Query 026794
Match_columns 233
No_of_seqs 275 out of 1656
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 22:20:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 99.9 9.3E-23 3.2E-27 179.5 13.7 171 21-225 41-219 (285)
2 1kl9_A Eukaryotic translation 99.8 5E-22 1.7E-26 164.3 1.3 112 56-186 13-129 (182)
3 2khi_A 30S ribosomal protein S 99.8 2.7E-19 9.4E-24 137.4 6.9 88 48-140 20-113 (115)
4 2a19_A EIF-2- alpha, eukaryoti 99.8 2.1E-19 7.2E-24 147.7 2.9 97 57-165 14-115 (175)
5 3go5_A Multidomain protein wit 99.7 9.4E-18 3.2E-22 147.6 11.4 108 20-142 112-229 (285)
6 2cqo_A Nucleolar protein of 40 99.7 1.1E-17 3.7E-22 129.3 5.0 87 48-138 12-105 (119)
7 2k4k_A GSP13, general stress p 99.7 7.4E-17 2.5E-21 126.4 8.7 78 54-136 3-85 (130)
8 1luz_A Protein K3, protein K2; 99.7 6.8E-17 2.3E-21 118.5 7.2 77 53-133 6-87 (88)
9 2khj_A 30S ribosomal protein S 99.7 6.1E-17 2.1E-21 123.0 7.1 86 42-132 12-105 (109)
10 1q8k_A Eukaryotic translation 99.7 1E-17 3.4E-22 148.7 2.5 99 56-166 11-114 (308)
11 2eqs_A ATP-dependent RNA helic 99.7 1.6E-16 5.3E-21 119.7 7.9 81 53-137 7-93 (103)
12 2k52_A Uncharacterized protein 99.6 2.3E-15 7.8E-20 108.1 10.0 70 55-133 2-76 (80)
13 3aev_A Translation initiation 99.6 1.5E-15 5E-20 132.9 9.4 98 56-165 9-111 (275)
14 3cw2_C Translation initiation 99.5 2.5E-15 8.5E-20 131.0 4.6 86 54-142 7-97 (266)
15 4aid_A Polyribonucleotide nucl 99.5 1.2E-15 4E-20 148.4 0.1 124 8-138 567-716 (726)
16 1e3p_A Guanosine pentaphosphat 99.4 1.5E-15 5.1E-20 148.6 -5.4 124 8-138 595-750 (757)
17 3cdi_A Polynucleotide phosphor 99.4 1.3E-14 4.4E-19 141.5 0.0 101 31-138 593-706 (723)
18 4ayb_E DNA-directed RNA polyme 99.4 2.4E-13 8.2E-18 111.7 4.4 82 49-136 72-175 (180)
19 1go3_E DNA-directed RNA polyme 99.4 7E-13 2.4E-17 109.5 6.2 81 50-136 73-176 (187)
20 1wi5_A RRP5 protein homolog; S 99.3 3.9E-12 1.3E-16 97.8 6.3 77 53-133 16-98 (119)
21 3psi_A Transcription elongatio 99.2 8.6E-12 2.9E-16 127.1 7.6 73 53-130 897-975 (1219)
22 3bzc_A TEX; helix-turn-helix, 99.2 7.6E-12 2.6E-16 122.8 3.3 74 53-131 649-727 (785)
23 1y14_B B16, RPB7, DNA-directed 99.2 4.5E-11 1.5E-15 97.4 6.8 114 2-121 14-155 (171)
24 2nn6_I 3'-5' exoribonuclease C 99.1 5.8E-11 2E-15 99.9 7.3 77 54-130 77-163 (209)
25 3psf_A Transcription elongatio 99.1 4.8E-12 1.6E-16 127.2 0.0 74 53-131 900-979 (1030)
26 3m7n_A Putative uncharacterize 99.1 1.3E-10 4.4E-15 95.5 7.9 70 55-130 55-134 (179)
27 2khj_A 30S ribosomal protein S 99.1 3.4E-11 1.2E-15 91.1 4.1 88 124-226 11-106 (109)
28 2b8k_G B16, DNA-directed RNA p 99.1 3.1E-11 1.1E-15 102.0 4.1 127 2-136 14-172 (215)
29 2c35_B Human RPB7, DNA-directe 99.0 8E-10 2.7E-14 89.9 7.1 71 52-129 75-165 (172)
30 1hh2_P NUSA, N utilization sub 98.9 1.1E-09 3.9E-14 98.1 6.1 107 17-136 84-205 (344)
31 2je6_I RRP4, exosome complex R 98.9 2.1E-09 7E-14 92.8 6.3 71 54-130 70-148 (251)
32 2khi_A 30S ribosomal protein S 98.9 9.2E-10 3.1E-14 84.0 3.5 85 125-224 11-104 (115)
33 3h0g_G DNA-directed RNA polyme 98.9 1E-09 3.4E-14 89.5 3.6 68 49-122 75-157 (172)
34 2z0s_A Probable exosome comple 98.8 2.3E-09 7.7E-14 91.6 5.6 71 54-130 62-141 (235)
35 2ba0_A Archeal exosome RNA bin 98.8 9.5E-09 3.3E-13 87.5 8.1 70 55-130 54-129 (229)
36 2id0_A Exoribonuclease 2; RNAs 98.4 3.1E-07 1.1E-11 88.8 7.9 70 55-128 555-643 (644)
37 2a19_A EIF-2- alpha, eukaryoti 98.4 1.3E-07 4.5E-12 77.2 3.5 70 141-224 10-90 (175)
38 2k52_A Uncharacterized protein 98.4 4.1E-07 1.4E-11 64.6 5.5 62 157-224 9-74 (80)
39 1kl9_A Eukaryotic translation 98.4 2.1E-07 7.3E-12 76.4 4.2 67 144-224 14-90 (182)
40 1e3p_A Guanosine pentaphosphat 98.3 2.2E-08 7.5E-13 98.1 -3.9 106 66-224 626-743 (757)
41 1luz_A Protein K3, protein K2; 98.3 2.6E-07 8.7E-12 67.2 2.6 62 157-225 15-86 (88)
42 2cqo_A Nucleolar protein of 40 98.3 2.9E-07 9.8E-12 70.6 2.9 81 129-224 7-98 (119)
43 3ayh_B DNA-directed RNA polyme 98.2 1.9E-06 6.6E-11 71.8 7.0 62 53-120 76-161 (203)
44 2k4k_A GSP13, general stress p 98.2 7.4E-07 2.5E-11 69.2 3.9 61 157-223 11-79 (130)
45 1k0r_A NUSA; two component arr 98.2 3.2E-06 1.1E-10 76.1 8.0 85 50-142 120-215 (366)
46 2bh8_A 1B11; transcription, mo 98.2 2E-06 6.7E-11 64.0 5.4 70 22-96 13-99 (101)
47 2bx2_L Ribonuclease E, RNAse E 98.2 2.1E-06 7.1E-11 80.8 6.7 75 50-129 37-127 (517)
48 3cdi_A Polynucleotide phosphor 98.2 2.5E-07 8.5E-12 90.3 0.0 66 143-223 625-698 (723)
49 2vnu_D Exosome complex exonucl 98.1 2.3E-06 7.9E-11 84.1 5.6 65 60-128 671-760 (760)
50 2ckz_B C25, DNA-directed RNA p 98.1 4.6E-06 1.6E-10 70.3 5.8 116 1-121 13-158 (218)
51 1wi5_A RRP5 protein homolog; S 98.0 2.9E-06 9.8E-11 64.7 3.8 68 143-224 19-96 (119)
52 2wp8_J Exosome complex exonucl 98.0 3.7E-06 1.3E-10 84.6 5.4 66 59-128 887-977 (977)
53 3aev_A Translation initiation 97.9 7.6E-06 2.6E-10 71.3 4.3 67 144-224 10-86 (275)
54 1q8k_A Eukaryotic translation 97.9 8.4E-06 2.9E-10 72.1 4.3 62 157-224 17-88 (308)
55 2nn6_H Exosome complex exonucl 97.9 6.9E-06 2.4E-10 72.6 3.5 69 55-129 92-175 (308)
56 2eqs_A ATP-dependent RNA helic 97.8 1.5E-05 5.1E-10 59.2 4.5 66 143-224 10-87 (103)
57 2ja9_A Exosome complex exonucl 97.7 6.3E-05 2.2E-09 61.2 6.6 67 55-128 4-76 (175)
58 2asb_A Transcription elongatio 97.5 0.00032 1.1E-08 60.0 9.0 66 56-129 5-81 (251)
59 3psi_A Transcription elongatio 97.5 3.7E-05 1.3E-09 78.7 3.6 64 154-223 903-975 (1219)
60 4aid_A Polyribonucleotide nucl 97.5 1.3E-05 4.5E-10 78.1 0.0 65 154-225 638-710 (726)
61 3cw2_C Translation initiation 97.5 2.8E-05 9.4E-10 67.4 1.9 62 157-224 15-86 (266)
