Query 026793
Match_columns 233
No_of_seqs 161 out of 1101
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 22:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zzy_A Polypyrimidine tract-bi 100.0 2.5E-33 8.4E-38 227.4 13.0 108 9-117 19-126 (130)
2 2e5i_A Heterogeneous nuclear r 100.0 2.4E-30 8.3E-35 207.5 14.1 105 11-117 18-122 (124)
3 1sjr_A Polypyrimidine tract-bi 100.0 2E-30 6.9E-35 217.9 12.2 112 7-119 35-146 (164)
4 3r27_A HnRNP L, heterogeneous 99.8 2.6E-18 9E-23 133.3 10.9 85 9-99 14-99 (100)
5 4f25_A Polyadenylate-binding p 99.7 1.6E-17 5.5E-22 128.1 10.2 76 20-98 7-84 (115)
6 4fxv_A ELAV-like protein 1; RN 99.7 2.6E-17 9E-22 124.7 10.6 74 20-96 21-98 (99)
7 1wex_A Hypothetical protein (r 99.7 3.1E-17 1.1E-21 126.4 11.0 82 13-101 12-95 (104)
8 2dnm_A SRP46 splicing factor; 99.7 4.3E-17 1.5E-21 122.0 9.5 90 6-98 1-94 (103)
9 1x4c_A Splicing factor, argini 99.7 1.2E-16 4E-21 121.6 11.9 81 15-98 12-94 (108)
10 2ad9_A Polypyrimidine tract-bi 99.7 7.1E-17 2.4E-21 128.5 11.0 84 12-102 27-112 (119)
11 1sjq_A Polypyrimidine tract-bi 99.7 3.6E-17 1.2E-21 127.8 8.4 80 19-103 17-98 (105)
12 2e5h_A Zinc finger CCHC-type a 99.7 7.8E-17 2.7E-21 118.3 9.8 73 20-95 18-94 (94)
13 2cq3_A RNA-binding protein 9; 99.7 2.9E-16 9.9E-21 117.5 12.9 84 13-99 10-95 (103)
14 2diu_A KIAA0430 protein; struc 99.7 8.5E-17 2.9E-21 124.9 10.1 78 13-100 5-87 (96)
15 2cq1_A PTB-like protein L; RRM 99.7 1.8E-16 6.3E-21 121.7 11.7 82 12-100 11-94 (101)
16 2d9p_A Polyadenylate-binding p 99.7 1.2E-16 4.1E-21 119.6 9.9 84 13-99 10-95 (103)
17 2cqi_A Nucleolysin TIAR; RNA r 99.7 3E-16 1E-20 117.4 12.0 81 16-99 13-95 (103)
18 1x4d_A Matrin 3; structural ge 99.7 8E-17 2.7E-21 124.5 9.1 86 5-97 3-92 (102)
19 1x4a_A Splicing factor, argini 99.7 1.9E-16 6.3E-21 119.9 10.9 79 17-98 21-100 (109)
20 2dgt_A RNA-binding protein 30; 99.7 2.3E-16 7.8E-21 116.1 11.1 80 12-98 4-83 (92)
21 2dgp_A Bruno-like 4, RNA bindi 99.7 1.4E-16 4.8E-21 119.6 9.8 87 12-98 7-97 (106)
22 2cqc_A Arginine/serine-rich sp 99.7 2.1E-16 7.3E-21 115.9 10.2 77 17-96 14-94 (95)
23 2dnh_A Bruno-like 5, RNA bindi 99.7 4E-16 1.4E-20 116.9 11.9 87 10-98 9-98 (105)
24 2cq0_A Eukaryotic translation 99.7 3.4E-16 1.2E-20 117.1 11.5 79 17-98 14-96 (103)
25 3s8s_A Histone-lysine N-methyl 99.7 2.2E-16 7.5E-21 122.1 10.6 76 20-98 8-87 (110)
26 2wbr_A GW182, gawky, LD47780P; 99.7 5.9E-17 2E-21 124.1 7.1 73 19-96 8-80 (89)
27 1why_A Hypothetical protein ri 99.7 3E-16 1E-20 116.5 10.6 79 13-97 14-93 (97)
28 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.8E-16 1.3E-20 112.8 10.8 78 17-97 5-86 (87)
29 3md1_A Nuclear and cytoplasmic 99.7 3.5E-16 1.2E-20 112.1 10.5 76 19-97 2-81 (83)
30 2ywk_A Putative RNA-binding pr 99.7 2.3E-16 7.9E-21 116.0 9.7 77 17-96 15-94 (95)
31 2dgo_A Cytotoxic granule-assoc 99.7 7E-16 2.4E-20 117.5 12.5 82 14-98 11-96 (115)
32 1x5s_A Cold-inducible RNA-bind 99.7 2E-16 6.7E-21 118.0 9.2 79 18-99 12-94 (102)
33 2dnz_A Probable RNA-binding pr 99.7 3.6E-16 1.2E-20 114.9 10.4 77 19-98 6-86 (95)
34 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.1E-16 7.3E-21 113.7 9.0 73 20-95 9-85 (85)
35 2e44_A Insulin-like growth fac 99.7 2.3E-16 8E-21 116.4 9.3 78 18-98 15-93 (96)
36 4a8x_A RNA-binding protein wit 99.7 2.5E-16 8.7E-21 113.7 9.2 75 20-97 6-85 (88)
37 2dgu_A Heterogeneous nuclear r 99.7 7E-16 2.4E-20 115.9 11.8 75 19-100 12-86 (103)
38 2ytc_A PRE-mRNA-splicing facto 99.7 3.4E-16 1.2E-20 112.9 9.3 74 17-95 11-85 (85)
39 2do4_A Squamous cell carcinoma 99.7 7.3E-16 2.5E-20 114.7 11.3 77 19-98 18-97 (100)
40 1whw_A Hypothetical protein ri 99.7 7.1E-16 2.4E-20 114.4 10.8 78 18-98 8-89 (99)
41 2cpz_A CUG triplet repeat RNA- 99.7 6.8E-16 2.3E-20 117.8 10.9 77 19-98 26-106 (115)
42 2dgx_A KIAA0430 protein; RRM d 99.7 5.6E-16 1.9E-20 115.5 10.2 80 15-97 6-90 (96)
43 3ulh_A THO complex subunit 4; 99.7 8.1E-16 2.8E-20 115.5 11.1 80 13-95 24-106 (107)
44 1x4h_A RNA-binding protein 28; 99.7 7.8E-16 2.7E-20 116.1 10.9 78 18-98 15-102 (111)
45 2dnq_A RNA-binding protein 4B; 99.7 8E-16 2.7E-20 112.7 10.7 76 16-98 6-81 (90)
46 2x1f_A MRNA 3'-END-processing 99.7 5E-16 1.7E-20 115.1 9.6 77 20-99 4-84 (96)
47 2err_A Ataxin-2-binding protei 99.7 4.4E-16 1.5E-20 119.0 9.5 78 18-98 29-108 (109)
48 2khc_A Testis-specific RNP-typ 99.7 5.8E-16 2E-20 118.5 10.2 76 17-95 39-118 (118)
49 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.4E-16 1.8E-20 115.6 9.8 77 20-99 14-94 (102)
50 1x5u_A Splicing factor 3B subu 99.7 5.8E-16 2E-20 116.0 9.9 80 17-99 14-97 (105)
51 2dgs_A DAZ-associated protein 99.7 9E-16 3.1E-20 114.1 10.9 76 19-98 11-90 (99)
52 2cpf_A RNA binding motif prote 99.6 4.6E-16 1.6E-20 115.2 8.9 76 20-98 7-89 (98)
53 2cph_A RNA binding motif prote 99.6 8.7E-16 3E-20 115.1 10.5 79 17-98 14-98 (107)
54 2cpj_A Non-POU domain-containi 99.6 8.1E-16 2.8E-20 114.5 10.2 74 20-98 17-90 (99)
55 1whx_A Hypothetical protein ri 99.6 5.7E-16 1.9E-20 119.2 9.6 76 19-99 11-86 (111)
56 2hvz_A Splicing factor, argini 99.6 3.3E-16 1.1E-20 116.8 8.1 75 20-98 2-76 (101)
57 2la4_A Nuclear and cytoplasmic 99.6 3.9E-16 1.3E-20 116.4 8.4 74 18-96 27-100 (101)
58 2do0_A HnRNP M, heterogeneous 99.6 1.9E-15 6.5E-20 114.7 11.8 76 19-97 16-94 (114)
59 1x4f_A Matrin 3; structural ge 99.6 4.5E-16 1.5E-20 122.6 8.5 79 13-98 22-103 (112)
60 1p27_B RNA-binding protein 8A; 99.6 1.2E-15 4.1E-20 114.5 10.4 77 18-97 23-103 (106)
61 1u6f_A Tcubp1, RNA-binding pro 99.6 7.5E-16 2.6E-20 121.0 9.7 80 16-98 40-123 (139)
62 2lkz_A RNA-binding protein 5; 99.6 3.4E-16 1.2E-20 118.8 7.4 79 16-96 7-94 (95)
63 3tyt_A Heterogeneous nuclear r 99.6 1.1E-15 3.7E-20 129.5 11.3 79 15-99 3-82 (205)
64 2la6_A RNA-binding protein FUS 99.6 8.9E-16 3.1E-20 114.3 9.2 78 15-95 10-99 (99)
65 2cpi_A CCR4-NOT transcription 99.6 5.9E-16 2E-20 118.4 8.5 76 20-98 17-102 (111)
66 1x4g_A Nucleolysin TIAR; struc 99.6 1E-15 3.5E-20 116.1 9.6 76 18-98 25-100 (109)
67 2dgv_A HnRNP M, heterogeneous 99.6 1.1E-15 3.7E-20 111.7 9.4 77 19-98 9-87 (92)
68 2e5j_A Methenyltetrahydrofolat 99.6 8.2E-16 2.8E-20 114.4 8.8 75 19-97 20-94 (97)
69 2kt5_A RNA and export factor-b 99.6 2.9E-15 9.9E-20 116.0 12.2 83 14-99 31-116 (124)
70 2lxi_A RNA-binding protein 10; 99.6 2.4E-16 8.3E-21 117.3 5.8 75 21-97 4-83 (91)
71 1x5t_A Splicing factor 3B subu 99.6 8.4E-16 2.9E-20 113.2 8.7 77 19-98 6-87 (96)
72 2dnp_A RNA-binding protein 14; 99.6 1E-15 3.5E-20 112.2 8.7 72 19-97 10-81 (90)
73 2jvr_A Nucleolar protein 3; RN 99.6 6.5E-16 2.2E-20 120.7 8.1 80 15-97 25-105 (111)
74 2cpe_A RNA-binding protein EWS 99.6 1.4E-15 4.8E-20 115.5 9.6 79 17-98 14-104 (113)
75 2dng_A Eukaryotic translation 99.6 3.3E-15 1.1E-19 112.0 11.4 87 6-98 4-94 (103)
76 2div_A TRNA selenocysteine ass 99.6 9.9E-16 3.4E-20 113.6 8.4 76 20-98 11-95 (99)
77 1wi8_A EIF-4B, eukaryotic tran 99.6 2.4E-15 8.4E-20 112.9 10.6 80 14-98 11-95 (104)
78 2jvo_A Nucleolar protein 3; nu 99.6 1.3E-15 4.3E-20 116.9 9.1 75 17-98 30-104 (108)
79 2a3j_A U1 small nuclear ribonu 99.6 1.1E-15 3.7E-20 121.9 8.6 77 20-99 31-112 (127)
80 3p5t_L Cleavage and polyadenyl 99.6 5.7E-16 2E-20 114.0 6.4 76 19-97 2-83 (90)
81 2kxn_B Transformer-2 protein h 99.6 1.4E-15 4.7E-20 120.4 8.9 77 19-98 47-127 (129)
82 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.6E-15 8.8E-20 117.0 10.3 78 14-94 59-140 (140)
83 2fy1_A RNA-binding motif prote 99.6 2.9E-15 9.9E-20 116.0 10.5 78 19-99 8-88 (116)
84 2jrs_A RNA-binding protein 39; 99.6 4.1E-15 1.4E-19 113.8 11.1 79 16-97 24-106 (108)
85 2xnq_A Nuclear polyadenylated 99.6 2.7E-15 9.2E-20 112.6 9.7 72 19-97 23-95 (97)
86 2kvi_A Nuclear polyadenylated 99.6 2.2E-15 7.4E-20 112.1 9.1 74 18-98 10-84 (96)
87 3ucg_A Polyadenylate-binding p 99.6 3.3E-15 1.1E-19 108.3 9.7 74 20-97 8-85 (89)
88 1nu4_A U1A RNA binding domain; 99.6 9.3E-16 3.2E-20 113.1 6.9 77 20-99 10-91 (97)
89 1oo0_B CG8781-PA, drosophila Y 99.6 4E-15 1.4E-19 112.5 10.4 77 18-97 26-106 (110)
90 3ex7_B RNA-binding protein 8A; 99.6 2.5E-15 8.6E-20 116.1 9.4 78 18-98 22-103 (126)
91 1h2v_Z 20 kDa nuclear CAP bind 99.6 4.6E-15 1.6E-19 119.0 11.2 77 18-97 39-119 (156)
92 2fc9_A NCL protein; structure 99.6 2.3E-15 7.7E-20 112.3 8.8 88 5-97 3-91 (101)
93 2ek1_A RNA-binding protein 12; 99.6 1.4E-15 4.9E-20 111.7 7.6 75 19-96 16-94 (95)
94 2dhg_A TRNA selenocysteine ass 99.6 2.2E-15 7.4E-20 112.7 8.6 79 17-98 8-91 (104)
95 3lqv_A PRE-mRNA branch site pr 99.6 3.2E-15 1.1E-19 113.8 9.7 76 20-98 10-86 (115)
96 2cqp_A RNA-binding protein 12; 99.6 2.5E-15 8.5E-20 111.2 8.8 78 17-97 14-95 (98)
97 2cpd_A Apobec-1 stimulating pr 99.6 6.6E-15 2.3E-19 109.6 11.1 75 17-98 14-90 (99)
98 1p1t_A Cleavage stimulation fa 99.6 2.4E-15 8.2E-20 112.2 8.6 76 20-98 10-89 (104)
99 2cq4_A RNA binding motif prote 99.6 3.7E-15 1.2E-19 113.6 9.6 75 19-97 26-104 (114)
100 3beg_B Splicing factor, argini 99.6 1.9E-15 6.6E-20 116.6 8.2 65 17-84 15-79 (115)
101 2cpx_A Hypothetical protein FL 99.6 2E-15 6.8E-20 114.7 8.0 77 19-98 26-106 (115)
102 2dh8_A DAZ-associated protein 99.6 2.2E-15 7.5E-20 113.1 8.0 86 9-98 7-96 (105)
103 3ns6_A Eukaryotic translation 99.6 1.4E-15 4.8E-20 114.5 6.9 76 20-97 8-93 (100)
104 2i2y_A Fusion protein consists 99.6 3.8E-15 1.3E-19 118.8 9.7 78 16-97 71-148 (150)
105 2cqd_A RNA-binding region cont 99.6 1.1E-14 3.9E-19 111.2 11.8 77 17-97 16-96 (116)
106 1x5p_A Negative elongation fac 99.6 1.2E-14 4.2E-19 108.0 11.6 73 19-98 16-88 (97)
107 1wf1_A RNA-binding protein RAL 99.6 2.5E-15 8.4E-20 114.1 7.9 73 19-98 28-101 (110)
108 2cq2_A Hypothetical protein LO 99.6 2.7E-15 9.3E-20 118.8 8.5 80 13-97 22-106 (114)
109 2dgw_A Probable RNA-binding pr 99.6 8.5E-15 2.9E-19 107.2 10.4 78 15-97 7-87 (91)
110 2nlw_A Eukaryotic translation 99.6 3.8E-15 1.3E-19 112.9 8.3 75 20-96 17-99 (105)
111 2e5g_A U6 snRNA-specific termi 99.6 7.1E-15 2.4E-19 108.7 9.5 75 18-97 8-82 (94)
112 1x5o_A RNA binding motif, sing 99.6 1E-14 3.5E-19 110.9 10.4 79 19-97 26-112 (114)
113 2kn4_A Immunoglobulin G-bindin 99.6 7.1E-15 2.4E-19 117.4 10.0 80 16-98 68-151 (158)
114 2jwn_A Embryonic polyadenylate 99.6 6.5E-15 2.2E-19 113.5 9.2 77 19-99 37-117 (124)
115 1x4e_A RNA binding motif, sing 99.6 1.3E-15 4.5E-20 110.0 4.9 73 19-94 6-82 (85)
116 2cqh_A IGF-II mRNA-binding pro 99.6 4.1E-15 1.4E-19 109.3 7.4 74 19-98 9-84 (93)
117 3nmr_A Cugbp ELAV-like family 99.6 1.1E-14 3.9E-19 115.1 10.1 76 19-94 96-174 (175)
118 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.3E-15 1.1E-19 112.1 6.3 76 17-97 18-98 (100)
119 1fjc_A Nucleolin RBD2, protein 99.6 5.7E-15 2E-19 108.9 7.5 76 18-97 16-91 (96)
120 2ki2_A SS-DNA binding protein 99.6 1.7E-15 5.7E-20 110.6 4.5 76 19-98 2-81 (90)
121 2pe8_A Splicing factor 45; RRM 99.6 9.3E-15 3.2E-19 112.7 9.0 86 9-99 1-96 (105)
122 2mss_A Protein (musashi1); RNA 99.6 3.9E-15 1.4E-19 105.2 6.3 71 20-94 1-75 (75)
123 1x4b_A Heterogeneous nuclear r 99.6 1.1E-14 3.6E-19 111.3 9.2 77 18-98 27-107 (116)
124 2cqg_A TDP-43, TAR DNA-binding 99.6 2.4E-14 8.1E-19 107.0 10.9 76 18-98 15-94 (103)
125 1wg1_A KIAA1579 protein, homol 99.6 1.3E-14 4.3E-19 106.3 9.2 77 19-101 6-82 (88)
126 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.4E-14 4.8E-19 117.8 10.4 78 19-99 73-154 (165)
127 2m2b_A RNA-binding protein 10; 99.6 3.5E-15 1.2E-19 117.2 6.4 77 18-98 23-109 (131)
128 3n9u_C Cleavage and polyadenyl 99.6 6.7E-15 2.3E-19 120.4 8.2 78 19-99 56-139 (156)
129 2krb_A Eukaryotic translation 99.6 3.2E-15 1.1E-19 107.8 5.5 70 20-91 3-80 (81)
130 3s7r_A Heterogeneous nuclear r 99.6 2.4E-14 8.1E-19 103.8 9.9 72 19-94 12-87 (87)
131 3pgw_A U1-A; protein-RNA compl 99.6 2.1E-14 7.3E-19 123.5 11.3 74 20-96 209-282 (282)
132 4f02_A Polyadenylate-binding p 99.5 1.3E-14 4.4E-19 121.6 9.2 75 20-97 105-181 (213)
133 1wg5_A Heterogeneous nuclear r 99.5 2.7E-14 9.1E-19 108.0 9.9 81 16-100 13-97 (104)
134 2lea_A Serine/arginine-rich sp 99.5 4.7E-15 1.6E-19 118.0 5.9 79 17-98 46-128 (135)
135 2adc_A Polypyrimidine tract-bi 99.5 2.1E-14 7E-19 121.6 9.9 96 19-118 35-135 (229)
136 1uaw_A Mouse-musashi-1; RNP-ty 99.5 8.8E-15 3E-19 103.4 6.4 71 20-94 2-76 (77)
137 3pgw_A U1-A; protein-RNA compl 99.5 2.9E-13 9.8E-18 116.5 17.2 76 20-98 11-91 (282)
138 2cpy_A RNA-binding protein 12; 99.5 1.9E-14 6.7E-19 110.4 8.5 81 15-99 12-96 (114)
139 3md3_A Nuclear and cytoplasmic 99.5 7.8E-14 2.7E-18 109.1 12.2 76 17-95 86-165 (166)
140 2dit_A HIV TAT specific factor 99.5 5.6E-14 1.9E-18 107.7 10.5 79 14-97 13-102 (112)
141 1fxl_A Paraneoplastic encephal 99.5 3E-14 1E-18 111.6 9.1 74 20-94 90-167 (167)
142 2dis_A Unnamed protein product 99.5 2.6E-14 8.8E-19 107.6 8.4 77 19-98 9-93 (109)
143 2db1_A Heterogeneous nuclear r 99.5 1.7E-14 5.8E-19 111.9 7.4 78 17-98 16-99 (118)
144 2rs2_A Musashi-1, RNA-binding 99.5 3.3E-14 1.1E-18 108.7 8.9 77 18-98 25-105 (109)
145 1fj7_A Nucleolin RBD1, protein 99.5 3.5E-15 1.2E-19 111.2 3.4 77 17-97 16-95 (101)
146 2qfj_A FBP-interacting repress 99.5 5E-14 1.7E-18 115.5 10.1 77 19-98 126-206 (216)
147 1s79_A Lupus LA protein; RRM, 99.5 3.1E-14 1E-18 109.0 8.3 73 20-96 13-88 (103)
148 1wel_A RNA-binding protein 12; 99.5 1.7E-14 5.9E-19 112.0 7.0 78 17-98 24-105 (124)
149 1b7f_A Protein (SXL-lethal pro 99.5 6.2E-14 2.1E-18 110.4 10.2 74 20-94 91-168 (168)
150 3q2s_C Cleavage and polyadenyl 99.5 2.3E-14 8E-19 123.6 8.4 78 19-99 69-152 (229)
151 3egn_A RNA-binding protein 40; 99.5 2.5E-14 8.4E-19 113.2 7.8 77 19-98 46-131 (143)
152 2fc8_A NCL protein; structure 99.5 8.1E-14 2.8E-18 103.7 10.1 74 19-98 16-93 (102)
153 3d2w_A TAR DNA-binding protein 99.5 5.7E-14 1.9E-18 104.2 9.1 74 19-98 12-85 (89)
154 1wez_A HnRNP H', FTP-3, hetero 99.5 5.4E-14 1.9E-18 106.9 9.1 80 14-98 11-93 (102)
155 1qm9_A Polypyrimidine tract-bi 99.5 3.7E-14 1.3E-18 115.9 8.4 93 20-116 5-102 (198)
156 3md3_A Nuclear and cytoplasmic 99.5 6.5E-14 2.2E-18 109.6 9.2 76 20-98 2-80 (166)
157 3nmr_A Cugbp ELAV-like family 99.5 6.1E-14 2.1E-18 110.9 8.9 80 18-97 3-88 (175)
158 1fxl_A Paraneoplastic encephal 99.5 1.2E-13 4.1E-18 108.1 10.4 76 20-98 4-83 (167)
159 2bz2_A Negative elongation fac 99.5 7.1E-14 2.4E-18 109.6 9.0 75 17-98 38-112 (121)
160 2yh0_A Splicing factor U2AF 65 99.5 1.2E-13 4.2E-18 111.7 10.3 79 16-97 112-194 (198)
161 1b7f_A Protein (SXL-lethal pro 99.5 1E-13 3.5E-18 109.2 9.5 75 20-97 5-83 (168)
162 2f3j_A RNA and export factor b 99.5 1.1E-13 3.9E-18 115.1 9.8 79 17-98 87-168 (177)
163 2adc_A Polypyrimidine tract-bi 99.5 1.1E-13 3.7E-18 117.1 9.5 76 19-97 152-228 (229)
164 1iqt_A AUF1, heterogeneous nuc 99.5 1.8E-14 6.2E-19 101.5 3.9 71 20-94 1-75 (75)
165 2hzc_A Splicing factor U2AF 65 99.5 1.1E-13 3.9E-18 99.7 8.1 68 19-92 7-85 (87)
166 1fje_B Nucleolin RBD12, protei 99.5 1.3E-13 4.3E-18 110.1 9.2 76 18-97 99-174 (175)
167 1qm9_A Polypyrimidine tract-bi 99.5 8.4E-14 2.9E-18 113.7 8.3 75 20-97 122-197 (198)
168 2g4b_A Splicing factor U2AF 65 99.5 1.8E-13 6.3E-18 108.4 9.7 73 19-94 95-171 (172)
169 2qfj_A FBP-interacting repress 99.5 1.7E-13 5.8E-18 112.3 9.6 76 19-97 29-108 (216)
170 4f02_A Polyadenylate-binding p 99.5 1.9E-13 6.6E-18 114.4 10.0 77 18-97 15-95 (213)
171 2hgl_A HNRPF protein, heteroge 99.5 5.4E-14 1.9E-18 113.4 6.2 79 17-99 43-127 (136)
172 2lcw_A RNA-binding protein FUS 99.2 4.9E-15 1.7E-19 113.4 0.0 78 18-98 7-96 (116)
173 2lmi_A GRSF-1, G-rich sequence 99.5 2.4E-14 8.2E-19 108.8 3.6 79 16-98 9-93 (107)
174 2dnn_A RNA-binding protein 12; 99.5 2E-13 6.9E-18 106.0 8.7 86 6-96 4-92 (109)
175 2xs2_A Deleted in azoospermia- 99.4 1.7E-13 5.8E-18 102.2 7.7 75 18-97 9-86 (102)
176 2cjk_A Nuclear polyadenylated 99.4 1.3E-13 4.4E-18 108.8 7.2 75 19-97 88-166 (167)
177 1wf0_A TDP-43, TAR DNA-binding 99.4 2.1E-13 7.2E-18 99.3 7.6 74 19-98 6-79 (88)
178 1l3k_A Heterogeneous nuclear r 99.4 5.4E-13 1.9E-17 107.7 9.6 76 19-98 105-184 (196)
179 3v4m_A Splicing factor U2AF 65 99.4 5.2E-13 1.8E-17 102.7 8.7 80 14-98 3-98 (105)
180 3u1l_A PRE-mRNA-splicing facto 99.4 2.9E-13 9.9E-18 119.3 8.3 77 18-98 134-230 (240)
181 3pgw_S U1-70K; protein-RNA com 99.4 5.3E-13 1.8E-17 125.5 10.6 78 18-98 102-183 (437)
182 2hgn_A Heterogeneous nuclear r 99.4 7.4E-14 2.5E-18 113.1 3.1 79 15-98 43-124 (139)
183 2hgm_A HNRPF protein, heteroge 99.4 2.2E-13 7.6E-18 108.9 5.6 80 15-99 39-123 (126)
184 3sde_A Paraspeckle component 1 99.4 1.4E-12 4.7E-17 112.6 10.8 79 19-102 23-102 (261)
185 1l3k_A Heterogeneous nuclear r 99.4 9.5E-13 3.2E-17 106.3 9.0 77 17-97 12-92 (196)
186 3s6e_A RNA-binding protein 39; 99.4 5.7E-13 1.9E-17 104.7 7.1 82 13-99 4-95 (114)
187 2ghp_A U4/U6 snRNA-associated 99.4 9.1E-13 3.1E-17 113.9 8.9 75 19-97 211-291 (292)
188 3smz_A Protein raver-1, ribonu 99.4 1.5E-12 5.2E-17 112.0 10.2 77 19-98 185-265 (284)
189 2dha_A FLJ20171 protein; RRM d 99.4 3.1E-13 1.1E-17 107.2 4.7 77 18-98 23-106 (123)
190 2dnl_A Cytoplasmic polyadenyla 99.4 2.8E-12 9.6E-17 98.3 9.9 58 19-77 9-73 (114)
191 3tht_A Alkylated DNA repair pr 99.4 1.8E-12 6.1E-17 119.6 10.3 81 12-96 14-98 (345)
192 3ue2_A Poly(U)-binding-splicin 99.4 1.8E-12 6.1E-17 102.3 8.9 81 14-99 18-111 (118)
193 3tyt_A Heterogeneous nuclear r 99.4 1.4E-12 4.6E-17 110.4 8.7 69 14-84 121-193 (205)
194 2ghp_A U4/U6 snRNA-associated 99.3 2.3E-12 8E-17 111.3 9.4 83 18-104 41-125 (292)
195 3smz_A Protein raver-1, ribonu 99.3 5.9E-12 2E-16 108.4 10.6 77 20-102 24-101 (284)
196 2yh0_A Splicing factor U2AF 65 99.3 5.2E-12 1.8E-16 102.1 8.8 72 20-97 6-88 (198)
197 2g4b_A Splicing factor U2AF 65 99.3 6.1E-12 2.1E-16 99.5 8.5 72 20-97 6-88 (172)
198 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.2E-11 4.2E-16 95.0 9.7 64 28-97 27-90 (100)
199 3sde_A Paraspeckle component 1 99.3 1.1E-11 3.6E-16 107.0 9.8 78 20-97 98-179 (261)
200 2voo_A Lupus LA protein; RNA-b 99.3 1.2E-11 4E-16 104.1 9.5 72 20-95 111-185 (193)
201 1fje_B Nucleolin RBD12, protei 99.3 2E-12 7E-17 103.1 4.2 79 15-97 10-91 (175)
202 2cjk_A Nuclear polyadenylated 99.3 8.8E-12 3E-16 98.2 7.5 72 20-96 5-80 (167)
203 1jmt_A Splicing factor U2AF 35 99.3 2E-12 7E-17 99.1 3.2 64 28-94 25-103 (104)
204 2j8a_A Histone-lysine N-methyl 99.2 2.4E-11 8.1E-16 99.5 7.8 76 20-98 4-97 (136)
205 2dnr_A Synaptojanin-1; RRM dom 99.0 3.2E-09 1.1E-13 81.5 9.7 78 14-99 5-88 (91)
206 1owx_A Lupus LA protein, SS-B, 98.9 1.2E-08 4.1E-13 81.6 9.9 75 12-93 14-92 (121)
207 3dxb_A Thioredoxin N-terminall 98.8 4.8E-09 1.6E-13 88.1 6.2 79 15-98 123-214 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.6 4E-08 1.4E-12 76.0 6.3 74 12-93 11-91 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.3 1.8E-06 6.1E-11 68.9 7.7 67 21-92 24-95 (117)
210 1wey_A Calcipressin 1; structu 97.9 2.2E-05 7.5E-10 61.5 6.9 72 22-98 9-85 (104)
211 3pq1_A Poly(A) RNA polymerase; 96.8 0.00067 2.3E-08 64.9 4.1 52 21-74 56-107 (464)
212 1wwh_A Nucleoporin 35, nucleop 96.7 0.0062 2.1E-07 48.6 8.3 62 18-83 24-85 (119)
213 1uw4_A UPF3X; nonsense mediate 96.7 0.013 4.5E-07 44.4 9.6 79 20-98 3-89 (91)
214 2dhx_A Poly (ADP-ribose) polym 96.6 0.0056 1.9E-07 47.9 7.0 59 20-83 10-73 (104)
215 3ctr_A Poly(A)-specific ribonu 96.5 0.0039 1.3E-07 48.5 5.7 58 21-82 8-65 (101)
216 1whv_A Poly(A)-specific ribonu 96.4 0.0085 2.9E-07 46.6 6.6 55 18-79 18-72 (100)
217 2l08_A Regulator of nonsense t 94.6 0.077 2.6E-06 40.8 6.2 78 18-96 9-95 (97)
218 2kn4_A Immunoglobulin G-bindin 94.3 0.058 2E-06 42.1 5.1 32 53-84 10-41 (158)
219 2i2y_A Fusion protein consists 92.2 0.076 2.6E-06 41.3 2.7 38 56-97 13-51 (150)
220 3p3d_A Nucleoporin 53; structu 89.0 0.25 8.5E-06 40.0 3.1 68 20-92 9-94 (132)
221 3d45_A Poly(A)-specific ribonu 86.3 1.5 5.1E-05 41.9 7.2 57 16-79 440-496 (507)
222 2g0c_A ATP-dependent RNA helic 46.6 23 0.0008 24.3 4.0 58 29-94 12-74 (76)
223 1i4w_A Mitochondrial replicati 38.5 19 0.00065 32.7 3.1 32 21-52 145-185 (353)
224 3uzu_A Ribosomal RNA small sub 35.1 19 0.00064 31.3 2.4 30 21-50 117-146 (279)
225 4a4j_A Pacszia, cation-transpo 34.9 85 0.0029 19.7 6.4 57 18-76 3-59 (69)
226 1vjl_A Hypothetical protein TM 34.6 46 0.0016 27.3 4.5 37 28-64 66-104 (164)
227 2m0o_A PHD finger protein 1; t 31.5 18 0.00061 26.7 1.3 21 43-67 45-65 (79)
228 3fut_A Dimethyladenosine trans 31.2 37 0.0013 29.3 3.6 29 21-50 113-141 (271)
229 2lea_A Serine/arginine-rich sp 30.4 11 0.00037 28.8 0.0 27 57-83 5-31 (135)
230 2e5p_A Protein PHF1, PHD finge 30.3 19 0.00066 25.9 1.3 20 43-66 28-47 (68)
231 3fry_A Probable copper-exporti 28.3 1.2E+02 0.0042 19.6 5.3 55 18-75 6-60 (73)
232 4eyt_A Telomerase associated p 25.5 63 0.0021 24.9 3.5 32 57-93 47-78 (129)
233 3tqs_A Ribosomal RNA small sub 24.5 28 0.00097 29.7 1.6 29 22-50 100-128 (255)
234 3ofh_A LDLR chaperone MESD; mo 22.7 2.4E+02 0.0083 21.0 7.6 65 11-80 3-75 (89)
235 1qyr_A KSGA, high level kasuga 22.2 72 0.0025 27.0 3.7 30 20-49 92-121 (252)
236 1wvf_A 4-cresol dehydrogenase 21.4 71 0.0024 29.8 3.8 41 35-75 218-263 (520)
237 2e5q_A PHD finger protein 19; 20.8 16 0.00055 25.9 -0.6 10 57-66 36-45 (63)
238 4bby_A Alkyldihydroxyacetoneph 20.6 81 0.0028 30.6 4.1 46 33-78 358-410 (658)
