BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026794
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1A PE=3 SV=1
Length = 328
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 11/127 (8%)
Query: 13 SIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDY 67
S E + L G + +K ++ +EE +LV S + A+ + + + V + VG + Y
Sbjct: 150 SAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIKPY 209
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GAFI + ++GL+H+SE+S D I + N DE++V +I +D E+ RI+LS
Sbjct: 210 GAFIDIG------GVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLST 263
Query: 128 KQLEEDP 134
KQLE +P
Sbjct: 264 KQLEPEP 270
>sp|Q89AJ3|RS1_BUCBP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rpsA PE=3 SV=2
Length = 566
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 76/133 (57%), Gaps = 18/133 (13%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNV------EDIFVG------RDYG 68
L G + KVI+ +++ +V S + + ++Y++ N+ E + V DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDEV++K++K DREK R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRVSLGLK 260
Query: 129 QLEEDPLLETLEK 141
QL +DP + E+
Sbjct: 261 QLSDDPWTKISER 273
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH S++ V ++ +EE +++ K W ++S + N VG+
Sbjct: 313 NKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNPWMEFSKKYNKGSHVVGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW++ ++ +G+EV V+++D ++
Sbjct: 373 SITDFGIFIGLEGS-----IDGLVHLSDISWNISGEESVKKYKKGEEVLAVVLQVDPDRE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQL+EDP
Sbjct: 428 RISLGIKQLQEDPF 441
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + +K+++ + E ++ K D W K S R + GR DYG F+ +
Sbjct: 238 GDEVKIKILKFDREKIRVSLGLKQLSDDPWTKISERYPEKTKITGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ V+V ++ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKN 351
Query: 133 DPLLE 137
+P +E
Sbjct: 352 NPWME 356
>sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea
GN=RPS1 PE=1 SV=1
Length = 411
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 27/172 (15%)
Query: 26 ISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRFPDGLY 80
I +K ++ +EE +LV S + A+ + +++ + + G + YGAFI +
Sbjct: 229 IPLKFVEVDEEQSRLVMSNRKAMADS-QAQLGIGSVVTGTVQSLKPYGAFIDIG------ 281
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP------ 134
+ GL+HVS++S D + DI +L GD ++V ++ DRE+ R++LS K+LE P
Sbjct: 282 GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRN 341
Query: 135 ---LLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGI 183
+ E E++ I+ + +M+ ++ +P GL L DGI
Sbjct: 342 PKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGL------TLSSDGI 387
>sp|P14128|RS1_PROSP 30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3
SV=1
Length = 378
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 42 LEGKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDQLLENLQEGMEVKGIVKNLTDYG 101
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 102 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLK 155
Query: 129 QLEEDP 134
QL EDP
Sbjct: 156 QLGEDP 161
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 30 VIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYH 81
V+ +EE +++ K W +++ N D G+ D+G FI L
Sbjct: 227 VLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLEGG----- 281
Query: 82 LTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETL 139
+ GLVH+S++SW++ + +R+ +GDE+ V+++D E+ RI+L +KQL EDP L
Sbjct: 282 IDGLVHLSDISWNVAGEEAVRE-YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYL 340
Query: 140 EKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
+ G++++ + + T+E G+
Sbjct: 341 --AATKKGAIVTGKVTAVDAKGATVELTLGV 369
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 133 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 192
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 193 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKS 246
Query: 133 DP 134
+P
Sbjct: 247 NP 248
>sp|P37985|RS1_DICD3 30S ribosomal protein S1 OS=Dickeya dadantii (strain 3937) GN=rpsA
PE=3 SV=2
Length = 557
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP L + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLS--VNKKGAIVTGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+ V+Q + E +++ K +N Y S I G+ GA + L
Sbjct: 412 GDEIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVEL- 470
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
DG+ G + SE S D I+D +++ GDE+ K +DR+ ++LSI+ +E
Sbjct: 471 -ADGV---EGYLRASEASRDRIEDATLVMSVGDEIEAKYTGVDRKNRVVSLSIRAKDE 524
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1
Length = 557
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVTGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA
PE=1 SV=1
Length = 557
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVTGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=rpsA PE=3 SV=1
Length = 557
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVTGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3
SV=1
Length = 557
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VKV+K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRD 101
W +++ N D G+ D+G FI L DG + GLVH+S++SW++ + +R+
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGL---DG--GIDGLVHLSDISWNVAGEEAVRE 408
Query: 102 ILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
+GDE+ V+++D E+ RI+L +KQL EDP + + + G++++ + +
Sbjct: 409 -YKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWV--ALNKKGAIVTGKVTAVDAKG 465
Query: 162 NTIEPLPGL 170
T+E G+
Sbjct: 466 ATVELADGV 474
Score = 37.4 bits (85), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 68 GAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127
GA + L DG+ G + SE S D ++D +L+ GDEV K +DR+ I+LS+
Sbjct: 465 GATVEL--ADGV---EGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSV 519
Query: 128 KQLEEDPLLETLEKVIPQDGSVISDSS 154
+ +E + + V Q+ + S+++
Sbjct: 520 RAKDEADEKDAIATVNKQEDANFSNNA 546
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I+VKV++ + E ++ K + W + R GR DYG F+ +
Sbjct: 238 GDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++N GD V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKA 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>sp|Q83E09|RS1_COXBU 30S ribosomal protein S1 OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rpsA PE=1 SV=1
Length = 551
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W ++ D+LN GDEV VKV+K DR+K R++L
Sbjct: 200 DYGAFVDLGGVDGLLHIT------DMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSL 253
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL +DP + +E+ P + V ++++
Sbjct: 254 GMKQLADDPWAK-IERRYPVNSRVFGKVTNIT 284
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 16/139 (11%)
Query: 12 KSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR--- 65
K+IH +G + V V++ +EE +++ K W +++ + ++ G+
Sbjct: 310 KNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHEKDEKITGKVRS 369
Query: 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L + GLVH+S++SW + IR+ +GDEV+ ++ ID E+
Sbjct: 370 ITDFGMFIGLE-----GDIDGLVHLSDISWTESGEEAIRN-YKKGDEVQAVILGIDPERE 423
Query: 122 RITLSIKQLEEDPLLETLE 140
RI+L IKQLE DP +E +E
Sbjct: 424 RISLGIKQLEGDPFMEFVE 442
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VKV++ + + K++ K D W K R V G+ DYG F+ L
Sbjct: 234 GDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNITDYGCFVKLE 293
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVH SE+ W ++I ++ G+EV V V++ID E+ RI+L IKQ +
Sbjct: 294 -----EGVEGLVHTSELDW-TNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKR 347
Query: 133 DPLLETLEK 141
+P E EK
Sbjct: 348 NPWQEFAEK 356
Score = 37.4 bits (85), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131
+ G + +++ ++D ++D+ LN GDEV VK++ +DR+ I +S K +E
Sbjct: 469 QVLGQMRLADYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVE 519
>sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpsA PE=3
SV=1
Length = 559
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T +++W I+ +I+N GDE+ VKV+K DRE++R++L
Sbjct: 204 DYGAFVDLGGVDGLLHIT------DMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNRVSL 257
Query: 126 SIKQLEEDP 134
+KQL EDP
Sbjct: 258 GLKQLGEDP 266
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V+V+ +EE +++ K W +SS+ N D G
Sbjct: 313 NKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKSNPWEDFSSQFNKGDRISGTIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L DG + GLVH+S++SW+ + ++ +GDE+ ++ +D E+
Sbjct: 373 SITDFGIFIGL---DG--GIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLE+DP
Sbjct: 428 RISLGIKQLEDDPF 441
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F L + GLVHVSE+ W ++I ++ GDEV V+V+ ID E+ RI
Sbjct: 289 DYGCFAELE-----EGVEGLVHVSEMDW-TNKNIHPSKVVQVGDEVEVQVLDIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L IKQ + +P
Sbjct: 343 SLGIKQCKSNP 353
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEK 141
+ G++ SE+S D ++D R++L EG+EV K+I IDR+ I+LS+K + D + +++
Sbjct: 474 IEGILKASEISRDRVEDARNVLKEGEEVEAKIISIDRKSRVISLSVKSKDVDDEKDAMKE 533
Query: 142 VIPQD 146
+ Q+
Sbjct: 534 LRKQE 538
>sp|P57395|RS1_BUCAI 30S ribosomal protein S1 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpsA PE=3 SV=1
Length = 558
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + ++V+ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHVKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ +K++K DRE++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINIKILKFDRERTRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDI-LNEGDEVRVKVIKIDREKSRIT 124