62 2bh8_A 1B11; transcription, mo 97.4 0.00017 6E-09 53.3 4.9 77 56-193 11-99 (101)
63 3psf_A Transcription elongatio 97.4 2.3E-05 7.8E-10 79.1 0.0 65 154-224 906-979 (1030)
64 3bzc_A TEX; helix-turn-helix, 97.4 7E-05 2.4E-09 73.7 2.8 65 154-224 655-727 (785)
65 1go3_E DNA-directed RNA polyme 96.7 0.0012 4.2E-08 53.7 4.2 60 157-223 85-168 (187)
66 1hh2_P NUSA, N utilization sub 96.4 0.0001 3.5E-09 66.0 -4.4 109 101-225 85-203 (344)
67 2nn6_I 3'-5' exoribonuclease C 96.4 0.0024 8.1E-08 53.2 4.0 68 143-224 79-164 (209)
68 4ayb_E DNA-directed RNA polyme 96.2 0.0036 1.2E-07 50.6 4.0 59 157-222 85-166 (180)
69 2nn6_G Exosome complex exonucl 96.1 0.0052 1.8E-07 53.7 4.8 68 55-129 124-196 (289)
70 2r7d_A Ribonuclease II family 95.7 0.021 7E-07 53.1 7.1 60 56-127 401-460 (469)
71 3m7n_A Putative uncharacterize 95.5 0.0046 1.6E-07 50.2 1.8 57 157-224 61-135 (179)
72 2b8k_G B16, DNA-directed RNA p 93.7 0.037 1.3E-06 46.2 3.0 57 157-221 87-164 (215)
73 2z0s_A Probable exosome comple 93.0 0.091 3.1E-06 44.2 4.4 60 157-223 70-141 (235)
74 1y14_B B16, RPB7, DNA-directed 92.6 0.087 3E-06 42.0 3.5 54 157-217 87-158 (171)
75 2c35_B Human RPB7, DNA-directe 92.2 0.084 2.9E-06 42.1 3.0 51 157-214 85-155 (172)
76 3h0g_G DNA-directed RNA polyme 92.1 0.1 3.5E-06 41.8 3.4 53 157-216 88-158 (172)
77 2je6_I RRP4, exosome complex R 91.7 0.13 4.5E-06 43.8 3.9 66 143-223 72-148 (251)
78 2id0_A Exoribonuclease 2; RNAs 91.6 0.15 5E-06 49.2 4.4 59 156-220 563-642 (644)
79 1jjg_A M156R; beta barrel, S1 91.2 0.4 1.4E-05 34.5 5.3 62 53-118 27-93 (102)
80 2ba0_A Archeal exosome RNA bin 88.0 0.66 2.2E-05 38.8 5.1 65 144-223 56-129 (229)
81 2vnu_D Exosome complex exonucl 87.8 0.25 8.6E-06 48.4 2.8 59 157-221 673-760 (760)
82 2wp8_J Exosome complex exonucl 85.6 0.39 1.3E-05 48.4 2.9 59 157-221 890-977 (977)
83 2rf4_A DNA-directed RNA polyme 82.1 6.6 0.00023 32.2 8.5 66 51-121 122-204 (214)
84 1k0r_A NUSA; two component arr 72.7 3 0.0001 37.3 4.0 63 155-223 132-205 (366)
85 3d0f_A Penicillin-binding 1 tr 68.7 12 0.00042 26.8 6.0 53 55-112 30-93 (106)
86 1h95_A CSD, Y-box binding prot 66.0 23 0.0008 24.1 6.7 36 81-116 31-66 (79)
87 2asb_A Transcription elongatio 65.9 6 0.0002 33.5 4.2 66 155-226 9-85 (251)
88 2bx2_L Ribonuclease E, RNAse E 61.8 7.3 0.00025 36.4 4.3 59 157-219 49-124 (517)
89 2ckz_B C25, DNA-directed RNA p 61.0 4.6 0.00016 33.4 2.6 52 157-214 85-158 (218)
90 3ayh_B DNA-directed RNA polyme 56.0 7.3 0.00025 31.6 3.0 50 157-213 85-161 (203)
91 2jpp_A Translational repressor 53.9 11 0.00038 25.5 3.1 39 186-226 2-40 (70)
92 2yty_A Cold shock domain-conta 52.1 19 0.00064 25.3 4.2 48 57-114 14-67 (88)
93 2k5n_A Putative cold-shock pro 51.9 51 0.0018 22.1 8.2 39 81-128 25-63 (74)
94 3i2z_B RNA chaperone, negative 49.4 38 0.0013 22.5 5.3 43 66-117 18-60 (71)
95 3aqq_A Calcium-regulated heat 49.3 52 0.0018 25.3 6.8 48 58-116 59-114 (147)
96 1c9o_A CSPB, cold-shock protei 42.7 65 0.0022 20.9 5.6 32 81-116 23-54 (66)
97 2jpp_A Translational repressor 42.1 21 0.00073 24.1 3.0 34 99-134 8-41 (70)
98 2bti_A Carbon storage regulato 40.1 24 0.00083 23.3 3.0 34 99-134 10-43 (63)
99 1t3o_A Carbon storage regulato 39.8 17 0.00058 26.1 2.4 40 184-225 21-60 (95)
100 3a0j_A Cold shock protein; OB- 39.3 63 0.0021 21.5 5.2 33 81-117 23-55 (73)
101 2bti_A Carbon storage regulato 38.8 46 0.0016 22.0 4.2 38 186-225 4-41 (63)
102 2nn6_H Exosome complex exonucl 38.7 21 0.00072 31.0 3.3 59 157-222 99-175 (308)
103 1zc1_A Ubiquitin fusion degrad 38.6 16 0.00055 30.0 2.3 99 21-134 75-180 (208)
104 1nz9_A Transcription antitermi 37.9 49 0.0017 20.8 4.3 19 111-129 23-41 (58)
105 3p8b_B Transcription antitermi 37.5 69 0.0024 24.2 5.8 61 69-130 46-129 (152)
106 1vpz_A Carbon storage regulato 37.4 28 0.00094 23.8 3.0 35 98-134 19-53 (73)
107 3i4o_A Translation initiation 37.0 19 0.00064 24.9 2.2 60 59-127 18-78 (79)
108 3ts2_A Protein LIN-28 homolog 35.7 1.2E+02 0.0042 23.0 7.0 43 81-129 39-81 (148)
109 1vpz_A Carbon storage regulato 34.2 55 0.0019 22.2 4.1 38 186-225 14-51 (73)
110 2ytx_A Cold shock domain-conta 32.7 45 0.0016 23.6 3.7 46 59-114 16-67 (97)
111 3cam_A Cold-shock domain famil 32.6 1E+02 0.0035 20.0 6.8 33 81-117 24-56 (67)
112 1wfq_A UNR protein; beta-barre 32.4 1.3E+02 0.0043 20.9 9.0 50 57-116 14-69 (89)
113 2qcp_X Cation efflux system pr 29.6 1.2E+02 0.0041 20.5 5.4 41 25-65 9-63 (80)
114 2do3_A Transcription elongatio 28.6 29 0.001 23.4 1.9 15 97-111 12-26 (69)
115 3ulj_A LIN28B, DNA-binding pro 27.4 1.6E+02 0.0054 20.5 6.2 33 81-117 38-70 (90)
116 2kcm_A Cold shock domain famil 26.9 1.4E+02 0.0049 19.9 5.7 42 81-128 22-64 (74)
117 2lss_A Cold shock-like protein 31.3 15 0.00051 24.5 0.0 32 81-116 27-58 (70)
118 2p9r_A Alpha-2-M, alpha-2-macr 24.4 45 0.0015 23.2 2.4 21 98-118 8-28 (102)
119 2vb2_X Copper protein, cation 22.5 1.9E+02 0.0066 19.8 6.4 41 25-65 17-71 (88)
120 2yuj_A Ubiquitin fusion degrad 22.3 36 0.0012 27.5 1.7 97 22-133 71-174 (190)
121 3h8z_A FragIle X mental retard 20.7 2E+02 0.0067 21.5 5.5 53 58-113 14-71 (128)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.89 E-value=9.3e-23 Score=179.50 Aligned_cols=171 Identities=13% Similarity=0.095 Sum_probs=136.3
Q ss_pred CCCCEEEEEEEEEeCCCCEEEEEechhhHhhhccCCCCCCEEEEE------eeeEEEEEccCCCCccEEEEEEccccCcc
Q 026794 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR------DYGAFIHLRFPDGLYHLTGLVHVSEVSWD 94 (233)
Q Consensus 21 ~vG~~v~~~Vi~id~~~~~i~lS~k~~~~~~~~~~~~~G~vv~g~------~~G~fV~l~~~~~~~gv~Glv~~sels~~ 94 (233)
.+||+|+|.|+ .|. .+++++|.+. ..+++|+++.|+ +|||||+++. ++.+||||+||++|.
