_pred EEEeecCCcceeecCCCCcccc
Q 026793 90 HLSYSRHTDLNVKAYSDKSRDY 111 (233)
Q Consensus 90 rI~fSk~~~L~Vr~nndksrDY 111 (233)
+|+ +|+.+|.+|-|
T Consensus 358 KVQ--------LKRPkdanRPY 371 (371)
T KOG0146|consen 358 KVQ--------LKRPKDANRPY 371 (371)
T ss_pred hhh--------hcCccccCCCC
Confidence 544 44555555544
No 74
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.29 E-value=4.8e-07 Score=80.24 Aligned_cols=71 Identities=18% Similarity=0.324 Sum_probs=62.8
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
..|+|++|.|.+.+.+|..+|..||.|..|.+ ++ +++||+|+|..+|..|+..|||+.|.+. ++.|++++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m--k~--gf~fv~fed~rda~Dav~~l~~~~l~~e---~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM--KN--GFGFVEFEDPRDADDAVHDLDGKELCGE---RLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee--ec--ccceeccCchhhhhcccchhcCceecce---eeeeecccc
Confidence 46899999999999999999999999999877 32 4789999999999999999999998654 488899874
No 75
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.29 E-value=3.3e-06 Score=76.13 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=66.9
Q ss_pred CCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEE-ccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceE
Q 026793 13 ELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIF-EKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKL 89 (233)
Q Consensus 13 ~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If-~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~L 89 (233)
..+++...|.|.||+|.|+.++|.++|..||.++++.+. ++.+ .+.|-|.|+..++|+.|++.+||..+-+ ..|
T Consensus 78 ~~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG---~~m 154 (243)
T KOG0533|consen 78 INETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDG---RPM 154 (243)
T ss_pred ccCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCC---cee
Confidence 466777788899999999999999999999999998774 4443 2689999999999999999999977754 367
Q ss_pred EEEeecC
Q 026793 90 HLSYSRH 96 (233)
Q Consensus 90 rI~fSk~ 96 (233)
+|.-...
T Consensus 155 k~~~i~~ 161 (243)
T KOG0533|consen 155 KIEIISS 161 (243)
T ss_pred eeEEecC
Confidence 7665443
No 76
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.28 E-value=2.9e-06 Score=75.48 Aligned_cols=79 Identities=15% Similarity=0.371 Sum_probs=68.2
Q ss_pred CCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 12 KELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 12 ~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
..+++++|+ +.||+..++.+.|..+|..|...++|++..-.. ..|||||++...|..|+++|+|..|--. ..|+|
T Consensus 142 ~~ppn~ilf--~~niP~es~~e~l~~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it~~--~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILF--LTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKITKK--NTMQI 216 (221)
T ss_pred CCCCceEEE--EecCCcchhHHHHHHHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceeccC--ceEEe
Confidence 356777776 999999999999999999999999998876333 4799999999999999999999999643 58999
Q ss_pred Eeec
Q 026793 92 SYSR 95 (233)
Q Consensus 92 ~fSk 95 (233)
.|++
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 9876
No 77
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.24 E-value=4.8e-07 Score=80.97 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=61.8
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
++|+|.|+...|||+.|.++|..-|.|.||.|-+.+. .-+|||+|.+..+-..|++.|||.++|+. .|.|.+
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~---e~q~~~ 83 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEED---EEQRTL 83 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccc---hhhccc
Confidence 4566999999999999999999999999999975443 34899999999999999999999999986 444443
No 78
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.18 E-value=4.6e-06 Score=78.47 Aligned_cols=76 Identities=21% Similarity=0.297 Sum_probs=66.0
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceE--------EEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccc
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQ--------KVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYC 87 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~--------kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~ 87 (233)
-.|||+||+.+||.+++.++|++||-|. +|++++.+. .+=|+|.|--.++-+.|++.||+.+|.+ |
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg---~ 211 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG---K 211 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC---c
Confidence 4599999999999999999999999996 467776554 2579999999999999999999999864 7
Q ss_pred eEEEEeecCC
Q 026793 88 KLHLSYSRHT 97 (233)
Q Consensus 88 ~LrI~fSk~~ 97 (233)
+|||+-|+-+
T Consensus 212 ~~rVerAkfq 221 (382)
T KOG1548|consen 212 KLRVERAKFQ 221 (382)
T ss_pred EEEEehhhhh
Confidence 9999987744
No 79
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.17 E-value=4.2e-06 Score=83.19 Aligned_cols=74 Identities=11% Similarity=0.172 Sum_probs=62.0
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
++|..|...+...+|.+|||+||+|+-.+++.... ..|+||.|++.++|.+||+.|+-.+|.+ +.|.|+-+|.
T Consensus 408 lWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG---rmISVEkaKN 484 (940)
T KOG4661|consen 408 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG---RMISVEKAKN 484 (940)
T ss_pred eeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc---eeeeeeeccc
Confidence 44899987777899999999999999776664322 3699999999999999999999999976 4788888775
Q ss_pred C
Q 026793 97 T 97 (233)
Q Consensus 97 ~ 97 (233)
.
T Consensus 485 E 485 (940)
T KOG4661|consen 485 E 485 (940)
T ss_pred C
Confidence 4
No 80
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.14 E-value=3.5e-06 Score=81.13 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=58.8
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC--C--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN--G--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~--~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
.+.|||.||+.++|.+.|.++|..||.|++..|..++ + .+++||+|.+.++++.|+++- .++-+ .++|.|+-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig-~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIG-GRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccC-CeeEEEEe
Confidence 4459999999999999999999999999999886544 2 279999999999999999984 33333 36777665
No 81
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.09 E-value=1.6e-05 Score=61.77 Aligned_cols=70 Identities=23% Similarity=0.389 Sum_probs=47.3
Q ss_pred EEEEEeCCCCCCCHHH----HHHhhccCC-ceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 19 LLASIENMQYAVTVDV----LNTVFSAFG-TVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 19 LlV~V~NL~y~VTed~----L~~iFS~yG-~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
-+|+|.||+...+... |.+|+..+| +|..| . ++.|.|.|.+.+.|++|.+-|+|.++|+. +|.|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~----~~tAilrF~~~~~A~RA~KRmegEdVfG~---kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S----GGTAILRFPNQEFAERAQKRMEGEDVFGN---KISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS-----EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e----CCEEEEEeCCHHHHHHHHHhhcccccccc---eEEEEE
Confidence 3578999998777554 789999995 55444 2 24699999999999999999999999984 899999
Q ss_pred ecCC
Q 026793 94 SRHT 97 (233)
Q Consensus 94 Sk~~ 97 (233)
.+..
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 7543
No 82
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.06 E-value=6.9e-06 Score=75.62 Aligned_cols=79 Identities=14% Similarity=0.281 Sum_probs=66.5
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
.+||+=|...-+||+++.+|..||.|+++++.+..+ ++.|||.|.+..||+.||+.|+|..-..|-...|.|-|+..
T Consensus 21 klfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADT 100 (371)
T KOG0146|consen 21 KLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADT 100 (371)
T ss_pred hhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccc
Confidence 345888888899999999999999999999986433 47899999999999999999999887666456788888865
Q ss_pred Cc
Q 026793 97 TD 98 (233)
Q Consensus 97 ~~ 98 (233)
++
T Consensus 101 dk 102 (371)
T KOG0146|consen 101 DK 102 (371)
T ss_pred hH
Confidence 54
No 83
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.98 E-value=1.2e-05 Score=81.38 Aligned_cols=78 Identities=17% Similarity=0.331 Sum_probs=67.4
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEE-ccC------CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIF-EKN------GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If-~k~------~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
-+||.||+..|+++.|-..|++||.|..|+|+ .+. ..-.+||-|-+..+|+.|++.|+|..|+. ..|++-
T Consensus 176 Nlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~---~e~K~g 252 (877)
T KOG0151|consen 176 NLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME---YEMKLG 252 (877)
T ss_pred ceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee---eeeeec
Confidence 35799999999999999999999999999775 222 13479999999999999999999999986 599999
Q ss_pred eecCCcce
Q 026793 93 YSRHTDLN 100 (233)
Q Consensus 93 fSk~~~L~ 100 (233)
|+|...|.
T Consensus 253 Wgk~V~ip 260 (877)
T KOG0151|consen 253 WGKAVPIP 260 (877)
T ss_pred cccccccC
Confidence 99887664
No 84
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.97 E-value=1.6e-05 Score=71.00 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=66.5
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
-..-.|+|+|+.+.+|.+.+...|+-||.|.+|.|..++. .++|||+|.+.+..++|+. |||..|-+ ..+.+
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~---~~i~v 174 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG---PAIEV 174 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc---cccee
Confidence 3455678999999999999999999999999988864332 4699999999999999999 99999976 47888
Q ss_pred EeecCCcc
Q 026793 92 SYSRHTDL 99 (233)
Q Consensus 92 ~fSk~~~L 99 (233)
++-+....
T Consensus 175 t~~r~~~p 182 (231)
T KOG4209|consen 175 TLKRTNVP 182 (231)
T ss_pred eeeeeecC
Confidence 87665533
No 85
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.91 E-value=2.2e-05 Score=74.84 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=57.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeec
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIY 82 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy 82 (233)
--+|||..+..++++++|..+|..||+|+++.+-+.. ..+|+||||.+..+-..|+..||=+++-
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLG 278 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG 278 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcc
Confidence 4579999999999999999999999999999886533 2479999999999999999999987773
No 86
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.90 E-value=3.1e-05 Score=75.20 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=62.7
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
+--.|+|.||+++.|-++|++-|..||.|+-..|.+.-. ....|.|.+.++|++|+..|||..+.+ +.|+|+|
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gk-skGVVrF~s~edAEra~a~Mngs~l~G---r~I~V~y 607 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGK-SKGVVRFFSPEDAERACALMNGSRLDG---RNIKVTY 607 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhccCC-ccceEEecCHHHHHHHHHHhccCcccC---ceeeeee
Confidence 444588999999999999999999999999988854322 356899999999999999999999865 5888887
No 87
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.87 E-value=4e-05 Score=74.42 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=55.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhhc-cCCceEEEEEEc-cCC--CeeEEEEeCCHHHHHHHHHHhcCCeecC
Q 026793 19 LLASIENMQYAVTVDVLNTVFS-AFGTVQKVAIFE-KNG--GTQALIQYPDITTAAVAKESLEGHCIYD 83 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS-~yG~V~kI~If~-k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~ 83 (233)
..|||+||+|++.-++|..||. +-|+|+-|.++. ..+ +++|.|||++.|.+++|++.||-+++.+
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~G 113 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNG 113 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccC
Confidence 3499999999999999999986 569999997654 333 4789999999999999999999998865
No 88
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.86 E-value=6.6e-05 Score=66.42 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=56.2
Q ss_pred EEEeCCCCCCCHHHHHHhhccC-CceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 21 ASIENMQYAVTVDVLNTVFSAF-GTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~y-G~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
++|..++.-+-+..|...|..| |.|.++++-+.+ ..+||||||++.+-|..|-+.||+.-+++. -|.+.|=.