D+G FI L + GLVH+S++SW + + + + DE+ V+++D E+ RI+
Sbjct: 376 DFGIFIGLNGG-----IDGLVHLSDISWTIPGEEAVVKYKKNDEISAVVLQVDAERERIS 430
Query: 125 LSIKQLEEDPL 135
L IKQLEEDP
Sbjct: 431 LGIKQLEEDPF 441
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I++K+++ + E ++ K + W S R E GR DYG F+ +
Sbjct: 238 GDEINIKILKFDRERTRVSLGLKQLGEDPWIAISKRYPEETKLSGRVTNLTDYGCFVEIE 297
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GLVHVSE+ W ++I ++ D V V V+ ID E+ RI+L +KQ +
Sbjct: 298 -----EGVEGLVHVSEMDW-TNKNIHPSKVVTVNDVVEVMVLDIDEERRRISLGLKQCKI 351
Query: 133 DP 134
+P
Sbjct: 352 NP 353
>sp|P50889|RS1_LEULA 30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2
Length = 429
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 8/105 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ L DGL VHVSE+S D +++ D+L +GD+V VK++ +D EK RI+L
Sbjct: 243 DFGAFVDLGGVDGL------VHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISL 296
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
SIK + P E +++ GSV+ + +E LPG+
Sbjct: 297 SIKATQRGPWDEAADQIAA--GSVLEGTVKRVKDFGAFVEILPGI 339
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + VK++ + E ++ S K W++ + ++ + G +D+GAF+ +
Sbjct: 277 GDKVDVKILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEI- 335
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++L GD+V+VKV+ I + RI+LS+K LEE P
Sbjct: 336 ----LPGIEGLVHVSQISNKRIENPSEVLKSGDKVQVKVLDIKPAEERISLSMKALEEKP 391
>sp|Q1RJH1|RS1_RICBR 30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C)
GN=rpsA PE=3 SV=1
Length = 572
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 14/124 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKD---AVWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
+ V VI+ NEE K++ K W K V G+ DYG FI L+ D
Sbjct: 257 VKVMVIKFNEETKRISLGMKQLDYNPWEKIKEEFPVGKKMTGKVTNFADYGVFIELK--D 314
Query: 78 GLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
GL GLVH SE+SW Q+ R L G EV V+++D EK R++LSIKQ +++PL+
Sbjct: 315 GL---EGLVHSSEISWLKSNQNPRKTLTIGQEVEFMVLEVDTEKHRVSLSIKQCQQNPLI 371
Query: 137 ETLE 140
+ E
Sbjct: 372 KFAE 375
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL HLT ++SW + ++L +V+V VIK + E RI+L
Sbjct: 220 DYGAFIDLGSVDGLLHLT------DISWARVNHPSEVLEFNQKVKVMVIKFNEETKRISL 273
Query: 126 SIKQLEEDP 134
+KQL+ +P
Sbjct: 274 GMKQLDYNP 282
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G F+ L +L G++H +++W D ++ +GDEV KV+ I+ EK +I+
Sbjct: 392 DFGIFVALS-----DNLDGMIHEGDITWEDNGNELLKTYKKGDEVECKVLTINIEKEQIS 446
Query: 125 LSIKQLEEDP 134
L IKQL +P
Sbjct: 447 LGIKQLTPNP 456
>sp|Q44653|RS1_BUCAP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=rpsA PE=3 SV=1
Length = 559
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 18/126 (14%)
Query: 21 LTGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKYSSRVNVEDIFVG-RDYG 68
L G + KVI+ +++ +V S E+D + + ++ I DYG
Sbjct: 147 LEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLESLQEGIEIKGIVKNLTDYG 206
Query: 69 AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
AF+ L DGL H+T +++W ++ +I+N GDE+ VK++K D+E++R++L +K
Sbjct: 207 AFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEINVKILKFDKERTRVSLGLK 260
Query: 129 QLEEDP 134
QL EDP
Sbjct: 261 QLGEDP 266
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAVWNKYS--SRVNVEDIFVG---- 64
K+IH +I+ V V+ +EE +++ K N + S + + I V
Sbjct: 313 NKNIHPSKVVAVNNIVDVIVLDIDEERRRISLGLKQCKINPWQEFSETHKKGIHVSGKIK 372
Query: 65 --RDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKS 121
D+G FI L+ + GLVH+S++SW + ++ +GDE+ V+++D E+
Sbjct: 373 SITDFGIFIGLKGG-----IDGLVHLSDISWKISGEEAVKNYKKGDEISAVVLQVDAERE 427
Query: 122 RITLSIKQLEEDPL 135
RI+L IKQLEEDP
Sbjct: 428 RISLGIKQLEEDPF 441
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 24/130 (18%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEKD-------AVWNKYSSRVNVEDIFVGR-----DYGA 69
G I+VK+++ ++E ++ K A+ N+Y + + GR DYG
Sbjct: 237 VGDEINVKILKFDKERTRVSLGLKQLGEDPWIAISNRYPEGIKLS----GRVTNLTDYGC 292
Query: 70 FIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSI 127
F+ + + GLVHVSE+ W ++I ++ + V V V+ ID E+ RI+L +
Sbjct: 293 FVEIE-----EGVEGLVHVSEMDW-TNKNIHPSKVVAVNNIVDVIVLDIDEERRRISLGL 346
Query: 128 KQLEEDPLLE 137
KQ + +P E
Sbjct: 347 KQCKINPWQE 356
>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsA PE=1 SV=1
Length = 400
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I VK++ NEE ++ S K V W+ ++ D+ G D+GAF+ +
Sbjct: 240 GEEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV- 298
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
L + GLVHVS++S I++ ++ L G EV+VKV++++ + R++LSIK LEE P
Sbjct: 299 ----LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