239 4hcz_A PHD finger protein 1; p 20.5 39 0.0013 23.6 1.3 21 43-67 22-42 (58)
240 3ftd_A Dimethyladenosine trans 20.1 58 0.002 27.4 2.7 29 21-49 98-126 (249)
No 1
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=100.00 E-value=2.5e-33 Score=227.37 Aligned_cols=108 Identities=48% Similarity=0.684 Sum_probs=97.1
Q ss_pred CCCCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccce
Q 026793 9 GKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCK 88 (233)
Q Consensus 9 g~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~ 88 (233)
|...+.+|+||+|+|.||.|++|+++|+++|++||+|++|+|+++..+++|||||+|.++|++|++.|||++||++ ||+
T Consensus 19 ~~~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~-~~~ 97 (130)
T 3zzy_A 19 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCT 97 (130)
T ss_dssp ------CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETT-EEE
T ss_pred ccccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCC-CcE
Confidence 4457788999999999999999999999999999999999999876655699999999999999999999999997 899
Q ss_pred EEEEeecCCcceeecCCCCccccccCCcc
Q 026793 89 LHLSYSRHTDLNVKAYSDKSRDYTVQDQT 117 (233)
Q Consensus 89 LrI~fSk~~~L~Vr~nndksrDYT~p~~~ 117 (233)
|||+|||.++|+|++|+|++||||+|+++
T Consensus 98 LrI~~ak~~~l~v~~n~~~srDyt~~~lp 126 (130)
T 3zzy_A 98 LRIDFSKLTSLNVKYNNDKSRDYTRPDLP 126 (130)
T ss_dssp EEEEECSCSSCCCCCCSSSEEETTCTTCC
T ss_pred EEEEecCCCceeEEecCCCcccCCCCCCC
Confidence 99999999999999999999999998763
No 2
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.97 E-value=2.4e-30 Score=207.48 Aligned_cols=105 Identities=41% Similarity=0.622 Sum_probs=97.3
Q ss_pred CCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 11 KKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 11 ~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
...++++||+|+|.||.+.+|+++|+++|++||.|++|+|+++. +++|||||+|.++|++|++.|||++|+++ ||+|+
T Consensus 18 ~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~-~~~l~ 95 (124)
T 2e5i_A 18 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAG-CCTLK 95 (124)
T ss_dssp CCCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESS-SEEEEEEESSHHHHHHHHHHHTTCCCBTT-BSEEE
T ss_pred CCCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEecCC-CeEEE
Confidence 34568999999999999999999999999999999999998763 34699999999999999999999999987 78999
Q ss_pred EEeecCCcceeecCCCCccccccCCcc
Q 026793 91 LSYSRHTDLNVKAYSDKSRDYTVQDQT 117 (233)
Q Consensus 91 I~fSk~~~L~Vr~nndksrDYT~p~~~ 117 (233)
|+||+.+.|+|+++++++||||+|.++
T Consensus 96 V~~Ak~~~l~v~~n~~~srDyt~~~l~ 122 (124)
T 2e5i_A 96 IEYARPTRLNVIRNDNDSWDYTKPYLG 122 (124)
T ss_dssp EECCSCSCCCCSSCSSSEEESSCCCCC
T ss_pred EEEecCCcceeecCCCCCCCCCCCCCC
Confidence 999999999999999999999998765
No 3
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.97 E-value=2e-30 Score=217.86 Aligned_cols=112 Identities=46% Similarity=0.637 Sum_probs=101.3
Q ss_pred CCCCCCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCcc
Q 026793 7 PDGKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGY 86 (233)
Q Consensus 7 ~~g~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~ 86 (233)
.+|....++++||+|+|.||.+++|+++|+++|++||+|++|+|++++.+++|||||+|.++|++|++.|||++|+++ |
T Consensus 35 ~~g~~~~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~-g 113 (164)
T 1sjr_A 35 DAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-C 113 (164)
T ss_dssp -----CCCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS-C
T ss_pred ccCCCCCCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC-C
Confidence 466777889999999999999999999999999999999999999877668999999999999999999999999986 7
Q ss_pred ceEEEEeecCCcceeecCCCCccccccCCcccc
Q 026793 87 CKLHLSYSRHTDLNVKAYSDKSRDYTVQDQTLL 119 (233)
Q Consensus 87 ~~LrI~fSk~~~L~Vr~nndksrDYT~p~~~~~ 119 (233)
|+|+|+|||.++|+|++++|++||||+|+++.-
T Consensus 114 ~~L~V~~Ak~~~l~vk~nn~rsrDyt~p~lp~~ 146 (164)
T 1sjr_A 114 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSG 146 (164)
T ss_dssp SCEEEEECSSSSCCCCCCSSSEEESSCSCCCCC
T ss_pred cEEEEEEecCCcccccccCCCCccccCCCCCCC
Confidence 999999999999999999999999999876554
No 4
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=133.31 Aligned_cols=85 Identities=25% Similarity=0.355 Sum_probs=72.6
Q ss_pred CCCCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeec-CCccc
Q 026793 9 GKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIY-DGGYC 87 (233)
Q Consensus 9 g~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy-~gg~~ 87 (233)
-....+|+++|. |.||++.+|+++|.++|++||.|.+|+|.+.+ ++|||||+|.++|+.|++.|||..++ .| +
T Consensus 14 ~~~~~~ps~~l~--V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k--g~AFVef~~~~~A~~Av~~ln~~~~~i~G--r 87 (100)
T 3r27_A 14 DPHKTPASPVVH--IRGLIDGVVEADLVEALQEFGPISYVVVMPKK--RQALVEFEDVLGACNAVNYAADNQIYIAG--H 87 (100)
T ss_dssp ---CCCCCSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEETTT--TEEEEEESSHHHHHHHHHHHHHSCEEETT--E
T ss_pred ccccCCCCcEEE--EeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHhcCCCceeCC--c
Confidence 344567888865 99999999999999999999999999988653 49999999999999999999998743 43 7
Q ss_pred eEEEEeecCCcc
Q 026793 88 KLHLSYSRHTDL 99 (233)
Q Consensus 88 ~LrI~fSk~~~L 99 (233)
+|+|+||+.++|
T Consensus 88 ~i~V~~S~~k~l 99 (100)
T 3r27_A 88 PAFVNYSTSQKI 99 (100)
T ss_dssp EEEEEECSCSCC
T ss_pred EEEEEecccccc
Confidence 999999999876
No 5
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=1.6e-17 Score=128.14 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=67.8
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
.|||.||++.+|+++|+++|++||.|++|.|..+.+ .++|||+|++.++|++|++.|||..|.+ ++|+|++++.+
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g---~~i~V~~a~~~ 83 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND---RKVFVGRFKSR 83 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT---EECEEEESSCC
T ss_pred EEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEECCCc
Confidence 478999999999999999999999999998875443 4799999999999999999999999965 69999998765
Q ss_pred c
Q 026793 98 D 98 (233)
Q Consensus 98 ~ 98 (233)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 6
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=124.70 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=66.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
.|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.+ ++|+|+|||
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g---r~l~V~~Ak 97 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS---KTIKVSYAR 97 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC---EEEEEEEee
Confidence 478999999999999999999999999998875332 3699999999999999999999999864 699999997
Q ss_pred C
Q 026793 96 H 96 (233)
Q Consensus 96 ~ 96 (233)
.
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 7
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.1e-17 Score=126.41 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=70.2
Q ss_pred CCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCe--ecCCccceEE
Q 026793 13 ELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHC--IYDGGYCKLH 90 (233)
Q Consensus 13 ~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~--Iy~gg~~~Lr 90 (233)
.+++++| ||.||++.+|+++|.++|++||.|++|.|.+. +++|||||++.++|++|++.|||.. |.+ ++|+
T Consensus 12 ~~p~~~l--~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G---r~l~ 84 (104)
T 1wex_A 12 VSVSPVV--HVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAG---QQAF 84 (104)
T ss_dssp CCCCSEE--EEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSS---SBCE
T ss_pred CCCCCEE--EEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC---EEEE
Confidence 3456665 59999999999999999999999999988765 3599999999999999999998765 543 6999
Q ss_pred EEeecCCccee
Q 026793 91 LSYSRHTDLNV 101 (233)
Q Consensus 91 I~fSk~~~L~V 101 (233)
|+||+.+++..
T Consensus 85 V~~a~~~~~~~ 95 (104)
T 1wex_A 85 FNYSTSKRITR 95 (104)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCccccC
Confidence 99999877653
No 8
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=122.05 Aligned_cols=90 Identities=21% Similarity=0.341 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCee
Q 026793 6 GPDGKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCI 81 (233)
Q Consensus 6 g~~g~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~I 81 (233)
|..|+........-.|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|
T Consensus 1 G~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2dnm_A 1 GSSGSSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL 80 (103)
T ss_dssp CCCCCCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB
T ss_pred CCCCCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 44566556666667788999999999999999999999999998875322 46999999999999999999999998
Q ss_pred cCCccceEEEEeecCCc
Q 026793 82 YDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 82 y~gg~~~LrI~fSk~~~ 98 (233)
.+ +.|+|++++...
T Consensus 81 ~g---~~l~V~~a~~~~ 94 (103)
T 2dnm_A 81 DG---RELRVQVARYGR 94 (103)
T ss_dssp TT---BCCEEEECSSCC
T ss_pred CC---cEEEEEECCcCC
Confidence 65 699999988654
No 9
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=121.57 Aligned_cols=81 Identities=6% Similarity=0.064 Sum_probs=70.4
Q ss_pred CCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCC--ccceEEEE
Q 026793 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDG--GYCKLHLS 92 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~g--g~~~LrI~ 92 (233)
...-..|||.||++.+|+++|.++|++||.|++|.|..+ ++|||+|++.++|++|++.|||..|.+. ..+.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 344567789999999999999999999999999999876 5999999999999999999999999762 01589999
Q ss_pred eecCCc
Q 026793 93 YSRHTD 98 (233)
Q Consensus 93 fSk~~~ 98 (233)
+++.+.
T Consensus 89 ~a~~~~ 94 (108)
T 1x4c_A 89 VDGPRS 94 (108)
T ss_dssp ESSCCS
T ss_pred eCCCCC
Confidence 988754
No 10
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.1e-17 Score=128.45 Aligned_cols=84 Identities=18% Similarity=0.272 Sum_probs=71.5
Q ss_pred CCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcC--CeecCCccceE
Q 026793 12 KELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEG--HCIYDGGYCKL 89 (233)
Q Consensus 12 ~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG--~~Iy~gg~~~L 89 (233)
..+++++| ||.||++.+|+++|.++|++||.|++|.|...+ ++|||+|++.++|++|++.||+ ..|.+ ++|
T Consensus 27 ~~~ps~~L--fVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k--G~AFVeF~~~e~A~~Ai~~l~~~~~~l~G---r~l 99 (119)
T 2ad9_A 27 AGVPSRVI--HIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK--NQAFIEMNTEEAANTMVNYYTSVTPVLRG---QPI 99 (119)
T ss_dssp CSSCCSEE--EEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG--TEEEEECSCHHHHHHHHHHHHHHCCCBTT---BCC
T ss_pred cCCCCCEE--EEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC--CEEEEEECCHHHHHHHHHHhccCCceECC---eEE
Confidence 44556655 599999999999999999999999999998763 5999999999999999999985 45654 699
Q ss_pred EEEeecCCcceee
Q 026793 90 HLSYSRHTDLNVK 102 (233)
Q Consensus 90 rI~fSk~~~L~Vr 102 (233)
+|+||+.+++.-.
T Consensus 100 ~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 100 YIQFSNHKELKTD 112 (119)
T ss_dssp EEEECSSSSCCCC
T ss_pred EEEEccCCCCCcc
Confidence 9999998877643
No 11
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=127.80 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=69.1
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcC--CeecCCccceEEEEeecC
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEG--HCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG--~~Iy~gg~~~LrI~fSk~ 96 (233)
-.|||.||++.+|+++|.++|++||+|++|.|..++ ++|||+|++.++|++|++.|++ ..|.+ ++|+|+||+.
T Consensus 17 ~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k--GfaFVeF~~~~~A~~Ai~~l~~~~~~l~G---r~l~V~~A~~ 91 (105)
T 1sjq_A 17 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK--NQAFIEMNTEEAANTMVNYYTSVTPVLRG---QPIYIQFSNH 91 (105)
T ss_dssp CEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT--TEEEEEESSHHHHHHHHHHHTTSCCEETT---EECCBCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHhccCCceECC---EEEEEEEcCC
Confidence 345699999999999999999999999999998753 5999999999999999999975 56754 6999999998
Q ss_pred Ccceeec
Q 026793 97 TDLNVKA 103 (233)
Q Consensus 97 ~~L~Vr~ 103 (233)
+.+.-..
T Consensus 92 ~~~~~~~ 98 (105)
T 1sjq_A 92 KELKTDS 98 (105)
T ss_dssp SSCCCTT
T ss_pred CCCCccc
Confidence 8776433
No 12
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.8e-17 Score=118.30 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=65.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
.|+|.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|++.++|++|++.|||..|.+ ++|+|+|||
T Consensus 18 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~ak 94 (94)
T 2e5h_A 18 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG---RVIKASIAI 94 (94)
T ss_dssp SEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT---EEEEEEECC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC---cEEEEEecC
Confidence 456999999999999999999999999998875422 4699999999999999999999999865 699999986
No 13
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-16 Score=117.52 Aligned_cols=84 Identities=18% Similarity=0.283 Sum_probs=72.1
Q ss_pred CCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 13 ELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 13 ~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
+.....-.|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.+ +.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~ 86 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG---RKIE 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT---EECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---EEEE
Confidence 3344456678999999999999999999999999998876433 4799999999999999999999999854 6999
Q ss_pred EEeecCCcc
Q 026793 91 LSYSRHTDL 99 (233)
Q Consensus 91 I~fSk~~~L 99 (233)
|++++....
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cq3_A 87 VNNATARVM 95 (103)
T ss_dssp EEECCSSCC
T ss_pred EEEcccCCC
Confidence 999987654
No 14
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.5e-17 Score=124.87 Aligned_cols=78 Identities=14% Similarity=0.255 Sum_probs=67.6
Q ss_pred CCCCceEEEEEeCCCCCCCHHH----HHHhhccC-CceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccc
Q 026793 13 ELESNVLLASIENMQYAVTVDV----LNTVFSAF-GTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYC 87 (233)
Q Consensus 13 ~~pS~VLlV~V~NL~y~VTed~----L~~iFS~y-G~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~ 87 (233)
.+|+..| |||.||++.+++++ |+++|++| |+|++|+ +++|||+|++.++|++|++.|||++|+++
T Consensus 5 ~~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~gr--- 74 (96)
T 2diu_A 5 SSGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFGN--- 74 (96)
T ss_dssp CCCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSSS---
T ss_pred CCCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCCc---
Confidence 3556655 78999999999987 77999999 5999982 26999999999999999999999999984
Q ss_pred eEEEEeecCCcce
Q 026793 88 KLHLSYSRHTDLN 100 (233)
Q Consensus 88 ~LrI~fSk~~~L~ 100 (233)
+|+|+||+..+-.
T Consensus 75 ~i~v~~A~~~sd~ 87 (96)
T 2diu_A 75 RIIVSFTPKNREL 87 (96)
T ss_dssp CCEEESSCCSCCC
T ss_pred eEEEEecCCCcce
Confidence 9999999987533
No 15
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=121.68 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=70.1
Q ss_pred CCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhc--CCeecCCccceE
Q 026793 12 KELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLE--GHCIYDGGYCKL 89 (233)
Q Consensus 12 ~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LN--G~~Iy~gg~~~L 89 (233)
...++++| ||.||++.+|+++|.++|++||.|++|.|.++ +++|||+|++.++|++|++.|+ +..|.+ ++|
T Consensus 11 ~~~p~~~l--~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G---r~l 83 (101)
T 2cq1_A 11 DGAPSRVL--HIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRN---QPI 83 (101)
T ss_dssp CSSCCSEE--EEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETT---EEC
T ss_pred cCCCCCEE--EEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC---cEE
Confidence 34566665 59999999999999999999999999988765 3599999999999999999885 556754 699
Q ss_pred EEEeecCCcce
Q 026793 90 HLSYSRHTDLN 100 (233)
Q Consensus 90 rI~fSk~~~L~ 100 (233)
+|+||+.+.+.
T Consensus 84 ~V~~a~~~~~~ 94 (101)
T 2cq1_A 84 YIQYSNHKELK 94 (101)
T ss_dssp EEEECSCSSCC
T ss_pred EEEEcCcccCc
Confidence 99999988775
No 16
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=119.64 Aligned_cols=84 Identities=15% Similarity=0.270 Sum_probs=71.8
Q ss_pred CCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 13 ELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 13 ~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
..+....+|||.||++.+|+++|+++|++||.|++|.|..+.+ .++|||+|.+.++|++|++.|||..|.+ +.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 86 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT---KPLY 86 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS---SBCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC---cEEE
Confidence 3344566778999999999999999999999999998876522 4699999999999999999999999854 6999
Q ss_pred EEeecCCcc
Q 026793 91 LSYSRHTDL 99 (233)
Q Consensus 91 I~fSk~~~L 99 (233)
|+|++.+.-
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 999887543
No 17
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3e-16 Score=117.45 Aligned_cols=81 Identities=14% Similarity=0.249 Sum_probs=70.7
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
...-.|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.+ +.|+|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~ 89 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG---KEVKVNW 89 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT---EEEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC---CeEEEEE
Confidence 3445677999999999999999999999999998876433 4799999999999999999999999865 6999999
Q ss_pred ecCCcc
Q 026793 94 SRHTDL 99 (233)
Q Consensus 94 Sk~~~L 99 (233)
++....
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987654
No 18
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8e-17 Score=124.49 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=70.7
Q ss_pred CCCCCCCC-CCCCceEEEEEeCCCC-CCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCe--
Q 026793 5 IGPDGKKK-ELESNVLLASIENMQY-AVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHC-- 80 (233)
Q Consensus 5 ~g~~g~~~-~~pS~VLlV~V~NL~y-~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~-- 80 (233)
-|.+.++. ..++++| ||.||++ .+|+++|.++|++||+|.+|.|...+ ++|||||++.++|+.|++.|||..
T Consensus 3 ~~~~~~~~~~~p~~~l--~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~ 78 (102)
T 1x4d_A 3 SGSSGQKGRVETRRVV--HIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPAL 78 (102)
T ss_dssp CCCCCCCCCCCCCCEE--EEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred CCCCCCCCCCCCCCEE--EEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCce
Confidence 35556553 3345554 5999999 99999999999999999999987654 489999999999999999999764
Q ss_pred ecCCccceEEEEeecCC
Q 026793 81 IYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 81 Iy~gg~~~LrI~fSk~~ 97 (233)
|.+ ++|+|+||+..
T Consensus 79 ~~G---r~l~V~~a~~~ 92 (102)
T 1x4d_A 79 VFG---KPVRVHLSQKY 92 (102)
T ss_dssp ETT---EECEEEEECCC
T ss_pred ECC---cEEEEEECCCC
Confidence 644 69999999843
No 19
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=119.93 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=68.8
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
..-.|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|++.++|++|++.|||..|.+ +.|+|+|++
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a~ 97 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG---YRLRVEFPR 97 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT---EECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEcc
Confidence 34567799999999999999999999999999886533 35799999999999999999999999854 699999987
Q ss_pred CCc
Q 026793 96 HTD 98 (233)
Q Consensus 96 ~~~ 98 (233)
..+
T Consensus 98 ~~~ 100 (109)
T 1x4a_A 98 SGR 100 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 20
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-16 Score=116.11 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=69.6
Q ss_pred CCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 12 KELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 12 ~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
.......-.|||.||++.+|+++|+++|++||.|++|.|.+. +|||+|++.++|++|++.|||..|.+ +.|+|
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V 76 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQG---KRMHV 76 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETT---EEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCC---cEEEE
Confidence 334445567789999999999999999999999999988743 89999999999999999999999965 69999
Q ss_pred EeecCCc
Q 026793 92 SYSRHTD 98 (233)
Q Consensus 92 ~fSk~~~ 98 (233)
++++...