T Consensus 52 ~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~---lL~c~vmp 128 (214)
T KOG4208|consen 52 VYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH---LLECHVMP 128 (214)
T ss_pred eeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh---eeeeEEeC
Confidence 4578888888899999999999 555555664422 247999999999999999999999888764 56655544
Q ss_pred C
Q 026793 96 H 96 (233)
Q Consensus 96 ~ 96 (233)
.
T Consensus 129 p 129 (214)
T KOG4208|consen 129 P 129 (214)
T ss_pred c
Confidence 3
No 89
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.68 E-value=0.00014 Score=57.52 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=37.7
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGH 79 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~ 79 (233)
+|.|.++..+++.++|+++|+.||.|.=|.+-+- ...|+|.|.+.+.|+.|++.+.-.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G--~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG--DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT---SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC--CCEEEEEECCcchHHHHHHHHHhc
Confidence 4568889999999999999999998877665442 247999999999999999988654
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.47 E-value=0.00038 Score=68.13 Aligned_cols=80 Identities=11% Similarity=0.197 Sum_probs=61.6
Q ss_pred CCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccce
Q 026793 11 KKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCK 88 (233)
Q Consensus 11 ~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~ 88 (233)
.....+....|.+..|++++|+++|++.|+.+ +|+++++.++++ .+-|||||.+.|++++|++. |-..| + .+-
T Consensus 3 i~~e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~m-g--~RY 77 (510)
T KOG4211|consen 3 IENEGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESM-G--HRY 77 (510)
T ss_pred cccCCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHh-C--Cce
Confidence 34455667788899999999999999999999 789977776644 46899999999999999983 44333 2 245
Q ss_pred EEEEeec
Q 026793 89 LHLSYSR 95 (233)
Q Consensus 89 LrI~fSk 95 (233)
|.|.-+.
T Consensus 78 IEVf~~~ 84 (510)
T KOG4211|consen 78 IEVFTAG 84 (510)
T ss_pred EEEEccC
Confidence 6665543
No 91
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.39 E-value=0.00018 Score=67.81 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=68.9
Q ss_pred CCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEE--------EEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCe
Q 026793 13 ELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQK--------VAIFEKNG----GTQALIQYPDITTAAVAKESLEGHC 80 (233)
Q Consensus 13 ~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~k--------I~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~ 80 (233)
+..+-.++|||.+|...+|+++|...|..+|.|.+ |.|.+++. ..-|.|.|+|..+|+.|+..+++++
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 34667889999999999999999999999999963 44554322 3689999999999999999999999
Q ss_pred ecCCccceEEEEeecCCc
Q 026793 81 IYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 81 Iy~gg~~~LrI~fSk~~~ 98 (233)
+.+ .+|+|.++..+.
T Consensus 141 f~g---n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCG---NTIKVSLAERRT 155 (351)
T ss_pred ccC---CCchhhhhhhcc
Confidence 976 588888876553
No 92
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.33 E-value=0.00023 Score=68.82 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=52.3
Q ss_pred CCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC------C-----------CeeEEEEeCCHHHHHHHHHHhc
Q 026793 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN------G-----------GTQALIQYPDITTAAVAKESLE 77 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~------~-----------~~~AFVEF~d~esA~~A~~~LN 77 (233)
++++++ +.||+.+-..+.|..||+.+|.|..|+|.+-+ . .-+|||||+..+.|.+|.+.||
T Consensus 230 ~srtiv--aenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIV--AENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEE--EecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 555554 99999888889999999999999999886431 0 1369999999999999999986
Q ss_pred CCe
Q 026793 78 GHC 80 (233)
Q Consensus 78 G~~ 80 (233)
-..
T Consensus 308 ~e~ 310 (484)
T KOG1855|consen 308 PEQ 310 (484)
T ss_pred hhh
Confidence 443
No 93
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.32 E-value=0.00041 Score=64.71 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=57.6
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEE-ccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIF-EKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If-~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
.++..|+|..|.+.+++++|.+.|.+||.|..+.+. ++.. .+++||.|++.++..++... .-+.|.+. +|.++
T Consensus 95 ~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk-~vevk 171 (311)
T KOG4205|consen 95 LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGK-KVEVK 171 (311)
T ss_pred cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCc-eeeEe
Confidence 357789999999999999999999999999988664 3322 47999999999888888773 56677654 34443
No 94
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.32 E-value=0.00088 Score=63.40 Aligned_cols=72 Identities=19% Similarity=0.333 Sum_probs=56.7
Q ss_pred EEEEEeCCCC----CCC-------HHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccc
Q 026793 19 LLASIENMQY----AVT-------VDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYC 87 (233)
Q Consensus 19 LlV~V~NL~y----~VT-------ed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~ 87 (233)
-+|+|.|+.. .-+ .++|.+-+++||.|.+|+++.+...+.+.|.|.+.++|..|++.|+|+-+ ++ +
T Consensus 266 ~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f-dg--R 342 (382)
T KOG1548|consen 266 RTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF-DG--R 342 (382)
T ss_pred cEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee-cc--e
Confidence 3455888853 223 34566779999999999999877767999999999999999999999986 44 5
Q ss_pred eEEEEe
Q 026793 88 KLHLSY 93 (233)
Q Consensus 88 ~LrI~f 93 (233)
.|.-+.
T Consensus 343 ql~A~i 348 (382)
T KOG1548|consen 343 QLTASI 348 (382)
T ss_pred EEEEEE
Confidence 666554
No 95
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.28 E-value=0.0002 Score=63.68 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=56.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
.++|.|+.-.+..++|...|+++|.+...++ .. .++||+|+..++|.+|++.|+|.+|.+ |.|.+.+
T Consensus 101 r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-~~---~~~~v~Fs~~~da~ra~~~l~~~~~~~---~~l~~~~ 167 (216)
T KOG0106|consen 101 RLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-RR---NFAFVEFSEQEDAKRALEKLDGKKLNG---RRISVEK 167 (216)
T ss_pred eeeeccchhhhhHHHHhhhhcccCCCchhhh-hc---cccceeehhhhhhhhcchhccchhhcC---ceeeecc
Confidence 3568999888889999999999999955444 22 369999999999999999999999975 7888843
No 96
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.25 E-value=0.0005 Score=64.11 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=57.4
Q ss_pred CCceEEEEEeCCCC--CCC---HHHHHHhhccCCceEEEEEEccCC-----CeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 15 ESNVLLASIENMQY--AVT---VDVLNTVFSAFGTVQKVAIFEKNG-----GTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 15 pS~VLlV~V~NL~y--~VT---ed~L~~iFS~yG~V~kI~If~k~~-----~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
+++||+ ..|+-- .++ ++++.+-|.+||+|.+|+||...+ ...-||||+..++|.+|.-.|||+.| +|
T Consensus 280 ptkvll--lrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF-GG 356 (378)
T KOG1996|consen 280 PTKVLL--LRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF-GG 356 (378)
T ss_pred chHHHH--hhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee-cc
Confidence 345554 455532 333 456788999999999999997543 35789999999999999999999876 54
Q ss_pred ccceEEEEeecCC
Q 026793 85 GYCKLHLSYSRHT 97 (233)
Q Consensus 85 g~~~LrI~fSk~~ 97 (233)
+.++-.|-...
T Consensus 357 --r~v~A~Fyn~e 367 (378)
T KOG1996|consen 357 --RVVSACFYNLE 367 (378)
T ss_pred --eeeeheeccHH
Confidence 56666664433
No 97
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.21 E-value=0.001 Score=67.75 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=53.1
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
|.+.|++++||.++|-+.|+-|--+-.-++.+.++ .+-|.|-|++.++|+.|...|+++.|.+.
T Consensus 870 ~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr 937 (944)
T KOG4307|consen 870 LSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNR 937 (944)
T ss_pred EEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccce
Confidence 45999999999999999999995554434444332 36899999999999999999999999874
No 98
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=97.19 E-value=0.00099 Score=57.81 Aligned_cols=75 Identities=15% Similarity=0.285 Sum_probs=48.8
Q ss_pred CCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhc--CCeecCCccceEEEEeecCCcceeecCCCC
Q 026793 30 VTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE--GHCIYDGGYCKLHLSYSRHTDLNVKAYSDK 107 (233)
Q Consensus 30 VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LN--G~~Iy~gg~~~LrI~fSk~~~L~Vr~nndk 107 (233)
-..+.|..+|+.|+.+..+..+++-+ ...|.|.+.++|+.|+..|+ +..|.+ ..|+|.|+....+. ++.
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g---~~l~~yf~~~~~~~----~~~ 77 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNG---KRLRVYFGQPTPIE----DDS 77 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETT---EE-EEE----SS---------
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCC---CceEEEEccccccc----ccc
Confidence 34688999999999999999888766 59999999999999999999 888866 47999999665552 334
Q ss_pred cccccc
Q 026793 108 SRDYTV 113 (233)
Q Consensus 108 srDYT~ 113 (233)
..+|..
T Consensus 78 ~~~~L~ 83 (184)
T PF04847_consen 78 EKQYLE 83 (184)
T ss_dssp -S--S-
T ss_pred cccccC
Confidence 445554
No 99
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.19 E-value=0.00063 Score=67.22 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=61.7
Q ss_pred CCCceEEEEEeCCCCCCC----------HHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecC
Q 026793 14 LESNVLLASIENMQYAVT----------VDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYD 83 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~VT----------ed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~ 83 (233)
.++.+|+ +.|+..+-| .|++.+-|++||+|..|.+ +++.-++.||.|.+.+.|..|..+|||..|-+
T Consensus 441 i~t~C~l--L~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~v-d~ns~g~VYvrc~s~~~A~~a~~alhgrWF~g 517 (549)
T KOG0147|consen 441 IPTQCLL--LSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFV-DKNSAGCVYVRCPSAEAAGTAVKALHGRWFAG 517 (549)
T ss_pred CccHHHH--HhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEE-ccCCCceEEEecCcHHHHHHHHHHHhhhhhcc
Confidence 4666776 788865544 3456667799999988766 44444799999999999999999999999854
Q ss_pred CccceEEEEeecCCcce
Q 026793 84 GGYCKLHLSYSRHTDLN 100 (233)
Q Consensus 84 gg~~~LrI~fSk~~~L~ 100 (233)
+.|.+.|-......