Query: 135 LLETLEK 141
E +K
Sbjct: 355 AQEEGQK 361
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDE 108
++ V D+ G+ +GAFI L DGL HLT E+S + + ++ G+E
Sbjct: 189 GKLAVGDVVTGKVARITSFGAFIDLGGVDGLVHLT------ELSHERNVSPKSVVTVGEE 242
Query: 109 VRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLP 168
+ VK++ ++ E+ R++LS+K P + +E+ + + G V+ + + +E LP
Sbjct: 243 IEVKILDLNEEEGRVSLSLKATVPGP-WDGVEQKLAK-GDVVEGTVKRLTDFGAFVEVLP 300
Query: 169 GLGAI 173
G+ +
Sbjct: 301 GIDGL 305
>sp|P46228|RS1_SYNP6 30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4
Length = 307
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 11/119 (9%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVG-----RDYGAFIHLRF 75
L G + +K ++ +E+ +LV S + A+ + +R+ V ++ VG + YGAFI +
Sbjct: 159 LVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIG- 217
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
++GL+H+SE+S D I+ + N DEV+V +I +D E+ RI+LS KQLE +P
Sbjct: 218 -----GVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQLEPEP 271
>sp|Q48082|RS1_HAEIN 30S ribosomal protein S1 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rpsA PE=3 SV=1
Length = 549
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
+YGAF+ L DGL H+T +++W ++ +I+N GDEV VKV+K D++++R++L
Sbjct: 204 EYGAFVDLGGVDGLLHIT------DMAWKRVKHPSEIVNVGDEVTVKVLKFDKDRTRVSL 257
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 258 GLKQLGQDP 266
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 11 QKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-- 65
K+IH G + V V++ +EE +++ K W +++ N D G+
Sbjct: 313 NKNIHPSKVVSLGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKGDKVTGKIK 372
Query: 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--QDIRDILNEGDEVRVKVIKIDREK 120
D+G FI L + GLVH+S++SW + + +R +GDEV V+ +D K
Sbjct: 373 SITDFGIFIGLEGG-----IDGLVHLSDISWSISGEEAVRQ-YKKGDEVSAVVLAVDAVK 426
Query: 121 SRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
RI+L IKQLEEDP + I + G+V+S + + + +E G+
Sbjct: 427 ERISLGIKQLEEDPFNNFV--AINKKGAVVSATVVEADAKGAKVELAGGV 474
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYG F+ + L + GLVHVSE+ W ++I +++ GD V V V++ID E+ RI
Sbjct: 289 DYGCFVEI-----LDGVEGLVHVSEMDW-TNKNIHPSKVVSLGDTVEVMVLEIDEERRRI 342
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 343 SLGLKQCKANP 353
>sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ispH PE=3 SV=1
Length = 642
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Query: 46 DAVWNKYSSRVNVE-DIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILN 104
+ VWNK VE ++ D+GAF+ + DGL +HVSE+SW ++ D+L
Sbjct: 475 ETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGL------LHVSEISWGRVEKPADVLK 528
Query: 105 EGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
GD+++V V+ +D+E +++LS+K+L E+P
Sbjct: 529 IGDKIKVYVLSVDKENKKLSLSVKKLTENP 558
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 13/118 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G I V V+ ++E KKL S K WN + V + +G+ D+GAF+ L
Sbjct: 530 GDKIKVYVLSVDKENKKLSLSVKKLTENPWNNVEEKYPVGSVVLGKVIRFADFGAFVKLE 589
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
P + GLVH+SE+S I D LN G+E++ K++++ E+ +I LSI+++EE
Sbjct: 590 -PG----VDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSIREVEE 642
>sp|Q4ULF1|RS1_RICFE 30S ribosomal protein S1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rpsA PE=3 SV=1
Length = 568
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYG FI LR DGL GLVH SE+SW Q+ R L G EV V+++D EK R++
Sbjct: 302 DYGVFIELR--DGL---EGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVS 356
Query: 125 LSIKQLEEDPLLETLE 140
LSIKQ +E+PL++ E
Sbjct: 357 LSIKQCQENPLIKFAE 372
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL HLT ++SW + ++L +V+V VIK D + RI+L
Sbjct: 217 DYGAFIDLGSVDGLLHLT------DISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISL 270
Query: 126 SIKQLEEDP 134
IKQL+ +P
Sbjct: 271 GIKQLDSNP 279
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G F+ L ++ G++H ++SW D D+ +GDE+ KV+ I+ EK +++
Sbjct: 389 DFGIFVALG-----NNMDGMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVS 443
Query: 125 LSIKQLEEDPLLE 137
L +KQL +P E
Sbjct: 444 LGVKQLSPNPYQE 456
>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsA PE=1 SV=1
Length = 561
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL H+T L +W ++ ++L G EV KV+K D+EK R++L
Sbjct: 205 DYGAFVDLGGIDGLLHITDL------AWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRVSL 258
Query: 126 SIKQLEEDPLLETLEKVIPQDGSVISDSSSMS 157
+KQL EDP L + PQ + S+++
Sbjct: 259 GMKQLGEDP-WSGLTRRYPQGTRLFGKVSNLT 289
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVNVEDIFVG-----RDYGAFIHLR 74
G + V +++ +E +++ K W ++++ N D G D+G F+ L