T Consensus 77 ~~a~~~~ 83 (92)
T 2dgt_A 77 QLSTSRL 83 (92)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9987653
No 21
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.68 E-value=1.4e-16 Score=119.56 Aligned_cols=87 Identities=13% Similarity=0.206 Sum_probs=71.9
Q ss_pred CCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccc
Q 026793 12 KELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYC 87 (233)
Q Consensus 12 ~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~ 87 (233)
...+.....|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|.+.++|++|++.|||..|..+..+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 3444556677899999999999999999999999999887532 247999999999999999999999987432236
Q ss_pred eEEEEeecCCc
Q 026793 88 KLHLSYSRHTD 98 (233)
Q Consensus 88 ~LrI~fSk~~~ 98 (233)
.|+|.|++...
T Consensus 87 ~l~v~~a~~~~ 97 (106)
T 2dgp_A 87 PIQVKPADSES 97 (106)
T ss_dssp CCEEEECCCCS
T ss_pred eEEEEECCccc
Confidence 89999987653
No 22
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=115.90 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=66.8
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.--.|+|.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|++.++|++|++.|||..|.+ ++|+|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 90 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG---RRIRVS 90 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 344556999999999999999999999999998875432 3699999999999999999999999865 699999
Q ss_pred eecC
Q 026793 93 YSRH 96 (233)
Q Consensus 93 fSk~ 96 (233)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9874
No 23
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.68 E-value=4e-16 Score=116.86 Aligned_cols=87 Identities=13% Similarity=0.237 Sum_probs=71.7
Q ss_pred CCCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCcc
Q 026793 10 KKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGY 86 (233)
Q Consensus 10 ~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~ 86 (233)
.....+++. |||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.++..
T Consensus 9 ~~~~~~~~~--l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~ 86 (105)
T 2dnh_A 9 ESRGGRDRK--LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 86 (105)
T ss_dssp CCSCCCCCE--EEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCS
T ss_pred cccCCCCCE--EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCC
Confidence 333444444 56999999999999999999999999998875433 3799999999999999999999999876322
Q ss_pred ceEEEEeecCCc
Q 026793 87 CKLHLSYSRHTD 98 (233)
Q Consensus 87 ~~LrI~fSk~~~ 98 (233)
+.|+|+|++...
T Consensus 87 ~~l~V~~a~~~~ 98 (105)
T 2dnh_A 87 SSLVVKFADTDK 98 (105)
T ss_dssp SCCEEEESCSSC
T ss_pred ccEEEEECccCc
Confidence 589999988754
No 24
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.4e-16 Score=117.14 Aligned_cols=79 Identities=15% Similarity=0.253 Sum_probs=68.8
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.--.|||.||++.+|+++|.++|++||.|++|.|..+. . .++|||+|.+.++|++|++.|||..|.+ +.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 90 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH---LILNVE 90 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC---cEEEEE
Confidence 44556799999999999999999999999999887543 2 3699999999999999999999999865 699999
Q ss_pred eecCCc
Q 026793 93 YSRHTD 98 (233)
Q Consensus 93 fSk~~~ 98 (233)
|++.+.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 987654
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=122.08 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=66.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
.|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|++.++|++|++.|||+.|.+ +.|+|++++
T Consensus 8 ~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g---r~i~V~~a~ 84 (110)
T 3s8s_A 8 EVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG---NIIHAQLDI 84 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECS
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEECC
Confidence 467999999999999999999999999998865332 4799999999999999999999999965 699999987
Q ss_pred CCc
Q 026793 96 HTD 98 (233)
Q Consensus 96 ~~~ 98 (233)
..+
T Consensus 85 ~~~ 87 (110)
T 3s8s_A 85 KGQ 87 (110)
T ss_dssp TTH
T ss_pred CCc
Confidence 553
No 26
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=5.9e-17 Score=124.14 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=66.2
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
.+|+|.||.+.+|+++|+++|++||+|+++.+... +++|||||.|.++|++|++.|||..+++ ++|+|+++..
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~--kGfaFVey~~~~eA~~Ai~~Ln~~~l~g---r~I~V~~A~e 80 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN--QGIALCKYTTREEANKAQMALNNCVLAN---TTIFAESPSE 80 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTEEETT---EEEEEECCCH
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC--CcEEEEEECCHHHHHHHHHHhcCCEECC---cEEEEEECCH
Confidence 45679999999999999999999999999988764 4599999999999999999999999976 5999999853
No 27
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=116.53 Aligned_cols=79 Identities=15% Similarity=0.285 Sum_probs=68.4
Q ss_pred CCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecC-CccceEEE
Q 026793 13 ELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYD-GGYCKLHL 91 (233)
Q Consensus 13 ~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~-gg~~~LrI 91 (233)
..+++. |||.||++.+|+++|+++|++||.|++|.|... .++|||+|++.++|++|++.|||..|.+ + ++|+|
T Consensus 14 ~~~~~~--l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g--~~l~V 87 (97)
T 1why_A 14 ANPTTR--LWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPD--RRLRV 87 (97)
T ss_dssp CCCCSC--EEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSS--CBCEE
T ss_pred CCCCCE--EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCC--cEEEE
Confidence 344444 569999999999999999999999999988765 3589999999999999999999999873 3 68999
Q ss_pred EeecCC
Q 026793 92 SYSRHT 97 (233)
Q Consensus 92 ~fSk~~ 97 (233)
+|++.+
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998865
No 28
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=3.8e-16 Score=112.82 Aligned_cols=78 Identities=9% Similarity=0.232 Sum_probs=66.8
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
+-.+|+|.||++.+|+++|+++|++||.|++|.|..+. . .++|||+|.+.++|++|++.|||..|.+ +.|+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG---RQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEE
Confidence 34567899999999999999999999999999887543 1 3699999999999999999999999854 699999
Q ss_pred eecCC
Q 026793 93 YSRHT 97 (233)
Q Consensus 93 fSk~~ 97 (233)
|++.+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 98764
No 29
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=3.5e-16 Score=112.11 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=67.2
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
.+|+|.||++.+|+++|.++|++||.|.+|.|..+.. .++|||+|.+.++|++|++.|||..|.+ +.|+|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG---RPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT---EECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC---cEEEEEec
Confidence 3688999999999999999999999999998865421 4799999999999999999999999854 69999998
Q ss_pred cCC
Q 026793 95 RHT 97 (233)
Q Consensus 95 k~~ 97 (233)
+.+
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 864
No 30
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=115.98 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=67.3
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
.--.|+|.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|++.++|++|++.|||..|.+ ++|+|+|
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~ 91 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG---RPINVSG 91 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT---EECEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC---CEEEEEE
Confidence 344667999999999999999999999999998875432 3699999999999999999999999865 6999999
Q ss_pred ecC
Q 026793 94 SRH 96 (233)
Q Consensus 94 Sk~ 96 (233)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 31
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=7e-16 Score=117.52 Aligned_cols=82 Identities=12% Similarity=0.258 Sum_probs=70.7
Q ss_pred CCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC--C--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceE
Q 026793 14 LESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN--G--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKL 89 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~--~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~L 89 (233)
....-.+|||.||++.+|+++|+++|++||.|++|.|..+. + .++|||+|.+.++|++|++.|||..|.+ +.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 87 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG---RQI 87 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT---EEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---EEE
Confidence 34455677899999999999999999999999999887643 2 3699999999999999999999999855 699
Q ss_pred EEEeecCCc
Q 026793 90 HLSYSRHTD 98 (233)
Q Consensus 90 rI~fSk~~~ 98 (233)
+|+|++...
T Consensus 88 ~V~~a~~~~ 96 (115)
T 2dgo_A 88 RTNWATRKP 96 (115)
T ss_dssp EEEESSCCC
T ss_pred EEEEccCCC
Confidence 999988654
No 32
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2e-16 Score=117.99 Aligned_cols=79 Identities=13% Similarity=0.269 Sum_probs=68.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
...|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|.+.++|++|++.|||..|.+ ++|+|+|
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~ 88 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG---RQIRVDQ 88 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS---CCCEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEE
Confidence 3455699999999999999999999999999887643 24699999999999999999999999865 5899999
Q ss_pred ecCCcc
Q 026793 94 SRHTDL 99 (233)
Q Consensus 94 Sk~~~L 99 (233)
++...-
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987643
No 33
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=114.94 Aligned_cols=77 Identities=17% Similarity=0.322 Sum_probs=67.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-.|+|.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|++.++|++|++.|||..|.+ ++|+|+++
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a 82 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG---RPMRVGHV 82 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS---SCCEEEES
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEEEc
Confidence 3567999999999999999999999999998876432 4699999999999999999999999865 58999998
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+.+.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7653
No 34
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=2.1e-16 Score=113.71 Aligned_cols=73 Identities=15% Similarity=0.291 Sum_probs=64.5
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEcc-CC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEK-NG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k-~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
.|+|.||++.+|+++|+++|++||.|++|.|..+ .. .++|||+|++.++|++|++.|||..|.+ ++|+|+|||
T Consensus 9 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~ak 85 (85)
T 3mdf_A 9 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIRVNLAK 85 (85)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECC
T ss_pred EEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEcC
Confidence 4569999999999999999999999999987543 21 4699999999999999999999999854 699999986
No 35
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=116.41 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=68.0
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEE-EEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKV-AIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI-~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
--.|||.||++.+|+++|+++|++||.|++| .|..+...+.|||+|.+.++|++|++.|||..|.+ ++|+|+|++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V~~a~~ 91 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN---FTLKVAYIPD 91 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS---CBCEEEECCC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEcCc
Confidence 4567899999999999999999999999999 46655444569999999999999999999999864 6999999887
Q ss_pred Cc
Q 026793 97 TD 98 (233)
Q Consensus 97 ~~ 98 (233)
++
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 36
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=113.74 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=66.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
+|+|.||++.+|+++|.++|++||.|.+|.|..+. ..++|||+|++.++|++|++.|||..|.+ +.|+|+++
T Consensus 6 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a 82 (88)
T 4a8x_A 6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG---QEITATAV 82 (88)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC---eEEEEEEC
Confidence 56799999999999999999999999999876433 34699999999999999999999999865 69999998
Q ss_pred cCC
Q 026793 95 RHT 97 (233)
Q Consensus 95 k~~ 97 (233)
+..
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 37
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=7e-16 Score=115.90 Aligned_cols=75 Identities=21% Similarity=0.411 Sum_probs=66.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
-.|||.||++.+|+++|+++|++||.|++|.|.+ .+|||+|++.++|++|++.|||..|.+ +.|+|+|++...
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~~~~ 84 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLEG---ENIEIVFAKPPD 84 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEETT---EEEEEEECCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccCC---CEEEEEEcCCCc
Confidence 4456999999999999999999999999998863 389999999999999999999999864 699999998765
Q ss_pred ce
Q 026793 99 LN 100 (233)
Q Consensus 99 L~ 100 (233)
-.
T Consensus 85 ~~ 86 (103)
T 2dgu_A 85 QK 86 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 38
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=112.89 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=65.6
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHh-cCCeecCCccceEEEEeec
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESL-EGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~L-NG~~Iy~gg~~~LrI~fSk 95 (233)
..-.|+|.||++.+|+++|+++|++||.|++|.|...+ ++|||+|++.++|++|++.| ||..|.+ ++|+|+|+|
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k--g~afV~f~~~~~A~~a~~~l~~~~~~~g---~~l~v~~ak 85 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ--QCAFIQFATRQAAEVAAEKSFNKLIVNG---RRLNVKWGR 85 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHTTTTTCEETT---EECCEEECC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC--CEEEEEECCHHHHHHHHHHhcCCeeECC---CEEEEEecC
Confidence 34456799999999999999999999999999998753 48999999999999999999 9988854 699999986
No 39
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.3e-16 Score=114.75 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=67.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
-.|+|.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.+ +.|+|++++
T Consensus 18 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~ 94 (100)
T 2do4_A 18 HKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE---NIIKVAISN 94 (100)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS---CEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEEECC
Confidence 3467999999999999999999999999998876442 3799999999999999999999998865 599999987
Q ss_pred CCc
Q 026793 96 HTD 98 (233)
Q Consensus 96 ~~~ 98 (233)
...
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 40
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7.1e-16 Score=114.36 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=68.4
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
--+|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|.+.++|++|++.|||..|.+ ++|+|++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~ 84 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG---RMLHVLP 84 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS---CEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEE
Confidence 3456799999999999999999999999999887543 24799999999999999999999999865 5999999
Q ss_pred ecCCc
Q 026793 94 SRHTD 98 (233)
Q Consensus 94 Sk~~~ 98 (233)
++.+.
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 88764
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=6.8e-16 Score=117.82 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=67.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-.|||.||++.+|+++|+++|++||.|++|.|..+. . .++|||+|.+.++|++|++.|||..|.+ ++|+|+|+
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a 102 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM---KRLKVQLK 102 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT---EECEEECC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEEc
Confidence 356799999999999999999999999999886543 2 3699999999999999999999999864 69999998
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+.+.
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 42
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.6e-16 Score=115.50 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=69.9
Q ss_pred CCceEEEEEeCCCCCCCHHHHH----HhhccCCceEEEEEEccC-CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceE
Q 026793 15 ESNVLLASIENMQYAVTVDVLN----TVFSAFGTVQKVAIFEKN-GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKL 89 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~----~iFS~yG~V~kI~If~k~-~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~L 89 (233)
.++.-+|||.||++.+|+++|. ++|++||.|++|.|..+. ..++|||+|++.++|++|++.|||..|.+ ++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g---r~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS---KKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT---EEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC---eEE
Confidence 3445678999999999999999 999999999999987543 25699999999999999999999999865 699
Q ss_pred EEEeecCC
Q 026793 90 HLSYSRHT 97 (233)
Q Consensus 90 rI~fSk~~ 97 (233)
+|++++..
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 99998764
No 43
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=8.1e-16 Score=115.54 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=68.9
Q ss_pred CCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceE
Q 026793 13 ELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKL 89 (233)
Q Consensus 13 ~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~L 89 (233)
......-.|+|.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.+ +.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 100 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG---RPM 100 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC---cEE
Confidence 3344556678999999999999999999999999998875432 3699999999999999999999999954 699
Q ss_pred EEEeec
Q 026793 90 HLSYSR 95 (233)
Q Consensus 90 rI~fSk 95 (233)
+|+|++
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999985
No 44
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.8e-16 Score=116.11 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=67.8
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhc------CCeecCCccc
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLE------GHCIYDGGYC 87 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LN------G~~Iy~gg~~ 87 (233)
.-+|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|.+.++|++|++.|| |..|.+ +
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g---~ 91 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG---R 91 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS---C
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC---E
Confidence 3456799999999999999999999999999887542 24799999999999999999999 988854 6
Q ss_pred eEEEEeecCCc
Q 026793 88 KLHLSYSRHTD 98 (233)
Q Consensus 88 ~LrI~fSk~~~ 98 (233)
.|+|+|++.+.
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999988654
No 45
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8e-16 Score=112.74 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=67.4
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
+..-+|||.||++.+|+++|+++|++||.|++|.|. .++|||+|++.++|++|++.|||..|.+ ++|+|++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHG---VNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSS---CBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCC---cEEEEEECC
Confidence 345567899999999999999999999999999887 2489999999999999999999999865 589999987
Q ss_pred CCc
Q 026793 96 HTD 98 (233)
Q Consensus 96 ~~~ 98 (233)
...
T Consensus 79 ~~~ 81 (90)
T 2dnq_A 79 NKS 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=5e-16 Score=115.09 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=67.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
.|+|.||++.+|+++|.++|++||.|++|.|..+.. .++|||+|++.++|++|++.|||..|.+ +.|+|+|++
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~ 80 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS---RFLKCGYSS 80 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECS
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEEcC
Confidence 456999999999999999999999999998875432 4799999999999999999999999865 699999998
Q ss_pred CCcc
Q 026793 96 HTDL 99 (233)
Q Consensus 96 ~~~L 99 (233)
....
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7653
No 47
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.4e-16 Score=119.01 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=68.6
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
.-.|||.||++.+|+++|+++|++||.|++|.|..+.+ .++|||+|++.++|++|++.|||..|.+ ++|+|++++
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~ 105 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG---RKIEVNNAT 105 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT---EECEEEECC
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEECC
Confidence 34567999999999999999999999999998875432 4799999999999999999999999864 699999998
Q ss_pred CCc
Q 026793 96 HTD 98 (233)
Q Consensus 96 ~~~ 98 (233)
.+.
T Consensus 106 ~~~ 108 (109)
T 2err_A 106 ARV 108 (109)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 48
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=5.8e-16 Score=118.49 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=66.3
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.--+|||.||++.+|+++|+++|++||.|++|.|..++ ..++|||+|.+.++|++|++.|||..|.+ ++|+|+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~ 115 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT---KRLKVQ 115 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT---EECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEE
Confidence 34567899999999999999999999999999887542 24799999999999999999999999864 699999
Q ss_pred eec
Q 026793 93 YSR 95 (233)
Q Consensus 93 fSk 95 (233)
|+|
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 976
No 49
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.4e-16 Score=115.61 Aligned_cols=77 Identities=14% Similarity=0.268 Sum_probs=67.4
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
.|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|.+.++|++|++.|||..|.+ ++|+|+|++
T Consensus 14 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a~ 90 (102)
T 2cqb_A 14 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIRVNLAK 90 (102)
T ss_dssp CEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT---EEEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEeCC
Confidence 44699999999999999999999999999886542 24799999999999999999999999864 699999988
Q ss_pred CCcc
Q 026793 96 HTDL 99 (233)
Q Consensus 96 ~~~L 99 (233)
..+.
T Consensus 91 ~~~~ 94 (102)
T 2cqb_A 91 PMRI 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 50
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.8e-16 Score=116.00 Aligned_cols=80 Identities=10% Similarity=0.111 Sum_probs=69.2
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.--.|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|.+.++|++|++.|||..|.+ +.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 90 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG---KPIRVN 90 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS---CBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEE
Confidence 34456799999999999999999999999999887643 14699999999999999999999999865 599999
Q ss_pred eecCCcc
Q 026793 93 YSRHTDL 99 (233)
Q Consensus 93 fSk~~~L 99 (233)
+++..+.
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9887654
No 51
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9e-16 Score=114.06 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=66.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-.|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|++.++|++|++ |||..|.+ +.|+|+++
T Consensus 11 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g---~~l~V~~a 86 (99)
T 2dgs_A 11 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG---KKVEVKRA 86 (99)
T ss_dssp CEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS---CBCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC---eEEEEEEC
Confidence 456799999999999999999999999999887543 24799999999999999999 99998865 58999998
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+...
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8654
No 52
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=4.6e-16 Score=115.21 Aligned_cols=76 Identities=25% Similarity=0.376 Sum_probs=66.4
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC-------CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG-------GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~-------~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.+ ++|+|+
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~ 83 (98)
T 2cpf_A 7 GLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG---HKLEVR 83 (98)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT---EECEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC---eEEEEE
Confidence 456999999999999999999999999998864321 3699999999999999999999999864 699999
Q ss_pred eecCCc
Q 026793 93 YSRHTD 98 (233)
Q Consensus 93 fSk~~~ 98 (233)
+++...
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 987653
No 53
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.7e-16 Score=115.13 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=68.6
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEcc---C--CCeeEEEEeCCHHHHHHHHHHh-cCCeecCCccceEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEK---N--GGTQALIQYPDITTAAVAKESL-EGHCIYDGGYCKLH 90 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k---~--~~~~AFVEF~d~esA~~A~~~L-NG~~Iy~gg~~~Lr 90 (233)
....|||.||++.+|+++|+++|++||.|++|.|..+ . ..++|||+|.+.++|++|++.| ||..|.+ +.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g---~~l~ 90 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG---RRLV 90 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS---CBCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC---CEEE
Confidence 3445679999999999999999999999999988765 1 1469999999999999999999 9999865 5999
Q ss_pred EEeecCCc
Q 026793 91 LSYSRHTD 98 (233)
Q Consensus 91 I~fSk~~~ 98 (233)
|+|++.+.
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998764
No 54
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.1e-16 Score=114.55 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=66.6
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
.|||.||++.+|+++|+++|++||.|++|.|.+.+ ++|||+|.+.++|++|++.|||..|.+ ++|+|+|++.+.
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k--g~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~a~~~~ 90 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK--GFGFIRLETRTLAEIAKVELDNMPLRG---KQLRVRFACHSA 90 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT--TEEEEECSSSHHHHHHHHHHTTCCBTT---BCCEEEESSCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC--CEEEEEECCHHHHHHHHHHhCCCEeCC---ceEEEEEcCCCC
Confidence 45699999999999999999999999999987653 499999999999999999999999865 699999998754
No 55
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.7e-16 Score=119.15 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=67.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
-.|||.||++.+|+++|.++|++||.|.+|.|... .++|||+|.+.++|++|++.|||..|.+ +.|+|+|++...
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~~~~ 85 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG--GITAIVEFLEPLEARKAFRHLAYSKFHH---VPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS--SSCEEEEESCHHHHHHHHHHHTTCBSSS---SBCEEEEEETTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCEECC---eEEEEEECCCCc
Confidence 45679999999999999999999999999988653 3489999999999999999999999865 589999998754
Q ss_pred c
Q 026793 99 L 99 (233)
Q Consensus 99 L 99 (233)
+
T Consensus 86 ~ 86 (111)
T 1whx_A 86 F 86 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 56
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=116.79 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=68.1
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
+|+|.||++.+|+++|+++|++||.|++|.|..+ ..++|||+|++.++|++|++.|||..|.+ ++|+|++++...
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a~~~~ 76 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICG---SRVRVELSTGMP 76 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSS---CCCEEEESSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECC---cEEEEEEccCCC
Confidence 5789999999999999999999999999998876 44699999999999999999999999865 589999998765
No 57
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.9e-16 Score=116.40 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=66.2
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
.-+|||.||++.+|+++|+++|++||.|++|.|.+. .++|||+|.+.++|++|++.|||..|.+ ++|+|+|++.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~~ 100 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE--KGCCFIKYDTHEQAAVCIVALANFPFQG---RNLRTGWGKE 100 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHTTCEETT---EECCCCBCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEeccC
Confidence 346789999999999999999999999999998844 3599999999999999999999999864 6899999875
No 58
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-15 Score=114.69 Aligned_cols=76 Identities=21% Similarity=0.351 Sum_probs=66.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
-+|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|++.++|++|++.|||..|.+ ++|+|++++
T Consensus 16 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~ 92 (114)
T 2do0_A 16 STVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD---RPMHVKMDE 92 (114)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC---CEEEEEEcc
Confidence 3456999999999999999999999999998875433 3699999999999999999999999964 689999976
Q ss_pred CC
Q 026793 96 HT 97 (233)
Q Consensus 96 ~~ 97 (233)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 59
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.5e-16 Score=122.64 Aligned_cols=79 Identities=10% Similarity=0.144 Sum_probs=66.2
Q ss_pred CCCCceEEEEEeCCCCC-CCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCe--ecCCccceE
Q 026793 13 ELESNVLLASIENMQYA-VTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHC--IYDGGYCKL 89 (233)
Q Consensus 13 ~~pS~VLlV~V~NL~y~-VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~--Iy~gg~~~L 89 (233)
..++++ |||.||++. +|+++|.++|++||+|.+|.|.+.+ ++|||||+|.++|++|++.||+.. |.+ ++|
T Consensus 22 ~~p~~~--l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~l~G---r~l 94 (112)
T 1x4f_A 22 QELGRV--IHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK--SQAFIEMETREDAMAMVDHCLKKALWFQG---RCV 94 (112)
T ss_dssp SCCCCE--EEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT--TEEEEECSSHHHHHHHHHHHHHSCCCSSS---SCC
T ss_pred CCCCCE--EEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC--CEEEEEECCHHHHHHHHHHhccCCceECC---EEE
Confidence 334555 469999998 9999999999999999999997643 599999999999999999997654 544 699
Q ss_pred EEEeecCCc
Q 026793 90 HLSYSRHTD 98 (233)
Q Consensus 90 rI~fSk~~~ 98 (233)
+|+||+...
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999997643
No 60
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=114.46 Aligned_cols=77 Identities=13% Similarity=0.251 Sum_probs=67.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
--.|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.+ ++|+|+|
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~ 99 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG---QPISVDW 99 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS---SBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC---cEEEEEe
Confidence 35678999999999999999999999999998865432 3799999999999999999999998865 5899999
Q ss_pred ecCC
Q 026793 94 SRHT 97 (233)
Q Consensus 94 Sk~~ 97 (233)
++.+
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 61
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.64 E-value=7.5e-16 Score=120.96 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=69.2
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
...-+|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.+ ++|+|
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 116 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN---KRLKV 116 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS---CEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEE
Confidence 3345677999999999999999999999999998875432 4699999999999999999999999865 59999
Q ss_pred EeecCCc
Q 026793 92 SYSRHTD 98 (233)
Q Consensus 92 ~fSk~~~ 98 (233)
++++...