T Consensus 41 ~vGdevev~v~-~d~-~~r~iat~~~-------p~~~~G~~~~g~V~~v~~~~GaFVdiG~----~~~d~lvp~sel~~~ 107 (285)
T 3go5_A 41 TVGDTVKGFAY-TDM-KQKLRLTTLE-------VTATQDQFGWGRVTEVRKDLGVFVDTGL----PDKEIVVSLDILPEL 107 (285)
T ss_dssp CTTSEEEEEEE-ECT-TSCEEEECSC-------CCSCSSSCEEEEEEEEETTTEEEEECSC----TTCCEEEEGGGSCSS
T ss_pred ccCCEEEEEEE-ECC-CCCEEEeccc-------ccccCCCEEEEEEEEEccCceEEEEECC----CCcEEEEEHHHCCcc
Confidence 69999999987 565 4566677543 247899999998 3899999961 158999999999996
Q ss_pred cccCcccccCCCCEEEEEEEEEeCCCCeEEEEEecc-ccChhhHHhhhhcCCCCeeeecCCccccCCeeeeccCCChhhh
Q 026794 95 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL-EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAI 173 (233)
Q Consensus 95 ~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~-~~dp~~~~~~~~~~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~ 173 (233)
+. ..+++||.+.|. +.+|+ ++||.+|+|+. ..+||....+ .++.|+. ++|+|.++++ +
T Consensus 108 ~~----~~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~~~~~-~~~~G~~--------V~g~V~~i~~------~ 166 (285)
T 3go5_A 108 KE----LWPKKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLARPAY-NNMQNQN--------WPAIVYRLKL------S 166 (285)
T ss_dssp GG----GSCCTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHCCCCC-SCCTTCE--------EEEEEEEEET------T
T ss_pred cc----cccCCCCEEEEE-EEECC-CCcEEEEehhhhhcchhhhhhh-hCCCCCE--------EEEEEEEEeC------C
Confidence 53 346899999766 69998 79999999986 5789965444 4677887 7799999885 5
Q ss_pred hhhh-cccCCeeEEEeeccccccccccCceEEEEeecCCCCCEEEEEEcccce
Q 026794 174 FEEL-LQEDGIDDVRITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRC 225 (233)
Q Consensus 174 ~~~l-~~~~gv~gl~~~~~~~~~~~vg~~~~v~i~~~d~~~~ki~Ls~r~~~~ 225 (233)
|+|+ .+++|+.||.--.+..+...+||+++++|.+++++++||+||.|+...
T Consensus 167 G~fV~~i~~g~~Glih~SEl~~~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~ 219 (285)
T 3go5_A 167 GTFVYLPENNMLGFIHPSERYAEPRLGQVLDARVIGFREVDRTLNLSLKPRSF 219 (285)
T ss_dssp EEEEEETTTTEEEEECGGGCSSCCCTTCEEEEEEEEEETTTTEEEEECSCCCC
T ss_pred cEEEEEeCCCeEEEEEHHHccccCCCCCEEEEEEEEEECCCCeEEEEeChhhh
Confidence 7888 889999999633333334578999999999999999999999997644
No 2
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.83 E-value=5e-22 Score=164.26 Aligned_cols=112 Identities=21% Similarity=0.375 Sum_probs=84.7
Q ss_pred CCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEecc
Q 026794 56 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130 (233)
Q Consensus 56 ~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~ 130 (233)
+++|+++.|+ +||+||+|.+. .+++||||+|+++|+++.++++.|++||.|+|+|+++|.++++|+||+|++
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~---~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~ 89 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEY---NNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRV 89 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTT---TTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccC---CCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 4899999999 99999999421 279999999999999999999999999999999999999999999999999
Q ss_pred ccChhhHHhhhhcCCCCeeeecCCccccCCeeeeccCCChhhhhhhhcccCCeeEE
Q 026794 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDV 186 (233)
Q Consensus 131 ~~dp~~~~~~~~~~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl 186 (233)
.++||....++ ++.|+. ++|++..+++ .|+ +++++|++||
T Consensus 90 ~~~p~~~~~~~-~~~g~~--------v~g~v~~i~~-----~~g--v~l~~giegl 129 (182)
T 1kl9_A 90 SPEEAIKCEDK-FTKSKT--------VYSILRHVAE-----VLE--YTKDEQLESL 129 (182)
T ss_dssp CHHHHHHHHHH-HHHHHH--------HHHHHHHHHH-----HTT--CCSHHHHHHH
T ss_pred CcChHHHHHHh-ccCCCE--------EEEEEEEchh-----hcC--CcccCChhhe
Confidence 99999766654 566666 6788887775 145 5668899988
No 3
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.77 E-value=2.7e-19 Score=137.39 Aligned_cols=88 Identities=36% Similarity=0.627 Sum_probs=80.0
Q ss_pred hHhhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcc-cccCcccccCCCCEEEEEEEEEeCCCC
Q 026794 48 VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKS 121 (233)
Q Consensus 48 ~~~~~~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~-~~~~~~~~~~~Gd~V~vkVi~vd~e~~ 121 (233)
+|+.+...+++|+++.|+ +||+||+|+ ++++||||+|+++|+ +..++.+.|++||.|+|+|+++|.+++
T Consensus 20 p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~-----~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~ 94 (115)
T 2khi_A 20 HWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE-----EGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERR 94 (115)
T ss_dssp -CCCSSCSSCSSCEEEEEEEEEETTEEEEECS-----TTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTT
T ss_pred CHHHHhhcCCCCCEEEEEEEEEECCEEEEEEC-----CCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCC
Confidence 488888899999999999 999999997 389999999999984 788999999999999999999999999
Q ss_pred eEEEEEeccccChhhHHhh
Q 026794 122 RITLSIKQLEEDPLLETLE 140 (233)
Q Consensus 122 ri~LS~k~~~~dp~~~~~~ 140 (233)
+|.||+|++.+|||+++.+
T Consensus 95 rI~lslk~~~~~p~~~~~~ 113 (115)
T 2khi_A 95 RISLGLKQCKANPWQQFAE 113 (115)
T ss_dssp EEEECCCCCCSSCCCCCCC
T ss_pred EEEEEEEecCcCHHHHHHh
Confidence 9999999999999975443
No 4
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.75 E-value=2.1e-19 Score=147.71 Aligned_cols=97 Identities=23% Similarity=0.388 Sum_probs=77.7
Q ss_pred CCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeccc
Q 026794 57 NVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLE 131 (233)
Q Consensus 57 ~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~~ 131 (233)
++|+++.|+ +||+||+|.++ .+++||||+|+++|+++.++++.|++||.|+|+|+++|.++++|.||+|++.