T Consensus 518 ---r~Ita~~~~~~~Y~ 531 (549)
T KOG0147|consen 518 ---RMITAKYLPLERYH 531 (549)
T ss_pred ---ceeEEEEeehhhhh
Confidence 58888886554433
No 100
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.18 E-value=0.00015 Score=66.16 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=57.2
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecC
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYD 83 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~ 83 (233)
+=.+||-+.|..+|+.|+|...|.+|-..++.++.+++. .++.||.|.|.+++..|+..+||+-+..
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS 259 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc
Confidence 345678888888999999999999999999887665332 4799999999999999999999998754
No 101
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.17 E-value=0.00035 Score=65.14 Aligned_cols=64 Identities=16% Similarity=0.302 Sum_probs=52.8
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHH----hcCCeecC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKES----LEGHCIYD 83 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~----LNG~~Iy~ 83 (233)
.|+|.+|.+.+|++.|..-|+.||+|.+++|.++.. .++.||+|++.++-..++.. |+|+.|..
T Consensus 8 KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 8 KLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEP 79 (311)
T ss_pred ceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccc
Confidence 467999999999999999999999999998876443 47999999999888887765 55555543
No 102
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.16 E-value=0.00085 Score=46.93 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=39.1
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHH
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAK 73 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~ 73 (233)
+|.|........+.+|. .|..||+|.++.+-.+.. ..+|+|.+..+|++|+
T Consensus 3 wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~~~--~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLAEEVLE-HFASFGEIVDIYVPESTN--WMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCCCc--EEEEEECCHHHHHhhC
Confidence 46688876555555555 788899999987764333 6999999999999985
No 103
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=97.15 E-value=0.00022 Score=73.52 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=59.9
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 25 NMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 25 NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
|..-..|...|+.+|+.||.|..+..++..+ .|+|+|++++.|..|.++|+|+++.-- ..+.+|.|||.-.
T Consensus 305 nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 305 NNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVT-GAPSRVSFAKTLP 375 (1007)
T ss_pred cccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccccc-CCceeEEeccccc
Confidence 3334577888999999999999998877655 599999999999999999999998764 3689999998643
No 104
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.08 E-value=0.0013 Score=62.53 Aligned_cols=73 Identities=23% Similarity=0.423 Sum_probs=55.9
Q ss_pred EEEEeCCCCCCCHHH----H--HHhhccCCceEEEEEEccCC-----CeeE--EEEeCCHHHHHHHHHHhcCCeecCCcc
Q 026793 20 LASIENMQYAVTVDV----L--NTVFSAFGTVQKVAIFEKNG-----GTQA--LIQYPDITTAAVAKESLEGHCIYDGGY 86 (233)
Q Consensus 20 lV~V~NL~y~VTed~----L--~~iFS~yG~V~kI~If~k~~-----~~~A--FVEF~d~esA~~A~~~LNG~~Iy~gg~ 86 (233)
+|||-.|+.+|-.+. | ++.|+.||+|.||+|-+|.. ..++ ||.|.+.|+|.+||...+|.-+ +|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~-DG-- 192 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL-DG-- 192 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc-cC--
Confidence 467777776665443 3 68999999999999976652 1234 9999999999999999999766 44
Q ss_pred ceEEEEeec
Q 026793 87 CKLHLSYSR 95 (233)
Q Consensus 87 ~~LrI~fSk 95 (233)
+-|+-.|..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 577777754
No 105
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.07 E-value=0.0015 Score=64.39 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=47.2
Q ss_pred HHHHhhccCCceEEEEEEcc-C------CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 34 VLNTVFSAFGTVQKVAIFEK-N------GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 34 ~L~~iFS~yG~V~kI~If~k-~------~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
++.+-|++||.|.+|.|-+. . +.+..||||.|.+++++|+++|+|..+.+ +++...|
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n---RtVvtsY 488 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN---RTVVASY 488 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC---cEEEEEe
Confidence 45678999999999988654 2 24689999999999999999999999865 4776666
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.89 E-value=0.0014 Score=64.67 Aligned_cols=91 Identities=15% Similarity=0.199 Sum_probs=72.6
Q ss_pred CCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCcc
Q 026793 11 KKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGY 86 (233)
Q Consensus 11 ~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~ 86 (233)
....+-....|+|+||.+.++++.+.++-..||.++...++..+ +.++||.||-|..-...|+..|||.++.+.
T Consensus 282 ~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~-- 359 (500)
T KOG0120|consen 282 STDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK-- 359 (500)
T ss_pred ccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc--
Confidence 34444456678899999999999999999999999887766533 357999999999999999999999999764
Q ss_pred ceEEEEeecCCcceeecC
Q 026793 87 CKLHLSYSRHTDLNVKAY 104 (233)
Q Consensus 87 ~~LrI~fSk~~~L~Vr~n 104 (233)
+|.|+.+-....++..+
T Consensus 360 -~lvvq~A~~g~~~~~~~ 376 (500)
T KOG0120|consen 360 -KLVVQRAIVGASNANVN 376 (500)
T ss_pred -eeEeehhhccchhcccc
Confidence 88888876655444333
No 107
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.88 E-value=0.051 Score=52.13 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=60.0
Q ss_pred CCceEEEEEeCCCCCCCHHHHHHhhccCC--ceEEEEEEccC--C--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccce
Q 026793 15 ESNVLLASIENMQYAVTVDVLNTVFSAFG--TVQKVAIFEKN--G--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCK 88 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~~iFS~yG--~V~kI~If~k~--~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~ 88 (233)
+.+-..+||+||.+-+|.++|.+.....| .|.+|+.|+.. + ++||+|-..+..+.++-++.|--+.|.+. ..
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ--~P 154 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ--SP 154 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC--CC
Confidence 55677899999998888777766555554 45667778643 2 47999999999999999999999999876 55
Q ss_pred EEEEeec
Q 026793 89 LHLSYSR 95 (233)
Q Consensus 89 LrI~fSk 95 (233)
..+.|-|
T Consensus 155 ~V~~~NK 161 (498)
T KOG4849|consen 155 TVLSYNK 161 (498)
T ss_pred eeeccch
Confidence 5566644
No 108
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.74 E-value=0.008 Score=47.55 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=47.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEE-------------EEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCcc
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVA-------------IFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGY 86 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~-------------If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~ 86 (233)
+|+|-.-+.. ..+.+-+.|++||+|++.. ++... .--.|+|++..+|.+|++. ||.-|.+.
T Consensus 8 wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~--NWi~I~Y~~~~~A~rAL~~-NG~i~~g~-- 81 (100)
T PF05172_consen 8 WVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG--NWIHITYDNPLSAQRALQK-NGTIFSGS-- 81 (100)
T ss_dssp EEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCT--TEEEEEESSHHHHHHHHTT-TTEEETTC--
T ss_pred EEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCC--CEEEEECCCHHHHHHHHHh-CCeEEcCc--
Confidence 3556665544 5566778899999998875 33322 2588999999999999995 99877553
Q ss_pred ceEEEEeec
Q 026793 87 CKLHLSYSR 95 (233)
Q Consensus 87 ~~LrI~fSk 95 (233)
+-+-|-+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 566677764
No 109
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.72 E-value=0.0011 Score=66.32 Aligned_cols=88 Identities=22% Similarity=0.285 Sum_probs=67.6
Q ss_pred CCCCceEEEEEeCCCCCCCHHHHHHhhcc-CCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 13 ELESNVLLASIENMQYAVTVDVLNTVFSA-FGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 13 ~~pS~VLlV~V~NL~y~VTed~L~~iFS~-yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
...|+||+ |.||.-+.|+-.|..+..+ .|.|+..-| ++ -..+|||.|.++++|..-+.+|||..--.++-..|.|
T Consensus 441 ~~~Snvlh--I~nLvRPFTlgQLkelL~rtgg~Vee~Wm-Dk-IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 441 KEPSNVLH--IDNLVRPFTLGQLKELLGRTGGNVEEFWM-DK-IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCccceEe--eecccccchHHHHHHHHhhccCchHHHHH-HH-hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 45788887 9999999999999999995 455555422 22 2348999999999999999999998765543456889
Q ss_pred EeecCCcceeecC
Q 026793 92 SYSRHTDLNVKAY 104 (233)
Q Consensus 92 ~fSk~~~L~Vr~n 104 (233)
+|...++|.-..+
T Consensus 517 df~~~deld~hr~ 529 (718)
T KOG2416|consen 517 DFVRADELDKHRN 529 (718)
T ss_pred eecchhHHHHHhc
Confidence 9988877764443
No 110
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.50 E-value=0.0014 Score=59.71 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=49.4
Q ss_pred HHHHHhhc-cCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 33 DVLNTVFS-AFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 33 d~L~~iFS-~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
++|+..|+ +||.|++++|-+... .+.++|+|...++|++|++.|||..|.+ ..|..+|+..++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G---~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNG---RPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccC---CcceeeecCcCc
Confidence 56777788 999999986643222 2579999999999999999999998754 478877766554
No 111
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.0049 Score=61.67 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=51.9
Q ss_pred EEEeCCCCCCC-------HHHHHHhhccCCceEEEEEE-ccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 21 ASIENMQYAVT-------VDVLNTVFSAFGTVQKVAIF-EKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 21 V~V~NL~y~VT-------ed~L~~iFS~yG~V~kI~If-~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
|.|.|++ .|. ...|+.+|+++|+|.+..+. +..+ .++.|+||.+..+|+.|++.|||+.|.-. .++.
T Consensus 61 Vvv~g~P-vV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn--Htf~ 137 (698)
T KOG2314|consen 61 VVVDGAP-VVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN--HTFF 137 (698)
T ss_pred EEECCCc-ccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc--ceEE
Confidence 4588875 333 23578999999999998774 3322 47999999999999999999999998543 4554
Q ss_pred E
Q 026793 91 L 91 (233)
Q Consensus 91 I 91 (233)
|
T Consensus 138 v 138 (698)
T KOG2314|consen 138 V 138 (698)
T ss_pred e
Confidence 4
No 112
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.48 E-value=0.0059 Score=60.01 Aligned_cols=78 Identities=13% Similarity=0.221 Sum_probs=55.7
Q ss_pred CCceEEEEEeCCCCCCCHHHHHHhhccCCceEE-EEEEc-cC--CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTVQK-VAIFE-KN--GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~k-I~If~-k~--~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
...|++ +..|++.||+++|.+.|+-.=-|-+ |.+.. .. .++-|||+|++.+.|++|++- |...| + .+-|.