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9988653
No 62
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=118.79 Aligned_cols=79 Identities=15% Similarity=0.258 Sum_probs=65.9
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCc--eEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCe---ecCCcc
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGT--VQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHC---IYDGGY 86 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~--V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~---Iy~gg~ 86 (233)
..+-+|||.||++.+|+++|+++|++||. |.+|.|.+++ .+++|||+|.+.++|++|++.|||.. ..+|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G-- 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG-- 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT--
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC--
Confidence 34567889999999999999999999995 5678776532 24799999999999999999999974 2244
Q ss_pred ceEEEEeecC
Q 026793 87 CKLHLSYSRH 96 (233)
Q Consensus 87 ~~LrI~fSk~ 96 (233)
++|+|+|||.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 7999999985
No 63
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=1.1e-15 Score=129.46 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=69.6
Q ss_pred CCceEEEEEeCCC-CCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 15 ESNVLLASIENMQ-YAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 15 pS~VLlV~V~NL~-y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
++++ |||.||+ +.+|+++|+++|++||.|++|+|..++ .++|||+|+|.++|+.|++.|||..|++ +.|+|.|
T Consensus 3 ~~~~--l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-~g~afV~f~~~~~A~~Ai~~lng~~~~g---~~l~v~~ 76 (205)
T 3tyt_A 3 DSPV--LMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-PGAAMVEMADGYAVDRAITHLNNNFMFG---QKMNVCV 76 (205)
T ss_dssp CCSE--EEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-TTCEEEEESSHHHHHHHHHHHTTCEETT---EECEEEE
T ss_pred CCCE--EEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-CCEEEEEECCHHHHHHHHHHhCCCEECC---ceEEEEE
Confidence 3444 4699999 899999999999999999999987654 3689999999999999999999999976 5999999
Q ss_pred ecCCcc
Q 026793 94 SRHTDL 99 (233)
Q Consensus 94 Sk~~~L 99 (233)
|+...+
T Consensus 77 s~~~~~ 82 (205)
T 3tyt_A 77 SKQPAI 82 (205)
T ss_dssp CSCSCC
T ss_pred ccCCcc
Confidence 987654
No 64
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=8.9e-16 Score=114.31 Aligned_cols=78 Identities=14% Similarity=0.309 Sum_probs=67.1
Q ss_pred CCceEEEEEeCCCCCCCHHHHHHhhccCCceEE--------EEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeec
Q 026793 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTVQK--------VAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIY 82 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~k--------I~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy 82 (233)
+...-.|+|+||++.+|+++|+++|++||.|++ |.|..++. .++|||+|.+.++|++|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 334556789999999999999999999999999 87765432 379999999999999999999999986
Q ss_pred CCccceEEEEeec
Q 026793 83 DGGYCKLHLSYSR 95 (233)
Q Consensus 83 ~gg~~~LrI~fSk 95 (233)
+ ++|+|++|+
T Consensus 90 g---~~l~V~~A~ 99 (99)
T 2la6_A 90 G---NPIKVSFAT 99 (99)
T ss_dssp S---SBCEEEECC
T ss_pred C---cEEEEEecC
Confidence 5 589999975
No 65
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.9e-16 Score=118.42 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=67.3
Q ss_pred EEEEeCCCCCCCHHHHH---HhhccCCceEEEEEEccCC-------CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceE
Q 026793 20 LASIENMQYAVTVDVLN---TVFSAFGTVQKVAIFEKNG-------GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKL 89 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~---~iFS~yG~V~kI~If~k~~-------~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~L 89 (233)
+|||.||++.+|+++|. ++|++||.|++|.|..+.. .++|||+|++.++|++|++.|||..|.+ ++|
T Consensus 17 ~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g---r~l 93 (111)
T 2cpi_A 17 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG---RTL 93 (111)
T ss_dssp CEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT---EEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC---EEE
Confidence 45799999999999999 9999999999998875432 3799999999999999999999999864 699
Q ss_pred EEEeecCCc
Q 026793 90 HLSYSRHTD 98 (233)
Q Consensus 90 rI~fSk~~~ 98 (233)
+|+|++.+.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999988764
No 66
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=116.07 Aligned_cols=76 Identities=16% Similarity=0.290 Sum_probs=68.3
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
.-+|||.||++.+|+++|+++|++||.|++|.|..+ .++|||+|.+.++|++|++.|||..|.+ +.|+|+|++.+
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~~~ 99 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG---HVVKCYWGKES 99 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT---EECEEECCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC---cEEEEEecCCC
Confidence 446789999999999999999999999999999876 3599999999999999999999999864 69999998876
Q ss_pred c
Q 026793 98 D 98 (233)
Q Consensus 98 ~ 98 (233)
.
T Consensus 100 ~ 100 (109)
T 1x4g_A 100 P 100 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 67
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=1.1e-15 Score=111.72 Aligned_cols=77 Identities=17% Similarity=0.252 Sum_probs=67.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
-+|+|.||++.+|+++|+++|++||.|++|.|..+.+ .++|||+|.+.++|++|++.|||..|.+ +.|+|++++.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~a~~ 85 (92)
T 2dgv_A 9 CQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG---REIDVRIDRN 85 (92)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT---BCCCCEECSC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEcCC
Confidence 3567999999999999999999999999998876443 4799999999999999999999999854 5899999876
Q ss_pred Cc
Q 026793 97 TD 98 (233)
Q Consensus 97 ~~ 98 (233)
..
T Consensus 86 ~~ 87 (92)
T 2dgv_A 86 AS 87 (92)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 68
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.2e-16 Score=114.35 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=65.1
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
-.|||.||++.+|+++|+++|++||.|. +.+...+..++|||+|.+.++|++|++.|||..|.+ ++|+|++++.+
T Consensus 20 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a~~~ 94 (97)
T 2e5j_A 20 ADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT---DTLRVALARQQ 94 (97)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS---SCCEEEECCCC
T ss_pred CEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEcCCC
Confidence 4677999999999999999999999996 555444445699999999999999999999999865 58999998765
No 69
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=2.9e-15 Score=115.96 Aligned_cols=83 Identities=14% Similarity=0.136 Sum_probs=71.5
Q ss_pred CCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC---CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 14 LESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN---GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~---~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
....--+|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|++.++|++|++.|||..|.+ +.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG---RPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS---CEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC---cEEE
Confidence 34455678899999999999999999999999999887643 24699999999999999999999998854 6999
Q ss_pred EEeecCCcc
Q 026793 91 LSYSRHTDL 99 (233)
Q Consensus 91 I~fSk~~~L 99 (233)
|++|+...+
T Consensus 108 V~~a~~~~~ 116 (124)
T 2kt5_A 108 IQLVASQID 116 (124)
T ss_dssp EEEECCTTC
T ss_pred EEEeCCCCC
Confidence 999987544
No 70
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.63 E-value=2.4e-16 Score=117.29 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=63.1
Q ss_pred EEEeCCCCCCCHHHHHHhhccCC-ceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFG-TVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG-~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
|+|.||++.+|+++|.++|++|| .|++|.|..+. ..++|||+|.+.++|++|++.|++....+| ++|+|+||+
T Consensus 4 i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g--r~i~V~~a~ 81 (91)
T 2lxi_A 4 VMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG--QKVSMHYSD 81 (91)
T ss_dssp EEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT--EEEEEECCC
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC--EEEEEEEcC
Confidence 56999999999999999999999 89999876532 247999999999999999998865433344 799999997
Q ss_pred CC
Q 026793 96 HT 97 (233)
Q Consensus 96 ~~ 97 (233)
.+
T Consensus 82 ~~ 83 (91)
T 2lxi_A 82 PK 83 (91)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 71
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.4e-16 Score=113.16 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=67.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEE-EEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKV-AIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI-~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
-+|||.||++.+|+++|.++|++||.|++| .|..+. ..++|||+|++.++|++|++.|||..|.+ ++|+|+|
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~ 82 (96)
T 1x5t_A 6 SGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN---RPITVSY 82 (96)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT---EECEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEE
Confidence 356799999999999999999999999999 776542 14699999999999999999999999864 6999999
Q ss_pred ecCCc
Q 026793 94 SRHTD 98 (233)
Q Consensus 94 Sk~~~ 98 (233)
++...
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 87754
No 72
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1e-15 Score=112.20 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=64.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
-.|||.||++.+|+++|+++|++||.|++|.|.+. +|||+|.+.++|++|++.|||..|.+ ++|+|++++..
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~~~ 81 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKG---KRINVELSTKG 81 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETT---EECEEEESCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEECCCC
Confidence 34569999999999999999999999999988733 89999999999999999999999864 69999998765
No 73
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=6.5e-16 Score=120.75 Aligned_cols=80 Identities=8% Similarity=0.068 Sum_probs=70.0
Q ss_pred CCceEEEEEeCCCCCCCHHHHHHhhccCC-ceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 15 ESNVLLASIENMQYAVTVDVLNTVFSAFG-TVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~~iFS~yG-~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
+.+-..|+|.||++.+|+++|.++|++|| .|..+.|..++..++|||+|++.++|++|++.|||..|.+ +.|+|++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G---r~i~V~~ 101 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG---SVITVER 101 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT---EEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEE
Confidence 44556789999999999999999999999 9999988755556799999999999999999999999865 6999999
Q ss_pred ecCC
Q 026793 94 SRHT 97 (233)
Q Consensus 94 Sk~~ 97 (233)
++..
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 74
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=115.49 Aligned_cols=79 Identities=25% Similarity=0.354 Sum_probs=67.7
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceE--------EEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQ--------KVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~--------kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
.--+|||.||++.+|+++|.++|++||.|+ +|.|+.+.. .++|||+|.+.++|++|++.|||..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g- 92 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG- 92 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT-
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC-
Confidence 344567999999999999999999999999 687765421 4699999999999999999999999864
Q ss_pred ccceEEEEeecCCc
Q 026793 85 GYCKLHLSYSRHTD 98 (233)
Q Consensus 85 g~~~LrI~fSk~~~ 98 (233)
++|+|++++...
T Consensus 93 --~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 --SKLKVSLARKKP 104 (113)
T ss_dssp --EECEEECSSCCC
T ss_pred --CEEEEEECCCCC
Confidence 699999987653
No 75
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=3.3e-15 Score=111.98 Aligned_cols=87 Identities=13% Similarity=0.288 Sum_probs=71.5
Q ss_pred CCCCCCCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCee
Q 026793 6 GPDGKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCI 81 (233)
Q Consensus 6 g~~g~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~I 81 (233)
|.+++ ..+...-..|||.||++.+|+++|.++|++|| |++|.|..+.. .++|||+|++.++|++|+ .|||..|
T Consensus 4 g~~~~-~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 80 (103)
T 2dng_A 4 GSSGK-ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL 80 (103)
T ss_dssp CCCCC-CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCC-CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE
Confidence 44554 33344567788999999999999999999997 99998875432 369999999999999999 8999998
Q ss_pred cCCccceEEEEeecCCc
Q 026793 82 YDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 82 y~gg~~~LrI~fSk~~~ 98 (233)
.+ +.|+|++++...
T Consensus 81 ~g---~~l~V~~a~~~~ 94 (103)
T 2dng_A 81 GD---RSLRVDIAEGRK 94 (103)
T ss_dssp TT---EECEEEECCCCC
T ss_pred CC---eEEEEEEecCCC
Confidence 64 699999987653
No 76
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=9.9e-16 Score=113.60 Aligned_cols=76 Identities=13% Similarity=0.310 Sum_probs=66.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceE-EEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccce----EE
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQ-KVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCK----LH 90 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~-kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~----Lr 90 (233)
+|||.||++.+|+++|+++|++||.|+ +|.|..+. . .++|||+|.+.++|++|++.|||..|.+. . |+
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~~~~~l~ 87 (99)
T 2div_A 11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA---TPAKRFK 87 (99)
T ss_dssp EEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC---SSCEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC---CcceeEE
Confidence 456999999999999999999999999 99886543 2 37999999999999999999999998664 5 99
Q ss_pred EEeecCCc
Q 026793 91 LSYSRHTD 98 (233)
Q Consensus 91 I~fSk~~~ 98 (233)
|+|++...
T Consensus 88 v~~a~~~~ 95 (99)
T 2div_A 88 LNYATYSG 95 (99)
T ss_dssp EEETTCCS
T ss_pred EeecCCCC
Confidence 99987654
No 77
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=112.85 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=68.6
Q ss_pred CCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC-----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccce
Q 026793 14 LESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG-----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCK 88 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~-----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~ 88 (233)
+...-..|||.||++.+|+++|.++|+.|| |++|.|..+.. .++|||+|.+.++|++|+ .|||..|.+ +.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~ 85 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---KR 85 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT---EE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC---cE
Confidence 344567889999999999999999999999 99998865321 469999999999999999 999999854 69
Q ss_pred EEEEeecCCc
Q 026793 89 LHLSYSRHTD 98 (233)
Q Consensus 89 LrI~fSk~~~ 98 (233)
|+|++++.+.
T Consensus 86 l~V~~a~~~~ 95 (104)
T 1wi8_A 86 IRVDVADQAQ 95 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999987753
No 78
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=1.3e-15 Score=116.88 Aligned_cols=75 Identities=23% Similarity=0.378 Sum_probs=66.9
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
.--.|||.||++.+|+++|+++|++||.|++|.|. .++|||+|.+.++|++|++.|||..|.+ +.|+|+|++.
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~~ 102 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN---QPLEVVYSKL 102 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT---EECEEESCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEecC
Confidence 34456799999999999999999999999999887 3599999999999999999999999854 6999999887
Q ss_pred Cc
Q 026793 97 TD 98 (233)
Q Consensus 97 ~~ 98 (233)
..
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 79
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=121.91 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=66.5
Q ss_pred EEEEeCCCCCCCHHHHH----HhhccCCceEEEEEEcc-CCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 20 LASIENMQYAVTVDVLN----TVFSAFGTVQKVAIFEK-NGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~----~iFS~yG~V~kI~If~k-~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
+|||.||++.+|+++|. ++|++||.|++|.+... +..++|||+|++.++|+.|++.|||..|.+ +.|+|+||
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g---r~l~V~~a 107 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG---NPLVITFS 107 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT---SCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC---CEEEEEEc
Confidence 46799999999998865 79999999999988642 235799999999999999999999999976 59999999
Q ss_pred cCCcc
Q 026793 95 RHTDL 99 (233)
Q Consensus 95 k~~~L 99 (233)
+.+.-
T Consensus 108 ~~~~~ 112 (127)
T 2a3j_A 108 ETPQS 112 (127)
T ss_dssp CCCCH
T ss_pred cCcch
Confidence 87653
No 80
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.61 E-value=5.7e-16 Score=113.99 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=62.8
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCC--ceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFG--TVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG--~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
..|||+||++.+|+++|+++|++|| .|++|.|..+. . .++|||+|++.++|++|++.|||..|.+ ++|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g---r~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG---QNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS---CCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC---EEEEEE
Confidence 3689999999999999999999999 99999876542 2 3799999999999999999999999865 589999
Q ss_pred eecCC
Q 026793 93 YSRHT 97 (233)
Q Consensus 93 fSk~~ 97 (233)
+++..
T Consensus 79 ~~~~~ 83 (90)
T 3p5t_L 79 PSNKL 83 (90)
T ss_dssp CC---
T ss_pred ECCCC
Confidence 88754
No 81
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=1.4e-15 Score=120.44 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=67.3
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-.|||.||++.+|+++|.++|++||.|++|.|..+. ..++|||+|++.++|++|++.|||..|.+ ++|+|+|+
T Consensus 47 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g---~~l~V~~a 123 (129)
T 2kxn_B 47 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG---RRIRVDFS 123 (129)
T ss_dssp SCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS---SCCEESCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEEEe
Confidence 345699999999999999999999999999887542 24799999999999999999999999865 59999998
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+.++
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 7653
No 82
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=117.03 Aligned_cols=78 Identities=14% Similarity=0.233 Sum_probs=66.6
Q ss_pred CCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceE
Q 026793 14 LESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKL 89 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~L 89 (233)
....--.|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|++.++|++|++.|||..|.+ ++|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 135 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTI 135 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT---EEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC---EEE
Confidence 33445567799999999999999999999999999886542 24799999999999999999999999864 699
Q ss_pred EEEee
Q 026793 90 HLSYS 94 (233)
Q Consensus 90 rI~fS 94 (233)
+|+||
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99885
No 83
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=2.9e-15 Score=116.00 Aligned_cols=78 Identities=14% Similarity=0.260 Sum_probs=68.8
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
-.|||.||++.+|+++|.++|++||.|++|.|..+.. .++|||+|++.++|++|++.|||..|.+ +.|+|++++
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~ 84 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG---KAIKVEQAK 84 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS---SBCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEEECC
Confidence 4577999999999999999999999999998876442 3799999999999999999999999865 599999998
Q ss_pred CCcc
Q 026793 96 HTDL 99 (233)
Q Consensus 96 ~~~L 99 (233)
....
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6653
No 84
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=4.1e-15 Score=113.80 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=68.7
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
..--+|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.+ ++|+|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g---~~l~V 100 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG---RPMKV 100 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS---SCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEE
Confidence 3445778999999999999999999999999998875422 3699999999999999999999999865 58999
Q ss_pred EeecCC
Q 026793 92 SYSRHT 97 (233)
Q Consensus 92 ~fSk~~ 97 (233)
++++.+
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998764
No 85
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=2.7e-15 Score=112.62 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=64.6
Q ss_pred EEEEEeCCCC-CCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 19 LLASIENMQY-AVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 19 LlV~V~NL~y-~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
-+|||.||++ .+|+++|+++|++||.|++|.|. .++|||+|++.++|++|++.|||..|.+ ++|+|+|++..
T Consensus 23 ~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~~~ 95 (97)
T 2xnq_A 23 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG---KKLILEVSSSN 95 (97)
T ss_dssp CEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT---EECEEEECCCC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEecCCC
Confidence 3567999998 99999999999999999999883 3599999999999999999999999864 69999998764
No 86
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.2e-15 Score=112.10 Aligned_cols=74 Identities=22% Similarity=0.242 Sum_probs=66.0
Q ss_pred eEEEEEeCCCC-CCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 18 VLLASIENMQY-AVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 18 VLlV~V~NL~y-~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
.-+|||.||++ .+|+++|+++|++||.|++|.|. .++|||+|++.++|++|++.|||..|.+ ++|+|++++.
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a~~ 82 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFG---KKLILEVSSS 82 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBT---TTBCEEEEEC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCC---cEEEEEEcCc
Confidence 34567999998 99999999999999999999885 3589999999999999999999999875 5899999977
Q ss_pred Cc
Q 026793 97 TD 98 (233)
Q Consensus 97 ~~ 98 (233)
..
T Consensus 83 ~~ 84 (96)
T 2kvi_A 83 NA 84 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 87
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=3.3e-15 Score=108.26 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=65.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
+|+|.||++.+|+++|+++|++||.|.+|.|..+. ..++|||+|.+.++|++|+ .|||..|.+ +.|+|++++
T Consensus 8 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g---~~l~V~~a~ 83 (89)
T 3ucg_A 8 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG---RQIKVIPKR 83 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT---EECEEEETT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC---cEEEEEEcc
Confidence 56799999999999999999999999999886542 2479999999999999999 999999854 699999987
Q ss_pred CC
Q 026793 96 HT 97 (233)
Q Consensus 96 ~~ 97 (233)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 88
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=9.3e-16 Score=113.11 Aligned_cols=77 Identities=22% Similarity=0.423 Sum_probs=66.9
Q ss_pred EEEEeCCCCCCCHHHHH----HhhccCCceEEEEEEcc-CCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 20 LASIENMQYAVTVDVLN----TVFSAFGTVQKVAIFEK-NGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~----~iFS~yG~V~kI~If~k-~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
.|+|.||++.+|+++|. ++|++||.|++|.|.+. ...++|||+|.+.++|++|++.|||..|.+ +.|+|+|+
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a 86 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD---KPMRIQYA 86 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT---EECEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC---cEEEEEEc
Confidence 45699999999999999 99999999999988642 123689999999999999999999999954 69999999
Q ss_pred cCCcc
Q 026793 95 RHTDL 99 (233)
Q Consensus 95 k~~~L 99 (233)
+...-
T Consensus 87 ~~~~~ 91 (97)
T 1nu4_A 87 KTDSD 91 (97)
T ss_dssp SSCCT
T ss_pred cCCCc
Confidence 87653
No 89
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=4e-15 Score=112.46 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=67.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
--.|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.+ +.|+|+|
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~ 102 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG---QTIQVDW 102 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC---cEEEEEE
Confidence 35677999999999999999999999999998865421 4799999999999999999999999854 6999999
Q ss_pred ecCC
Q 026793 94 SRHT 97 (233)
Q Consensus 94 Sk~~ 97 (233)
++.+
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8764
No 90
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=2.5e-15 Score=116.12 Aligned_cols=78 Identities=13% Similarity=0.247 Sum_probs=67.9
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
.-.|||.||++.+|+++|.++|++||.|++|.|..+. . .++|||+|.+.++|++|++.|||..|.+ +.|+|+|
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~ 98 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG---QPISVDW 98 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS---SBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC---eEEEEEE
Confidence 4467899999999999999999999999999886542 1 4699999999999999999999999865 5899999
Q ss_pred ecCCc
Q 026793 94 SRHTD 98 (233)
Q Consensus 94 Sk~~~ 98 (233)
++...
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 87654
No 91
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=4.6e-15 Score=119.01 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=67.7
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
.-+|||.||++.+|+++|.++|++||.|++|.|..+.. .++|||+|++.++|++|++.|||..|.+ ++|+|+|
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~ 115 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD---RIIRTDW 115 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT---EECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEE
Confidence 44667999999999999999999999999998865432 3699999999999999999999999954 6999999
Q ss_pred ecCC
Q 026793 94 SRHT 97 (233)
Q Consensus 94 Sk~~ 97 (233)
++..
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 9764
No 92
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=112.26 Aligned_cols=88 Identities=19% Similarity=0.235 Sum_probs=67.8
Q ss_pred CCCCCCCCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEE-ccCCCeeEEEEeCCHHHHHHHHHHhcCCeecC
Q 026793 5 IGPDGKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIF-EKNGGTQALIQYPDITTAAVAKESLEGHCIYD 83 (233)
Q Consensus 5 ~g~~g~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If-~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~ 83 (233)
.|..|+.. ....--.|||.||++.+|+++|+++|++||.| +|... .....++|||+|.+.++|++|++.|||..|.+
T Consensus 3 s~~s~~~~-~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v-~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 80 (101)
T 2fc9_A 3 SGSSGNST-WSGESKTLVLSNLSYSATEETLQEVFEKATFI-KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG 80 (101)
T ss_dssp SSCCCCCC-CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE-ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT
T ss_pred CCCCCCcc-CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE-EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34555533 23334556799999999999999999999988 22211 11224799999999999999999999999864
Q ss_pred CccceEEEEeecCC
Q 026793 84 GGYCKLHLSYSRHT 97 (233)
Q Consensus 84 gg~~~LrI~fSk~~ 97 (233)
+.|+|+|++..
T Consensus 81 ---~~l~v~~a~~~ 91 (101)
T 2fc9_A 81 ---RAIRLELQGPR 91 (101)
T ss_dssp ---EEEEEEECSSC
T ss_pred ---eEEEEEEcCCC
Confidence 69999998775
No 93
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.60 E-value=1.4e-15 Score=111.69 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=64.0
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEcc-CC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEK-NG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k-~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-+|+|.||++.+|+++|.++|++||.|+++.+..+ .. .++|||+|.+.++|++|++.|||..|.+ ++|+|+++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---r~l~v~~a 92 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS---RKVKLSGP 92 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC---cEEEEEec
Confidence 56789999999999999999999999987755432 22 3799999999999999999999999854 69999987
Q ss_pred cC
Q 026793 95 RH 96 (233)
Q Consensus 95 k~ 96 (233)
+.
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 94
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=112.68 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=67.4
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhcc-CCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCe-ecCCccceEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSA-FGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHC-IYDGGYCKLHL 91 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~-yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~-Iy~gg~~~LrI 91 (233)
.-.+|||.||++.+|+++|+++|++ ||.|++|.|..+.. .++|||+|.+.++|++|++.|||.. |.+ +.|+|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g---~~l~v 84 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS---KPVRL 84 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS---SCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC---EeEEE
Confidence 3445679999999999999999999 99999998875432 3699999999999999999999999 754 58999
Q ss_pred EeecCCc
Q 026793 92 SYSRHTD 98 (233)
Q Consensus 92 ~fSk~~~ 98 (233)
++++...
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9986543
No 95
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=3.2e-15 Score=113.81 Aligned_cols=76 Identities=21% Similarity=0.384 Sum_probs=67.1
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
+|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|.+.++|++|++.|||..|.+ +.|+|+|++...
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a~~~~ 86 (115)
T 3lqv_A 10 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN---RYLVVLYYNANR 86 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS---CBCEEEECCHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEecCCh
Confidence 56799999999999999999999999999887533 35799999999999999999999999864 589999987543
No 96
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=111.22 Aligned_cols=78 Identities=15% Similarity=0.254 Sum_probs=65.6
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEcc-CC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEK-NG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k-~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.--.|+|.||++.+|+++|.++|++||.|+++.+..+ .. .++|||+|.+.++|++|++.|||..|.+ ++|+|+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V~ 90 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS---RKVKLV 90 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC---eEEEEE
Confidence 3456789999999999999999999999986654432 22 3799999999999999999999999864 699999
Q ss_pred eecCC
Q 026793 93 YSRHT 97 (233)
Q Consensus 93 fSk~~ 97 (233)
+++..
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 97
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.6e-15 Score=109.57 Aligned_cols=75 Identities=16% Similarity=0.381 Sum_probs=66.2
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccC--CceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAF--GTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~y--G~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
+..+|||.||++.+|+++|+++|++| |.|++|.+.+ ++|||+|.+.++|++|++.|||..|.+ ++|+|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a 86 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLDG---SPIEVTLA 86 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEETT---EEEEEECC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeCC---cEEEEEEC
Confidence 34566799999999999999999999 9999988752 489999999999999999999999854 69999998
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+...
T Consensus 87 ~~~~ 90 (99)
T 2cpd_A 87 KPVD 90 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 98
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=112.19 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=67.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
+|||.||++.+|+++|+++|++||.|++|.|..+. . .++|||+|.+.++|++|++.|||..|.+ +.|+|+|++
T Consensus 10 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~ 86 (104)
T 1p1t_A 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG---RALRVDNAA 86 (104)
T ss_dssp CEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS---SCBEEEETT
T ss_pred EEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEEeCC
Confidence 56799999999999999999999999999887543 2 3799999999999999999999999865 589999987
Q ss_pred CCc
Q 026793 96 HTD 98 (233)
Q Consensus 96 ~~~ 98 (233)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 99
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.7e-15 Score=113.60 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=66.1
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
.+|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|.+.++|++|+ .|||..|.+ +.|+|+++
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V~~a 101 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG---VPIIVQAS 101 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT---EEEEEEEH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC---eEEEEEec
Confidence 367899999999999999999999999999887533 2469999999999999999 999999854 69999998
Q ss_pred cCC
Q 026793 95 RHT 97 (233)
Q Consensus 95 k~~ 97 (233)
+..
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 754
No 100
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=1.9e-15 Score=116.64 Aligned_cols=65 Identities=8% Similarity=0.085 Sum_probs=58.4
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
..-.|||.||++.+|+++|.++|++||+|++|.|..+ ++|||+|++.++|++|++.|||..|.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3456789999999999999999999999999998766 5999999999999999999999998663
No 101
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=114.75 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=66.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCce----EEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTV----QKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V----~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-.|||.||++.+|+++|+++|++||.| ..+.+......++|||+|.+.++|++|++.|||..|.+ +.|+|+|+
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~v~~a 102 (115)
T 2cpx_A 26 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG---KILVIEFG 102 (115)
T ss_dssp SEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS---CBCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC---cEEEEEEc
Confidence 456799999999999999999999999 55555544445799999999999999999999999854 59999999
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+...