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~---~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~ 90 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEY---DNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVS 90 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTT---TTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCC
T ss_pred CCCCEEEEEEEEEecceEEEEEcCC---CCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecC
Confidence 499999999 99999999411 2799999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHhhhhcCCCCeeeecCCccccCCeeeec
Q 026794 132 EDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165 (233)
Q Consensus 132 ~dp~~~~~~~~~~~g~~~~~~~~~~~~g~v~~v~ 165 (233)
++||....++ ++.|+. +.|+|..++
T Consensus 91 ~~~~~~~~~~-~~~g~~--------v~g~V~~i~ 115 (175)
T 2a19_A 91 SEDIIKCEEK-YQKSKT--------VHSILRYCA 115 (175)
T ss_dssp HHHHHHHHHH-HHHHHH--------HHHHHHHHH
T ss_pred cChHHHHHHh-ccCCCc--------ceEEEEEch
Confidence 9999876665 566666 568777776
No 5
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.74 E-value=9.4e-18 Score=147.59 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=95.2
Q ss_pred cCCCCEEEEEEEEEeCCCCEEEEEechh----hHhhhccCCCCCCEEEEE-----eeeEEE-EEccCCCCccEEEEEEcc
Q 026794 20 GLTGSIISVKVIQANEEMKKLVFSEKDA----VWNKYSSRVNVEDIFVGR-----DYGAFI-HLRFPDGLYHLTGLVHVS 89 (233)
Q Consensus 20 ~~vG~~v~~~Vi~id~~~~~i~lS~k~~----~~~~~~~~~~~G~vv~g~-----~~G~fV-~l~~~~~~~gv~Glv~~s 89 (233)
..+||++.++ +.+|+ ++|+++|+|++ +|+.....+++|++++|+ +||+|| .++ .+++||||+|
T Consensus 112 ~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~-----~g~~Glih~S 184 (285)
T 3go5_A 112 PKKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPE-----NNMLGFIHPS 184 (285)
T ss_dssp CCTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHCCCCCSCCTTCEEEEEEEEEETTEEEEEETT-----TTEEEEECGG
T ss_pred cCCCCEEEEE-EEECC-CCcEEEEehhhhhcchhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeC-----CCeEEEEEHH
Confidence 3699999766 79998 78999999754 488888999999999999 999999 997 3899999999
Q ss_pred ccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeccccChhhHHhhhh
Q 026794 90 EVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKV 142 (233)
Q Consensus 90 els~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~~~dp~~~~~~~~ 142 (233)
|++. .+++||.|+|+|+++|++++||+||+|++..++|++.++..
T Consensus 185 El~~--------~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~~~~~~a~~i 229 (285)
T 3go5_A 185 ERYA--------EPRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLENDAQMI 229 (285)
T ss_dssp GCSS--------CCCTTCEEEEEEEEEETTTTEEEEECSCCCCCCCCHHHHHH
T ss_pred Hccc--------cCCCCCEEEEEEEEEECCCCeEEEEeChhhhhccchHHHHH
Confidence 9973 58999999999999999899999999999999987766654
No 6
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=129.31 Aligned_cols=87 Identities=28% Similarity=0.389 Sum_probs=78.1
Q ss_pred hHhhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCC--
Q 026794 48 VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK-- 120 (233)
Q Consensus 48 ~~~~~~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~-- 120 (233)
.|+.+...+++|++|.|+ +||+||+|.+ .+.+||||+|+++|.++.++.+.|++||.|+|+|+++|.++
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g----~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~ 87 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPG----CRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDR 87 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTT----CSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSC
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECC----CcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccC
Confidence 477778889999999999 9999999962 23699999999999999999999999999999999999764
Q ss_pred CeEEEEEeccccChhhHH
Q 026794 121 SRITLSIKQLEEDPLLET 138 (233)
Q Consensus 121 ~ri~LS~k~~~~dp~~~~ 138 (233)
++|.||+|++.++||++.
T Consensus 88 ~~i~LSlk~~~~~~~~~~ 105 (119)
T 2cqo_A 88 IKVSLSMKVVNQGTGKDL 105 (119)
T ss_dssp EEEEEESTTBCSSSCCBS
T ss_pred ceEEEEEeecccCCcccc
Confidence 799999999999999653
No 7
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.68 E-value=7.4e-17 Score=126.41 Aligned_cols=78 Identities=41% Similarity=0.742 Sum_probs=74.0
Q ss_pred cCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEe
Q 026794 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (233)
Q Consensus 54 ~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k 128 (233)
..+++|++|.|+ +||+||+|.+ +++||||+|+++|.++.++.+.|++||.|+|+|+++|.++++|.||+|
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~-----~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk 77 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDE-----ETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIR 77 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEET-----TEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECC-----CcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEe
Confidence 568999999998 9999999973 899999999999999999999999999999999999999999999999
Q ss_pred ccccChhh
Q 026794 129 QLEEDPLL 136 (233)
Q Consensus 129 ~~~~dp~~ 136 (233)
++.++||.
T Consensus 78 ~~~~~p~~ 85 (130)
T 2k4k_A 78 ATQAAPEK 85 (130)
T ss_dssp HHHHSCCC
T ss_pred ecccCccc
Confidence 99999985
No 8
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.68 E-value=6.8e-17 Score=118.48 Aligned_cols=77 Identities=32% Similarity=0.439 Sum_probs=69.3
Q ss_pred ccCCCCCCEEEEE----eeeEEEEEccCCCCccEEEEEEcc-ccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEE
Q 026794 53 SSRVNVEDIFVGR----DYGAFIHLRFPDGLYHLTGLVHVS-EVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (233)
Q Consensus 53 ~~~~~~G~vv~g~----~~G~fV~l~~~~~~~gv~Glv~~s-els~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~ 127 (233)
+...++|+++.|+ +||+||+|.+. ++++||+|+| +++|+++.++++.+ +||.|+|+|+++|.+++||.||+
T Consensus 6 y~~~~vG~~~~G~V~v~~fG~FVel~~~---~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lsl 81 (88)
T 1luz_A 6 YSLPNAGDVIKGRVYEKDYALYIYLFDY---PHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNY 81 (88)
T ss_dssp SCCCCTTCEEEEEEEEETTEEEEEETTC---TTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEE
T ss_pred ecCCCCCCEEEEEEEEEccEEEEEECCC---CCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEE
Confidence 3457899999998 99999999631 1699999999 99999999999999 99999999999999999999999
Q ss_pred eccccC
Q 026794 128 KQLEED 133 (233)
Q Consensus 128 k~~~~d 133 (233)
|++.+|
T Consensus 82 k~~~~~ 87 (88)
T 1luz_A 82 KRMCRH 87 (88)
T ss_dssp EEECSC
T ss_pred eecCCC
Confidence 998765
No 9
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.68 E-value=6.1e-17 Score=123.03 Aligned_cols=86 Identities=28% Similarity=0.412 Sum_probs=75.4
Q ss_pred EEechh---hHhhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEE
Q 026794 42 FSEKDA---VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKV 113 (233)
Q Consensus 42 lS~k~~---~~~~~~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkV 113 (233)
-|.|++ +|+.+...+++|+++.|+ +||+||+|+ .+++||||+|++++.++.++.+.|++||.|+|+|
T Consensus 12 ~~iKq~~~~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~-----~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V 86 (109)
T 2khj_A 12 SGLVPRGSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELA-----DGVEGYLRASEASRDRVEDATLVLSVGDEVEAKF 86 (109)
T ss_dssp ---------CHHHHTTTCCSSSEEEEEEEEECSSCEEEECS-----TTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEE
T ss_pred cchhhcccCHHHHHhhcCCCCCEEEEEEEEEECCeEEEEEC-----CCCEEEEEHHHcCcccccChhhccCCCCEEEEEE
Confidence 355554 599999999999999999 999999997 3899999999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEEecccc
Q 026794 114 IKIDREKSRITLSIKQLEE 132 (233)
Q Consensus 114 i~vd~e~~ri~LS~k~~~~ 132 (233)
+++|.++++|.||+|++.+
T Consensus 87 ~~vd~~~~ki~LS~k~~~~ 105 (109)
T 2khj_A 87 TGVDRKNRAISLSVRAKDE 105 (109)
T ss_dssp EEEETTTTEEEEETTSSSS
T ss_pred EEEECCCCEEEEEEeecCh
Confidence 9999988999999998754
No 10
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.67 E-value=1e-17 Score=148.66 Aligned_cols=99 Identities=26% Similarity=0.441 Sum_probs=86.7
Q ss_pred CCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEecc
Q 026794 56 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130 (233)
Q Consensus 56 ~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~ 130 (233)
+++|+++.|+ +||+||+|.+++ +++||||+|+++|+++.++.+.|++||.|.|+|+++|+++++|.||+|++
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~---gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~ 87 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYN---NIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRV 87 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTT---SCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSC
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCC---CeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 4699999999 999999996211 79999999999999999999999999999999999999999999999999
Q ss_pred ccChhhHHhhhhcCCCCeeeecCCccccCCeeeecc
Q 026794 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEP 166 (233)
Q Consensus 131 ~~dp~~~~~~~~~~~g~~~~~~~~~~~~g~v~~v~~ 166 (233)
.++||....++ ++.|+. +.|.|+++.+
T Consensus 88 ~~~p~~~~~~~-~~~G~~--------v~G~V~~v~~ 114 (308)
T 1q8k_A 88 SPEEAIKCEDK-FTKSKT--------VYSILRHVAE 114 (308)
T ss_dssp CHHHHHHHHHH-HHHHHH--------HHHHHHHHHH
T ss_pred ccChHHHHHHH-ccCCCe--------eEEEEEEccc
Confidence 99999877665 555665 5688877765
No 11
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=119.70 Aligned_cols=81 Identities=26% Similarity=0.553 Sum_probs=71.7
Q ss_pred ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEcccc-CcccccCcccccCCCCEEEEEEEEEeCCCCeEEEE
Q 026794 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV-SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (233)
Q Consensus 53 ~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sel-s~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS 126 (233)
...+++|+++.|+ +||+||+|.+.+ ++++||||+|++ ++.++.++.+.|++||.|+|+|+++|. +||.||
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~--~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LS 82 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLR--KRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLS 82 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSS--SCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEE
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCC--CCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEE
Confidence 4568999999998 999999997311 169999999999 677889999999999999999999996 699999
Q ss_pred EeccccChhhH
Q 026794 127 IKQLEEDPLLE 137 (233)
Q Consensus 127 ~k~~~~dp~~~ 137 (233)
+|++.++||.+
T Consensus 83 lk~~~~~~~~~ 93 (103)
T 2eqs_A 83 MKDVDQETGED 93 (103)
T ss_dssp STTBCTTTCCB
T ss_pred EeecccCCchh
Confidence 99999999963
No 12
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.62 E-value=2.3e-15 Score=108.14 Aligned_cols=70 Identities=31% Similarity=0.491 Sum_probs=63.2
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEec
Q 026794 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129 (233)
Q Consensus 55 ~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~ 129 (233)
.+++|+++.|+ +||+||+|+ .+++||||+|+++|.++ +.|++||.|+|+|+++|.+++||.||+|+
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~-----~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~ 72 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLN-----EQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIP 72 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEE-----TTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEEC-----CCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 47899999998 999999998 38999999999999876 78999999999999999989999999998
Q ss_pred cccC
Q 026794 130 LEED 133 (233)
Q Consensus 130 ~~~d 133 (233)
+.+.