T Consensus 102 ~d~vVR--LRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~i-G--hRYIE 175 (510)
T KOG4211|consen 102 NDGVVR--LRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENI-G--HRYIE 175 (510)
T ss_pred CCceEE--ecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhh-c--cceEE
Confidence 334554 8999999999999999999855555 22222 22 246899999999999999985 44444 3 25677
Q ss_pred EEeecCCc
Q 026793 91 LSYSRHTD 98 (233)
Q Consensus 91 I~fSk~~~ 98 (233)
|+-|...+
T Consensus 176 vF~Ss~~e 183 (510)
T KOG4211|consen 176 VFRSSRAE 183 (510)
T ss_pred eehhHHHH
Confidence 77665443
No 113
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.40 E-value=0.024 Score=44.65 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=56.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccC--CceEEEEE---Ec-cCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCc-cceEEEE
Q 026793 20 LASIENMQYAVTVDVLNTVFSAF--GTVQKVAI---FE-KNGGTQALIQYPDITTAAVAKESLEGHCIYDGG-YCKLHLS 92 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~y--G~V~kI~I---f~-k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg-~~~LrI~ 92 (233)
+|-|.|++...|.++|.+++... |...=+.+ |+ +.+.+||||.|.+.+.|.+=.+.++|+..-... .....|.
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~ 82 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEIS 82 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEe
Confidence 46699999999999998877664 22222222 12 223589999999999999999999999874321 1345788
Q ss_pred eecCC
Q 026793 93 YSRHT 97 (233)
Q Consensus 93 fSk~~ 97 (233)
||+.+
T Consensus 83 yAriQ 87 (97)
T PF04059_consen 83 YARIQ 87 (97)
T ss_pred hhHhh
Confidence 88765
No 114
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.35 E-value=0.0033 Score=57.80 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=61.0
Q ss_pred EEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 22 SIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 22 ~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
+|.|+...+|+|+|+..|..+|.|.+|.+..... .++|+|+|.+..++..|+.. +...|++ .+++|++.+.+
T Consensus 189 ~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~ 264 (285)
T KOG4210|consen 189 FVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGG---RPLRLEEDEPR 264 (285)
T ss_pred eecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccC---cccccccCCCC
Confidence 4999999999999999999999999998865443 26899999999999999998 7887754 57888886654
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.02 E-value=0.008 Score=62.65 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=64.3
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
-.++|..|...+....|...|+.||.|..|.+-+ +..+|+|+|++...|+.|+..|-|.+|-+. ...|+|+|+...
T Consensus 456 tr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P-~~r~rvdla~~~ 531 (975)
T KOG0112|consen 456 TRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGP-PRRLRVDLASPP 531 (975)
T ss_pred eeeccCCCCCCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCC-CcccccccccCC
Confidence 3456999999999999999999999999877633 346999999999999999999999999554 567899987643
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.92 E-value=0.038 Score=46.67 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=51.8
Q ss_pred CCCCCceEEEEEeC-C-CCC-CC----HHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 12 KELESNVLLASIEN-M-QYA-VT----VDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 12 ~~~pS~VLlV~V~N-L-~y~-VT----ed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
..++.-...|.|.+ . ... .- .+.|.+.|+.||+|.-|++... .-+|.|.+-++|-+|++ |+|.+|.+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g- 96 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNG- 96 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETT-
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECC-
Confidence 34566667778887 1 111 12 3468899999999987766653 47899999999999998 79999965
Q ss_pred ccceEEEEeecCCcc
Q 026793 85 GYCKLHLSYSRHTDL 99 (233)
Q Consensus 85 g~~~LrI~fSk~~~L 99 (233)
..|+|.--....+
T Consensus 97 --~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 97 --RTLKIRLKTPDWL 109 (146)
T ss_dssp --EEEEEEE------
T ss_pred --EEEEEEeCCccHH
Confidence 5788876555554
No 117
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.76 E-value=0.0035 Score=57.37 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=56.5
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----------CC------eeEEEEeCCHHHHHHHHHHhcCCe
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----------GG------TQALIQYPDITTAAVAKESLEGHC 80 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----------~~------~~AFVEF~d~esA~~A~~~LNG~~ 80 (233)
++=.||++||+.......|++||+.||.|-+|.+-... ++ .-+.|||.+..-|....+.|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45568899999999999999999999999999773211 11 247799999999999999999999
Q ss_pred ecCC
Q 026793 81 IYDG 84 (233)
Q Consensus 81 Iy~g 84 (233)
|-++
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 9654
No 118
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.54 E-value=0.019 Score=55.45 Aligned_cols=72 Identities=17% Similarity=0.377 Sum_probs=55.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC-------CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG-------GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~-------~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.|-|.||...+|.|.+++||...|+|..+.+|..-+ .-.|||-|.|..++..|-. |.++-+-+ |..|-|-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvd--raliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVD--RALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeee--eeEEEEe
Confidence 445999999999999999999999999999886322 2479999999998888765 55555544 4555555
Q ss_pred ee
Q 026793 93 YS 94 (233)
Q Consensus 93 fS 94 (233)
|.
T Consensus 86 ~~ 87 (479)
T KOG4676|consen 86 YG 87 (479)
T ss_pred cC
Confidence 63
No 119
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.48 E-value=0.05 Score=51.11 Aligned_cols=61 Identities=25% Similarity=0.259 Sum_probs=47.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecC
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYD 83 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~ 83 (233)
.+|+|-..+ +-....|-++|++||+|+|++.- .|+ -.-+|.|++..+|++|+.. ||+.|.+
T Consensus 198 ~WVTVfGFp-pg~~s~vL~~F~~cG~Vvkhv~~-~ng-NwMhirYssr~~A~KALsk-ng~ii~g 258 (350)
T KOG4285|consen 198 TWVTVFGFP-PGQVSIVLNLFSRCGEVVKHVTP-SNG-NWMHIRYSSRTHAQKALSK-NGTIIDG 258 (350)
T ss_pred ceEEEeccC-ccchhHHHHHHHhhCeeeeeecC-CCC-ceEEEEecchhHHHHhhhh-cCeeecc
Confidence 356666653 55677888999999999998776 433 3689999999999999995 8877643
No 120
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.93 E-value=0.47 Score=38.07 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=50.8
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCc-eEEEEEEccC--CCeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGT-VQKVAIFEKN--GGTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~-V~kI~If~k~--~~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
++.+..+++-++.++|..+.+.+-. |..++|.++. ++.-++|.|.|.++|..=.+.+||+.+..-
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 3446777888999999888888854 4455666543 245799999999999999999999997543
No 121
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.87 E-value=0.069 Score=45.59 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=47.0
Q ss_pred CCceEEEEEe----CCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCC
Q 026793 15 ESNVLLASIE----NMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGH 79 (233)
Q Consensus 15 pS~VLlV~V~----NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~ 79 (233)
+-.+-+|.|. |+...-+...+.+-.+.||.|++|+..-+.. |.|.|.|..+|-+|..+++..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqs---avVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQS---AVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCce---EEEEehhhHHHHHHHHhhcCC
Confidence 3344455554 5554444456777889999999999987755 999999999999999998863
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.83 E-value=0.73 Score=47.76 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=60.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceE--EEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQ--KVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~--kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
.|.+.||+......||++.||-. +|- -|.|.--.. +-|||-|++.|+|..||-- ++-.|.+ .++|+-.|...
T Consensus 4 IIRLqnLP~tAga~DIR~FFSGL-~IPdGgVHIIGGe~-GeaFI~FsTDeDARlaM~k-dr~~i~g---~~VrLlLSSks 77 (944)
T KOG4307|consen 4 IIRLQNLPMTAGASDIRTFFSGL-KIPDGGVHIIGGEE-GEAFIGFSTDEDARLAMTK-DRLMIHG---AEVRLLLSSKS 77 (944)
T ss_pred EEEecCCcccccchHHHHhhccc-ccCCCceEEecccc-cceEEEecccchhhhhhhh-cccceec---ceEEEEeccHH
Confidence 45689999999999999999976 221 133433222 4699999999999999985 6777765 37777766544
Q ss_pred c----ceeecCCCCccccccCCcc
Q 026793 98 D----LNVKAYSDKSRDYTVQDQT 117 (233)
Q Consensus 98 ~----L~Vr~nndksrDYT~p~~~ 117 (233)
+ +..++.....--|+.|-..
T Consensus 78 Emq~vIe~~rkaaa~a~~~~Pv~~ 101 (944)
T KOG4307|consen 78 EMQSVIEARRKAAANATYTSPVYK 101 (944)
T ss_pred HHHHHHHHHHHHHhcCCccCCccc
Confidence 3 2223322234566665443
No 123
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.78 E-value=0.03 Score=51.39 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=50.7
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C--CeeEEEEeCCHHHHHHHHHHhcCCee
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G--GTQALIQYPDITTAAVAKESLEGHCI 81 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~--~~~AFVEF~d~esA~~A~~~LNG~~I 81 (233)
.|+|.||..-++.|.|++.|+.||.|++.++..+. . +...+|+|....+|.+|+..++-..+
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 36799999999999999999999999987554322 2 46799999999999999998753333
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.35 E-value=0.0096 Score=62.09 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=60.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEc---cCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFE---KNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~---k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
+|+++||...+++..|..+|+.||.|.+|.|-. +.+..++||.|.+...+-.|+..|.+..|-.+ .|++.+-
T Consensus 374 TLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g-~~r~glG 448 (975)
T KOG0112|consen 374 TLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG-THRIGLG 448 (975)
T ss_pred hhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccC-ccccccc
Confidence 367999999999999999999999999998843 23346999999999999999999999998776 4555544
No 125
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.19 E-value=0.24 Score=38.62 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=39.6
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcC
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEG 78 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG 78 (233)
|+.|. .+..=...+|.++|+.||.|. |.-..+. .|||...+.+.|..|++.++-
T Consensus 11 VFhlt---FPkeWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT---FPKEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE-----TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe---CchHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 66544 455567899999999999973 3334443 599999999999999999974
No 126
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.73 E-value=0.27 Score=35.95 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=41.5
Q ss_pred EEEeCCCCCCCHHHHHHhhccC---CceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHh
Q 026793 21 ASIENMQYAVTVDVLNTVFSAF---GTVQKVAIFEKNGGTQALIQYPDITTAAVAKESL 76 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~y---G~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~L 76 (233)
|.|..+ ..++.+++...|..| ....+|.-.++.. |=|-|.|.+.|.+|+.+|
T Consensus 8 vhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 8 VHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred EEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 457777 478999999999999 2345776666655 889999999999999876
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.51 E-value=0.056 Score=52.94 Aligned_cols=75 Identities=24% Similarity=0.210 Sum_probs=55.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
.++|.||.+.++.++|..+|..----..=..+-+ .+||||.+.|..-|.+|++.|+|+-=..| .++.++++-.++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k--~gyafvd~pdq~wa~kaie~~sgk~elqG--kr~e~~~sv~kk 77 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK--SGYAFVDCPDQQWANKAIETLSGKVELQG--KRQEVEHSVPKK 77 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee--cceeeccCCchhhhhhhHHhhchhhhhcC--ceeeccchhhHH
Confidence 3679999999999999999976510000011112 25999999999999999999999865554 678888875544
No 128
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.50 E-value=0.15 Score=43.68 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=53.0
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhcc-CCceEEEEEEc----cC-----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCc
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSA-FGTVQKVAIFE----KN-----GGTQALIQYPDITTAAVAKESLEGHCIYDGG 85 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~-yG~V~kI~If~----k~-----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg 85 (233)
+..+.|.|++|++.+|++++.+..+. ++.-..-..|. +. .-..|+|.|.+.++...=++.++|+.+.+..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44557889999999999999998887 77662211211 11 1247999999999999999999999887752
Q ss_pred --cceEEEEeecCCcce
Q 026793 86 --YCKLHLSYSRHTDLN 100 (233)
Q Consensus 86 --~~~LrI~fSk~~~L~ 100 (233)
...-.|+||-.+++-
T Consensus 85 g~~~~~~VE~Apyqk~p 101 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKVP 101 (176)
T ss_dssp S-EEEEEEEE-SS----
T ss_pred CCCcceeEEEcchhccc
Confidence 235668998776653
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.72 E-value=0.1 Score=54.42 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=63.8
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEc-cCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFE-KNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~-k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
.|+|+|+++..|.+.|..||+++|++.++++.. +.+ .+.|+|.|.+..+|..+....++..+.. +.+.|.-|..