T Consensus 103 ~~~~ 106 (115)
T 2cpx_A 103 KNKK 106 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8754
No 102
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=113.06 Aligned_cols=86 Identities=13% Similarity=0.219 Sum_probs=71.0
Q ss_pred CCCCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 9 GKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 9 g~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
+...........|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|++.++|++|++. ||..|.+
T Consensus 7 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g- 84 (105)
T 2dh8_A 7 GMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG- 84 (105)
T ss_dssp CCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT-
T ss_pred CCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC-
Confidence 33334444556678999999999999999999999999998876432 36999999999999999999 9998865
Q ss_pred ccceEEEEeecCCc
Q 026793 85 GYCKLHLSYSRHTD 98 (233)
Q Consensus 85 g~~~LrI~fSk~~~ 98 (233)
++|+|++++.+.
T Consensus 85 --~~l~V~~a~~~~ 96 (105)
T 2dh8_A 85 --RNIDPKPCTPRG 96 (105)
T ss_dssp --EEEBCCCSCCSS
T ss_pred --EEEEEEEccCCC
Confidence 689999987654
No 103
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.59 E-value=1.4e-15 Score=114.52 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=66.2
Q ss_pred EEEEeCCCC------CCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceE
Q 026793 20 LASIENMQY------AVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKL 89 (233)
Q Consensus 20 lV~V~NL~y------~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~L 89 (233)
+|||.||++ .+|+++|.++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.++ +.|
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~--r~l 85 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK--HRL 85 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS--CBC
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC--eEE
Confidence 467999999 999999999999999999998764332 47999999999999999999999999763 589
Q ss_pred EEEeecCC
Q 026793 90 HLSYSRHT 97 (233)
Q Consensus 90 rI~fSk~~ 97 (233)
+|.+++..
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99998653
No 104
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.59 E-value=3.8e-15 Score=118.77 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=68.9
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
...-+|||.||++.+|+++|+++|++||.|++|.|..+. .++|||+|.+.++|++|++.|||..|.+ ++|+|+|++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~ 146 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP-PGFAFVEFEDPRDAADAVRELDGRTLCG---CRVRVELSN 146 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSS-CSEEEEEESSHHHHHHHHHHHSSSCSSS---SCCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCC-CcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEcC
Confidence 344567899999999999999999999999999997763 4699999999999999999999999854 699999987
Q ss_pred CC
Q 026793 96 HT 97 (233)
Q Consensus 96 ~~ 97 (233)
.+
T Consensus 147 ~~ 148 (150)
T 2i2y_A 147 GE 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 105
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-14 Score=111.16 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=66.1
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
..-+|||.||++.+|+++|.++|++||.|++|.|..++ ..++|||+|.+.++|++|++.||+ .|. + +.|+|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~-g--~~l~V~ 91 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID-G--RKANVN 91 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET-T--EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC-C--EEEEEE
Confidence 34456799999999999999999999999999887643 246999999999999999999998 664 4 699999
Q ss_pred eecCC
Q 026793 93 YSRHT 97 (233)
Q Consensus 93 fSk~~ 97 (233)
+++..
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 98764
No 106
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-14 Score=107.98 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=63.8
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
-+|||.|+ .+|+++|+++|++||.|++|.|... .++|||+|++.++|++|++.|||..|.+ ++|+|+|++...
T Consensus 16 ~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~v~~a~~~~ 88 (97)
T 1x5p_A 16 NTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP--RNCAFVTYEKMESADQAVAELNGTQVES---VQLKVNIARKQP 88 (97)
T ss_dssp SEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHTTTEEETT---EEEEEECCSSCC
T ss_pred CEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC--CCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEECCCCC
Confidence 35679995 8999999999999999999988533 3589999999999999999999999854 699999998754
No 107
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=2.5e-15 Score=114.12 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=65.3
Q ss_pred EEEEEeCCCCC-CCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 19 LLASIENMQYA-VTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 19 LlV~V~NL~y~-VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
-+|||.||++. +|+++|+++|++||.|++|.| . .++|||+|++.++|++|++.|||..|.+ +.|+|+|++..
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~--~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a~~~ 100 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--H--KGYAFVQYSNERHARAAVLGENGRVLAG---QTLDINMAGEP 100 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--E--TTEEEEECSSSHHHHHHHHHHTTCEETT---EECCEEESCCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--e--CCEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEECCCC
Confidence 46789999999 999999999999999999988 2 3589999999999999999999999864 69999998754
Q ss_pred c
Q 026793 98 D 98 (233)
Q Consensus 98 ~ 98 (233)
+
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 108
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.7e-15 Score=118.79 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=66.8
Q ss_pred CCCCceEEEEE--eCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCee---cCCccc
Q 026793 13 ELESNVLLASI--ENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCI---YDGGYC 87 (233)
Q Consensus 13 ~~pS~VLlV~V--~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~I---y~gg~~ 87 (233)
..+++.| || .||.+.+|+++|+++|++||.|++|.|... .++|||+|++.++|++|++.|||++| .+. ..
T Consensus 22 ~~pt~~L--~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~-g~ 96 (114)
T 2cq2_A 22 SYATQSL--VVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ-KI 96 (114)
T ss_dssp SSCCSEE--EEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC-EE
T ss_pred CCCCCEE--EEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCC-Cc
Confidence 4456665 57 779999999999999999999999988653 45999999999999999999999987 222 36
Q ss_pred eEEEEeecCC
Q 026793 88 KLHLSYSRHT 97 (233)
Q Consensus 88 ~LrI~fSk~~ 97 (233)
.|.|.|++..
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 8999998754
No 109
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=8.5e-15 Score=107.20 Aligned_cols=78 Identities=5% Similarity=0.070 Sum_probs=67.0
Q ss_pred CCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
+..-..|+|.||++.+|+++|+++|+.| .|++|.|..+.. .++|||+|++.++|++|++ |||..|.+ +.|+|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g---r~i~v 81 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG---RYIEV 81 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT---EEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC---cEEEE
Confidence 3344567799999999999999999999 999998875432 3699999999999999999 99999865 69999
Q ss_pred EeecCC
Q 026793 92 SYSRHT 97 (233)
Q Consensus 92 ~fSk~~ 97 (233)
.+++.+
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 998765
No 110
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.58 E-value=3.8e-15 Score=112.88 Aligned_cols=75 Identities=16% Similarity=0.272 Sum_probs=65.0
Q ss_pred EEEEeCCCCCC------CHHHHHHhhccCCceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 20 LASIENMQYAV------TVDVLNTVFSAFGTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 20 lV~V~NL~y~V------Ted~L~~iFS~yG~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
+|||.||++.+ |+++|.++|++||.|++|.|.+.++ .++|||+|.+.++|++|++.|||..|.+. ++|+|
T Consensus 17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~--~~l~V 94 (105)
T 2nlw_A 17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ--HTFRV 94 (105)
T ss_dssp EEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT--CEEEE
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC--ceEEE
Confidence 56799999999 7899999999999999998874332 47999999999999999999999998542 38999
Q ss_pred EeecC
Q 026793 92 SYSRH 96 (233)
Q Consensus 92 ~fSk~ 96 (233)
++++.
T Consensus 95 ~~a~~ 99 (105)
T 2nlw_A 95 NLFTD 99 (105)
T ss_dssp ECSCC
T ss_pred EEcch
Confidence 99864
No 111
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=7.1e-15 Score=108.67 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=63.4
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
...|||.||++.+|+++|.++|++||.|++| +.++..+.+|||+|.+.++|++|++ |||..|.+ +.|+|.+++.+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g---~~l~V~~a~~~ 82 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG---HRLRVRPREQK 82 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT---EECCCBCSCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC---EEEEEEECCcC
Confidence 4467799999999999999999999999998 5444332399999999999999999 99999865 58888876544
No 112
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=110.89 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=65.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCc-----cceEE
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGG-----YCKLH 90 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg-----~~~Lr 90 (233)
-.|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.+.. .+.|+
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~ 105 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLL 105 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCcee
Confidence 3567999999999999999999999999998865432 369999999999999999999999985320 25788
Q ss_pred EEeecCC
Q 026793 91 LSYSRHT 97 (233)
Q Consensus 91 I~fSk~~ 97 (233)
|.|++..
T Consensus 106 v~~a~p~ 112 (114)
T 1x5o_A 106 CKFSGPS 112 (114)
T ss_dssp EEECCCS
T ss_pred EEccCCC
Confidence 8887643
No 113
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.58 E-value=7.1e-15 Score=117.43 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=69.7
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
.....|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|.+.++|++|++.|||..|.+ +.|+|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 144 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG---RELRV 144 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS---SEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEE
Confidence 345678899999999999999999999999999887542 24799999999999999999999999854 69999
Q ss_pred EeecCCc
Q 026793 92 SYSRHTD 98 (233)
Q Consensus 92 ~fSk~~~ 98 (233)
+|++..+
T Consensus 145 ~~a~~~~ 151 (158)
T 2kn4_A 145 QMARYGR 151 (158)
T ss_dssp EEECCSS
T ss_pred EECCCCC
Confidence 9998653
No 114
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=6.5e-15 Score=113.51 Aligned_cols=77 Identities=16% Similarity=0.258 Sum_probs=66.8
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
..|||.||++.+|+++|.++|++||.|++|.|..+. ..++|||+|.+.++|++|+ .|||..|.+ +.|+|+++
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V~~a 112 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG---RTIKVLPK 112 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT---EECEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC---eEEEEEEC
Confidence 357899999999999999999999999999886532 2479999999999999999 799999854 69999998
Q ss_pred cCCcc
Q 026793 95 RHTDL 99 (233)
Q Consensus 95 k~~~L 99 (233)
+...-
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 86543
No 115
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-15 Score=110.01 Aligned_cols=73 Identities=12% Similarity=0.076 Sum_probs=62.0
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-.|+|.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.+ +.|+++++
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~~~~~~~ 82 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA---QMAKQSGP 82 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE---ESCCSSCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee---EEEeecCC
Confidence 3567999999999999999999999999998875432 4699999999999999999999998854 45665554
No 116
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.1e-15 Score=109.29 Aligned_cols=74 Identities=27% Similarity=0.296 Sum_probs=62.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCc-eEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcC-CeecCCccceEEEEeecC
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGT-VQKVAIFEKNGGTQALIQYPDITTAAVAKESLEG-HCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~-V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG-~~Iy~gg~~~LrI~fSk~ 96 (233)
-+|||.||++.+|+++|+++|++||. |..+.+. . .++|||+|++.++|++|++.||| ..|.+ ++|+|+|++.
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g---~~l~v~~a~~ 82 (93)
T 2cqh_A 9 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-K--SGYAFVDYPDQNWAIRAIETLSGKVELHG---KIMEVDYSVS 82 (93)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-E--TTEEEECCSCHHHHHHHHHHHTTTCEETT---EECEEEECCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-C--CCEEEEEECCHHHHHHHHHHccCCeeECC---EEEEEEEccC
Confidence 45679999999999999999999999 5555553 3 24899999999999999999999 88854 6999999886
Q ss_pred Cc
Q 026793 97 TD 98 (233)
Q Consensus 97 ~~ 98 (233)
+.
T Consensus 83 ~~ 84 (93)
T 2cqh_A 83 KK 84 (93)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 117
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=1.1e-14 Score=115.11 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=66.8
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-.|+|.||++.+|+++|+++|++||.|++|.+..+.. .++|||+|.+.++|++|++.|||..|.+++.++|+|.||
T Consensus 96 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 96 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 3567999999999999999999999999998876533 368999999999999999999999998752368999987
No 118
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=3.3e-15 Score=112.05 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=64.9
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
..-+|||.||++.+|+++|+++|++|| |++|.|..+. ..++|||+|.+.++|++|+ .|||..|.+ +.|+|
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g---~~l~V 92 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---RRIRV 92 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT---BCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC---eEEEE
Confidence 345678999999999999999999999 9999887543 1479999999999999999 899999854 58999
Q ss_pred EeecCC
Q 026793 92 SYSRHT 97 (233)
Q Consensus 92 ~fSk~~ 97 (233)
++++.+
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998764
No 119
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=5.7e-15 Score=108.88 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=64.0
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
--+|||.||++.+|+++|.++|+.||.|..| .......++|||+|.+.++|++|++.|||..|.+ +.|+|++++.+
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~~~ 91 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG---RSVSLYYTGEK 91 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT---EEEEEEECSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEEcCCC
Confidence 3456799999999999999999999999776 2222234799999999999999999999999854 68999998764
No 120
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=1.7e-15 Score=110.56 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=64.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-+|+|.||++.+|+++|.++|++||.|++|.|..+. ..++|||+|++.+ |++|++.|||..|.+ ++|+|++|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g---~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG---RTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS---SSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC---eEEEEEEc
Confidence 468999999999999999999999999999887543 2579999999999 999999999999865 58999998
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+...
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7654
No 121
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=9.3e-15 Score=112.68 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=70.4
Q ss_pred CCCCCCCCceEEEEEeCCCC-----CCCHHHHHHhhccCCceEEEEEEcc-----CCCeeEEEEeCCHHHHHHHHHHhcC
Q 026793 9 GKKKELESNVLLASIENMQY-----AVTVDVLNTVFSAFGTVQKVAIFEK-----NGGTQALIQYPDITTAAVAKESLEG 78 (233)
Q Consensus 9 g~~~~~pS~VLlV~V~NL~y-----~VTed~L~~iFS~yG~V~kI~If~k-----~~~~~AFVEF~d~esA~~A~~~LNG 78 (233)
|+-...+++||. |.||.. +-++++|+++|++||+|++|.|.++ ...++|||+|++.++|++|++.|||
T Consensus 1 ~~i~~~~s~~l~--l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 1 GAMGKCPTKVVL--LRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp -CGGGSCCSEEE--EESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEE--EEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence 566678899887 889863 2378999999999999999988753 2258999999999999999999999
Q ss_pred CeecCCccceEEEEeecCCcc
Q 026793 79 HCIYDGGYCKLHLSYSRHTDL 99 (233)
Q Consensus 79 ~~Iy~gg~~~LrI~fSk~~~L 99 (233)
+.|.+ +.|+|+|++..+.
T Consensus 79 ~~~~G---r~i~v~~a~~~~f 96 (105)
T 2pe8_A 79 RYFGG---RVVKACFYNLDKF 96 (105)
T ss_dssp CEETT---EECEEEECCHHHH
T ss_pred CEECC---cEEEEEEcCHHHh
Confidence 99854 6999999876543
No 122
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.56 E-value=3.9e-15 Score=105.16 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=62.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
+|+|.||++.+|+++|.++|++||.|.+|.|..+. ..++|||+|++.++|++|++ |||..|.+ ++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g---~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN---KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS---CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC---EEEEEEeC
Confidence 37899999999999999999999999999886543 24799999999999999998 99999865 58888775
No 123
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=111.32 Aligned_cols=77 Identities=9% Similarity=0.200 Sum_probs=67.3
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
.-.|||.||++.+|+++|.++|++||.|++|.|..+.. .++|||+|.+.++|++|++. ||..|.+ +.|+|++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g---~~l~V~~ 102 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG---RVVEPKR 102 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT---EEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC---EEEEEEE
Confidence 35678999999999999999999999999998876432 46999999999999999998 9988854 6999999
Q ss_pred ecCCc
Q 026793 94 SRHTD 98 (233)
Q Consensus 94 Sk~~~ 98 (233)
++.+.
T Consensus 103 a~~~~ 107 (116)
T 1x4b_A 103 AVARE 107 (116)
T ss_dssp CSSCC
T ss_pred CCCCc
Confidence 88764
No 124
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.4e-14 Score=107.04 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=63.9
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
--.|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++ +++.|.+ +.|+|++
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g---~~l~v~~ 89 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG---RWCDCKL 89 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT---EEEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC---eEEEEEe
Confidence 34567999999999999999999999999998865432 3699999999999999999 4666644 6999999
Q ss_pred ecCCc
Q 026793 94 SRHTD 98 (233)
Q Consensus 94 Sk~~~ 98 (233)
++.+.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 87754
No 125
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=1.3e-14 Score=106.35 Aligned_cols=77 Identities=8% Similarity=0.044 Sum_probs=67.1
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
.+|+|.||++.+|+++|+++|++| .|++|.|. +..++|||+|.+.++|++|++.|||..|.+ ++|+|++++.+.
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V~~a~~~~ 79 (88)
T 1wg1_A 6 SGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG---KDLIVQLQPTDA 79 (88)
T ss_dssp CCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT---EEEEEEECCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC---cEEEEEEcCCCc
Confidence 346799999999999999999999 99999885 233599999999999999999999999865 699999998776
Q ss_pred cee
Q 026793 99 LNV 101 (233)
Q Consensus 99 L~V 101 (233)
+..
T Consensus 80 ~~~ 82 (88)
T 1wg1_A 80 LLC 82 (88)
T ss_dssp CCS
T ss_pred eEe
Confidence 543
No 126
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=1.4e-14 Score=117.81 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=67.9
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-+|||.||++.+|+++|+++|++||.|++|.|..+. . .++|||+|.+.++|+.|++.|||..|.+ +.|+|.|+
T Consensus 73 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a 149 (165)
T 1rk8_A 73 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG---QTIQVDWC 149 (165)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEEEe
Confidence 457799999999999999999999999999887542 2 3799999999999999999999999864 69999998
Q ss_pred cCCcc
Q 026793 95 RHTDL 99 (233)
Q Consensus 95 k~~~L 99 (233)
+...-
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 76543
No 127
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.56 E-value=3.5e-15 Score=117.19 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=65.3
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEE--EEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCC----eecCCccc
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQK--VAIFEKN----GGTQALIQYPDITTAAVAKESLEGH----CIYDGGYC 87 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~k--I~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~----~Iy~gg~~ 87 (233)
.-.|||.||++.+|+++|.++|++||.|.. |.|..++ ..++|||+|++. +|++|++.|||. .|.+ +
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g---r 98 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG---K 98 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG---C
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC---E
Confidence 346789999999999999999999999966 7776533 247999999999 999999999999 8765 5
Q ss_pred eEEEEeecCCc
Q 026793 88 KLHLSYSRHTD 98 (233)
Q Consensus 88 ~LrI~fSk~~~ 98 (233)
.|+|+|++..+
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 89999987643
No 128
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.56 E-value=6.7e-15 Score=120.41 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=68.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCC--ceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFG--TVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG--~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
..|||.||++.+|+++|.++|++|| .|++|.|..+. . .++|||+|.+.++|++|++.|||..|.+ +.|+|+
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G---r~l~V~ 132 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG---EKVDVR 132 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT---EECEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---eEeEEE
Confidence 4788999999999999999999999 99999886542 2 3799999999999999999999999865 699999
Q ss_pred eecCCcc
Q 026793 93 YSRHTDL 99 (233)
Q Consensus 93 fSk~~~L 99 (233)
+++.+.+
T Consensus 133 ~a~~~~~ 139 (156)
T 3n9u_C 133 PATRQNL 139 (156)
T ss_dssp ECCHHHH
T ss_pred EcCCCcc
Confidence 9876544
No 129
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.56 E-value=3.2e-15 Score=107.78 Aligned_cols=70 Identities=17% Similarity=0.299 Sum_probs=59.5
Q ss_pred EEEEeCCCCCC------CHHHHHHhhccCCceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 20 LASIENMQYAV------TVDVLNTVFSAFGTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 20 lV~V~NL~y~V------Ted~L~~iFS~yG~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
+|||.||++.+ |+++|.++|++||.|++|.|.++++ .++|||+|.+.++|++|++.|||..|.+. ++|+|
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~--~~l~V 80 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ--HTFRV 80 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS--SCCCC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc--eeEEe
Confidence 46799999999 7799999999999999998874332 47999999999999999999999998542 25554
No 130
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.55 E-value=2.4e-14 Score=103.79 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=61.1
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-.|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++. +|..|.+ +.|+|.+|
T Consensus 12 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g---~~i~v~~A 87 (87)
T 3s7r_A 12 GKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDG---RVIDPKKA 87 (87)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETT---EEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECC---EEEEEEeC
Confidence 3557999999999999999999999999998875432 46999999999999999975 8887744 68888875
No 131
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=2.1e-14 Score=123.54 Aligned_cols=74 Identities=16% Similarity=0.348 Sum_probs=66.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
+|+|.||++.+|+++|+++|++||.|++|.|..++. ++|||+|.+.++|++|++.|||..|.++ +.|+|+|+|.
T Consensus 209 ~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~-g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~v~~akk 282 (282)
T 3pgw_A 209 ILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH-DIAFVEFDNEVQAGAARDALQGFKITQN--NAMKISFAKK 282 (282)
T ss_pred EEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC-cEEEEEeCCHHHHHHHHHHcCCcEeCCC--CEEEEEEecC
Confidence 456999999999999999999999999999886553 5999999999999999999999999744 7999999873
No 132
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.55 E-value=1.3e-14 Score=121.61 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=67.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
.|+|.||++.+|+++|+++|++||.|++|.|..+.+ .++|||+|.+.++|++|++.|||..|.+ ++|+|++++.+
T Consensus 105 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g---~~i~V~~a~~~ 181 (213)
T 4f02_A 105 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND---RKVFVGRFKSR 181 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECCCH
T ss_pred cceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECC---EEEEEEEcCCC
Confidence 478999999999999999999999999998875443 4799999999999999999999999854 69999998764
No 133
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.7e-14 Score=108.00 Aligned_cols=81 Identities=14% Similarity=0.200 Sum_probs=66.8
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEE-EEEEccC-C--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQK-VAIFEKN-G--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~k-I~If~k~-~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
..--+|||.||++.+|+++|.++|+.||.|.+ |.|..+. + .++|||+|++.++|++|++. ||..|.+ +.|+|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g---r~i~v 88 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH---RYIEI 88 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS---SCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC---cEEEE
Confidence 34456789999999999999999999999998 7665432 2 47999999999999999998 9988754 58999
Q ss_pred EeecCCcce
Q 026793 92 SYSRHTDLN 100 (233)
Q Consensus 92 ~fSk~~~L~ 100 (233)
..++.+++.
T Consensus 89 ~~~~~~~~~ 97 (104)
T 1wg5_A 89 FKSSRAEVR 97 (104)
T ss_dssp EEECTTTSC
T ss_pred EECCHHHHH
Confidence 988766543
No 134
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.54 E-value=4.7e-15 Score=117.97 Aligned_cols=79 Identities=22% Similarity=0.369 Sum_probs=68.7
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
..-+|||.||++.+|+++|.++|++||.|++|.|..+. ..++|||+|++.++|++|++.|||..|.+ ++|+|+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g---~~l~V~ 122 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG---RELRVQ 122 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS---SCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEE
Confidence 34567899999999999999999999999999886542 24699999999999999999999999865 599999
Q ss_pred eecCCc
Q 026793 93 YSRHTD 98 (233)
Q Consensus 93 fSk~~~ 98 (233)
|++...
T Consensus 123 ~a~~~~ 128 (135)
T 2lea_A 123 MARYGR 128 (135)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 988653
No 135
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=2.1e-14 Score=121.61 Aligned_cols=96 Identities=24% Similarity=0.355 Sum_probs=76.3
Q ss_pred EEEEEeCCCC-CCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 19 LLASIENMQY-AVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 19 LlV~V~NL~y-~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
-+|||.||++ .+|+++|+++|++||.|++|.|..+. .++|||+|.+.++|++|++.|||..|.+ +.|+|++++..
T Consensus 35 ~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g---~~l~v~~a~~~ 110 (229)
T 2adc_A 35 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHG---KPIRITLSKHQ 110 (229)
T ss_dssp SEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSS---SBCEEECCSCC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEEecCc
Confidence 3456999999 99999999999999999999987765 3589999999999999999999999865 59999999876
Q ss_pred cceeecC----CCCccccccCCccc
Q 026793 98 DLNVKAY----SDKSRDYTVQDQTL 118 (233)
Q Consensus 98 ~L~Vr~n----ndksrDYT~p~~~~ 118 (233)
.....+. ....+||......+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHR 135 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCC
T ss_pred cccCccccccccccccccccCcccc
Confidence 5443322 23355666544333
No 136
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=8.8e-15 Score=103.38 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=62.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
+|+|.||++.+|+++|.++|++||.|.+|.|..+.. .++|||+|.+.++|++|++.|| ..|.+ ++|+|++|
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g---~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS---KTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS---CCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC---EEEEEEec
Confidence 478999999999999999999999999998876432 4799999999999999999999 77754 58888875
No 137
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=2.9e-13 Score=116.48 Aligned_cols=76 Identities=22% Similarity=0.431 Sum_probs=66.6
Q ss_pred EEEEeCCCCCCCHHHHH----HhhccCCceEEEEEEccC-CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 20 LASIENMQYAVTVDVLN----TVFSAFGTVQKVAIFEKN-GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~----~iFS~yG~V~kI~If~k~-~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
+|||.||++.+|+++|+ ++|++||.|++|+|.+.. ..++|||+|.+.++|++|++.|||..|.+ +.|+|+|+
T Consensus 11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a 87 (282)
T 3pgw_A 11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD---KPMRIQYA 87 (282)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC---cEEEEEEe
Confidence 45699999999999955 999999999999887532 35799999999999999999999999965 69999999
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+...
T Consensus 88 ~~~~ 91 (282)
T 3pgw_A 88 KTDS 91 (282)
T ss_pred ccCc
Confidence 8765
No 138
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.9e-14 Score=110.40 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=67.5
Q ss_pred CCceEEEEEeCCCCCCCHHHHHHhhccCCce-EEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTV-QKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V-~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
+..-.+|||.||++.+|+++|+++|+.||.| .+|.|..+.. .++|||+|.+.++|++|++. ||..|.+ +.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g---r~i~ 87 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG---REAF 87 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT---EEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC---eEEE
Confidence 3344567899999999999999999999999 7787764322 47999999999999999997 9988854 6999
Q ss_pred EEeecCCcc
Q 026793 91 LSYSRHTDL 99 (233)
Q Consensus 91 I~fSk~~~L 99 (233)
|.+++.++.
T Consensus 88 v~~a~~~~~ 96 (114)
T 2cpy_A 88 VHVVTLEDM 96 (114)
T ss_dssp EEEECHHHH
T ss_pred EEECCHHHH
Confidence 999876543
No 139
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.53 E-value=7.8e-14 Score=109.09 Aligned_cols=76 Identities=12% Similarity=0.216 Sum_probs=66.6
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
..-.|+|.||++.+|+++|.++|++||.|++|.+..+. . .++|||+|.+.++|.+|++.|||..|.+ ++|+|+
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~i~v~ 162 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG---RPLRIN 162 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC---cEEEEE
Confidence 34567799999999999999999999999999887542 1 3689999999999999999999999854 799999
Q ss_pred eec
Q 026793 93 YSR 95 (233)
Q Consensus 93 fSk 95 (233)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 140
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.6e-14 Score=107.72 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=65.9
Q ss_pred CCCceEEEEEeCCCCCCC-----------HHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeec
Q 026793 14 LESNVLLASIENMQYAVT-----------VDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIY 82 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~VT-----------ed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy 82 (233)
.++++|. |.||....+ +++|+++|++||.|++|.|.++...++|||+|.+.++|++|++.|||+.|.