T Consensus 73 ~~~~ 76 (80)
T 2k52_A 73 LEHH 76 (80)
T ss_dssp CC--
T ss_pred cccc
Confidence 8653
No 13
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.61 E-value=1.5e-15 Score=132.92 Aligned_cols=98 Identities=27% Similarity=0.436 Sum_probs=83.7
Q ss_pred CCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEecc
Q 026794 56 VNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQL 130 (233)
Q Consensus 56 ~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~ 130 (233)
+++|+++.|+ +||+||+|.+++ |++||||+|+++|+++.++.+.|++||.|.|+|+++|.++++|.||+|++
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~---gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~ 85 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYP---GKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRV 85 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTST---TCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCC---CeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 4589999999 999999996211 79999999999999999999999999999999999999999999999999
Q ss_pred ccChhhHHhhhhcCCCCeeeecCCccccCCeeeec
Q 026794 131 EEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIE 165 (233)
Q Consensus 131 ~~dp~~~~~~~~~~~g~~~~~~~~~~~~g~v~~v~ 165 (233)
.++||....++ ++.|+. +.|.+..++
T Consensus 86 ~~~~~~~~~~~-~~~g~~--------v~g~v~~v~ 111 (275)
T 3aev_A 86 TQQQRKAKLQE-FKRAQK--------AENLLRLAA 111 (275)
T ss_dssp CHHHHHHHHHH-HHHHHH--------HHHHHHHHH
T ss_pred CcchhHHHHHh-ccCCCe--------EEEEEEEch
Confidence 99999866655 455554 445555554
No 14
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.54 E-value=2.5e-15 Score=130.96 Aligned_cols=86 Identities=30% Similarity=0.476 Sum_probs=77.3
Q ss_pred cCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEe
Q 026794 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (233)
Q Consensus 54 ~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k 128 (233)
..+++|+++.|+ +||+||+|.+++ +++||||+|+++|+++.++.+.|++||.|.|+|+++|.++++|.||+|
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~---~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk 83 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYG---GLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLK 83 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTT---SEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEEST
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCC---CeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEE
Confidence 356899999999 999999995211 799999999999999999999999999999999999999999999999
Q ss_pred ccccChhhHHhhhh
Q 026794 129 QLEEDPLLETLEKV 142 (233)
Q Consensus 129 ~~~~dp~~~~~~~~ 142 (233)
++.++||.+..+++
T Consensus 84 ~~~~~~~~~~~~~~ 97 (266)
T 3cw2_C 84 KVTDDERRKKNLQW 97 (266)
T ss_dssp TSCTTHHHHHHHHH
T ss_pred ecchhhHHHHHHhc
Confidence 99999997766553
No 15
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.51 E-value=1.2e-15 Score=148.41 Aligned_cols=124 Identities=26% Similarity=0.411 Sum_probs=4.6
Q ss_pred CCCchhHhhhcccCCCCEEE--EE-----------EEEEeCCCCEEEEEechh--------hHhhhccCCCCCCEEEEE-
Q 026794 8 KEPQKSIHEIAKGLTGSIIS--VK-----------VIQANEEMKKLVFSEKDA--------VWNKYSSRVNVEDIFVGR- 65 (233)
Q Consensus 8 ~~p~~~~~~~~~~~vG~~v~--~~-----------Vi~id~~~~~i~lS~k~~--------~~~~~~~~~~~G~vv~g~- 65 (233)
..|+....+...+.+|+.|- .+ -|+++ +.+.+.++.... .++.+...+++|++|.|+
T Consensus 567 ~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V 645 (726)
T 4aid_A 567 FAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-DDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKV 645 (726)
T ss_dssp SCCC--------------------------------------------CCSCHHHHHHHHHC------------------
T ss_pred cCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-CCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEE
Confidence 45777777666666666553 11 15565 345665554421 256677889999999999
Q ss_pred ----eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeccccChhhHH
Q 026794 66 ----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 138 (233)
Q Consensus 66 ----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~~~dp~~~~ 138 (233)
+||+||+|. ++++||||+|+++|+++.++.+.|++||.|+|||+++|. ++||.||+|++.++||++.
T Consensus 646 ~~I~~fGaFVel~-----~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~~~~~G~~~ 716 (726)
T 4aid_A 646 VKVVDFGAFVNFF-----GAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVVDQETGEDL 716 (726)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEeccEEEEEEC-----CCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeecccCcchhh
Confidence 999999998 489999999999999999999999999999999999997 8999999999999999654
No 16
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.44 E-value=1.5e-15 Score=148.57 Aligned_cols=124 Identities=21% Similarity=0.390 Sum_probs=43.1
Q ss_pred CCCchhHhhhcccCCCCEEE--EEE-----------EEEeCCCCEEEEEechhh--------Hhhhc--cCCCCCCEEEE
Q 026794 8 KEPQKSIHEIAKGLTGSIIS--VKV-----------IQANEEMKKLVFSEKDAV--------WNKYS--SRVNVEDIFVG 64 (233)
Q Consensus 8 ~~p~~~~~~~~~~~vG~~v~--~~V-----------i~id~~~~~i~lS~k~~~--------~~~~~--~~~~~G~vv~g 64 (233)
..|.....+.+.+.+|+.|. .++ ++++. .+.+.+|..... .+.+. ..+++|++|+|
T Consensus 595 ~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-dG~v~Is~~~~~~~~~a~~~i~~i~~p~~~~vG~i~~G 673 (757)
T 1e3p_A 595 NAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-DGTIYIGAADGPAAEAARATINGIANPTSPEVGERILG 673 (757)
T ss_dssp TSCBCCCC------------------CTTCCCCCSCC---------CCCBSSHHHHCC---------------------C
T ss_pred cCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-CceEEEecCCHHHHHHHHHHHHHhcchhhcccccEEEE
Confidence 45665555566666666553 122 55663 577888876431 23344 67899999999
Q ss_pred E-----eeeEEEEEccCCCCccEEEEEEcccc----CcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeccccChh
Q 026794 65 R-----DYGAFIHLRFPDGLYHLTGLVHVSEV----SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPL 135 (233)
Q Consensus 65 ~-----~~G~fV~l~~~~~~~gv~Glv~~sel----s~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~~~dp~ 135 (233)
+ +||+||+|. +|++||||+|++ +|+|+.++.+.|++||.|+|+|+++|. ++||+||+|++.++||
T Consensus 674 ~V~~i~~fGaFV~l~-----~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~pw 747 (757)
T 1e3p_A 674 SVVKTTTFGAFVSLL-----PGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPVIEGEEAA 747 (757)
T ss_dssp BEEECC-CSCEECCC--------CCCCC-------------------CCSSCBCCCCCCCCCS-SCC-------------
T ss_pred EEEEccccEEEEEEc-----CCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCCEEEEEecCCCCch
Confidence 8 999999997 489999999999 999999999999999999999999998 9999999999999999
Q ss_pred hHH
Q 026794 136 LET 138 (233)
Q Consensus 136 ~~~ 138 (233)
...