T Consensus 738 ~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE---~~~~v~vsnp 814 (881)
T KOG0128|consen 738 SVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRE---NNGEVQVSNP 814 (881)
T ss_pred hhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhh---cCccccccCC
Confidence 467999999999999999999999999986543 333 4689999999999999988877766543 2344444333
Q ss_pred CcceeecCCCCccccccCC
Q 026793 97 TDLNVKAYSDKSRDYTVQD 115 (233)
Q Consensus 97 ~~L~Vr~nndksrDYT~p~ 115 (233)
..||-.+++.|.
T Consensus 815 -------~~~K~k~~~~p~ 826 (881)
T KOG0128|consen 815 -------ERDKKKGEDKPG 826 (881)
T ss_pred -------ccccccccCCcc
Confidence 234556666654
No 130
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.69 E-value=0.56 Score=45.70 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=56.3
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEE---EEE-ccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKV---AIF-EKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI---~If-~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
.+++ +..|+|..|.++|-+.|..|-.-++. .+. ...+ .+-|||||.+.|.|..|...-+.+... .+-|.
T Consensus 281 dcvR--LRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk---~RYiE 355 (508)
T KOG1365|consen 281 DCVR--LRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMK---SRYIE 355 (508)
T ss_pred CeeE--ecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcc---cceEE
Confidence 3554 89999999999999999988765442 222 2222 468999999999999998877665442 24666
Q ss_pred EEeecCCcce
Q 026793 91 LSYSRHTDLN 100 (233)
Q Consensus 91 I~fSk~~~L~ 100 (233)
|.=+..++|+
T Consensus 356 vfp~S~eeln 365 (508)
T KOG1365|consen 356 VFPCSVEELN 365 (508)
T ss_pred EeeccHHHHH
Confidence 6665555555
No 131
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=90.85 E-value=0.83 Score=45.52 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=47.8
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhc-cCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHH
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFS-AFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKES 75 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS-~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~ 75 (233)
.-.+|||+.|+-.+|.++|..||+ .||.|+=+-|-.+.. .+-+=|.|++..+=.+||++
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 346788999999999999999999 999999888755422 34577888888777778775
No 132
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.68 E-value=1.5 Score=32.26 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=41.2
Q ss_pred CCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecC
Q 026793 29 AVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYD 83 (233)
Q Consensus 29 ~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~ 83 (233)
.+|.++|...+.+|+- .+|.. ++.+ =||.|.|.++|+++.+..||..+++
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~-d~tG---fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD-DRTG---FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe-cCCE---EEEEECChHHHHHHHHhcCCCEEEE
Confidence 5899999999999954 55543 3333 6799999999999999999999876
No 133
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.45 E-value=1.5 Score=44.42 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCceEEEEEeCCCCCCCHHHHHHhhcc--CCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHh------
Q 026793 5 IGPDGKKKELESNVLLASIENMQYAVTVDVLNTVFSA--FGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESL------ 76 (233)
Q Consensus 5 ~g~~g~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~--yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~L------ 76 (233)
|..+|.|..+--|--.|++.-|.+..-+|++..||+- +-++..+. |-.|+. =||.|++.++|+.|.+.|
T Consensus 162 vDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~isce-fa~N~n--WyITfesd~DAQqAykylreevk~ 238 (684)
T KOG2591|consen 162 VDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCE-FAHNDN--WYITFESDTDAQQAYKYLREEVKT 238 (684)
T ss_pred eccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeee-eeecCc--eEEEeecchhHHHHHHHHHHHHHh
Confidence 4567777777767667778999999999999999976 55554443 444443 589999999999998766
Q ss_pred -cCCeecCC
Q 026793 77 -EGHCIYDG 84 (233)
Q Consensus 77 -NG~~Iy~g 84 (233)
.|+.|..+
T Consensus 239 fqgKpImAR 247 (684)
T KOG2591|consen 239 FQGKPIMAR 247 (684)
T ss_pred hcCcchhhh
Confidence 47777543
No 134
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.07 E-value=2.1 Score=43.43 Aligned_cols=78 Identities=27% Similarity=0.403 Sum_probs=60.9
Q ss_pred CCceEEEEEeCCCC-CCCHHHHHHhhccC----CceEEEEEEccC------------C----------------------
Q 026793 15 ESNVLLASIENMQY-AVTVDVLNTVFSAF----GTVQKVAIFEKN------------G---------------------- 55 (233)
Q Consensus 15 pS~VLlV~V~NL~y-~VTed~L~~iFS~y----G~V~kI~If~k~------------~---------------------- 55 (233)
+++-| -|.||.+ .|...+|+-+|+.| |.|++|.|+... +
T Consensus 173 ~T~RL--AVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 173 ETKRL--AVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred cccee--eEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 44444 4999997 58999999888877 699999885210 0
Q ss_pred -----------------CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 56 -----------------GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 56 -----------------~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
-.||.|+|++++.|..-.+.-+|..+-.. |..|.+-|--
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS-~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS-ANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc-cceeeeeecC
Confidence 14799999999999999999999998776 6677777743
No 135
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.00 E-value=0.049 Score=56.70 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=50.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEE--EccCC--CeeEEEEeCCHHHHHHHHHHhcCCe
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAI--FEKNG--GTQALIQYPDITTAAVAKESLEGHC 80 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~I--f~k~~--~~~AFVEF~d~esA~~A~~~LNG~~ 80 (233)
.+||+||.+.+.+.+|+..|+.||.++.|.| +..++ .++|+++|.+.++|..|+.-.++..
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~ 733 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF 733 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh
Confidence 4789999999999999999999999887744 32222 4799999999999999998766543
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.95 E-value=0.21 Score=47.19 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=50.1
Q ss_pred EEEeCCCCC-CCHHHHH--HhhccCCceEEEEEEccCC-------CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 21 ASIENMQYA-VTVDVLN--TVFSAFGTVQKVAIFEKNG-------GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 21 V~V~NL~y~-VTed~L~--~iFS~yG~V~kI~If~k~~-------~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
++|-.|... ..++.|. .-|..||.|.+|+++.+.. ..-++|.|+..++|..|++..+|... ++ +.|+
T Consensus 80 vyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~-dg--~~lk 156 (327)
T KOG2068|consen 80 VYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVD-DG--RALK 156 (327)
T ss_pred hhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHh-hh--hhhH
Confidence 334444433 3355554 6899999999999987551 13599999999999999999998754 43 3455
Q ss_pred EEeec
Q 026793 91 LSYSR 95 (233)
Q Consensus 91 I~fSk 95 (233)
..|..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 55543
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=85.89 E-value=2.5 Score=41.36 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=44.2
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhcc----CCceEEEEEEccC-C--CeeEEEEeCCHHHHHHHHH
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSA----FGTVQKVAIFEKN-G--GTQALIQYPDITTAAVAKE 74 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~----yG~V~kI~If~k~-~--~~~AFVEF~d~esA~~A~~ 74 (233)
-..|....|+|++|+.++.+.|.. -|.+++|...++. + .+-|||.|...++|+.|+.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH
Confidence 445678999999999999999962 2356676554442 2 3689999999999999986
No 138
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.89 E-value=5 Score=39.77 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=50.8
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccC-CceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecC
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAF-GTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYD 83 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~y-G~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~ 83 (233)
+.+|. |.-++--+|..+|-..+..| -.|+.|+|.++.. +.-++|.|.|.++|..=.+.+||+.|..
T Consensus 74 ~~mLc--ilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLC--ILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEE--EEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 44444 66677678888877766655 5677888887542 4679999999999999999999998754
No 139
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=83.94 E-value=4.5 Score=29.56 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=34.6
Q ss_pred CCCCHHHHHHhhccCCceE-----EEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 28 YAVTVDVLNTVFSAFGTVQ-----KVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 28 y~VTed~L~~iFS~yG~V~-----kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
..++..+|-.++..-+.|. +|.|+++ ++||+-... .|..+++.|++..+.+ .+++|+-
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~g---k~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKG---KKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS-------EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCC---eeEEEEE
Confidence 4678888888887776664 5666554 789998765 7999999999999865 4777764
No 140
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=83.62 E-value=4.2 Score=40.72 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=57.4
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----------CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceE
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----------GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKL 89 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----------~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~L 89 (233)
.|||+.|++.+||+.|...|..||.+.- .=-.|. ..+|+|+-|+++.+-+.=+++ |+.+.+..-|
T Consensus 261 KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a----C~~~~~~~yf 335 (520)
T KOG0129|consen 261 KVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA----CSEGEGNYYF 335 (520)
T ss_pred ceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH----HhhcccceEE
Confidence 4789999999999999999999999742 111111 114999999998766554333 2222211233
Q ss_pred EEEeecCC--cceee----cCCCCcccccc---CCcccccc
Q 026793 90 HLSYSRHT--DLNVK----AYSDKSRDYTV---QDQTLLAT 121 (233)
Q Consensus 90 rI~fSk~~--~L~Vr----~nndksrDYT~---p~~~~~~~ 121 (233)
+|.-.+.+ .++|+ .+.+-.+|.+. |.-.+|.+
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVG 376 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVG 376 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEec
Confidence 34433333 34443 34555666554 33455544
No 141
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=83.04 E-value=6.5 Score=35.22 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=57.6
Q ss_pred CCCCCCCc--eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecC
Q 026793 10 KKKELESN--VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYD 83 (233)
Q Consensus 10 ~~~~~pS~--VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~ 83 (233)
.+..++++ -.+|.|+.|+..-+-++|...+-+-|+|.=..++++. .+.|+|...|+-+-|+..|+.+.+..