Sbjct: 326 GDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITDFGVFVGL- 384
Query: 75 FPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
P G+ GLVH+S++SW + ++ +G+EV V+ ID EK RI+L IKQLE D
Sbjct: 385 -PGGI---DGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGD 440
Query: 134 PL 135
P
Sbjct: 441 PF 442
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRI 123
DYGAF+ + + GLVHVSE+ W +++ ++ GDEV V +++ID + RI
Sbjct: 290 DYGAFVEIE-----QGIEGLVHVSEMDW-TNKNVHPSKVVQLGDEVEVMILEIDEGRRRI 343
Query: 124 TLSIKQLEEDP 134
+L +KQ + +P
Sbjct: 344 SLGMKQCQANP 354
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
+ G + SE + D ++D+ L EGDEV ++ +DR+ I LS+K + E L
Sbjct: 474 EVEGYLPASEFAADRVEDLTTKLKEGDEVEAVIVTVDRKNRSIKLSVKAKDAKESREALN 533
Query: 141 KV 142
V
Sbjct: 534 SV 535
>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus subtilis (strain 168)
GN=ypfD PE=1 SV=1
Length = 382
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 20/160 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSSR-------VNVEDIFVGR-----DYGAF 70
G +S+ V++ + + +++ S + V ++ +++ + V + G+ D+GAF
Sbjct: 145 GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAF 204
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130
+ + DGL VH+S++S ++ D++ EG EV+VKV+ +DR+ RI+LSIK
Sbjct: 205 VDIGGIDGL------VHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISLSIKDT 258
Query: 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGL 170
P + EKV P G V+ + S +E LPG+
Sbjct: 259 LPGPWNQIGEKVKP--GDVLEGTVQRLVSFGAFVEILPGV 296
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 20/142 (14%)
Query: 1 MSPSHSCKEPQKSIHEIAKGLTGSIISVKVIQANEEMKKLVFSEKDAV---WNKYSSRVN 57
+S SH ++P + E G + VKV+ + + +++ S KD + WN+ +V
Sbjct: 219 LSHSH-VEKPSDVVEE------GQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEKVK 271
Query: 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVK 112
D+ G +GAF+ + L + GLVH+S++S I ++L EG V+VK
Sbjct: 272 PGDVLEGTVQRLVSFGAFVEI-----LPGVEGLVHISQISNKHIGTPHEVLEEGQTVKVK 326
Query: 113 VIKIDREKSRITLSIKQLEEDP 134
V+ ++ + RI+LS+++LEE P
Sbjct: 327 VLDVNENEERISLSMRELEETP 348
>sp|P80870|GS13_BACSU General stress protein 13 OS=Bacillus subtilis (strain 168) GN=yugI
PE=1 SV=3
Length = 130
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 10/114 (8%)
Query: 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 107
+++ V ++ G+ YGAF+ L GLVH+SEV+ ++DI + L+ GD
Sbjct: 2 AAKFEVGSVYTGKVTGLQAYGAFVALD-----EETQGLVHISEVTHGFVKDINEHLSVGD 56
Query: 108 EVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNS 161
EV+VKV+ +D EK +I+LSI+ + P + + P+ V ++S+ N+
Sbjct: 57 EVQVKVLAVDEEKGKISLSIRATQAAPEKKESKPRKPKAAQVSEEASTPQGFNT 110
>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti (strain 1021)
GN=rpsA PE=3 SV=2
Length = 568
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL +HV++++W + +ILN G +V+V++I+I++E RI+L
Sbjct: 210 DYGAFVDLGGIDGL------LHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISL 263
Query: 126 SIKQLEEDP 134
+KQLE DP
Sbjct: 264 GMKQLESDP 272
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G FI L DG + G+VH+S++ W+ + + + N+GD VR V+ +D +K RI+
Sbjct: 382 EFGLFIGL---DG--DVDGMVHLSDLDWNRPGEQVIEEFNKGDVVRAVVLDVDVDKERIS 436
Query: 125 LSIKQLEEDPLLET 138
L IKQL D + E
Sbjct: 437 LGIKQLGRDAVGEA 450
>sp|Q9ZD28|RS1_RICPR 30S ribosomal protein S1 OS=Rickettsia prowazekii (strain Madrid E)
GN=rpsA PE=3 SV=1
Length = 568
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
+ V VI+ +E+ K++ K W+ V G+ DYG F+ L+ D
Sbjct: 254 VKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKKMTGKVTNFADYGVFLELK--D 311
Query: 78 GLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
GL GLVH SE+SW Q+ R +L G EV V+++D EK R++LSIKQ +E+PL+
Sbjct: 312 GL---EGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQCQENPLI 368
Query: 137 ETLE 140
+ E
Sbjct: 369 KFAE 372
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL HLT ++SW + ++L +V+V VIK D + RI+L
Sbjct: 217 DYGAFIDLGSVDGLLHLT------DISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISL 270
Query: 126 SIKQLEEDP 134
IKQL+ +P
Sbjct: 271 GIKQLDSNP 279
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G F+ L ++ G++H ++SW D D+ +GDE+ KV+ I+ EK +++
Sbjct: 389 DFGIFVVLG-----NNMDGMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVS 443
Query: 125 LSIKQLEEDP 134
L IKQL +P
Sbjct: 444 LGIKQLLPNP 453
>sp|Q68WL4|RS1_RICTY 30S ribosomal protein S1 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpsA PE=3 SV=1
Length = 568
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 26 ISVKVIQANEEMKKLVFSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPD 77
+ V VI+ +E+ K++ K W+ V G+ DYG F+ L+ D
Sbjct: 254 VKVMVIKFDEKTKRISLGIKQLDSNPWDAIKEEFPVGKKMTGKVTNFADYGVFLELK--D 311