T Consensus 13 ~~s~~l~--l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVI--IKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEE--EESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEE--EEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3555654 999954432 579999999999999998876666689999999999999999999999985
Q ss_pred CCccceEEEEeecCC
Q 026793 83 DGGYCKLHLSYSRHT 97 (233)
Q Consensus 83 ~gg~~~LrI~fSk~~ 97 (233)
+ ++|+|+|++..
T Consensus 91 g---r~l~v~~a~~~ 102 (112)
T 2dit_A 91 G---RQITAQAWDGT 102 (112)
T ss_dssp T---EECEEEECCSC
T ss_pred C---cEEEEEEeCCC
Confidence 4 69999998664
No 141
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.52 E-value=3e-14 Score=111.57 Aligned_cols=74 Identities=15% Similarity=0.230 Sum_probs=65.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
.|+|.||++.+|+++|+++|++||.|++|.+..+. . .++|||+|.+.++|++|++.|||..|.+. .++|+|+||
T Consensus 90 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~~~i~v~~A 167 (167)
T 1fxl_A 90 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA-TEPITVKFA 167 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred cEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC-ccceEEEeC
Confidence 46799999999999999999999999999887543 2 37999999999999999999999998765 457999886
No 142
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.6e-14 Score=107.61 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=65.2
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCc-eEEEEEE-ccC----CCeeEEEEeCCHHHHHHHHHHhc--CCeecCCccceEE
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGT-VQKVAIF-EKN----GGTQALIQYPDITTAAVAKESLE--GHCIYDGGYCKLH 90 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~-V~kI~If-~k~----~~~~AFVEF~d~esA~~A~~~LN--G~~Iy~gg~~~Lr 90 (233)
-+|||.||++.+|+++|.++|++||. |++|.|. .+. ..++|||+|.+.++|++|++.|| +..|.+ ++|+
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g---~~l~ 85 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG---HQIA 85 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT---BCCE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC---CeEE
Confidence 45679999999999999999999999 9999887 322 24799999999999999999996 477654 6999
Q ss_pred EEeecCCc
Q 026793 91 LSYSRHTD 98 (233)
Q Consensus 91 I~fSk~~~ 98 (233)
|+|++.+.
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99987653
No 143
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=1.7e-14 Score=111.94 Aligned_cols=78 Identities=10% Similarity=0.196 Sum_probs=66.5
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCc---eEEEEEEcc-CC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGT---VQKVAIFEK-NG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~---V~kI~If~k-~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
...+|||.||++.+|+++|.++|+.||. |.+|.|..+ .+ .++|||+|++.++|++|++ |||+.|.+ +.|+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g---r~i~ 91 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH---RYIE 91 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT---EEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC---eEEE
Confidence 3456789999999999999999999999 888877643 32 3799999999999999999 99998854 6999
Q ss_pred EEeecCCc
Q 026793 91 LSYSRHTD 98 (233)
Q Consensus 91 I~fSk~~~ 98 (233)
|.+++.++
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 144
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.52 E-value=3.3e-14 Score=108.70 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=64.7
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
--.|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.+ |..|. + +.|+|++
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~-g--~~l~V~~ 100 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD-S--KTIDPKV 100 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET-T--EEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC-C--EEEEEEE
Confidence 34567999999999999999999999999998876432 469999999999999999986 46664 3 6999999
Q ss_pred ecCCc
Q 026793 94 SRHTD 98 (233)
Q Consensus 94 Sk~~~ 98 (233)
++.+.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87654
No 145
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=3.5e-15 Score=111.19 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=64.7
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEc---cCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFE---KNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~---k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
.-..|||.||++.+|+++|+++|++||.|..+++.+ ....++|||+|.+.++|++|++ |||..|.+ +.|+|++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g---~~l~V~~ 91 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG---NEIKLEK 91 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT---BCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC---cEEEEEE
Confidence 456788999999999999999999999998733322 1234699999999999999999 99999864 6999999
Q ss_pred ecCC
Q 026793 94 SRHT 97 (233)
Q Consensus 94 Sk~~ 97 (233)
++.+
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8764
No 146
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.52 E-value=5e-14 Score=115.50 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=67.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
..|+|.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..|.+ +.|+|+|+
T Consensus 126 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g---~~i~V~~a 202 (216)
T 2qfj_A 126 NRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG---QYLRVGKA 202 (216)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS---SBCEEEEC
T ss_pred cEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC---cEEEEEEe
Confidence 3567999999999999999999999999998876421 4699999999999999999999999854 68999998
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+...
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7653
No 147
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.1e-14 Score=108.96 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=63.7
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC---CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN---GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~---~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
+|||.||++.+|+++|.++|+.||.|.+|.|..+. ..++|||+|++.++|++|++ +||..|.+ +.|+|.+++.
T Consensus 13 ~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g---r~l~V~~~~~ 88 (103)
T 1s79_A 13 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE---TDLLILFKDD 88 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT---TTCEEEEHHH
T ss_pred EEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC---EEEEEEEchH
Confidence 46799999999999999999999999999887533 24799999999999999999 89998865 5888887654
No 148
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=112.01 Aligned_cols=78 Identities=6% Similarity=0.075 Sum_probs=65.4
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEE-EEEccC-C--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKV-AIFEKN-G--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI-~If~k~-~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.-..|||.||++.+|+++|.++|+.||.|.++ +|..+. + .++|||+|.+.++|++|++ |||..|.+ +.|+|+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g---r~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN---RFIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT---SCBEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC---cEEEEE
Confidence 34678899999999999999999999999873 444332 2 4799999999999999999 99999865 589999
Q ss_pred eecCCc
Q 026793 93 YSRHTD 98 (233)
Q Consensus 93 fSk~~~ 98 (233)
+++.++
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 149
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=6.2e-14 Score=110.44 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=65.6
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
.|+|.||++.+|+++|+++|++||.|++|.+..+. . .++|||+|.+.++|.+|++.|||..|.++ .++|+|.||
T Consensus 91 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~~~l~V~~A 168 (168)
T 1b7f_A 91 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG-SQPLSVRLA 168 (168)
T ss_dssp EEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred CEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC-CeEEEEEeC
Confidence 45699999999999999999999999999887643 2 36999999999999999999999998765 579999886
No 150
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.51 E-value=2.3e-14 Score=123.63 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=68.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCC--ceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFG--TVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG--~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
.+|||.||.+.+|+++|.++|++|| +|++|.|..++ . .++|||+|++.++|++|++.|||+.|.+ ++|+|.
T Consensus 69 ~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G---r~l~V~ 145 (229)
T 3q2s_C 69 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG---QNPVVT 145 (229)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT---BCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC---EEeEEE
Confidence 4689999999999999999999999 99999886543 2 3799999999999999999999999865 699999
Q ss_pred eecCCcc
Q 026793 93 YSRHTDL 99 (233)
Q Consensus 93 fSk~~~L 99 (233)
+++...+
T Consensus 146 ~a~~~~~ 152 (229)
T 3q2s_C 146 PVNKQFL 152 (229)
T ss_dssp ECCHHHH
T ss_pred ECCCCcc
Confidence 9876543
No 151
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=2.5e-14 Score=113.20 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=65.0
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEE--------EEEEc-cCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceE
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQK--------VAIFE-KNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKL 89 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~k--------I~If~-k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~L 89 (233)
-.|||.||++.+|+++|.++|++||.|.+ |.+.. ....++|||+|.+.++|++|++.|||..|.+ +.|
T Consensus 46 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g---~~l 122 (143)
T 3egn_A 46 CRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG---KPM 122 (143)
T ss_dssp SEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT---EEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC---cEE
Confidence 45679999999999999999999999876 33332 2335799999999999999999999999964 699
Q ss_pred EEEeecCCc
Q 026793 90 HLSYSRHTD 98 (233)
Q Consensus 90 rI~fSk~~~ 98 (233)
+|+|++...
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999997653
No 152
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=8.1e-14 Score=103.73 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=60.5
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEc-cCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFE-KNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~-k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-+|||.||++.+|+++|+++|+.|+. |.+.. +.. .++|||+|.+.++|++|++.|||..|.+ +.|+|+|+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a 89 (102)
T 2fc8_A 16 KTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG---NKVTLDWA 89 (102)
T ss_dssp SSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT---EECEEEEC
T ss_pred CEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEEe
Confidence 34569999999999999999999864 33332 221 3799999999999999999999999865 69999998
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+.+.
T Consensus 90 ~~~~ 93 (102)
T 2fc8_A 90 KPKG 93 (102)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 153
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.51 E-value=5.7e-14 Score=104.17 Aligned_cols=74 Identities=20% Similarity=0.199 Sum_probs=60.3
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
-+|||.||++.+|+++|+++|++||.|++|.|..+ ..++|||+|++.++|+ .|+|..+... .++|+|.+++.+.
T Consensus 12 ~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~----~~~~~~~~~~-g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 12 SKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQ----SLCGEDLIIK-GISVHISNAEPKH 85 (89)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHH----HHTTCEEEET-TEEEEEEECC---
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHH----HHcCCCcccC-CEEEEEEEcCCCC
Confidence 35679999999999999999999999999988765 3469999999999988 3788877543 3789999887643
No 154
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.4e-14 Score=106.88 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=63.9
Q ss_pred CCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 14 LESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
.+..-.+|+|.||++.+|+++|.++|+.||. ++|.|..+.. .++|||+|++.++|++|++ +||+.|.+ +.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g---r~i~ 85 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQH---RYVE 85 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS---SCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECC---cEEE
Confidence 3344456789999999999999999999995 4887754333 3699999999999999995 79988754 5888
Q ss_pred EEeecCCc
Q 026793 91 LSYSRHTD 98 (233)
Q Consensus 91 I~fSk~~~ 98 (233)
|..+....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 88876543
No 155
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=3.7e-14 Score=115.90 Aligned_cols=93 Identities=25% Similarity=0.383 Sum_probs=75.0
Q ss_pred EEEEeCCCC-CCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 20 LASIENMQY-AVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 20 lV~V~NL~y-~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
+|+|.||++ .+|+++|+++|++||.|++|.|..+. .++|||+|.+.++|++|++.|||..|.+ +.|+|++++...
T Consensus 5 ~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g---~~l~v~~a~~~~ 80 (198)
T 1qm9_A 5 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHG---KPIRITLSKHQN 80 (198)
T ss_dssp EEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSS---CCCEEEECCCCS
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecC---eEEEEEEecCCC
Confidence 467999999 99999999999999999999887665 3589999999999999999999999855 599999998765
Q ss_pred ceeecC----CCCccccccCCc
Q 026793 99 LNVKAY----SDKSRDYTVQDQ 116 (233)
Q Consensus 99 L~Vr~n----ndksrDYT~p~~ 116 (233)
....+. ....++|.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ 102 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPL 102 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCT
T ss_pred cCCCCcCCccccccccccCCch
Confidence 443322 233456655433
No 156
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=6.5e-14 Score=109.55 Aligned_cols=76 Identities=20% Similarity=0.368 Sum_probs=67.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
+|+|.||++.+|+++|+++|++||.|.+|.|..+.. .++|||+|.+.++|++|++.|||..|.+ +.|+|.+++.
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g---~~i~v~~~~~ 78 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN---NIVKINWAFQ 78 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECCC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC---CeeEEEEcCC
Confidence 578999999999999999999999999998875442 3799999999999999999999999965 6899999865
Q ss_pred Cc
Q 026793 97 TD 98 (233)
Q Consensus 97 ~~ 98 (233)
..
T Consensus 79 ~~ 80 (166)
T 3md3_A 79 SQ 80 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 157
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=6.1e-14 Score=110.88 Aligned_cols=80 Identities=10% Similarity=0.192 Sum_probs=67.6
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC------CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN------GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~------~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
-.+|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|.+.++|++|++.|||..+.++....+++
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 3578899999999999999999999999999887543 2369999999999999999999999987653457777
Q ss_pred EeecCC
Q 026793 92 SYSRHT 97 (233)
Q Consensus 92 ~fSk~~ 97 (233)
.+++..
T Consensus 83 ~~~~~~ 88 (175)
T 3nmr_A 83 KPADSE 88 (175)
T ss_dssp EECGGG
T ss_pred cccccc
Confidence 776543
No 158
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.50 E-value=1.2e-13 Score=108.11 Aligned_cols=76 Identities=16% Similarity=0.299 Sum_probs=66.8
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
+|+|.||++.+|+++|+++|+.||.|++|.+..+. . .++|||+|.+.++|++|++.|||..|.+ +.|+|.+++
T Consensus 4 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~~l~v~~~~ 80 (167)
T 1fxl_A 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT---KTIKVSYAR 80 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECC
T ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC---ceEEEEecC
Confidence 46799999999999999999999999999887643 2 2799999999999999999999999865 689999987
Q ss_pred CCc
Q 026793 96 HTD 98 (233)
Q Consensus 96 ~~~ 98 (233)
...
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 159
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.49 E-value=7.1e-14 Score=109.59 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=65.0
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
..-.|||.|+ ++|+++|+++|++||.|++|.|... .++|||+|++.++|++|++.|||..|.+ ++|+|+|++.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~--kg~aFV~f~~~~~A~~Ai~~lng~~~~g---~~l~V~~a~~ 110 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP--RNCAFVTYEKMESADQAVAELNGTQVES---VQLKVNIARK 110 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT--TTEEEEECSSHHHHHHHHHHHTTCBCSS---CBCEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEEeCC
Confidence 4456779995 6999999999999999999988643 3599999999999999999999999854 6999999987
Q ss_pred Cc
Q 026793 97 TD 98 (233)
Q Consensus 97 ~~ 98 (233)
..
T Consensus 111 ~~ 112 (121)
T 2bz2_A 111 QP 112 (121)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 160
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=1.2e-13 Score=111.72 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=68.8
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC--C--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN--G--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~--~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
.....|+|.||++.+|+++|+++|++||.|++|.+..+. + .++|||+|.+.++|++|++.|||..|.+ +.|+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 188 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD---KKLLV 188 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEE
Confidence 344567799999999999999999999999999887643 2 4799999999999999999999999854 69999
Q ss_pred EeecCC
Q 026793 92 SYSRHT 97 (233)
Q Consensus 92 ~fSk~~ 97 (233)
+|++..
T Consensus 189 ~~a~~~ 194 (198)
T 2yh0_A 189 QRASVG 194 (198)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 998765
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.49 E-value=1e-13 Score=109.17 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=66.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
+|+|.||+..+|+++|+++|+.||.|++|.+..+. . .++|||+|.+.++|++|++.|||..|.+ ++|+|.+++
T Consensus 5 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~~l~v~~~~ 81 (168)
T 1b7f_A 5 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN---KRLKVSYAR 81 (168)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC---cEEEEEecC
Confidence 46799999999999999999999999999886543 2 3699999999999999999999999854 699999987
Q ss_pred CC
Q 026793 96 HT 97 (233)
Q Consensus 96 ~~ 97 (233)
..
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 162
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=1.1e-13 Score=115.06 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=68.8
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC---CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN---GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~---~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
.--.|||.||++.+|+++|.++|++||.|++|.|..+. ..++|||+|++.++|++|++.|||..|.+ +.|+|+|
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G---r~l~V~~ 163 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG---RPMDIQL 163 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS---SBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC---EEEEEEE
Confidence 34577899999999999999999999999999887533 24799999999999999999999998855 5999999
Q ss_pred ecCCc
Q 026793 94 SRHTD 98 (233)
Q Consensus 94 Sk~~~ 98 (233)
|....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87654
No 163
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=1.1e-13 Score=117.14 Aligned_cols=76 Identities=28% Similarity=0.381 Sum_probs=67.1
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCC-ceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFG-TVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG-~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
.+|+|.||++.+|+++|+++|++|| .|.+|.|+.+.. ++|||+|++.++|++|++.|||..|.++ ++|+|+|++.+
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-g~afV~f~~~~~A~~Ai~~l~g~~~~~g--~~l~v~~a~~~ 228 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR-KMALIQMGSVEEAVQALIDLHNHDLGEN--HHLRVSFSKST 228 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSST-TCEEEEESSHHHHHHHHHHHTTCBSSSS--CBCEEEECSSC
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCC-cEEEEEECCHHHHHHHHHHHCCCccCCC--CeEEEEEecCC
Confidence 3456999999999999999999999 999999976443 5899999999999999999999999634 79999998763
No 164
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.48 E-value=1.8e-14 Score=101.50 Aligned_cols=71 Identities=13% Similarity=0.167 Sum_probs=60.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
+|+|.||++.+|+++|.++|++||.|++|.|..+. ..++|||+|++.++|++|++. +|..|.+ ++|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g---~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGL---SKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTT---BCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECC---EEEEEEEC
Confidence 37899999999999999999999999999876532 247999999999999999995 8888755 47777654
No 165
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.47 E-value=1.1e-13 Score=99.74 Aligned_cols=68 Identities=18% Similarity=0.312 Sum_probs=60.1
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccC----C-------ceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccc
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAF----G-------TVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYC 87 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~y----G-------~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~ 87 (233)
-+|||.||++.+|+++|.++|++| | .|.++.+... .++|||+|.+.++|++|+ .|||..|.+ +
T Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g---~ 80 (87)
T 2hzc_A 7 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQG---Q 80 (87)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETT---E
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECC---e
Confidence 356799999999999999999999 8 9999988765 359999999999999999 999999865 5
Q ss_pred eEEEE
Q 026793 88 KLHLS 92 (233)
Q Consensus 88 ~LrI~ 92 (233)
.|+|+
T Consensus 81 ~l~V~ 85 (87)
T 2hzc_A 81 SLKIR 85 (87)
T ss_dssp ECEEE
T ss_pred EEEEe
Confidence 77775
No 166
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.47 E-value=1.3e-13 Score=110.13 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=64.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
.-.|+|.||++.+|+++|.++|++||.|..+ .......++|||+|.+.++|.+|++.|||..|.+ +.|+|+|++.+
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~i~v~~a~~k 174 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG---RSVSLYYTGEK 174 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT---EEEEEEECSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEecCCC
Confidence 3456799999999999999999999999876 2222335799999999999999999999999854 69999999764
No 167
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.47 E-value=8.4e-14 Score=113.75 Aligned_cols=75 Identities=28% Similarity=0.391 Sum_probs=66.6
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCC-ceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFG-TVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG-~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
.|+|.||++.+|+++|+++|++|| .|.+|.|+.+.. ++|||+|++.++|++|++.|||..|.++ ++|+|+|++.+
T Consensus 122 ~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~-g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~v~~a~~~ 197 (198)
T 1qm9_A 122 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR-KMALIQMGSVEEAVQALIDLHNHDLGEN--HHLRVSFSKST 197 (198)
T ss_dssp EEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTS-SCEEEECSSHHHHHHHHHHHTSSCCSSC--CSCCEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCC-cEEEEEeCCHHHHHHHHHHhcCCccCCC--CeEEEEeeccc
Confidence 456999999999999999999999 999999976543 5899999999999999999999999634 79999998753
No 168
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.47 E-value=1.8e-13 Score=108.36 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=64.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
..|+|.||++.+|+++|+++|++||.|++|.|..+. . .++|||+|.+.++|++|++.|||..|.+ ++|+|+||
T Consensus 95 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~A 171 (172)
T 2g4b_A 95 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD---KKLLVQRA 171 (172)
T ss_dssp TCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT---EECEEEEC
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC---eEEEEEeC
Confidence 345699999999999999999999999999887653 2 3699999999999999999999999854 69999987
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.47 E-value=1.7e-13 Score=112.31 Aligned_cols=76 Identities=13% Similarity=0.245 Sum_probs=65.4
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-+|||.||++.+|+++|+++|++||.|++|.|..+. ..++|||+|.+.++|++|++.|||..|.+ +.|+|.++
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g---~~l~v~~~ 105 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG---RNIKVGRP 105 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC----CCCEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC---eeEEEecC
Confidence 357899999999999999999999999999886543 24799999999999999999999999865 58899887
Q ss_pred cCC
Q 026793 95 RHT 97 (233)
Q Consensus 95 k~~ 97 (233)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 644
No 170
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.46 E-value=1.9e-13 Score=114.44 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=66.6
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
.-+|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++.|||..+.+ +.|++.+
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g---~~i~~~~ 91 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG---KPVRIMW 91 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC---ccccccc
Confidence 44688999999999999999999999999998875332 3799999999999999999999998865 5888888
Q ss_pred ecCC
Q 026793 94 SRHT 97 (233)
Q Consensus 94 Sk~~ 97 (233)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7643
No 171
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.46 E-value=5.4e-14 Score=113.38 Aligned_cols=79 Identities=10% Similarity=0.196 Sum_probs=66.5
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCc---eEEEEEEcc-CC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGT---VQKVAIFEK-NG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~---V~kI~If~k-~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
.-.+|+|.||++.+|+++|.++|+.||. |.+|.|..+ .+ .++|||+|++.++|++|++ |||+.|.+ +.|+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g---r~i~ 118 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH---RYIE 118 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS---SEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC---EEEE
Confidence 3456789999999999999999999999 788877643 32 3799999999999999999 99998854 5999
Q ss_pred EEeecCCcc
Q 026793 91 LSYSRHTDL 99 (233)
Q Consensus 91 I~fSk~~~L 99 (233)
|..++.+++
T Consensus 119 V~~a~~~e~ 127 (136)
T 2hgl_A 119 VFKSHRTEM 127 (136)
T ss_dssp EEECCHHHH
T ss_pred EEECChHHH
Confidence 999865543
No 172
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=4.9e-15 Score=113.45 Aligned_cols=78 Identities=13% Similarity=0.273 Sum_probs=66.6
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEE--------EEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCc
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQK--------VAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGG 85 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~k--------I~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg 85 (233)
--+|||.||++.+|+++|.++|++||.|++ |.|..+. ..++|||+|.+.++|++|++.|||..|.+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-- 84 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG-- 84 (116)
Confidence 345679999999999999999999999998 7665432 24699999999999999999999999865
Q ss_pred cceEEEEeecCCc
Q 026793 86 YCKLHLSYSRHTD 98 (233)
Q Consensus 86 ~~~LrI~fSk~~~ 98 (233)
++|+|++++.+.
T Consensus 85 -~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 -NPIKVSFATRRA 96 (116)
Confidence 589999987653
No 173
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.46 E-value=2.4e-14 Score=108.75 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=65.9
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCc---eEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceE
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGT---VQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKL 89 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~---V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~L 89 (233)
..-.+|+|.||++.+|+++|.++|+.||. |.+|.|..+.. .++|||+|++.++|++|++ |||..|.+ +.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g---r~i 84 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ---RYV 84 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS---SCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC---eEE
Confidence 34456779999999999999999999998 88888764332 4799999999999999999 99988744 588
Q ss_pred EEEeecCCc
Q 026793 90 HLSYSRHTD 98 (233)
Q Consensus 90 rI~fSk~~~ 98 (233)
+|.+++.++
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 888876544
No 174
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=105.97 Aligned_cols=86 Identities=15% Similarity=0.278 Sum_probs=68.2
Q ss_pred CCCCCCCCCCCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C--CeeEEEEeCCHHHHHHHHHHhcCCeec
Q 026793 6 GPDGKKKELESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G--GTQALIQYPDITTAAVAKESLEGHCIY 82 (233)
Q Consensus 6 g~~g~~~~~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~--~~~AFVEF~d~esA~~A~~~LNG~~Iy 82 (233)
+..++.......-..|+|.||++.+|+++|.++|+.| .|.+|.|..+. + .++|||+|++.++|++|+ .|||+.|.
T Consensus 4 ~~~~~~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~ 81 (109)
T 2dnn_A 4 GSSGKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI 81 (109)
T ss_dssp CCCCCCCCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET
T ss_pred CCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC
Confidence 3444444444445678899999999999999999999 89999886432 2 479999999999999999 69999885
Q ss_pred CCccceEEEEeecC
Q 026793 83 DGGYCKLHLSYSRH 96 (233)
Q Consensus 83 ~gg~~~LrI~fSk~ 96 (233)
+ +.|+|..++.
T Consensus 82 g---r~i~V~~a~~ 92 (109)
T 2dnn_A 82 Q---RYVEVSPATE 92 (109)
T ss_dssp T---EEEEEEECCH
T ss_pred C---eEEEEEECCc
Confidence 4 5888877654
No 175
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.45 E-value=1.7e-13 Score=102.20 Aligned_cols=75 Identities=12% Similarity=0.153 Sum_probs=64.0
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
--+|||.||++.+|+++|+++|+.||.|++|.|..+.. .++|||+|++.++|++|++ ||..|.+ +.|+|.++
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g---~~l~v~~a 83 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG---KKLKLGPA 83 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT---EECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC---EEEEEEEC
Confidence 35688999999999999999999999999998876433 3799999999999999999 8888754 58888887
Q ss_pred cCC
Q 026793 95 RHT 97 (233)
Q Consensus 95 k~~ 97 (233)
...
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 643
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.45 E-value=1.3e-13 Score=108.75 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=65.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
-.|+|.||++.+|+++|+++|++||.|++|.+..+. ..++|||+|.+.++|++|++ |||..|.+ ++|+|.||
T Consensus 88 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g---~~i~V~~a 163 (167)
T 2cjk_A 88 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD---RKIEIKRA 163 (167)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS---SCEEEEEC
T ss_pred CeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC---eEEEEeec
Confidence 357899999999999999999999999999887542 24799999999999999998 89988855 59999998
Q ss_pred cCC
Q 026793 95 RHT 97 (233)
Q Consensus 95 k~~ 97 (233)
+.+
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 177
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=99.35 Aligned_cols=74 Identities=22% Similarity=0.175 Sum_probs=60.1
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
-+|||.||++.+|+++|.++|++||.|++|.|..+ ..++|||+|++.++|++ |++..+... ..+|+|.+++.+.