T Consensus 105 g~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 105 GRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred cccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---ceeeeeeehhhHHHHHHhhccccccC
Confidence 33444554 4567799999999999999999999999877776653 58899999999999999999876643
No 142
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=73.47 E-value=23 Score=37.80 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=7.8
Q ss_pred CCCHHHHHHhhccCCc
Q 026793 29 AVTVDVLNTVFSAFGT 44 (233)
Q Consensus 29 ~VTed~L~~iFS~yG~ 44 (233)
...|+||+++-.++-+
T Consensus 361 E~~e~Dl~el~~rled 376 (1102)
T KOG1924|consen 361 EHKEDDLEELSGRLED 376 (1102)
T ss_pred hhhhhhHHHHHhHHHh
Confidence 3445555555544433
No 143
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=70.62 E-value=3.1 Score=41.39 Aligned_cols=61 Identities=20% Similarity=0.337 Sum_probs=46.6
Q ss_pred CHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 31 TVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 31 Ted~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
|..+|...|.+||+|+.|.+-.. ...|.|.|.+..+|-+|... .+.-|.+ +-|+|.|-+..
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~s-~~avlnn---r~iKl~whnps 446 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYAS-HGAVLNN---RFIKLFWHNPS 446 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhcc-ccceecC---ceeEEEEecCC
Confidence 57889999999999999977443 23699999999999777653 5666654 47788876653
No 144
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=67.11 E-value=0.41 Score=47.11 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=58.1
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEE-ccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIF-EKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If-~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
+-|.|++..+.-++|+.|...||+|+.+... .+....+.-|+|+..+.++.|+..|||..+.+. .+++.|-.+
T Consensus 83 ~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~---~~k~~YiPd 156 (584)
T KOG2193|consen 83 IQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQ---HLKVGYIPD 156 (584)
T ss_pred hhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhh---hhhcccCch
Confidence 6689999999999999999999999987442 222223444889999999999999999998763 777777544
No 145
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=64.33 E-value=9.6 Score=35.92 Aligned_cols=54 Identities=19% Similarity=0.378 Sum_probs=42.0
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-----------CCeeEEEEeCCHHHHHH
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-----------GGTQALIQYPDITTAAV 71 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-----------~~~~AFVEF~d~esA~~ 71 (233)
++-|+ .+|+...++...+-+.|.+||.|+.|.++.++ ...-.++.|-+.+.+-.
T Consensus 15 TRSLL--feNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 15 TRSLL--FENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eHHHH--HhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 34444 79999999999999999999999999998765 11357788888766543
No 146
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.44 E-value=1.4 Score=41.50 Aligned_cols=52 Identities=31% Similarity=0.459 Sum_probs=37.6
Q ss_pred CCHHHHHHhhccCCceEEEEEE--c--------cCCC-------------eeEEEEeCCHHHHHHHHHHhcCCee
Q 026793 30 VTVDVLNTVFSAFGTVQKVAIF--E--------KNGG-------------TQALIQYPDITTAAVAKESLEGHCI 81 (233)
Q Consensus 30 VTed~L~~iFS~yG~V~kI~If--~--------k~~~-------------~~AFVEF~d~esA~~A~~~LNG~~I 81 (233)
-+++.|...|..||.|..|.|. + ++.+ +-|||+|-...-=..|+++|.|..+
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 4688999999999999888652 1 1111 1366777777777788888888764
No 147
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.54 E-value=93 Score=31.19 Aligned_cols=12 Identities=42% Similarity=0.902 Sum_probs=7.3
Q ss_pred HHHhhccCCceE
Q 026793 35 LNTVFSAFGTVQ 46 (233)
Q Consensus 35 L~~iFS~yG~V~ 46 (233)
|=.||.-||.|.
T Consensus 247 lG~I~EiFGpV~ 258 (483)
T KOG2236|consen 247 LGQIFEIFGPVK 258 (483)
T ss_pred chhhhhhhcccC
Confidence 445666666664
No 148
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=59.69 E-value=34 Score=34.12 Aligned_cols=77 Identities=26% Similarity=0.356 Sum_probs=55.9
Q ss_pred ceEEEEEeCCCC-CCCHHHHHHhhccC----CceEEEEEEcc-----------------------------------C--
Q 026793 17 NVLLASIENMQY-AVTVDVLNTVFSAF----GTVQKVAIFEK-----------------------------------N-- 54 (233)
Q Consensus 17 ~VLlV~V~NL~y-~VTed~L~~iFS~y----G~V~kI~If~k-----------------------------------~-- 54 (233)
..-.|-|-||.+ .|...+|+-+||.| |.|.+|.|+.. +
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~~ 224 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNVF 224 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccch
Confidence 334445899997 58899999999887 88888887420 0
Q ss_pred -----C---------------------------CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 55 -----G---------------------------GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 55 -----~---------------------------~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
+ -.||.|+++|++.+..-..+-+|.+.-.. .+.+.+.|-
T Consensus 225 sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s-an~~DLRfv 295 (622)
T COG5638 225 SDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS-ANVLDLRFV 295 (622)
T ss_pred hhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc-cceeeeeec
Confidence 0 03788999999999999999999886554 345555553
No 149
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=57.22 E-value=21 Score=36.15 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=34.1
Q ss_pred CCeeEEEEeCCHHHHHHHHHHhcCCe---ecCCccceEEEEeecCCc
Q 026793 55 GGTQALIQYPDITTAAVAKESLEGHC---IYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 55 ~~~~AFVEF~d~esA~~A~~~LNG~~---Iy~gg~~~LrI~fSk~~~ 98 (233)
+-+||||.|-+.+.+..+.++.||+. |+. .....|.|++.+-
T Consensus 430 NvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS--~Kia~itYArIQG 474 (549)
T KOG4660|consen 430 NVGYAFINMTSPEAIIRFYKAFNGKKWEKFNS--EKIASITYARIQG 474 (549)
T ss_pred ccceeEEeecCHHHHHHHHHHHcCCchhhhcc--eeeeeeehhhhhc
Confidence 34799999999999999999999986 443 3556789988663
No 150
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=56.41 E-value=6.4 Score=40.50 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=52.3
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
..-+|||.|+.+.+..+.+..|-..+|.|....+.. |+|++|.+..-+..|+..|.-..|.+.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 345678999999999999999999999986654432 899999999999999999887666443
No 151
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=48.82 E-value=62 Score=34.73 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=7.4
Q ss_pred cCCCCCCCCCCCCCCCC
Q 026793 175 YVSASGPFPGQTYPQSP 191 (233)
Q Consensus 175 ~~~~~~~~~~~~~~~~~ 191 (233)
-.++|+..||-.+++|+
T Consensus 556 ~PPPPpplPg~aG~PPp 572 (1102)
T KOG1924|consen 556 PPPPPPPLPGIAGGPPP 572 (1102)
T ss_pred CCccCCCCCcccCCCCc
Confidence 34444445544444333
No 152
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=48.66 E-value=2.4e+02 Score=27.27 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=26.3
Q ss_pred ccCCCCCCCCCCCCCCCC--ccCCC-CCCCCCCCCCCc---CCCCCCCC----CCCCCCCCCCCCC-CC
Q 026793 174 AYVSASGPFPGQTYPQSP--VFAYA-TAPTPTGSSPLS---LTQPGVPP----VRPGGASPPGHPP-YY 231 (233)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~-~~ 231 (233)
+|.+..=.||.+..+.|- +.+|+ +++..++.++++ ++++++-+ ..-+|.+..+|+| ||
T Consensus 320 s~~Ss~l~~pp~aagtp~~~~~~~pmt~a~~P~~ppgh~~aq~p~~~~g~s~g~P~gg~~g~~q~phhY 388 (389)
T KOG2932|consen 320 SEQSSLLGYPPPAAGTPLNFQGSYPMTPAWNPGMPPGHTTAQVPRGRDGQSFGWPQGGRDGFGQEPHHY 388 (389)
T ss_pred cccccccCCCCCCCCCCccCCCCCCCCCCCCCCCCCCcccccCCccccCCCCCCCCCCCCCCCCCCccC
Confidence 555555455555443332 11222 233333444444 44444433 2223666777777 44
No 153
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=46.74 E-value=78 Score=29.55 Aligned_cols=8 Identities=13% Similarity=-0.139 Sum_probs=4.2
Q ss_pred EEEEeCCC
Q 026793 20 LASIENMQ 27 (233)
Q Consensus 20 lV~V~NL~ 27 (233)
|.+..|-.
T Consensus 12 wcwycnre 19 (341)
T KOG2893|consen 12 WCWYCNRE 19 (341)
T ss_pred eeeecccc
Confidence 44556654
No 154
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=45.87 E-value=41 Score=29.85 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=39.3
Q ss_pred HHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 35 LNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 35 L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
..++|-.|-+..-..+++-. ....|.|.+.+.|+.|+-.|++..+.++ ..++..|+...