Query: 78 GLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136
GL GLVH SE+SW Q+ R +L G EV V+++D EK R++LSIKQ +E+PL+
Sbjct: 312 GL---EGLVHSSEISWLKSNQNPRKMLTIGQEVEFIVLEVDTEKHRVSLSIKQCQENPLI 368
Query: 137 ETLE 140
+ E
Sbjct: 369 KFAE 372
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL HLT ++SW + ++L +V+V VIK D + RI+L
Sbjct: 217 DYGAFIDLGSVDGLLHLT------DISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISL 270
Query: 126 SIKQLEEDP 134
IKQL+ +P
Sbjct: 271 GIKQLDSNP 279
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G F+ L ++ G++H ++SW D D+ +GDE+ KV+ I+ EK +++
Sbjct: 389 DFGIFVVLG-----NNMDGMIHEGDISWEDNGTDLLKSYKKGDEIECKVLAINFEKEQVS 443
Query: 125 LSIKQLEEDP 134
L IKQL +P
Sbjct: 444 LGIKQLSPNP 453
>sp|Q92HM4|RS1_RICCN 30S ribosomal protein S1 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rpsA PE=3 SV=1
Length = 568
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
DYG FI L+ DGL GLVH SE+SW Q+ R L G EV V+++D EK R++
Sbjct: 302 DYGVFIELK--DGL---EGLVHSSEISWLKSNQNPRKTLTIGQEVEFVVLEVDTEKHRVS 356
Query: 125 LSIKQLEEDPLLETLE 140
LSIKQ +E+PL + E
Sbjct: 357 LSIKQCQENPLTKFAE 372
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAFI L DGL HLT ++SW + ++L+ +V+V VIK D + RI+L
Sbjct: 217 DYGAFIDLGSVDGLLHLT------DISWGRVNHPSEVLDFNQKVKVMVIKFDEKNKRISL 270
Query: 126 SIKQLEEDP 134
IKQL+ +P
Sbjct: 271 GIKQLDSNP 279
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSW-DLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124
D+G F+ L ++ G++H ++SW D D+ +GDE+ KV+ I+ EK +++
Sbjct: 389 DFGIFVALG-----NNMDGMIHEGDISWEDKGTDLLKSYKKGDEIECKVLAINIEKEQVS 443
Query: 125 LSIKQLEEDPLLE 137
L IKQL +P E
Sbjct: 444 LGIKQLSPNPYQE 456
>sp|B6J6S7|PNP_COXB1 Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain CbuK_Q154) GN=pnp PE=3 SV=1
Length = 696
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 126 SIKQLE 131
S+KQ++
Sbjct: 691 SMKQID 696
>sp|Q83D87|PNP_COXBU Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=pnp PE=3 SV=1
Length = 696
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 126 SIKQLE 131
S+KQ++
Sbjct: 691 SMKQID 696
>sp|A9ND62|PNP_COXBR Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain RSA 331 / Henzerling II) GN=pnp PE=3 SV=1
Length = 696
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 126 SIKQLE 131
S+KQ++
Sbjct: 691 SMKQID 696
>sp|A9KFK6|PNP_COXBN Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain Dugway 5J108-111) GN=pnp PE=3 SV=1
Length = 696
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 126 SIKQLE 131
S+KQ++
Sbjct: 691 SMKQID 696
>sp|B6J0K5|PNP_COXB2 Polyribonucleotide nucleotidyltransferase OS=Coxiella burnetii
(strain CbuG_Q212) GN=pnp PE=3 SV=1
Length = 696
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 48/66 (72%), Gaps = 6/66 (9%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L + GLVH+S+++ + ++++RD L EG +RVKVI+IDR+ R+ L
Sbjct: 637 DFGAFVQI-----LPNTQGLVHISQIAQERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRL 690
Query: 126 SIKQLE 131
S+KQ++
Sbjct: 691 SMKQID 696
>sp|A1WXU7|PNP_HALHL Polyribonucleotide nucleotidyltransferase OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=pnp PE=3 SV=1
Length = 702
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 50/68 (73%), Gaps = 6/68 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+++ L GLVH+S++S + ++++ D L+EGD VRVKV+++DR+ RI L
Sbjct: 641 DFGAFVNI-----LPGRDGLVHISQISNNRVENVADELSEGDSVRVKVLEVDRQ-GRIRL 694
Query: 126 SIKQLEED 133
S+K +EE+
Sbjct: 695 SMKAVEEE 702
>sp|B4SQR6|PNP_STRM5 Polyribonucleotide nucleotidyltransferase OS=Stenotrophomonas
maltophilia (strain R551-3) GN=pnp PE=3 SV=1
Length = 702
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 6/67 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S D ++ + D+L EGD V+VKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSDRVEKVGDVLKEGDVVKVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEE 132
S+K +EE
Sbjct: 689 SMKAVEE 695
>sp|B2FN86|PNP_STRMK Polyribonucleotide nucleotidyltransferase OS=Stenotrophomonas
maltophilia (strain K279a) GN=pnp PE=3 SV=1
Length = 702
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 6/67 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S D ++ + D+L EGD V+VKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSDRVEKVGDVLKEGDVVKVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEE 132
S+K +EE
Sbjct: 689 SMKAVEE 695
>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3
SV=1
Length = 481
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ L DGL VHVSE+SW I +++ GDEV V+V+ +D ++ R++L
Sbjct: 221 NFGAFVDLGGVDGL------VHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSL 274
Query: 126 SIKQLEEDP 134
S+K +EDP