T Consensus 748 ~~~ 750 (757)
T 1e3p_A 748 SDE 750 (757)
T ss_dssp ---
T ss_pred hhh
Confidence 653
No 17
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.42 E-value=1.3e-14 Score=141.45 Aligned_cols=101 Identities=30% Similarity=0.541 Sum_probs=0.0
Q ss_pred EEEeCCCCEEEEEechh--------hHhhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCccccc
Q 026794 31 IQANEEMKKLVFSEKDA--------VWNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ 97 (233)
Q Consensus 31 i~id~~~~~i~lS~k~~--------~~~~~~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~ 97 (233)
++++. .+.+.+|.... .++.+...+++|++|+|+ +||+||+|. +|.+||||+|+++|+|+.
T Consensus 593 IdI~~-dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~-----~g~eGLvHiSel~~~~v~ 666 (723)
T 3cdi_A 593 IEIED-DGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIG-----GGKEGLVHISQIADKRVE 666 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEecC-CccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeC-----CCceEEEEHHHcCCcccc
Confidence 45553 46666665432 245667889999999999 999999997 489999999999999999
Q ss_pred CcccccCCCCEEEEEEEEEeCCCCeEEEEEeccccChhhHH
Q 026794 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET 138 (233)
Q Consensus 98 ~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~~~dp~~~~ 138 (233)
++.+.|++||.|+|||+++|. ++||+||+|++.++||.+.
T Consensus 667 ~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~~g~~~ 706 (723)
T 3cdi_A 667 KVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQPAA 706 (723)
T ss_dssp -----------------------------------------
T ss_pred CcccccCCCCEEEEEEEEECC-CCcEEEEEEeccCCCCccc
Confidence 999999999999999999998 9999999999999999653
No 18
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.37 E-value=2.4e-13 Score=111.68 Aligned_cols=82 Identities=28% Similarity=0.596 Sum_probs=68.4
Q ss_pred HhhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccc-----------cCcccccCCCCEEEEE
Q 026794 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-----------QDIRDILNEGDEVRVK 112 (233)
Q Consensus 49 ~~~~~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~-----------~~~~~~~~~Gd~V~vk 112 (233)
++....++.+|++++|+ +||+||+++ +.+||+|+|+++++++ ++..+.|++||.|+||
T Consensus 72 ~~~iv~~p~~Gev~~G~V~~v~~~G~fv~l~------~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~Vrvk 145 (180)
T 4ayb_E 72 FDMITYVPVVQEVVEGEVLQVDNYGVFVNLG------PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRAR 145 (180)
T ss_dssp EEEEEECCCTTCEEEEEEEEEETTEEEEECS------SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEE
T ss_pred hheeeeeccCCCEEEEEEeeeccceEEEEEC------CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEE
Confidence 45566789999999999 999999996 6899999999999877 4677889999999999
Q ss_pred EEEEeCC----CCeEEEEEec--cccChhh
Q 026794 113 VIKIDRE----KSRITLSIKQ--LEEDPLL 136 (233)
Q Consensus 113 Vi~vd~e----~~ri~LS~k~--~~~dp~~ 136 (233)
|+++|.+ ..||.||+|+ +-+.+|-
T Consensus 146 V~~v~~~~~~~~~rI~ls~k~~gLG~~~W~ 175 (180)
T 4ayb_E 146 VISVASTVTGRLPRIALTMRQPYLGKLEWI 175 (180)
T ss_dssp EEEECC-------CEEEECCSTTCEEHHHH
T ss_pred EEEEeCCCCcccCcEEEEcCCCCCCCChhH
Confidence 9999864 4589999998 4445564
No 19
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.35 E-value=7e-13 Score=109.47 Aligned_cols=81 Identities=25% Similarity=0.474 Sum_probs=69.2
Q ss_pred hhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCccccc-----------CcccccCCCCEEEEEE
Q 026794 50 NKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQ-----------DIRDILNEGDEVRVKV 113 (233)
Q Consensus 50 ~~~~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~-----------~~~~~~~~Gd~V~vkV 113 (233)
+.....+.+|+++.|+ +||+||+|. +.+||+|+|+++++++. ++.+.|++||.|+|+|
T Consensus 73 ~~i~~~~~~Gev~~G~V~~v~~~G~fV~l~------~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV 146 (187)
T 1go3_E 73 ETLVYIPEMYELIEGEVVDVVEFGSFVRLG------PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARI 146 (187)
T ss_dssp EEEEECCCTTCEEEEEEEEEETTEEEEECS------SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEE
T ss_pred EEEEEccCCCCEEEEEEEEEeCcEEEEEEc------CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEE
Confidence 3445678999999999 999999996 59999999999998875 7889999999999999
Q ss_pred EEEeCCCC-----eEEEEEecccc--Chhh
Q 026794 114 IKIDREKS-----RITLSIKQLEE--DPLL 136 (233)
Q Consensus 114 i~vd~e~~-----ri~LS~k~~~~--dp~~ 136 (233)
+++|.+++ +|.||+|+... .+|-
T Consensus 147 ~~vd~~~~~p~~~~I~lS~k~~~LG~~~w~ 176 (187)
T 1go3_E 147 VAISLKAERKRGSKIALTMRQPYLGKLEWI 176 (187)
T ss_dssp EEEECCC-----CEEEEECCSTTCEEHHHH
T ss_pred EEEEcccCCCCccEEEEEEcCCCCCcHHHH
Confidence 99998755 99999998544 4453
No 20
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.28 E-value=3.9e-12 Score=97.80 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=64.0
Q ss_pred ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEcccc-CcccccCcccccCCCCEEEEEEEEEeCCCCeEEEE
Q 026794 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEV-SWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (233)
Q Consensus 53 ~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sel-s~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS 126 (233)
...+++|++++|+ +||+||+|+. .+..||+|.++. +|.++.++.+.|++||.|+|+|+++|.++++|.||
T Consensus 16 ~~~l~~G~i~~G~V~~v~~fG~fV~l~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Ls 91 (119)
T 1wi5_A 16 AEALKPGMLLTGTVSSLEDHGYLVDIGV----DGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLS 91 (119)
T ss_dssp TTTCCTTCEEEEEEEEECSSEEEEECCC----SSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEE
T ss_pred HhcCCCCCEEEEEEEEEeCceEEEEECC----CCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEE
Confidence 4678999999999 9999999971 156777776664 35556688999999999999999999999999999
Q ss_pred EeccccC
Q 026794 127 IKQLEED 133 (233)
Q Consensus 127 ~k~~~~d 133 (233)
+|+....
T Consensus 92 lk~~~l~ 98 (119)
T 1wi5_A 92 VGHSEVS 98 (119)
T ss_dssp CCCCCSC
T ss_pred Echhhcc
Confidence 9976443
No 21
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.23 E-value=8.6e-12 Score=127.07 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=68.7
Q ss_pred ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCccc-ccCcccccCCCCEEEEEEEEEeCCCCeEEEE
Q 026794 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (233)
Q Consensus 53 ~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~-~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS 126 (233)
.+.+++|+++.|+ +||+||+|+ .|++||||+|+++|++ +.++.+.|++||.|+|+|+++|.++++|.||
T Consensus 897 ~~~l~~G~iv~G~V~~V~~fGaFV~L~-----~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LS 971 (1219)
T 3psi_A 897 EKTFFKGSIIPVRVERFWHNDIICTTN-----SEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVS 971 (1219)
T ss_dssp TTTSCTTCEEEEEEEEECSSCEEEECT-----TSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEE
T ss_pred HhhCCCCCEEEEEEEEEecceEEEEeC-----CCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEE
Confidence 4789999999999 999999997 4899999999999998 8999999999999999999999999999999
Q ss_pred Eecc
Q 026794 127 IKQL 130 (233)
Q Consensus 127 ~k~~ 130 (233)
+|+.
T Consensus 972 lk~~ 975 (1219)
T 3psi_A 972 LLDH 975 (1219)
T ss_dssp CCHH
T ss_pred ecHH
Confidence 9864
No 22
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=99.17 E-value=7.6e-12 Score=122.84 Aligned_cols=74 Identities=30% Similarity=0.585 Sum_probs=68.3
Q ss_pred ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEE
Q 026794 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (233)
Q Consensus 53 ~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~ 127 (233)
...+++|+++.|+ +||+||+|+ .+++||||+|+++|.++.++.+.|++||.|+|+|+++|.++++|.||+
T Consensus 649 ~~~l~vG~iv~G~V~~V~~fGaFV~l~-----~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSl 723 (785)
T 3bzc_A 649 LKDLKPGMVLEGVVTNVTNFGAFVDIG-----VHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSM 723 (785)
T ss_dssp STTCCTTCBCCCEEEEEETTEEEEECS-----SSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECC
T ss_pred hhhcCCCCEEEEEEEEEecCCeEEEeC-----CCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEE
Confidence 4568899999888 999999997 479999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 026794 128 KQLE 131 (233)
Q Consensus 128 k~~~ 131 (233)
|...