T Consensus 32 ~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~~--~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 32 FENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNGK--NELKLYFAQPG 90 (193)
T ss_pred HHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCCC--ceEEEEEccCC
Confidence 34566644433222222221 2466999999999999999999999775 57777776543
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=45.48 E-value=4.8 Score=39.45 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=48.8
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCee
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCI 81 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~I 81 (233)
|+|.||...+-.+++-++|.++|.|....+-.+....+|.|+|....+..+|++. +|+.+
T Consensus 154 ~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~ 213 (479)
T KOG4676|consen 154 REVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRER 213 (479)
T ss_pred hhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhh
Confidence 6688888888889999999999999876665555556788999999999999985 56654
No 156
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=45.41 E-value=1.1e+02 Score=31.11 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=7.7
Q ss_pred eEEEEeCCHHHHHHHHH
Q 026793 58 QALIQYPDITTAAVAKE 74 (233)
Q Consensus 58 ~AFVEF~d~esA~~A~~ 74 (233)
+|+|+=++.|.-++|++
T Consensus 206 H~~Isadt~eki~~Ai~ 222 (554)
T KOG0119|consen 206 HCLISADTQEKIKKAIA 222 (554)
T ss_pred eEEEecchHHHHHHHHH
Confidence 45555444444444433
No 157
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=44.83 E-value=26 Score=28.20 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=29.1
Q ss_pred EEEeCCCCC---------CCHHHHHHhhccCCceEEEEEEccCC-CeeEEEEeCCHHHHHHHHHHhc
Q 026793 21 ASIENMQYA---------VTVDVLNTVFSAFGTVQKVAIFEKNG-GTQALIQYPDITTAAVAKESLE 77 (233)
Q Consensus 21 V~V~NL~y~---------VTed~L~~iFS~yG~V~kI~If~k~~-~~~AFVEF~d~esA~~A~~~LN 77 (233)
++|.|+... ++.+.|.+.|+.|..++-..+..+.+ .++++|+|..--+.-+--..|+
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp EEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred EEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHH
Confidence 457777432 45678999999998865334444543 4689999998755544333344
No 158
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=44.52 E-value=60 Score=27.74 Aligned_cols=55 Identities=27% Similarity=0.268 Sum_probs=38.8
Q ss_pred CCCCHHHHHHhhccC-CceEEEEEEccCC-CeeEEE---------EeCCHHHHHHHHHHhcCCeec
Q 026793 28 YAVTVDVLNTVFSAF-GTVQKVAIFEKNG-GTQALI---------QYPDITTAAVAKESLEGHCIY 82 (233)
Q Consensus 28 y~VTed~L~~iFS~y-G~V~kI~If~k~~-~~~AFV---------EF~d~esA~~A~~~LNG~~Iy 82 (233)
-+.|.|.|-++|..+ ++|+||+|..... ..+|=+ +++-.-+-..|+...-|..||
T Consensus 57 RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyyA~L~~~~~~~~~~iDaRPSDaI~LAlr~~~PI~ 122 (151)
T COG1259 57 RPLTHDLLVEIFEELGARVEKVVIDDLIDNTYYATLILEQDDGKIQIDARPSDAIALALRVGAPIY 122 (151)
T ss_pred CCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEEEEEEEEcCCceEEEecccchHHHHHHHhCCCEE
Confidence 468999999999999 5789998865433 344443 334444666777777787776
No 159
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=40.41 E-value=1.7e+02 Score=24.87 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=33.4
Q ss_pred HhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCee
Q 026793 37 TVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCI 81 (233)
Q Consensus 37 ~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~I 81 (233)
++|...=.+++.+| ..+ .|..-|.|-+.|-.|++-|-|+++
T Consensus 98 qlfn~~~dlq~fii-~dd---raifm~kdge~a~e~k~fll~qd~ 138 (164)
T KOG4357|consen 98 QLFNAHVDLQRFII-DDD---RAIFMFKDGEQAFEAKDFLLGQDF 138 (164)
T ss_pred HhhccccceEEEEe-cCC---eEEEEEeChhHHHHHHHHhhccch
Confidence 57888878777666 333 388889999999999999999987
No 160
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=38.95 E-value=33 Score=31.00 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=25.2
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 59 ALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 59 AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
|||.|++.++|+.|.+.+...+- ++++++.|-.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-----~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-----NSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-----CCceEeeCCC
Confidence 79999999999999998776543 3456666543
No 161
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=33.97 E-value=33 Score=30.52 Aligned_cols=33 Identities=24% Similarity=0.558 Sum_probs=25.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhc--cCCceEEEEEEc
Q 026793 20 LASIENMQYAVTVDVLNTVFS--AFGTVQKVAIFE 52 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS--~yG~V~kI~If~ 52 (233)
.+.|+||+|.+++..|.+++. .||.+.-+.++.
T Consensus 99 ~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 99 LLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp EEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEE
T ss_pred eEEEEEecccchHHHHHHHhhcccccccceEEEEe
Confidence 346999999999999999886 566665555543
No 162
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=33.88 E-value=58 Score=26.43 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=27.2
Q ss_pred CCCCHHHHHHhhccCC-ceEEEEEEccC-CCeeEEEEeCCH
Q 026793 28 YAVTVDVLNTVFSAFG-TVQKVAIFEKN-GGTQALIQYPDI 66 (233)
Q Consensus 28 y~VTed~L~~iFS~yG-~V~kI~If~k~-~~~~AFVEF~d~ 66 (233)
-+.|.|.|.+++..+| +|++|.|..-. +.++|-+.+.+.
T Consensus 51 RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~A~L~l~~~ 91 (135)
T PF02577_consen 51 RPLTHDLLSDLLEALGAEVERVVIDDLEDGVFYARLVLRQG 91 (135)
T ss_dssp S--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEEET
T ss_pred CCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEEEEEEEecC
Confidence 3677889999999998 67788887643 346777777543
No 163
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=31.60 E-value=29 Score=25.30 Aligned_cols=14 Identities=50% Similarity=0.895 Sum_probs=11.0
Q ss_pred CCCHHHHHHhhccC
Q 026793 29 AVTVDVLNTVFSAF 42 (233)
Q Consensus 29 ~VTed~L~~iFS~y 42 (233)
.+++|.|.+||++|
T Consensus 59 ~~~ediLd~IFs~F 72 (73)
T PF12631_consen 59 VVTEDILDNIFSNF 72 (73)
T ss_dssp S--HHHHHHHHCTS
T ss_pred CChHHHHHHHHHhh
Confidence 57899999999998
No 164
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=30.55 E-value=1.9e+02 Score=20.26 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=33.2
Q ss_pred HHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhc
Q 026793 32 VDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE 77 (233)
Q Consensus 32 ed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LN 77 (233)
.+.|.++..++| +.-..|.--..+...|+-+++.+.++++.+.|.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 356777889999 555566655445678888889999999888874
No 165
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=28.83 E-value=61 Score=28.51 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=26.0
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEEcc
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEK 53 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k 53 (233)
+.|+|++|.++...|.+++..+|...-+.++.+
T Consensus 97 ~vvsNlPy~i~~~il~~ll~~~~~~~~~~~~q~ 129 (253)
T TIGR00755 97 KVVSNLPYNISSPLIFKLLEKPKFRLAVLMVQK 129 (253)
T ss_pred eEEEcCChhhHHHHHHHHhccCCCceEEEEehH
Confidence 569999999999999999987766555555543
No 166
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=28.29 E-value=2e+02 Score=24.47 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=37.1
Q ss_pred CceEEEEEeCCC-CCCCHHH----HHHhhccCCceEEEEEEccCC-CeeEEEEeCCHHHHHHHHHHhcC
Q 026793 16 SNVLLASIENMQ-YAVTVDV----LNTVFSAFGTVQKVAIFEKNG-GTQALIQYPDITTAAVAKESLEG 78 (233)
Q Consensus 16 S~VLlV~V~NL~-y~VTed~----L~~iFS~yG~V~kI~If~k~~-~~~AFVEF~d~esA~~A~~~LNG 78 (233)
|++.++|++||. +.-+.|+ |..++.. ..+-..+++.. -.-++|+|+-..+|..-+..|--
T Consensus 2 snifla~~G~l~~~~~~ld~i~~~l~~L~~~---~~~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 2 SNIFLAYIGGLRMFQYKLDDIKNWLASLYKP---RISDLKVRKVEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred ceEEEEEECChhhhHHHHHHHHHHHHHHHhc---ccccceeeccccCceEEEEEechHHHHHHHHHHhh
Confidence 688999999997 1223333 3344433 22222233222 23699999999999888887743
No 167
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=27.99 E-value=21 Score=26.12 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=29.7
Q ss_pred HHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhc
Q 026793 33 DVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE 77 (233)
Q Consensus 33 d~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LN 77 (233)
+++...|+.+.+..+++- ..+|..|.|.++|-.+++++.
T Consensus 27 ~~v~~~~~~~~~f~k~vk------L~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVK------LKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhh------hhhccCCCCHHHHHHHHHHhh
Confidence 688888888777766532 258999999999988887763
No 168
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=27.08 E-value=85 Score=29.64 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=33.0
Q ss_pred ceEEEEEeCCCCC----CCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCC
Q 026793 17 NVLLASIENMQYA----VTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPD 65 (233)
Q Consensus 17 ~VLlV~V~NL~y~----VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d 65 (233)
+.-+|+|.|.+.+ ++.++|..+...... ..+++.+. ||+||.+
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~-~~~vVvDE-----AY~eF~~ 191 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE-GGLVVIDE-----AYIEFSP 191 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeC-----chhhcCC
Confidence 3445678887754 779999999998877 55666654 9999999
No 169
>PRK11901 hypothetical protein; Reviewed
Probab=26.43 E-value=1.8e+02 Score=27.90 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=33.0
Q ss_pred CCHHHHHHhhccCCceEEEEEEc--cCC-CeeEEE--EeCCHHHHHHHHHHhc
Q 026793 30 VTVDVLNTVFSAFGTVQKVAIFE--KNG-GTQALI--QYPDITTAAVAKESLE 77 (233)
Q Consensus 30 VTed~L~~iFS~yG~V~kI~If~--k~~-~~~AFV--EF~d~esA~~A~~~LN 77 (233)
-+++.|..+-.+++ +..+.+++ +++ .+|.+| +|.+.++|..|++.|-
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCC
Confidence 35777777766664 46666665 333 356555 7999999999999885
No 170
>PF07872 DUF1659: Protein of unknown function (DUF1659); InterPro: IPR012454 This family consists of hypothetical bacterial proteins of unknown function
Probab=26.17 E-value=91 Score=21.14 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=18.7
Q ss_pred CceEEEEEeCCCCCCCHHHHHHh
Q 026793 16 SNVLLASIENMQYAVTVDVLNTV 38 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~i 38 (233)
-..-...+.|+....|.++|+++
T Consensus 22 pi~k~ks~~nvk~~Atdedl~~V 44 (47)
T PF07872_consen 22 PIFKTKSFSNVKPDATDEDLYDV 44 (47)
T ss_pred EEEEeeehhhcCCCCCHHHHHHH
Confidence 34555678999999999999986
No 171
>PF14893 PNMA: PNMA
Probab=25.85 E-value=52 Score=31.27 Aligned_cols=51 Identities=14% Similarity=0.318 Sum_probs=36.2
Q ss_pred ceEEEEEeCCCCCCCHHHHH----HhhccCCceEEE-EEEccCC-CeeEEEEeCCHHHH
Q 026793 17 NVLLASIENMQYAVTVDVLN----TVFSAFGTVQKV-AIFEKNG-GTQALIQYPDITTA 69 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~----~iFS~yG~V~kI-~If~k~~-~~~AFVEF~d~esA 69 (233)
+.|+ |..|+.++++++++ ..+...|...-+ +||++.. .--|||||.+.-+-
T Consensus 19 r~lL--v~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~ 75 (331)
T PF14893_consen 19 RALL--VLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNY 75 (331)
T ss_pred hhhe--eecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccch
Confidence 4555 89999999977655 556777776544 6777654 34799999887443
No 172
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=25.79 E-value=14 Score=37.74 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=48.6
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEEc----cCCCeeEEEEeCCHHHHHHHHHHhcCCeec
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIFE----KNGGTQALIQYPDITTAAVAKESLEGHCIY 82 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If~----k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy 82 (233)
+++.|+...++..+|+.+|+.+-.++++.+-+ |+--...+|.|+--..-..|..+|||..+-
T Consensus 234 ll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 234 LLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 56899999999999999999999999986543 222135678888777777888888887664
No 173
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.23 E-value=2.1e+02 Score=18.85 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=28.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccC-CceEEEEEEccC--CCeeEEEEeCCHHHHHHHHHH
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAF-GTVQKVAIFEKN--GGTQALIQYPDITTAAVAKES 75 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~y-G~V~kI~If~k~--~~~~AFVEF~d~esA~~A~~~ 75 (233)
+.|.+.|-+ =....|-+++.++ .+|.++..+... +.....++.++.+.+.++++.