T Consensus 6 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~~~-g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLIIK-GISVHISNAEPKH 79 (88)
T ss_dssp CEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEEET-TEEEEEECCCCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCceeC-CEEEEEEecCCCC
Confidence 35679999999999999999999999999998765 34699999999999974 466665333 2688898887653
No 178
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.42 E-value=5.4e-13 Score=107.73 Aligned_cols=76 Identities=11% Similarity=0.177 Sum_probs=64.0
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC--C--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN--G--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~--~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
..|+|.||++.+|+++|+++|++||.|++|.|..+. + .++|||+|.+.++|++|++. +|+.|.+ +.|+|.++
T Consensus 105 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G---~~i~v~~a 180 (196)
T 1l3k_A 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG---HNCEVRKA 180 (196)
T ss_dssp SEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETT---EECEEEEC
T ss_pred ceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECC---EEEEEEec
Confidence 457799999999999999999999999999887543 1 47999999999999999987 7888855 58999998
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
..++
T Consensus 181 ~~k~ 184 (196)
T 1l3k_A 181 LSKQ 184 (196)
T ss_dssp C---
T ss_pred CChh
Confidence 7654
No 179
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=5.2e-13 Score=102.69 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=65.9
Q ss_pred CCCceEEEEEeCCCC--CC--------CHHHHHHhhccCCceEEEEEEccC------CCeeEEEEeCCHHHHHHHHHHhc
Q 026793 14 LESNVLLASIENMQY--AV--------TVDVLNTVFSAFGTVQKVAIFEKN------GGTQALIQYPDITTAAVAKESLE 77 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y--~V--------Ted~L~~iFS~yG~V~kI~If~k~------~~~~AFVEF~d~esA~~A~~~LN 77 (233)
.||+||. |.|+.. .+ .+++|++.|++||.|++|.|.++. ..++|||+|++.++|++|++.||
T Consensus 3 ~ps~vl~--L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 3 HPTEVLC--LMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp SCCSEEE--EESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCeEEE--EECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 5889987 889853 23 246899999999999999987542 24799999999999999999999
Q ss_pred CCeecCCccceEEEEeecCCc
Q 026793 78 GHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 78 G~~Iy~gg~~~LrI~fSk~~~ 98 (233)
|+.+.+ +.|+|+|+..++
T Consensus 81 G~~f~G---R~i~v~~~~~~~ 98 (105)
T 3v4m_A 81 GRKFAN---RVVVTKYCDPDS 98 (105)
T ss_dssp TCEETT---EECEEEEECHHH
T ss_pred CCEeCC---CEEEEEEeCHHH
Confidence 998854 699999976554
No 180
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.42 E-value=2.9e-13 Score=119.30 Aligned_cols=77 Identities=16% Similarity=0.308 Sum_probs=65.4
Q ss_pred eEEEEEeCCCCCC---------CHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeec------
Q 026793 18 VLLASIENMQYAV---------TVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIY------ 82 (233)
Q Consensus 18 VLlV~V~NL~y~V---------Ted~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy------ 82 (233)
.-+|||+||...+ |+++|.++|++||.|++|.|...+ ++|||+|.+.++|+.|+++|||+.|.
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k--G~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e 211 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK--NCGFVKFKYQANAEFAKEAMSNQTLLLPSDKE 211 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHHHTTCCCCCTTSTT
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC--CEEEEEeCCHHHHHHHHHHhCCCEEecccccc
Confidence 4467899999988 799999999999999999988654 48999999999999999999999992
Q ss_pred -----CCccceEEEEeecCCc
Q 026793 83 -----DGGYCKLHLSYSRHTD 98 (233)
Q Consensus 83 -----~gg~~~LrI~fSk~~~ 98 (233)
.+ ..|+|.||+.+.
T Consensus 212 ~~~~~~g--r~L~V~wA~~~p 230 (240)
T 3u1l_A 212 WDDRREG--TGLLVKWANEDP 230 (240)
T ss_dssp GGGGGGS--CCCEEEECC---
T ss_pred ccccCCC--CEEEEEEccCCC
Confidence 22 689999998653
No 181
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.42 E-value=5.3e-13 Score=125.50 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=68.1
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
...|||.||++.||+++|.++|++||.|++|.|+.+. ..++|||+|.+.++|++|++.|||..|.+ +.|+|+|
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g---r~i~V~~ 178 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG---RRVLVDV 178 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC---EEEEEEE
Confidence 3467899999999999999999999999999886432 24799999999999999999999999854 6999999
Q ss_pred ecCCc
Q 026793 94 SRHTD 98 (233)
Q Consensus 94 Sk~~~ 98 (233)
++...
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 88643
No 182
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.40 E-value=7.4e-14 Score=113.08 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=63.3
Q ss_pred CCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC-C--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN-G--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~-~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
+..-.+|+|.||++.+|+++|.++|++|| |++|.|..+. + .++|||+|++.++|++|+ .|||..|.+ +.|+|
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g---R~i~V 117 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH---RYIEL 117 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS---CCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC---EEEEE
Confidence 33445678999999999999999999999 7788776432 2 479999999999999999 789988754 57888
Q ss_pred EeecCCc
Q 026793 92 SYSRHTD 98 (233)
Q Consensus 92 ~fSk~~~ 98 (233)
..++..+
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 7776543
No 183
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.40 E-value=2.2e-13 Score=108.87 Aligned_cols=80 Identities=14% Similarity=0.197 Sum_probs=63.7
Q ss_pred CCceEEEEEeCCCCCCCHHHHHHhhccCCceE--EEEEEccC-C--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceE
Q 026793 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTVQ--KVAIFEKN-G--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKL 89 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~--kI~If~k~-~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~L 89 (233)
+.+-.+|||.||++.+|+++|.++|+.| .|+ +|.|..+. + .++|||+|++.++|++|++. ++..|.+ +.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~g---R~I 113 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGH---RYI 113 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTT---BCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECC---EEE
Confidence 3344558899999999999999999999 677 78776432 2 47999999999999999995 7777744 588
Q ss_pred EEEeecCCcc
Q 026793 90 HLSYSRHTDL 99 (233)
Q Consensus 90 rI~fSk~~~L 99 (233)
+|..+..+++
T Consensus 114 ~V~~a~~~e~ 123 (126)
T 2hgm_A 114 EVFKSSQEEV 123 (126)
T ss_dssp CCEEECHHHH
T ss_pred EEEECCHHHh
Confidence 8888765443
No 184
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.39 E-value=1.4e-12 Score=112.58 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=68.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~ 98 (233)
-+|||.||++.+|+++|+++|++||.|.+|.|.+.+ ++|||+|.+.++|++|++.|||..|.+ +.|+|.+++...
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k--g~afV~f~~~~~A~~A~~~l~g~~i~g---~~l~v~~a~~~~ 97 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR--GFGFIRLESRTLAEIAKAELDGTILKS---RPLRIRFATHGA 97 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT--TEEEEECSSHHHHHHHHHHHTTCEETT---EECEEEECCCSS
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC--cEEEEEECCHHHHHHHHHHcCCcEECC---ceeEeeecccCC
Confidence 356799999999999999999999999999986543 599999999999999999999999864 699999987653
Q ss_pred -ceee
Q 026793 99 -LNVK 102 (233)
Q Consensus 99 -L~Vr 102 (233)
|.|+
T Consensus 98 ~l~v~ 102 (261)
T 3sde_A 98 ALTVK 102 (261)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 5444
No 185
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.39 E-value=9.5e-13 Score=106.29 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=65.1
Q ss_pred ceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 17 NVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 17 ~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
..-.|||.||++.+|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|++|++. +|..|.+ +.|+|.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g---~~l~v~ 87 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG---RVVEPK 87 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC---EEeeee
Confidence 445677999999999999999999999999998875432 36999999999999999987 8888854 689999
Q ss_pred eecCC
Q 026793 93 YSRHT 97 (233)
Q Consensus 93 fSk~~ 97 (233)
++...
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 87654
No 186
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=5.7e-13 Score=104.68 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=66.9
Q ss_pred CCCCceEEEEEeCCCCCCC----------HHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeec
Q 026793 13 ELESNVLLASIENMQYAVT----------VDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIY 82 (233)
Q Consensus 13 ~~pS~VLlV~V~NL~y~VT----------ed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy 82 (233)
.-+|+||. +.|+...-. +++|++.|++||.|++|.|.++...+++||+|++.++|++|++.|||+.+.
T Consensus 4 p~ps~vv~--L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 4 PLATQCFQ--LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCSEEE--EESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEE--EECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34788876 889854322 457899999999999999976655679999999999999999999999985
Q ss_pred CCccceEEEEeecCCcc
Q 026793 83 DGGYCKLHLSYSRHTDL 99 (233)
Q Consensus 83 ~gg~~~LrI~fSk~~~L 99 (233)
+ +.|+|+|+...+.
T Consensus 82 G---R~i~v~~~~~~~y 95 (114)
T 3s6e_A 82 G---KMITAAYVPLPTY 95 (114)
T ss_dssp T---EECEEEEECHHHH
T ss_pred C---EEEEEEEEcHHHH
Confidence 4 6999999876544
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.38 E-value=9.1e-13 Score=113.88 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=66.2
Q ss_pred EEEEEeCCCCC-CCHHHHHHhhccCCceEEEEEEccCC-----CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 19 LLASIENMQYA-VTVDVLNTVFSAFGTVQKVAIFEKNG-----GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 19 LlV~V~NL~y~-VTed~L~~iFS~yG~V~kI~If~k~~-----~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
..|+|.||++. +|+++|+++|++||.|++|.|..+.. .++|||+|.+.++|.+|+ .|||..|.+ +.|+|+
T Consensus 211 ~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g---~~i~V~ 286 (292)
T 2ghp_A 211 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGN---REISVS 286 (292)
T ss_dssp TEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETT---EEEEEE
T ss_pred ceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECC---cEEEEE
Confidence 34569999999 99999999999999999998876432 479999999999999999 999999854 699999
Q ss_pred eecCC
Q 026793 93 YSRHT 97 (233)
Q Consensus 93 fSk~~ 97 (233)
|++.+
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98864
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.38 E-value=1.5e-12 Score=112.03 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=66.9
Q ss_pred EEEEEeCCCCCC-CHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 19 LLASIENMQYAV-TVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 19 LlV~V~NL~y~V-Ted~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
..|+|.||++.+ |+++|.++|++||.|.+|.|..+.. .++|||+|.+.++|.+|++.|||..|.+ +.|+|.|+
T Consensus 185 ~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a 261 (284)
T 3smz_A 185 RCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG---SHLRVSFC 261 (284)
T ss_dssp SEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT---EECEEEEC
T ss_pred cEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC---eEEEEEEe
Confidence 346799999996 9999999999999999998876432 3799999999999999999999999944 69999998
Q ss_pred cCCc
Q 026793 95 RHTD 98 (233)
Q Consensus 95 k~~~ 98 (233)
+...
T Consensus 262 ~~~~ 265 (284)
T 3smz_A 262 APGP 265 (284)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 7654
No 189
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=3.1e-13 Score=107.19 Aligned_cols=77 Identities=10% Similarity=0.155 Sum_probs=62.6
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCce----EEEEEEccC-C--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEE
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTV----QKVAIFEKN-G--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLH 90 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V----~kI~If~k~-~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~Lr 90 (233)
-..|+|.||++.+|+++|.++|+.||.| .+|.|..+. + .++|||+|++.++|++|++. ||+.|. + +.|+
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~-g--R~i~ 98 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG-K--RYIE 98 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS-S--CEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC-C--eEEE
Confidence 3457799999999999999999999976 577775433 2 37999999999999999996 997764 3 5888
Q ss_pred EEeecCCc
Q 026793 91 LSYSRHTD 98 (233)
Q Consensus 91 I~fSk~~~ 98 (233)
|..+..++
T Consensus 99 V~~a~~~e 106 (123)
T 2dha_A 99 LFRSTAAE 106 (123)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 88876544
No 190
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.8e-12 Score=98.27 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=49.7
Q ss_pred EEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEcc-------CCCeeEEEEeCCHHHHHHHHHHhc
Q 026793 19 LLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEK-------NGGTQALIQYPDITTAAVAKESLE 77 (233)
Q Consensus 19 LlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k-------~~~~~AFVEF~d~esA~~A~~~LN 77 (233)
-+|||.||++.+|+++|+++|++||.|+ +.+..+ ...++|||+|++.++|++|++.|+
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 3467999999999999999999999999 655432 224799999999999999999994
No 191
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=1.8e-12 Score=119.61 Aligned_cols=81 Identities=19% Similarity=0.271 Sum_probs=66.0
Q ss_pred CCCCCceEEEEEeC--CCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCC-c-cc
Q 026793 12 KELESNVLLASIEN--MQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDG-G-YC 87 (233)
Q Consensus 12 ~~~pS~VLlV~V~N--L~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~g-g-~~ 87 (233)
...|++.| ||.| |.+.+|+++|.++|++||+|++|+|... ++||||+|++.++|++|++.|||+++.+. | ..
T Consensus 14 ~~~ps~~l--~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~--kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 14 VSYATQSL--VVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp CSSCCSEE--EEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT--CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred cCCCCCEE--EEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 35667765 5888 5789999999999999999999888653 46999999999999999999999999532 1 12
Q ss_pred eEEEEeecC
Q 026793 88 KLHLSYSRH 96 (233)
Q Consensus 88 ~LrI~fSk~ 96 (233)
.|.|.|++.
T Consensus 90 ~ly~~~~~~ 98 (345)
T 3tht_A 90 TLYLNFVEK 98 (345)
T ss_dssp ECEEEECSS
T ss_pred EEEEEEeec
Confidence 577888753
No 192
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.36 E-value=1.8e-12 Score=102.27 Aligned_cols=81 Identities=17% Similarity=0.285 Sum_probs=65.7
Q ss_pred CCCceEEEEEeCCCCC--C---CHHHHHHhhccCCceEEEEEEccCC--------CeeEEEEeCCHHHHHHHHHHhcCCe
Q 026793 14 LESNVLLASIENMQYA--V---TVDVLNTVFSAFGTVQKVAIFEKNG--------GTQALIQYPDITTAAVAKESLEGHC 80 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~--V---Ted~L~~iFS~yG~V~kI~If~k~~--------~~~AFVEF~d~esA~~A~~~LNG~~ 80 (233)
++|+||. |.|+..+ + -+++|++.|++||.|++|.|.++.. .+++||+|++.++|.+|++.|||+.
T Consensus 18 ~ps~vl~--L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 18 QESTVMV--LRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp HSCCEEE--EESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCEEE--EECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 3788887 8998532 2 2688999999999999998875421 2799999999999999999999998
Q ss_pred ecCCccceEEEEeecCCcc
Q 026793 81 IYDGGYCKLHLSYSRHTDL 99 (233)
Q Consensus 81 Iy~gg~~~LrI~fSk~~~L 99 (233)
+.+ +.|+++|+...+.
T Consensus 96 f~G---R~i~v~~~~~~~f 111 (118)
T 3ue2_A 96 FAG---RKVVAEVYDQERF 111 (118)
T ss_dssp ETT---EECEEEEECHHHH
T ss_pred ECC---cEEEEEEcChHhc
Confidence 744 6999999765443
No 193
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.36 E-value=1.4e-12 Score=110.37 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=60.5
Q ss_pred CCCceEEEEEeCCCCCCCHHHHHHhhccCCce--EEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 14 LESNVLLASIENMQYAVTVDVLNTVFSAFGTV--QKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 14 ~pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V--~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
++++. |+|.||++.+|+++|+++|++||.| .+|+++.+++ .++|||+|++.++|.+|++.|||..|.+.
T Consensus 121 ~p~~~--l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 121 HPSNV--LHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCCSE--EEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CCcce--EEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 34555 5699999999999999999999999 8999887543 37999999999999999999999999765
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.35 E-value=2.3e-12 Score=111.31 Aligned_cols=83 Identities=12% Similarity=0.112 Sum_probs=71.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC--CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG--GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~--~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
...|+|.||++.+|+++|+++|+.||.|.+|.|..+.. .++|||+|.+.++|++|++ |||..|.+ +.|+|.++.
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g---~~i~v~~~~ 116 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQ---NEIIVSHLT 116 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETT---EECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCC---cEEEEEECC
Confidence 44677999999999999999999999999998876432 4799999999999999995 99998854 689999998
Q ss_pred CCcceeecC
Q 026793 96 HTDLNVKAY 104 (233)
Q Consensus 96 ~~~L~Vr~n 104 (233)
...|-|+..
T Consensus 117 ~~~l~v~nl 125 (292)
T 2ghp_A 117 ECTLWMTNF 125 (292)
T ss_dssp SCEEEEECC
T ss_pred CCEEEEECC
Confidence 888887653
No 195
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.33 E-value=5.9e-12 Score=108.37 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=65.7
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCCc-
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHTD- 98 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~~- 98 (233)
.|+|.||++.+|+++|+++|+.|| |+.+.+-. ..++|||+|.+.++|++|++.|||..|.+ +.|+|+++....
T Consensus 24 ~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~~~~~~g---~~i~v~~~~~~~~ 97 (284)
T 3smz_A 24 KILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDK--YKGTAFVTLLNGEQAEAAINAFHQSRLRE---RELSVQLQPTDAL 97 (284)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSC-EEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECCCSCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEec--CCCEEEEEeCCHHHHHHHHHHcCCCeeCC---eEEEEEecCCCCE
Confidence 467999999999999999999999 99988833 33599999999999999999999999865 689999987543
Q ss_pred ceee
Q 026793 99 LNVK 102 (233)
Q Consensus 99 L~Vr 102 (233)
|-|+
T Consensus 98 l~v~ 101 (284)
T 3smz_A 98 LCVA 101 (284)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5444
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.31 E-value=5.2e-12 Score=102.07 Aligned_cols=72 Identities=17% Similarity=0.294 Sum_probs=61.5
Q ss_pred EEEEeCCCCCCCHHHHHHhhccC----C-------ceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccce
Q 026793 20 LASIENMQYAVTVDVLNTVFSAF----G-------TVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCK 88 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~y----G-------~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~ 88 (233)
+|||.||++.+|+++|+++|++| | .|.++.+... .++|||+|.+.++|++|+ .|||..|.+ +.
T Consensus 6 ~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~--~g~afV~F~~~~~A~~Al-~l~g~~~~g---~~ 79 (198)
T 2yh0_A 6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQG---QS 79 (198)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT--TTEEEEEESCSHHHHHHG-GGTTEEETT---EE
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC--CCEEEEEeCCHHHHHHHH-HhcCCEEcC---ce
Confidence 46799999999999999999999 5 6666666444 359999999999999999 899999865 69
Q ss_pred EEEEeecCC
Q 026793 89 LHLSYSRHT 97 (233)
Q Consensus 89 LrI~fSk~~ 97 (233)
|+|.+++..
T Consensus 80 i~v~~~~~~ 88 (198)
T 2yh0_A 80 LKIRRPHDY 88 (198)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999988754
No 197
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.30 E-value=6.1e-12 Score=99.54 Aligned_cols=72 Identities=17% Similarity=0.294 Sum_probs=62.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhccC----C-------ceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccce
Q 026793 20 LASIENMQYAVTVDVLNTVFSAF----G-------TVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCK 88 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~y----G-------~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~ 88 (233)
.|+|.||++.+|+++|+++|++| | .|.++.+... .++|||+|.+.++|++|+ .|||..|.+ ++
T Consensus 6 ~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~--~g~afV~f~~~~~A~~A~-~~~~~~~~g---~~ 79 (172)
T 2g4b_A 6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQG---QS 79 (172)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT--TTEEEEEESSHHHHHHHG-GGTTCEETT---EE
T ss_pred EEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC--CCEEEEEeCCHHHHHHHH-HhCCcEecC---ce
Confidence 46799999999999999999999 6 7777777554 359999999999999999 899999865 68
Q ss_pred EEEEeecCC
Q 026793 89 LHLSYSRHT 97 (233)
Q Consensus 89 LrI~fSk~~ 97 (233)
|+|.+++..
T Consensus 80 i~v~~~~~~ 88 (172)
T 2g4b_A 80 LKIRRPHDY 88 (172)
T ss_dssp CEEECCSSC
T ss_pred eeecCCccc
Confidence 999987653
No 198
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.2e-11 Score=94.99 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=54.3
Q ss_pred CCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecCC
Q 026793 28 YAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 28 y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~~ 97 (233)
..+|+++|+++|++||.|++|.|..+ ..++|||+|++.++|+.|++.++| +.+ +.|+|+|++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~-~rGfaFVeF~~~~~A~~Ai~~~~~--~~g---~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSK-KPGTAVVEFATVKAAELAVQNEVG--LVD---NPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESS-SSSEEEEEESCHHHHHHHHHTCCB--CSS---SBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccC-CCCEEEEEECCHHHHHHHHHhcCC--CCC---CeEEEEEccCC
Confidence 46899999999999999999988743 346999999999999999999766 333 58999998765
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.28 E-value=1.1e-11 Score=107.01 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=64.0
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCee-cCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCI-YDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~I-y~gg~~~LrI~fSk 95 (233)
.|+|.||++.+|+++|+++|+.||.|++|.|..+.. .++|||+|.+.++|.+|++.||+..+ ..+..+.|+|++++
T Consensus 98 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 98 ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECC
T ss_pred cccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecc
Confidence 467999999999999999999999999998865432 37999999999999999999955444 42223689999876
Q ss_pred CC
Q 026793 96 HT 97 (233)
Q Consensus 96 ~~ 97 (233)
..
T Consensus 178 ~~ 179 (261)
T 3sde_A 178 QF 179 (261)
T ss_dssp CE
T ss_pred cc
Confidence 53
No 200
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.28 E-value=1.2e-11 Score=104.05 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=60.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
+|||.||++.+|+++|.++|++||.|.+|.|..+.. .++|||+|++.++|++|++.++ ..| +| +.|+|.+++
T Consensus 111 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~-~G--r~l~V~~~~ 185 (193)
T 2voo_A 111 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKY-KE--TDLLILFKD 185 (193)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEE-TT--EECEEEETT
T ss_pred EEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeE-CC--EEEEEEEhH
Confidence 578999999999999999999999999998875332 4799999999999999998765 455 44 688888754
No 201
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.27 E-value=2e-12 Score=103.07 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=64.2
Q ss_pred CCceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEc---cCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEE
Q 026793 15 ESNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFE---KNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHL 91 (233)
Q Consensus 15 pS~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~---k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI 91 (233)
+..-..|||.||++.+|+++|+++|+.||.|..+.|.+ ....++|||+|.+.++|++|++ |||..|.+ +.|+|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g---~~l~v 85 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG---NEIKL 85 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETT---EEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCC---eEEEE
Confidence 34455677999999999999999999999877633222 2234799999999999999995 99999975 69999
Q ss_pred EeecCC
Q 026793 92 SYSRHT 97 (233)
Q Consensus 92 ~fSk~~ 97 (233)
.+++..
T Consensus 86 ~~~~~~ 91 (175)
T 1fje_B 86 EKPKGR 91 (175)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 998754
No 202
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.26 E-value=8.8e-12 Score=98.19 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=58.8
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeec
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN----GGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSR 95 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk 95 (233)
.|||.||++.+|+++|+++|+.||.|.+|.|..+. ..++|||+|.+.++|++|++. ++.|.+ +.|+|.++.
T Consensus 5 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g---~~i~v~~~~ 79 (167)
T 2cjk_A 5 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDG---KVIDPKRAI 79 (167)
T ss_dssp EEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETT---EECCCEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCC---eEccccccc
Confidence 46799999999999999999999999999887542 247999999999999999995 445533 466666664
Q ss_pred C
Q 026793 96 H 96 (233)
Q Consensus 96 ~ 96 (233)
.
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 3
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.25 E-value=2e-12 Score=99.06 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=52.4
Q ss_pred CCCCHHHHHHhh------------ccCCceEEEEEEccCC---CeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 28 YAVTVDVLNTVF------------SAFGTVQKVAIFEKNG---GTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 28 y~VTed~L~~iF------------S~yG~V~kI~If~k~~---~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
+.+|+++|.+.| ++||+|++|.|.++.. .++|||+|++.++|++|++.|||+.|.+ +.|+|+
T Consensus 25 ~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G---r~i~v~ 101 (104)
T 1jmt_A 25 SAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG---QPIHAE 101 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT---EECCEE
T ss_pred cccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC---EEEEEE
Confidence 345666565555 9999999999976442 4799999999999999999999999854 689999
Q ss_pred ee
Q 026793 93 YS 94 (233)
Q Consensus 93 fS 94 (233)
|+
T Consensus 102 ~s 103 (104)
T 1jmt_A 102 LS 103 (104)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 204
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.21 E-value=2.4e-11 Score=99.48 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=61.8
Q ss_pred EEEEeCC----CCCCCHHHHHHhhccCCceEEEEEEccC-C---CeeEEEEeCC----HHH----HHHHHH--HhcCCee
Q 026793 20 LASIENM----QYAVTVDVLNTVFSAFGTVQKVAIFEKN-G---GTQALIQYPD----ITT----AAVAKE--SLEGHCI 81 (233)
Q Consensus 20 lV~V~NL----~y~VTed~L~~iFS~yG~V~kI~If~k~-~---~~~AFVEF~d----~es----A~~A~~--~LNG~~I 81 (233)
.|+|.|| ++.+|++.|.++|+.||+|.++.++.+. . .++|||+|.| .++ |.+|+. .|||..|
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I 83 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFI 83 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEE
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCee
Confidence 4779999 9999999999999999999999776543 3 3799999997 433 788988 8999999
Q ss_pred cCCccceEEEEeecCCc
Q 026793 82 YDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 82 y~gg~~~LrI~fSk~~~ 98 (233)
.+ ++|+|.+-+...
T Consensus 84 ~G---r~irV~ln~~g~ 97 (136)
T 2j8a_A 84 MG---FKFEVILNKHSI 97 (136)
T ss_dssp TT---EEEEEEECCTTH
T ss_pred cC---cEEEEEECcccH
Confidence 54 799999865543
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=3.2e-09 Score=81.55 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=61.0
Q ss_pred CCCceEEEEEeCCC--CCC-C---HHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccc
Q 026793 14 LESNVLLASIENMQ--YAV-T---VDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYC 87 (233)
Q Consensus 14 ~pS~VLlV~V~NL~--y~V-T---ed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~ 87 (233)
+|.-.+.|+|.+-. .+. . ..+|.+.|+.||+|..|++... .+||+|+|.++|.+|++ |||.+|.+ +
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~G---r 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLN---R 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETT---E
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCC---e
Confidence 44555667775521 112 2 3679999999999999988764 38999999999999999 99999865 6
Q ss_pred eEEEEeecCCcc
Q 026793 88 KLHLSYSRHTDL 99 (233)
Q Consensus 88 ~LrI~fSk~~~L 99 (233)
.|+|+.++.+.+
T Consensus 77 ~LkV~lkt~dW~ 88 (91)
T 2dnr_A 77 TITIALKSPSGP 88 (91)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEeCCCCcc
Confidence 999999887654
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=1.2e-08 Score=81.62 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=58.7
Q ss_pred CCCCCceEEEEEeCCCCC-CCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCC-HHHHHHHHHHhc--CCeecCCccc
Q 026793 12 KELESNVLLASIENMQYA-VTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPD-ITTAAVAKESLE--GHCIYDGGYC 87 (233)
Q Consensus 12 ~~~pS~VLlV~V~NL~y~-VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d-~esA~~A~~~LN--G~~Iy~gg~~ 87 (233)
.-+++.|| +|.||.+. +|.++|.++|+.||+|..|.+..... .|||+|.| .++|..|++.|| |..|.+ .