T Consensus 724 k~~~ 727 (785)
T 3bzc_A 724 RMSD 727 (785)
T ss_dssp SSCC
T ss_pred ecCC
Confidence 9654
No 23
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=99.15 E-value=4.5e-11 Score=97.39 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=72.7
Q ss_pred CCCCCCCC-CchhHhhhcccCCCCEEE--EE---EEEEe--C-CCCEEEEEech----hhHhhhccCCCCCCEEEEE---
Q 026794 2 SPSHSCKE-PQKSIHEIAKGLTGSIIS--VK---VIQAN--E-EMKKLVFSEKD----AVWNKYSSRVNVEDIFVGR--- 65 (233)
Q Consensus 2 ~~~~~~~~-p~~~~~~~~~~~vG~~v~--~~---Vi~id--~-~~~~i~lS~k~----~~~~~~~~~~~~G~vv~g~--- 65 (233)
+|++++.+ |+....+...+++|+.+. .+ +++++ . ..+.+.-.-.. ...+....+..+|++++|+
T Consensus 14 pp~~l~~~~p~~i~~~i~~~~i~~vig~~G~~I~~~di~~~di~~g~i~~~d~~~~~~~~~~~~~~~~~~Gev~~G~V~~ 93 (171)
T 1y14_B 14 HPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVS 93 (171)
T ss_dssp CTTSCSTTHHHHHHHHHHHHHTTEEETTTEEEEEECCGGGCBCC------------CEEEEEEEEECCCTTCEEEEEEEE
T ss_pred CHHHhCChHHHHHHHHHHHHHcCcCcCCceEEEEEEEecccccCccEEeCCCCCEEEEEEEEEEEccCCCCCEEEEEEEE
Confidence 46666533 555555556667776663 22 23333 2 13444422111 1133445678899999999
Q ss_pred --eeeEEEEEccCCCCccEEEEEEccccCcccccCc----------ccccCCCCEEEEEEEEEeCCCC
Q 026794 66 --DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI----------RDILNEGDEVRVKVIKIDREKS 121 (233)
Q Consensus 66 --~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~----------~~~~~~Gd~V~vkVi~vd~e~~ 121 (233)
+||+||+++ + .+||+|+|++++.+..++ ++.|++||.|+|||+++|.+++
T Consensus 94 v~~fG~FV~l~-----~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (171)
T 1y14_B 94 CSQHGFEVQVG-----P-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS 155 (171)
T ss_dssp EETTEEEEEET-----T-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETT
T ss_pred EecCEEEEEec-----C-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCC
Confidence 999999997 4 999999999986543222 2679999999999999998764
No 24
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.15 E-value=5.8e-11 Score=99.88 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=66.7
Q ss_pred cCCCCCCEEEEE-----eeeEEEEEccCCC---CccEEEEEEccccCccccc--CcccccCCCCEEEEEEEEEeCCCCeE
Q 026794 54 SRVNVEDIFVGR-----DYGAFIHLRFPDG---LYHLTGLVHVSEVSWDLIQ--DIRDILNEGDEVRVKVIKIDREKSRI 123 (233)
Q Consensus 54 ~~~~~G~vv~g~-----~~G~fV~l~~~~~---~~gv~Glv~~sels~~~~~--~~~~~~~~Gd~V~vkVi~vd~e~~ri 123 (233)
..+++|++|.|+ ++|+||+|.+.++ ..+.+|+||+||+++.+.. ++++.|++||.|+|+|++++.+++++
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeE
Confidence 367999999999 9999999963211 0257899999999999988 99999999999999999999877899
Q ss_pred EEEEecc
Q 026794 124 TLSIKQL 130 (233)
Q Consensus 124 ~LS~k~~ 130 (233)
.||+|+.
T Consensus 157 ~LS~k~~ 163 (209)
T 2nn6_I 157 LLTTAEN 163 (209)
T ss_dssp EEECCSS
T ss_pred EEEEecC
Confidence 9999975
No 25
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=99.13 E-value=4.8e-12 Score=127.19 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCccc-ccCcccccCCCCEEEEEEEEEeCCCCeEEEE
Q 026794 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDL-IQDIRDILNEGDEVRVKVIKIDREKSRITLS 126 (233)
Q Consensus 53 ~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~-~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS 126 (233)
.+.+++|+++.|+ +||+||+|+ .|++||||+|++++++ +.++.+.|++||.|+|+|+++|.+++||.||
T Consensus 900 ~~~l~~G~iv~G~V~~V~~fGaFV~L~-----~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LS 974 (1030)
T 3psf_A 900 EKTFFKGSIIPVRVERFWHNDIICTTN-----SEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVS 974 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCEEEEEEEEEccCeEEEEeC-----CCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEE
Confidence 3788999999999 999999997 4899999999999998 8999999999999999999999999999999
Q ss_pred Eeccc
Q 026794 127 IKQLE 131 (233)
Q Consensus 127 ~k~~~ 131 (233)
+|+..
T Consensus 975 lk~~d 979 (1030)
T 3psf_A 975 LLDHD 979 (1030)
T ss_dssp -----
T ss_pred echHH
Confidence 99743
No 26
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.12 E-value=1.3e-10 Score=95.51 Aligned_cols=70 Identities=27% Similarity=0.393 Sum_probs=60.7
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCC-----CccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEE
Q 026794 55 RVNVEDIFVGR-----DYGAFIHLRFPDG-----LYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRIT 124 (233)
Q Consensus 55 ~~~~G~vv~g~-----~~G~fV~l~~~~~-----~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~ 124 (233)
.++ |++|.|+ ++|+||+|...++ ..+.+|+||+|++++.++.++++.|++||.|+|+|++ +++.
T Consensus 55 ~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~ 128 (179)
T 3m7n_A 55 IVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLR 128 (179)
T ss_dssp CCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTE
T ss_pred cCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEE
Confidence 457 9999999 9999999973100 0168999999999999999999999999999999998 7899
Q ss_pred EEEecc
Q 026794 125 LSIKQL 130 (233)
Q Consensus 125 LS~k~~ 130 (233)
||+|+.