Sbjct: 275 SLKATQEDP 283
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 13/119 (10%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G ++V+V+ + + +++ S K + W ++ + I G+ +GAF+ R
Sbjct: 255 GDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFV--R 312
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
+G+ GLVH+SE++ ++ ++ GD+ VKVI ID E+ RI+LS+KQ ED
Sbjct: 313 VEEGI---EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368
>sp|Q6NDP1|RS1_RHOPA 30S ribosomal protein S1 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rpsA PE=1 SV=1
Length = 565
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
DYGAF+ L DGL +HV++++W + ++L G V+VK+IKI+ E RI+L
Sbjct: 213 DYGAFVDLGGIDGL------LHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISL 266
Query: 126 SIKQLEEDP 134
+KQL +DP
Sbjct: 267 GMKQLLDDP 275
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 16/129 (12%)
Query: 23 GSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHLR 74
G + VK+I+ N E ++ K D W ++ + F GR DYGAF+ L
Sbjct: 247 GQTVKVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVELE 306
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIR--DILNEGDEVRVKVIKIDREKSRITLSIKQLEE 132
+ GL+HVSE+SW +++ I++ EV V+V+++D K RI+L +KQ
Sbjct: 307 -----PGIEGLIHVSEMSW-TKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMR 360
Query: 133 DPLLETLEK 141
+P +EK
Sbjct: 361 NPWEVFVEK 369
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-QDIRDILNEGDEVRVKVIKIDREKSRIT 124
++G F+ L DG + G+VH+S++ W L + + D +GD V+ V+ +D EK RI+
Sbjct: 385 EFGLFLGL---DG--DVDGMVHLSDLDWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERIS 439
Query: 125 LSIKQLEEDPLLE 137
L +KQLE DP E
Sbjct: 440 LGVKQLEGDPFAE 452
>sp|A1ST53|PNP_PSYIN Polyribonucleotide nucleotidyltransferase OS=Psychromonas
ingrahamii (strain 37) GN=pnp PE=3 SV=1
Length = 698
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 11/90 (12%)
Query: 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 107
++ V V I+ G+ D+GAF+++ L GLVH+S++ + +Q + D L EG
Sbjct: 615 TAEVEVGTIYTGKVVRLADFGAFVNI-----LPGKDGLVHISQICEERVQKVSDHLKEGQ 669
Query: 108 EVRVKVIKIDREKSRITLSIKQLEEDPLLE 137
EV+VKV+++DR+ R+ LSIK+ E E
Sbjct: 670 EVKVKVLEVDRQ-GRVRLSIKEAAEKTTAE 698
>sp|O33698|RS1_SYNE7 30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC
7942) GN=rpsA PE=3 SV=1
Length = 295
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGRDYGAFIHLRFPDGLY 80
L G ++V ++ N KKLV SE+ A + V + G+ G F D L
Sbjct: 155 LKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLKPFGVFVD-LG 213
Query: 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLE 140
T L+ ++++S + D+ I GD ++ V+ ID K RI+LS K LE P E LE
Sbjct: 214 GATALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVLENHP-GEILE 272
Query: 141 KV 142
V
Sbjct: 273 NV 274
>sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rpsA PE=3 SV=1
Length = 392
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 26/161 (16%)
Query: 23 GSIISVKVIQANEEMKKLVFSEKDAVWNKYSS---RVNVEDIFVGR-----DYGAFIHLR 74
G + VKV ++ +++ S KD + + S + + +D+ G+ ++GAF+ +
Sbjct: 240 GQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHEDDVIEGKVVRLANFGAFVEIA 299
Query: 75 FPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134
+ GLVH+SE++ + I + L G +V VK++ ID E RI+LSIK
Sbjct: 300 -----PGVQGLVHISEIAHEHIGTPGEKLEPGQQVNVKILGIDEENERISLSIK------ 348
Query: 135 LLETLEKVIPQDGSVISDSSSMSSSNSN-TIEPLPGLGAIF 174
+P++ V SD ++ S SN +IE P LG +F
Sbjct: 349 ------ATLPKEDVVESDDATTQSYLSNDSIEDNPTLGDVF 383
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 23 GSIISVKVIQANEEMKKLVFS-------EKDAVWNKYSSRVNVEDIFVGR-----DYGAF 70
G I +KV + + E +++ S E D +N D+ G+ ++GAF
Sbjct: 151 GQTIRIKVEELDPENNRVILSRKAVEQAENDVKKASLLESLNAGDVIKGKVARLTNFGAF 210
Query: 71 IHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128
+ + DGL VHVSE+S + + D+++ G EV VKV ++++ RI+LSIK
Sbjct: 211 VDIGGVDGL------VHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIK 262
>sp|P74142|RS1B_SYNY3 30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1b PE=3 SV=1
Length = 305
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 69/130 (53%), Gaps = 13/130 (10%)
Query: 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR-----DYGAFIHLRF 75
L G ++ +++AN++ KLV +++ + ++ +I+ G+ YG F+ +
Sbjct: 156 LVGQVLKAHILEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQPYGVFVEIE- 214
Query: 76 PDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP- 134
+TGL+HVS+VS + + + G + V V +ID K+RI+LS + LE P
Sbjct: 215 -----GVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRISLSTRILETYPG 269
Query: 135 -LLETLEKVI 143
L+E ++++
Sbjct: 270 ELVEKFDEMM 279
>sp|Q8P7V1|PNP_XANCP Polyribonucleotide nucleotidyltransferase OS=Xanthomonas campestris
pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=pnp PE=3 SV=1
Length = 704
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S + ++ + D L EGD VRVKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSERVEKVGDKLKEGDLVRVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEE 132
SIK +EE
Sbjct: 689 SIKAVEE 695
>sp|B0RRB8|PNP_XANCB Polyribonucleotide nucleotidyltransferase OS=Xanthomonas campestris
pv. campestris (strain B100) GN=pnp PE=3 SV=2
Length = 704
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S + ++ + D L EGD VRVKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSERVEKVGDKLKEGDLVRVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEE 132
SIK +EE
Sbjct: 689 SIKAVEE 695
>sp|Q4UW98|PNP_XANC8 Polyribonucleotide nucleotidyltransferase OS=Xanthomonas campestris
pv. campestris (strain 8004) GN=pnp PE=3 SV=1
Length = 704
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S + ++ + D L EGD VRVKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSERVEKVGDKLKEGDLVRVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEE 132
SIK +EE
Sbjct: 689 SIKAVEE 695
>sp|Q21H65|PNP_SACD2 Polyribonucleotide nucleotidyltransferase OS=Saccharophagus
degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=pnp
PE=3 SV=1
Length = 722
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF++ L GLVH+S+++ + +Q++ D L EG ++ VK + ID ++ RI L
Sbjct: 646 DFGAFVNF-----LPGKDGLVHISQIAHERVQNVSDYLKEGQDIEVKCMDID-QRGRIKL 699
Query: 126 SIKQLEEDPLLETLE 140
SIK+L P ET E
Sbjct: 700 SIKELLPAPEAETAE 714
>sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN)
GN=rpsA PE=3 SV=2
Length = 481
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
++GAF+ L DGL VHVSE+SW I +++ G+EV V+V+ +D ++ R++L
Sbjct: 221 NFGAFVDLGGVDGL------VHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSL 274
Query: 126 SIKQLEEDP 134
S+K +EDP
Sbjct: 275 SLKATQEDP 283
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 68/124 (54%), Gaps = 13/124 (10%)
Query: 22 TGSIISVKVIQANEEMKKLVFSEK---DAVWNKYSSRVNVEDIFVGR-----DYGAFIHL 73
G+ ++V+V+ + + +++ S K + W ++ + I G+ +GAF+
Sbjct: 254 VGNEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFV-- 311
Query: 74 RFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133
R +G+ GLVH+SE++ ++ ++ GD+ VKVI ID E+ RI+LS+KQ ED
Sbjct: 312 RVEEGI---EGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368
Query: 134 PLLE 137
+ E
Sbjct: 369 YIEE 372
>sp|Q87EV0|PNP_XYLFT Polyribonucleotide nucleotidyltransferase OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=pnp PE=3 SV=2
Length = 700
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 6/68 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S + ++ + D L EGD VRVKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSERVERVGDKLKEGDVVRVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEED 133
SIK +EE+
Sbjct: 689 SIKAVEEE 696
>sp|B2I730|PNP_XYLF2 Polyribonucleotide nucleotidyltransferase OS=Xylella fastidiosa
(strain M23) GN=pnp PE=3 SV=1
Length = 700
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 6/68 (8%)
Query: 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITL 125
D+GAF+ + L GLVHVS++S + ++ + D L EGD VRVKV+++D++ RI L
Sbjct: 635 DFGAFVTI-----LPGKDGLVHVSQISSERVERVGDKLKEGDVVRVKVLEVDKQ-GRIRL 688
Query: 126 SIKQLEED 133
SIK +EE+
Sbjct: 689 SIKAVEEE 696
>sp|Q6AJY9|PNP_DESPS Polyribonucleotide nucleotidyltransferase OS=Desulfotalea
psychrophila (strain LSv54 / DSM 12343) GN=pnp PE=3 SV=1
Length = 692
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 11/83 (13%)
Query: 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 107
++ V V ++ G+ D+GAF+ + L GLVH+SE++ + ++D+ D++NEGD
Sbjct: 614 TAEVEVGAVYTGKVKTIKDFGAFVEI-----LPGTDGLVHISELALERVKDVTDVVNEGD 668
Query: 108 EVRVKVIKIDREKSRITLSIKQL 130
+ VKV+ +D + RI LS K L
Sbjct: 669 TIEVKVLDVDN-RGRIRLSRKAL 690
>sp|Q482T5|PNP_COLP3 Polyribonucleotide nucleotidyltransferase OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=pnp PE=3
SV=1
Length = 705
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 55/85 (64%), Gaps = 11/85 (12%)
Query: 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGD 107
++ + V ++ G+ D+GAF+++ L GLVH+S++S + + ++ ++L EG
Sbjct: 616 TAEIEVGTLYTGKVVRIVDFGAFVNV-----LPGKDGLVHISQISEERVNNVSEVLTEGQ 670
Query: 108 EVRVKVIKIDREKSRITLSIKQLEE 132
EV+VKV+++DR+ R+ LSIK+ E
Sbjct: 671 EVKVKVLEVDRQ-GRVRLSIKEAME 694
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,991,812
Number of Sequences: 539616
Number of extensions: 3508345
Number of successful extensions: 13946
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 12910
Number of HSP's gapped (non-prelim): 1015
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)