T Consensus 2 i~v~~~d~p--G~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKP--GGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCC--cHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH
Confidence 444455432 3344555667666 566666655543 223455666675544444443
No 174
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.03 E-value=2.3e+02 Score=19.37 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=31.6
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccC-CceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAF-GTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHC 80 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~y-G~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~ 80 (233)
.+.|.|.|-+ =....+-++|++. .+|+.+.++...+....-+.++|.+.|.++++. +|..
T Consensus 3 ri~v~v~d~p--G~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 3 QLSVFLENKP--GRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred EEEEEEcCCC--ChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCCE
Confidence 3455555543 3345566667666 467788777654432333445555455544443 3443
No 175
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.83 E-value=7.7e+02 Score=24.94 Aligned_cols=13 Identities=0% Similarity=0.120 Sum_probs=9.0
Q ss_pred eEEEEeCCHHHHH
Q 026793 58 QALIQYPDITTAA 70 (233)
Q Consensus 58 ~AFVEF~d~esA~ 70 (233)
|=.|+|.+.+++.
T Consensus 261 ~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 261 YYVVRFNSEEEIS 273 (483)
T ss_pred eEEEecCchhhhh
Confidence 4557888877665
No 176
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=23.57 E-value=98 Score=28.45 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=22.1
Q ss_pred EEeCCCCCCCHHHHHHhhccCCceEEE
Q 026793 22 SIENMQYAVTVDVLNTVFSAFGTVQKV 48 (233)
Q Consensus 22 ~V~NL~y~VTed~L~~iFS~yG~V~kI 48 (233)
.|+||+|.||...|..++..--.+.+.
T Consensus 99 vVaNlPY~Isspii~kll~~~~~~~~~ 125 (259)
T COG0030 99 VVANLPYNISSPILFKLLEEKFIIQDM 125 (259)
T ss_pred EEEcCCCcccHHHHHHHHhccCccceE
Confidence 499999999999999998776555443
No 177
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=23.09 E-value=2.9e+02 Score=22.62 Aligned_cols=46 Identities=26% Similarity=0.223 Sum_probs=32.2
Q ss_pred CCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcC
Q 026793 30 VTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEG 78 (233)
Q Consensus 30 VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG 78 (233)
.+.+.++++-..=|--.| .|..+++ ...|.|+|.++-.+|++.|+.
T Consensus 50 ~~~~~v~~~L~~~gI~~k-si~~~~~--~~~irf~~~~~Ql~Ak~vL~~ 95 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIK-SITPEND--SLLIRFDSPEQSAAAKEVLDR 95 (127)
T ss_pred chHHHHHHHHHHCCCCcc-eEEeeCC--EEEEEECCHHHHHHHHHHHHH
Confidence 456667777777664433 2333333 588999999999999999864
No 178
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=21.46 E-value=54 Score=30.28 Aligned_cols=75 Identities=7% Similarity=-0.066 Sum_probs=53.0
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEE-EEccC---CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVA-IFEKN---GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~-If~k~---~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
.-.+++.++.+.+.+..+-.+|..+|.+.... ++... ..+++.|.|...+.+..|+.......++. +.+..+.
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~---~~~~~dl 164 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDG---NKGEKDL 164 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccccc---ccccCcc
Confidence 45678999999999998999999999776653 33222 13689999999999999998654334332 4444444
Q ss_pred ec
Q 026793 94 SR 95 (233)
Q Consensus 94 Sk 95 (233)
.+
T Consensus 165 ~~ 166 (285)
T KOG4210|consen 165 NT 166 (285)
T ss_pred cc
Confidence 33
No 179
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=21.44 E-value=2.2e+02 Score=26.40 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=39.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhc----cCCceEEEEEEccCCCeeEE----EEeCCHHHHHHHHHHhcCCeecCC-ccceEE
Q 026793 20 LASIENMQYAVTVDVLNTVFS----AFGTVQKVAIFEKNGGTQAL----IQYPDITTAAVAKESLEGHCIYDG-GYCKLH 90 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS----~yG~V~kI~If~k~~~~~AF----VEF~d~esA~~A~~~LNG~~Iy~g-g~~~Lr 90 (233)
+++|.|-..+|.+|+|+.+.. .||.|++.+.... +..-|- +.-.+.+.++.-++ | +|..+ .+|..-
T Consensus 33 ~i~I~~~~~eV~ad~L~~i~elGrGayG~vekmrh~~s-g~imAvKri~~tvn~q~q~r~L~d-l---di~~r~~~CPf~ 107 (282)
T KOG0984|consen 33 LIYIGDRNFEVPADDLVGIEELGRGAYGVVEKMRHIQS-GTIMAVKRIRATVNSQEQKRLLMD-L---DIIMRTVDCPFT 107 (282)
T ss_pred eEEEecCccccchhhhhhhhhhcCCccchhhheeeccC-CeEEEEeeehhhcChHHHHHHHHh-h---hhhccCCCCCeE
Confidence 456777668999999998764 4999888654221 111111 23335555554443 3 33333 157766
Q ss_pred EEe
Q 026793 91 LSY 93 (233)
Q Consensus 91 I~f 93 (233)
|.|
T Consensus 108 V~F 110 (282)
T KOG0984|consen 108 VHF 110 (282)
T ss_pred EEe
Confidence 665
No 180
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=21.00 E-value=99 Score=27.04 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=25.6
Q ss_pred CCCceEEEEEeCCCC--------------CCCHHHHHHhhccCCceE
Q 026793 14 LESNVLLASIENMQY--------------AVTVDVLNTVFSAFGTVQ 46 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y--------------~VTed~L~~iFS~yG~V~ 46 (233)
-|++.+.|+|.|+.- ....+.+.+||++|++..
T Consensus 63 ~p~P~f~Iyi~nIhk~kHGSDSg~YD~eGrFvp~kFe~iF~kya~~~ 109 (174)
T PF05042_consen 63 IPDPFFRIYIKNIHKGKHGSDSGAYDTEGRFVPQKFEEIFSKYAKTG 109 (174)
T ss_pred CCCCceeEEeecccccccCCCccccccCCcCCHHHHHHHHHHhCCCC
Confidence 477899999999853 133667999999998753
No 181
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=20.93 E-value=8.9e+02 Score=26.25 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=14.9
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCee
Q 026793 57 TQALIQYPDITTAAVAKESLEGHCI 81 (233)
Q Consensus 57 ~~AFVEF~d~esA~~A~~~LNG~~I 81 (233)
++.+|=++-..++.+|.. .|..+
T Consensus 510 GVt~IP~~kLt~dl~~~~--egam~ 532 (894)
T KOG0132|consen 510 GVTYIPWEKLTDDLEAWC--EGAML 532 (894)
T ss_pred CeeEeehHhcCHHHHHhh--hhcee
Confidence 577888888877755543 34444
No 182
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.39 E-value=1.5e+02 Score=29.50 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=41.4
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCce-EEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCee
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTV-QKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCI 81 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V-~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~I 81 (233)
||- |-|.+...-.++|-.+|+.|++- -+|.-+++ .+||-.|++...|..|+-. ++.+
T Consensus 393 VlE--Iydfp~efkteDll~~f~~yq~kgfdIkWvDd---thalaVFss~~~AaeaLt~--kh~~ 450 (528)
T KOG4483|consen 393 VLE--IYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD---THALAVFSSVNRAAEALTL--KHDW 450 (528)
T ss_pred eeE--eccCchhhccHHHHHHHHHhhcCCceeEEeec---ceeEEeecchHHHHHHhhc--cCce
Confidence 444 67777677778888899999663 35554554 3699999999999988875 4443
No 183
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=20.07 E-value=2.3e+02 Score=26.39 Aligned_cols=62 Identities=13% Similarity=0.245 Sum_probs=36.7
Q ss_pred CCHHHHHHh-----hccCCceEEEEEEcc----CCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 30 VTVDVLNTV-----FSAFGTVQKVAIFEK----NGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 30 VTed~L~~i-----FS~yG~V~kI~If~k----~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
|..++++-+ |..||.|+.++--+. .+...-|.+.+-- +.-.+++. .|+.||.. +.|.-.|+.
T Consensus 39 I~~EH~r~~~p~~~f~~~GdV~alkaEe~~d~~~gkl~L~A~i~P~-~~Lv~~nk-~gQKlftS--iEi~pnFa~ 109 (276)
T PF05929_consen 39 IWPEHIRSYWPDSPFGNYGDVLALKAEEIDDGGKGKLALFAQIDPN-DELVELNK-AGQKLFTS--IEIDPNFAD 109 (276)
T ss_pred ecHHHhcccCCccccccccceEEEEEEEcccCCCCeEEEEEEeCCC-HHHHHHHH-cCCEEEEE--EEecccccc
Confidence 556666654 899999998866443 2333445555433 44555553 79999863 334334544
Done!