T Consensus 14 ~~~~G~il--~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g---~ 86 (121)
T 1owx_A 14 EEKIGCLL--KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRN---K 86 (121)
T ss_dssp SCCCCCEE--EEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTS---S
T ss_pred cccCCeEE--EEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeC---c
Confidence 33444454 59999999 99999999999999999998866544 69999999 899999999995 555543 3
Q ss_pred eEEEEe
Q 026793 88 KLHLSY 93 (233)
Q Consensus 88 ~LrI~f 93 (233)
.++++.
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 455543
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.81 E-value=4.8e-09 Score=88.14 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=60.9
Q ss_pred CCceEEEEEeCCCC-----CCCHHHHHHhhccCCceEEEEEEccC--------CCeeEEEEeCCHHHHHHHHHHhcCCee
Q 026793 15 ESNVLLASIENMQY-----AVTVDVLNTVFSAFGTVQKVAIFEKN--------GGTQALIQYPDITTAAVAKESLEGHCI 81 (233)
Q Consensus 15 pS~VLlV~V~NL~y-----~VTed~L~~iFS~yG~V~kI~If~k~--------~~~~AFVEF~d~esA~~A~~~LNG~~I 81 (233)
.++++. +.|+.. .-.+++|++.|++||+|++|.|.+.. ..+++||+|++.++|++|++.|||+.+
T Consensus 123 ~s~v~~--l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 123 ESTVMV--LRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp BCSEEE--EESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred ccccch--hhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 445554 556532 23367899999999999999887422 137999999999999999999999987
Q ss_pred cCCccceEEEEeecCCc
Q 026793 82 YDGGYCKLHLSYSRHTD 98 (233)
Q Consensus 82 y~gg~~~LrI~fSk~~~ 98 (233)
.+ +.|+++|+..++
T Consensus 201 ~g---r~i~~~~~~~~~ 214 (222)
T 3dxb_A 201 AG---RKVVAEVYDQER 214 (222)
T ss_dssp SS---SBCEEEECCHHH
T ss_pred CC---eEEEEEEcCHHH
Confidence 54 699999976544
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=4e-08 Score=75.97 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=56.6
Q ss_pred CCCCCceEEEEEeCCC---CC-CC---HHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 12 KELESNVLLASIENMQ---YA-VT---VDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 12 ~~~pS~VLlV~V~NL~---y~-VT---ed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
..+|--.+.|+|.+-. .+ .. ..+|.+.|+.||+|..|+|..+ .+||+|.|.++|.+|++ |||.+|.+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~G- 84 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKG- 84 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETT-
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeCC-
Confidence 3455556666665421 01 11 3569999999999999988765 39999999999999999 99999965
Q ss_pred ccceEEEEe
Q 026793 85 GYCKLHLSY 93 (233)
Q Consensus 85 g~~~LrI~f 93 (233)
+.|+|.+
T Consensus 85 --r~L~V~~ 91 (95)
T 1ufw_A 85 --RAVKISG 91 (95)
T ss_dssp --EEEEEEC
T ss_pred --eEEEEec
Confidence 6888876
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.8e-06 Score=68.88 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=60.0
Q ss_pred EEEeCCCCCCCHHHHHHhhccC-----CceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEE
Q 026793 21 ASIENMQYAVTVDVLNTVFSAF-----GTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLS 92 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~y-----G~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~ 92 (233)
|.+-||+..|+..-+..+...| |.|.||++..+.++ |+|||.|...|.+|.-+|||.+|-+ ++||+.
T Consensus 24 iaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G--Aivef~d~~~AgKasLaL~G~ef~g---r~Lr~g 95 (117)
T 2l9w_A 24 ICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG--AIIIFRDSKFAAKMLMILNGSQFQG---KVIRSG 95 (117)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE--EEEECSCHHHHHHHHHHHSSEEETT---EEEEEE
T ss_pred EEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc--eEEEEccchhhHHHHhhcCCeeecC---eEEEec
Confidence 4589999999999999999999 99999999877664 9999999999999999999999963 688765
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.92 E-value=2.2e-05 Score=61.52 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=59.5
Q ss_pred EEeCCCCCC-CH----HHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEeecC
Q 026793 22 SIENMQYAV-TV----DVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYSRH 96 (233)
Q Consensus 22 ~V~NL~y~V-Te----d~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fSk~ 96 (233)
+|.||+..| +. +.++.+|..|+.+.....++.-. ...|.|++.++|.+|+..|++..|.+ .+|||.|+..
T Consensus 9 iitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g---~~~r~YFgq~ 83 (104)
T 1wey_A 9 IACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLG---KEMKLYFAQT 83 (104)
T ss_dssp EEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETT---EECEEECCCC
T ss_pred EEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecC---ceeEEEecCC
Confidence 488987654 33 46689999999999988877554 47899999999999999999999976 4899999985
Q ss_pred Cc
Q 026793 97 TD 98 (233)
Q Consensus 97 ~~ 98 (233)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 211
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.84 E-value=0.00067 Score=64.87 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=38.6
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHH
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKE 74 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~ 74 (233)
|+|. ...++++++|.+.|++||.|.++.++++++ .||+|||++.+++..+++
T Consensus 56 v~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 56 VLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp EEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHS
T ss_pred EEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHh
Confidence 4565 567899999999999999999998887655 799999999999886654
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.74 E-value=0.0062 Score=48.57 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=47.3
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecC
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYD 83 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~ 83 (233)
-.+|+|-..... ..+.+.+.|++||+|+++... .+ ...-.|+|++..+|++|+.. ||..|.+
T Consensus 24 ~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~-~~-~NWihI~Y~s~~~A~rAL~k-NG~ii~g 85 (119)
T 1wwh_A 24 DTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS-NT-GNWMHIRYQSKLQARKALSK-DGRIFGE 85 (119)
T ss_dssp GGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC-SS-SSEEEEEESSHHHHHHHHTT-TTCEETT
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC-CC-CCeEEEEeCCHHHHHHHHHh-CCeEecC
Confidence 345667777554 456677789999999998762 22 23688999999999999995 9988754
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.71 E-value=0.013 Score=44.40 Aligned_cols=79 Identities=10% Similarity=0.174 Sum_probs=59.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEEEEc-cC-----CCeeEEEEeCCHHHHHHHHHHhcCCeecCCc--cceEEE
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVAIFE-KN-----GGTQALIQYPDITTAAVAKESLEGHCIYDGG--YCKLHL 91 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~-k~-----~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg--~~~LrI 91 (233)
.|.|.+|+..+|++++.+..+.+.++.-..-.. +. .-..|+|.|.+.++...=++.++|+.+.+.. ..+-.|
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~V 82 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIV 82 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEE
Confidence 567999999999999999999998754332222 11 1247999999999999999999999988752 123347
Q ss_pred EeecCCc
Q 026793 92 SYSRHTD 98 (233)
Q Consensus 92 ~fSk~~~ 98 (233)
+||-.++
T Consensus 83 E~AP~qk 89 (91)
T 1uw4_A 83 EFAPFQK 89 (91)
T ss_dssp EECSSCC
T ss_pred EEcCCCc
Confidence 7775544
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.0056 Score=47.87 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=46.8
Q ss_pred EEEEeCCCCCCCHHHHHHhhcc-C----CceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecC
Q 026793 20 LASIENMQYAVTVDVLNTVFSA-F----GTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYD 83 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~-y----G~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~ 83 (233)
.|.|+||+..+.+|.|.-.|++ - |.|++|..+. + .|+|+|.|.+.|++-++. .-+.|++
T Consensus 10 ~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~--~AvItF~d~~va~rVL~k-~~H~L~~ 73 (104)
T 2dhx_A 10 AVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--C--GGVLTFREPADAERVLAQ-ADHELHG 73 (104)
T ss_dssp EEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--T--EEEEEESSHHHHHHHHTC-SCCBSSS
T ss_pred EEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--C--cEEEEEcChHHHHHHhcC-CcceecC
Confidence 4569999999999999999998 2 7888988876 2 599999999998887764 2344443
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.53 E-value=0.0039 Score=48.53 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=44.7
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeec
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIY 82 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy 82 (233)
|++.+.+.+....+|.++|+.||.| .|.=.++ +.|||-|.+.+.|..|++.+.-...|
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fggv-~I~WidD---TsAlvvf~~~~~a~~al~~i~~~~~y 65 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD---TSAFVSLSQPEQVKIAVNTSKYAESY 65 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEEE-EEEEEET---TEEEEEEEEECHHHHHHHHHTTCSSC
T ss_pred EEEEeCChhhhhHHHHHHHhccCCE-EEEEEcC---CeEEEEecCHHHHHHHHHhcccCCce
Confidence 4444888899999999999999943 2333333 36999999999999999998655444
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.35 E-value=0.0085 Score=46.58 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=43.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCC
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGH 79 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~ 79 (233)
||. | +.+.+....||.++|+.||.| .|.=.++ +.|||-|.+.+.|..|++.++-.
T Consensus 18 Vf~--l-~FP~ewKt~DI~~lFs~fggv-~I~WidD---TsAlvvf~~~~~a~~al~~i~k~ 72 (100)
T 1whv_A 18 VLH--V-TFPKEWKTSDLYQLFSAFGNI-QISWIDD---TSAFVSLSQPEQVQIAVNTSKYA 72 (100)
T ss_dssp EEE--E-ECCTTCCHHHHHHHHTTTCSC-CCEEEET---TEEEEECSCHHHHHHHHHHHHHC
T ss_pred EEE--E-eCChhhhhHHHHHHhhccCCE-EEEEEcC---CeEEEEecCHHHHHHHHHhcccC
Confidence 554 3 888899999999999999954 2333343 36999999999999999988633
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.58 E-value=0.077 Score=40.82 Aligned_cols=78 Identities=10% Similarity=0.141 Sum_probs=57.0
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccC------C-CeeEEEEeCCHHHHHHHHHHhcCCeecCCc--cce
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKN------G-GTQALIQYPDITTAAVAKESLEGHCIYDGG--YCK 88 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~------~-~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg--~~~ 88 (233)
.|.|.|++|+..+|++++.+.++.+-.+.- .-|... . -..|+|.|.+.++...=.+..+|+.+.+.. ..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~-~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDY-FEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEE-CCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccce-EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 466779999999999999999888755321 112111 1 136999999999999999999999988752 224
Q ss_pred EEEEeecC
Q 026793 89 LHLSYSRH 96 (233)
Q Consensus 89 LrI~fSk~ 96 (233)
-.|+||-.
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 55777643
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.26 E-value=0.058 Score=42.07 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=25.7
Q ss_pred cCCCeeEEEEeCCHHHHHHHHHHhcCCeecCC
Q 026793 53 KNGGTQALIQYPDITTAAVAKESLEGHCIYDG 84 (233)
Q Consensus 53 k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~g 84 (233)
.+..++|||+|.+.++|++|++.+++....++
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~ 41 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG 41 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCC
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCC
Confidence 33458999999999999999999987654443
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.21 E-value=0.076 Score=41.34 Aligned_cols=38 Identities=11% Similarity=0.040 Sum_probs=32.9
Q ss_pred CeeEEEEeCCHHHHHHHHHHh-cCCeecCCccceEEEEeecCC
Q 026793 56 GTQALIQYPDITTAAVAKESL-EGHCIYDGGYCKLHLSYSRHT 97 (233)
Q Consensus 56 ~~~AFVEF~d~esA~~A~~~L-NG~~Iy~gg~~~LrI~fSk~~ 97 (233)
.++++|||.+.++|++|++.| ||..|.+ .|++++++.+
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G----~~~~~~a~~~ 51 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG----EWTYDDATKT 51 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC----EEEEETTTTE
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC----ceecccccCc
Confidence 479999999999999999999 9998843 7888887654
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.05 E-value=0.25 Score=40.01 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=44.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEE-EEEc------------cC-----CCeeEEEEeCCHHHHHHHHHHhcCCee
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKV-AIFE------------KN-----GGTQALIQYPDITTAAVAKESLEGHCI 81 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI-~If~------------k~-----~~~~AFVEF~d~esA~~A~~~LNG~~I 81 (233)
.|+|-.-+. -....+-+.|++||+|++- .+.+ ++ +..-..|.|++..+|.+|++. ||..|
T Consensus 9 ~VtVFGFp~-~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPE-TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVF 86 (132)
T ss_dssp EEEEECCCG-GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEE
T ss_pred EEEEEecCH-HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEe
Confidence 344666543 3445566789999999872 1111 00 122468999999999999995 99876
Q ss_pred cCCccceEEEE
Q 026793 82 YDGGYCKLHLS 92 (233)
Q Consensus 82 y~gg~~~LrI~ 92 (233)
++ +-|-|.
T Consensus 87 -~G--~mIGV~ 94 (132)
T 3p3d_A 87 -NG--VLLGVI 94 (132)
T ss_dssp -TT--EECEEE
T ss_pred -Cc--EEEEEE
Confidence 54 355544
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.35 E-value=1.5 Score=41.87 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=43.7
Q ss_pred CceEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCC
Q 026793 16 SNVLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGH 79 (233)
Q Consensus 16 S~VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~ 79 (233)
++||. |. ....+...+|.++|+.||.| +|.-..++ .|||.|.+.+.|..++++++..
T Consensus 440 ~~vl~--v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLH--VT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEE--EE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEE--Ee-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHhC
Confidence 34665 44 55677899999999999964 44444443 4999999999999999998643
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=46.58 E-value=23 Score=24.29 Aligned_cols=58 Identities=3% Similarity=0.101 Sum_probs=35.3
Q ss_pred CCCHHHHHHhhccCCc-----eEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEee
Q 026793 29 AVTVDVLNTVFSAFGT-----VQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSYS 94 (233)
Q Consensus 29 ~VTed~L~~iFS~yG~-----V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~fS 94 (233)
.++..+|-..+..-+. |-+|.|+++ ++||+-... .|..+++.|++..+.+ .+++|+.+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~----~s~v~v~~~-~~~~~~~~l~~~~i~g---~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN----ASYVEILNG-KGPHVLKVMKNTTVKG---KQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS----CEEEEECTT-CHHHHHHHHTTCCC------CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC----cEEEEECHH-HHHHHHHHhccccCcC---ceEEEEEC
Confidence 4555555554444443 456677654 688888765 6888999999988865 36666654
No 223
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=38.45 E-value=19 Score=32.74 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=24.1
Q ss_pred EEEeCCCCCCCHHHHHHhhcc---------CCceEEEEEEc
Q 026793 21 ASIENMQYAVTVDVLNTVFSA---------FGTVQKVAIFE 52 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~---------yG~V~kI~If~ 52 (233)
..|.||+|.+++..|.+++.. ||.+.-+.++.
T Consensus 145 ~vvaNLPYnIstpil~~ll~~~~~~~~l~~~~~~~m~lmvQ 185 (353)
T 1i4w_A 145 LTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMP 185 (353)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEEEEEEEE
T ss_pred EEEEECCCchHHHHHHHHHHhccccccccccCcceEEEEeE
Confidence 469999999999999988864 56554445554
No 224
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=35.14 E-value=19 Score=31.28 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=24.7
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEE
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAI 50 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~I 50 (233)
+.|.||+|.++...|..++..-..+.++++
T Consensus 117 ~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 117 RIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp EEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred EEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 459999999999999999987666766644
No 225
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=34.91 E-value=85 Score=19.74 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=39.5
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHh
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESL 76 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~L 76 (233)
.+.+.|.++.-.--...+.+.+.+...|.++.+--... .+.|+|++..+...-++.+
T Consensus 3 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~~i~~~i 59 (69)
T 4a4j_A 3 TINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALE--QAVVSYHGETTPQILTDAV 59 (69)
T ss_dssp EEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTT--EEEEEECTTCCHHHHHHHH
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC--EEEEEECCCCCHHHHHHHH
Confidence 45677899876666788899999998899887754433 5788886544444433333
No 226
>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A
Probab=34.59 E-value=46 Score=27.27 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=29.9
Q ss_pred CCCCHHHHHHhhccCCc-eEEEEEEc-cCCCeeEEEEeC
Q 026793 28 YAVTVDVLNTVFSAFGT-VQKVAIFE-KNGGTQALIQYP 64 (233)
Q Consensus 28 y~VTed~L~~iFS~yG~-V~kI~If~-k~~~~~AFVEF~ 64 (233)
-+.|.|-|.+++..+|. |++|+|.+ +.+.++|-+.+.
T Consensus 66 RPlThDLl~~il~~lg~~v~~V~I~~l~dgtfyA~L~l~ 104 (164)
T 1vjl_A 66 RPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYATLVIR 104 (164)
T ss_dssp SCCHHHHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHcCCEEEEEEEEEeECCEEEEEEEEe
Confidence 47889999999999985 78888876 444578888888
No 227
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=31.50 E-value=18 Score=26.75 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=14.0
Q ss_pred CceEEEEEEccCCCeeEEEEeCCHH
Q 026793 43 GTVQKVAIFEKNGGTQALIQYPDIT 67 (233)
Q Consensus 43 G~V~kI~If~k~~~~~AFVEF~d~e 67 (233)
|+|++|... +.++||+|+|..
T Consensus 45 GTI~kV~~~----~e~ClV~F~D~S 65 (79)
T 2m0o_A 45 GTIKKVDSA----REVCLVQFEDDS 65 (79)
T ss_dssp EEEEEEETT----TTEEEEEETTSC
T ss_pred EEEEEeccC----CCEEEEEEcCCC
Confidence 777765432 236999998853
No 228
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=31.17 E-value=37 Score=29.32 Aligned_cols=29 Identities=10% Similarity=0.421 Sum_probs=24.0
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEEE
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVAI 50 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~I 50 (233)
+.|.|++|.++...|+.++.. ..+.++++
T Consensus 113 ~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 113 LLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp EEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred EEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 469999999999999999987 66666543
No 229
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=30.37 E-value=11 Score=28.83 Aligned_cols=27 Identities=7% Similarity=0.016 Sum_probs=0.0
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCeecC
Q 026793 57 TQALIQYPDITTAAVAKESLEGHCIYD 83 (233)
Q Consensus 57 ~~AFVEF~d~esA~~A~~~LNG~~Iy~ 83 (233)
.++|++|+|...+..|++.++|....+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g 31 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMG 31 (135)
T ss_dssp ---------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCC
Confidence 478999999999999999999876544
No 230
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.29 E-value=19 Score=25.86 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=13.5
Q ss_pred CceEEEEEEccCCCeeEEEEeCCH
Q 026793 43 GTVQKVAIFEKNGGTQALIQYPDI 66 (233)
Q Consensus 43 G~V~kI~If~k~~~~~AFVEF~d~ 66 (233)
|+|++|... +..+||+|+|-
T Consensus 28 GtV~kV~~~----~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDSA----REVCLVQFEDD 47 (68)
T ss_dssp EEEEEEETT----TTEEEEEETTT
T ss_pred eEEEEEecC----CcEEEEEEccC
Confidence 777776532 23699999885
No 231
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=28.30 E-value=1.2e+02 Score=19.55 Aligned_cols=55 Identities=7% Similarity=0.035 Sum_probs=39.7
Q ss_pred eEEEEEeCCCCCCCHHHHHHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHH
Q 026793 18 VLLASIENMQYAVTVDVLNTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKES 75 (233)
Q Consensus 18 VLlV~V~NL~y~VTed~L~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~ 75 (233)
.+.+.|.++.-.--...+.+.+.+ -.|.++.+--.. ..+-|+|++.++-..|++.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~--~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE--AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE--EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC--CEEEEEECCHHHHHHHHHH
Confidence 356679999877778889999999 889888774332 3578999855555556665
No 232
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=25.46 E-value=63 Score=24.92 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=24.6
Q ss_pred eeEEEEeCCHHHHHHHHHHhcCCeecCCccceEEEEe
Q 026793 57 TQALIQYPDITTAAVAKESLEGHCIYDGGYCKLHLSY 93 (233)
Q Consensus 57 ~~AFVEF~d~esA~~A~~~LNG~~Iy~gg~~~LrI~f 93 (233)
++|.|.|.+.++-..|++.|-+++ ..+|.|+.
T Consensus 47 gqamirfqnsdeqrlaiqkllnhn-----nnklqiei 78 (129)
T 4eyt_A 47 GQAMIRFQNSDEQRLAIQKLLNHN-----NNKLQIEI 78 (129)
T ss_dssp SCEEEEESSHHHHHHHHHHHEETT-----TTEEEEEE
T ss_pred CeeEEEecCChHHHHHHHHHHhcC-----CCEEEEEE
Confidence 589999999999999999886543 13555554
No 233
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=24.46 E-value=28 Score=29.66 Aligned_cols=29 Identities=17% Similarity=0.444 Sum_probs=24.8
Q ss_pred EEeCCCCCCCHHHHHHhhccCCceEEEEE
Q 026793 22 SIENMQYAVTVDVLNTVFSAFGTVQKVAI 50 (233)
Q Consensus 22 ~V~NL~y~VTed~L~~iFS~yG~V~kI~I 50 (233)
.|.|++|.++...|..++.....+.++++
T Consensus 100 vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 100 VVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred EEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 69999999999999999987777766644
No 234
>3ofh_A LDLR chaperone MESD; molecular chaperone, protein folding, YWTD propeller; 2.01A {Mus musculus}
Probab=22.73 E-value=2.4e+02 Score=21.02 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=41.4
Q ss_pred CCCCCCceEEEEEeCCCCCCCHHH---H-----HHhhccCCceEEEEEEccCCCeeEEEEeCCHHHHHHHHHHhcCCe
Q 026793 11 KKELESNVLLASIENMQYAVTVDV---L-----NTVFSAFGTVQKVAIFEKNGGTQALIQYPDITTAAVAKESLEGHC 80 (233)
Q Consensus 11 ~~~~pS~VLlV~V~NL~y~VTed~---L-----~~iFS~yG~V~kI~If~k~~~~~AFVEF~d~esA~~A~~~LNG~~ 80 (233)
+.....+.|-+||. +.-+.|+++ | -.||+..=.+++-.| +.+ .+.+.|.|-..|..|++-|-.++
T Consensus 3 k~sKkgkt~M~FV~-v~g~~t~~e~e~it~~WqtsL~Nnhi~~~ry~I-~~d---r~ifm~~DGs~awe~kdFL~~Q~ 75 (89)
T 3ofh_A 3 HMTKKGKTLMMFVT-VSGNPTEKETEEITSLWQGSLFNANYDVQRFIV-GSD---RAIFMLRDGSYAWEIKDFLVSQD 75 (89)
T ss_dssp -CCCCSSCEEEEEE-ESSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEC-STT---EEEEEESCGGGHHHHHHHHHTST
T ss_pred ccccCCCeEEEEEE-ecCCCCHHHHHHHHHHHHHHHHhCCceEEEEEe-cCC---EEEEEEcChHHHHHHHHHHHcCc
Confidence 44555665555555 234445442 2 357877755554333 443 49999999999999999997664
No 235
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=22.20 E-value=72 Score=26.97 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=23.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhccCCceEEEE
Q 026793 20 LASIENMQYAVTVDVLNTVFSAFGTVQKVA 49 (233)
Q Consensus 20 lV~V~NL~y~VTed~L~~iFS~yG~V~kI~ 49 (233)
.+.|.|++|.++...|.+++...-.+.+++
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~ 121 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMH 121 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEE
Confidence 356999999999999999887654555543
No 236
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=21.40 E-value=71 Score=29.83 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=27.6
Q ss_pred HHHhh--ccCCceEEEEE--EccCC-CeeEEEEeCCHHHHHHHHHH
Q 026793 35 LNTVF--SAFGTVQKVAI--FEKNG-GTQALIQYPDITTAAVAKES 75 (233)
Q Consensus 35 L~~iF--S~yG~V~kI~I--f~k~~-~~~AFVEF~d~esA~~A~~~ 75 (233)
|..+| +.+|-|.++++ +.... ...+++.|.+.++|..|++.
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~~ 263 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDA 263 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHH
Confidence 45666 57999999865 33322 13578999998887765443
No 237
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.81 E-value=16 Score=25.92 Aligned_cols=10 Identities=20% Similarity=0.477 Sum_probs=7.9
Q ss_pred eeEEEEeCCH
Q 026793 57 TQALIQYPDI 66 (233)
Q Consensus 57 ~~AFVEF~d~ 66 (233)
..+||+|+|-
T Consensus 36 ~~ClV~FeD~ 45 (63)
T 2e5q_A 36 QSCLVTFEDN 45 (63)
T ss_dssp SEEEEEETTS
T ss_pred CEEEEEEccC
Confidence 4699999885
No 238
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=20.61 E-value=81 Score=30.57 Aligned_cols=46 Identities=7% Similarity=0.222 Sum_probs=33.9
Q ss_pred HHHHHhh----ccCCceEEEEE--EccCC-CeeEEEEeCCHHHHHHHHHHhcC
Q 026793 33 DVLNTVF----SAFGTVQKVAI--FEKNG-GTQALIQYPDITTAAVAKESLEG 78 (233)
Q Consensus 33 d~L~~iF----S~yG~V~kI~I--f~k~~-~~~AFVEF~d~esA~~A~~~LNG 78 (233)
-+|..+| +.+|-|.++++ +.... ...+++.|.|.++|..|+..|-.
T Consensus 358 yDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~ 410 (658)
T 4bby_A 358 PDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAK 410 (658)
T ss_dssp SCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHH
Confidence 3677777 38999999865 33322 24688999999999999887643
No 239
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=20.48 E-value=39 Score=23.58 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=13.0
Q ss_pred CceEEEEEEccCCCeeEEEEeCCHH
Q 026793 43 GTVQKVAIFEKNGGTQALIQYPDIT 67 (233)
Q Consensus 43 G~V~kI~If~k~~~~~AFVEF~d~e 67 (233)
|+|++|.. . ...+||+|+|-.
T Consensus 22 GtI~~V~~--~--~~~clV~F~D~s 42 (58)
T 4hcz_A 22 GTIKKVDS--A--REVCLVQFEDDS 42 (58)
T ss_dssp EEEEEEET--T--TTEEEEEETTSC
T ss_pred EEEEEEec--C--CCEEEEEEcCCC
Confidence 66655432 2 236999998853
No 240
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=20.08 E-value=58 Score=27.43 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=23.5
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCceEEEE
Q 026793 21 ASIENMQYAVTVDVLNTVFSAFGTVQKVA 49 (233)
Q Consensus 21 V~V~NL~y~VTed~L~~iFS~yG~V~kI~ 49 (233)
+.|.|++|.++...|+.++.....+.+++
T Consensus 98 ~vv~NlPy~i~~~il~~ll~~~~~~~~~~ 126 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTVYNKDCVPLAV 126 (249)
T ss_dssp EEEEECCTTTHHHHHHHHHHTGGGCSEEE
T ss_pred EEEEECchhccHHHHHHHHhcCCCCceEE
Confidence 57999999999999999998665555543
Done!