T Consensus 129 LS~k~~ 134 (179)
T 3m7n_A 129 LSTKEE 134 (179)
T ss_dssp EECCST
T ss_pred EEEecC
Confidence 999875
No 27
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.12 E-value=3.4e-11 Score=91.09 Aligned_cols=88 Identities=9% Similarity=0.119 Sum_probs=62.3
Q ss_pred EEEEeccccChhhHHhhhhcCCCCeeeecCCccccCCeeeeccCCChhhhhhhhcccCCeeEEE----eeccccccc---
Q 026794 124 TLSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQGFEKR--- 196 (233)
Q Consensus 124 ~LS~k~~~~dp~~~~~~~~~~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~~~~~--- 196 (233)
+-|+|++.+|||+.... .++.|++ ++|+|.++.++ |+|+++.+|++|+. +++.+++.+
T Consensus 11 ~~~iKq~~~~p~~~~~~-~~~~G~i--------v~G~V~~v~~~------G~fV~l~~~~~Gll~~sel~~~~~~~~~~~ 75 (109)
T 2khj_A 11 SSGLVPRGSHMFNNWVA-LNKKGAI--------VTGKVTAVDAK------GATVELADGVEGYLRASEASRDRVEDATLV 75 (109)
T ss_dssp ----------CHHHHTT-TCCSSSE--------EEEEEEEECSS------CEEEECSTTCBCCBCTTCCCSSSSSSGGGS
T ss_pred ccchhhcccCHHHHHhh-cCCCCCE--------EEEEEEEEECC------eEEEEECCCCEEEEEHHHcCcccccChhhc
Confidence 46899999999976655 4677887 67999999854 77888899999994 555554433
Q ss_pred -cccCceEEEEeecCCCCCEEEEEEccccee
Q 026794 197 -VVSQDLQLWLSNAPPSGKKFTLLARAGRCK 226 (233)
Q Consensus 197 -~vg~~~~v~i~~~d~~~~ki~Ls~r~~~~v 226 (233)
.+||.++|+|.++|.+++++.||.|+..+-
T Consensus 76 ~~vGd~V~v~V~~vd~~~~ki~LS~k~~~~~ 106 (109)
T 2khj_A 76 LSVGDEVEAKFTGVDRKNRAISLSVRAKDEA 106 (109)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEEETTSSSSC
T ss_pred cCCCCEEEEEEEEEECCCCEEEEEEeecChh
Confidence 589999999999999999999999986543
No 28
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=99.11 E-value=3.1e-11 Score=101.95 Aligned_cols=127 Identities=15% Similarity=0.107 Sum_probs=87.5
Q ss_pred CCCCCCC-CCchhHhhhcccCCCCEEE--E-EEEEEeCC-----CCEEEEEech-----hhHhhhccCCCCCCEEEEE--
Q 026794 2 SPSHSCK-EPQKSIHEIAKGLTGSIIS--V-KVIQANEE-----MKKLVFSEKD-----AVWNKYSSRVNVEDIFVGR-- 65 (233)
Q Consensus 2 ~~~~~~~-~p~~~~~~~~~~~vG~~v~--~-~Vi~id~~-----~~~i~lS~k~-----~~~~~~~~~~~~G~vv~g~-- 65 (233)
+|+++.. -|+....+...+++|+.+. . .|..+|-+ .+.+.-. .. ..........++|++++|+
T Consensus 14 pp~~~~~~~p~~i~~~I~~~~ig~vIg~~G~vI~~~dI~~~di~dG~I~~g-dg~~~~~v~~~~i~~~p~vGev~~G~V~ 92 (215)
T 2b8k_G 14 HPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPT-DGSAEFNVKYRAVVFKPFKGEVVDGTVV 92 (215)
T ss_dssp CGGGCSSSHHHHHHHHHHHSSTTCEETTTEEEEEECCSTTCBCCCEEECSS-SCCEEEEEECCEEEECCCTTEEEEEEEE
T ss_pred CHHHHChhHhHHHHhcCCHHHCCeEcCCCCEEEEEEEeeecccccceEeCC-CHHHHHHHHhhhheeccCCCCEEEEEEE
Confidence 4556643 3555556667778888875 3 33334444 3444311 11 1133445677999999999
Q ss_pred ---eeeEEEEEccCCCCccEEEEEEccccCcccccCcc----------cccCCCCEEEEEEEEEeCCCC---eEEEEEec
Q 026794 66 ---DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR----------DILNEGDEVRVKVIKIDREKS---RITLSIKQ 129 (233)
Q Consensus 66 ---~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~----------~~~~~Gd~V~vkVi~vd~e~~---ri~LS~k~ 129 (233)
+||+||+|+ + .+||||+|+|++.+..++. +.|++||.|+|+|+++|.+.+ +|. |+|+
T Consensus 93 ~vt~fG~FVelg-----~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~~Ig-Smk~ 165 (215)
T 2b8k_G 93 SCSQHGFEVQVG-----P-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAIG-SIKE 165 (215)
T ss_dssp EEETTEEEEECT-----T-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEEEE-ECCS
T ss_pred EEecceEEEEec-----C-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccEEEE-EcCC
Confidence 999999997 4 8999999999865443332 669999999999999998764 777 9988
Q ss_pred cccChhh
Q 026794 130 LEEDPLL 136 (233)
Q Consensus 130 ~~~dp~~ 136 (233)
...-||.
T Consensus 166 ~~LG~~~ 172 (215)
T 2b8k_G 166 DYLGAIS 172 (215)
T ss_dssp TTCEEC-
T ss_pred CCCCCcc
Confidence 7666664
No 29
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.98 E-value=8e-10 Score=89.94 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=56.7
Q ss_pred hccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCc------------ccccCCCCEEEEEEE
Q 026794 52 YSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI------------RDILNEGDEVRVKVI 114 (233)
Q Consensus 52 ~~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~------------~~~~~~Gd~V~vkVi 114 (233)
...+..+|++++|+ +||+||+|+ ..+||+|+|++++.+..++ .+.|++||.|+|||+
T Consensus 75 ~~~~~~~Gev~~G~V~~v~~fG~fV~l~------~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~ 148 (172)
T 2c35_B 75 IVFRPFKGEVVDAVVTQVNKVGLFTEIG------PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIV 148 (172)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEEET------TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEE
T ss_pred EEeeCCCCCEEEEEEEEEeCCEEEEEEC------CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEE
Confidence 35567899999999 999999996 5779999999986533222 457999999999999
Q ss_pred EEeCCCC---eEEEEEec
Q 026794 115 KIDREKS---RITLSIKQ 129 (233)
Q Consensus 115 ~vd~e~~---ri~LS~k~ 129 (233)
++|.+++ ++. |+|+
T Consensus 149 ~vd~~~~~~~~ig-sm~~ 165 (172)
T 2c35_B 149 GTRVDKNDIFAIG-SLMD 165 (172)
T ss_dssp EEEEETTEEEEEE-ECCS
T ss_pred EEEcCCCCcEEEE-EecC
Confidence 9998765 455 6654
No 30
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.91 E-value=1.1e-09 Score=98.12 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=79.0
Q ss_pred hcccCCCCEEEEEEEEEeCCCCEEEEEechhh--------HhhhccCCC--CCCEEEEE-----eeeEEEEEccCCCCcc
Q 026794 17 IAKGLTGSIISVKVIQANEEMKKLVFSEKDAV--------WNKYSSRVN--VEDIFVGR-----DYGAFIHLRFPDGLYH 81 (233)
Q Consensus 17 ~~~~~vG~~v~~~Vi~id~~~~~i~lS~k~~~--------~~~~~~~~~--~G~vv~g~-----~~G~fV~l~~~~~~~g 81 (233)
+++..+|+.+.+.|...|.. ++...+.|+.. .+.+++.|+ .|++++|+ ++|+||+++ +
T Consensus 84 d~~~~vGd~ie~~I~~~dfg-R~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlG------k 156 (344)
T 1hh2_P 84 DPLAEVGSIVKKELNVKNFG-RIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIG------K 156 (344)
T ss_dssp CTTCCTTCEEEEECCCCCSS-SCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEET------T
T ss_pred CccccCCCEEEEEEccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeC------C
Confidence 35668999999999887753 33444444432 223456665 89999999 889999996 7
Q ss_pred EEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeccccChhh
Q 026794 82 LTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLL 136 (233)
Q Consensus 82 v~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~~~dp~~ 136 (233)
.+|++|.+|++ |.+.|++||+|+|.|++++.+++...+++-...++...
T Consensus 157 ~EgiLp~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p~~lk 205 (344)
T 1hh2_P 157 LETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRVPEFVI 205 (344)
T ss_dssp EEEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESSSHHHHH
T ss_pred eEEEEeHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeeccHHHH
Confidence 99999999996 56789999999999999997665444444444444443
No 31
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.88 E-value=2.1e-09 Score=92.78 Aligned_cols=71 Identities=25% Similarity=0.359 Sum_probs=63.6
Q ss_pred cCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccc---cCcccccCCCCEEEEEEEEEeCCCCeEEE
Q 026794 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI---QDIRDILNEGDEVRVKVIKIDREKSRITL 125 (233)
Q Consensus 54 ~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~---~~~~~~~~~Gd~V~vkVi~vd~e~~ri~L 125 (233)
..+++|++|.|+ ++|+||+|+ .+.+|+||+|++++.+. .++++.|++||.|.|+|++++. .+++.|
T Consensus 70 y~p~~GDiV~G~V~~v~~~ga~VdI~-----~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~L 143 (251)
T 2je6_I 70 YYPKINDIVIGLVEDVEIYGWVVDIK-----APYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVL 143 (251)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECS-----SSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEE
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEcC-----CCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEE
Confidence 356999999999 899999997 37899999999998887 8899999999999999999996 579999
Q ss_pred EEecc
Q 026794 126 SIKQL 130 (233)
Q Consensus 126 S~k~~ 130 (233)
|+|+.
T Consensus 144 S~r~~ 148 (251)
T 2je6_I 144 SVKGK 148 (251)
T ss_dssp ECCST
T ss_pred EEccc
Confidence 98753
No 32
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.87 E-value=9.2e-10 Score=83.99 Aligned_cols=85 Identities=8% Similarity=0.034 Sum_probs=57.9
Q ss_pred EEEeccccChhhHHhhhhcCCCCeeeecCCccccCCeeeeccCCChhhhhhhhcccCCeeEEE----eecc-ccccc---
Q 026794 125 LSIKQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQ-GFEKR--- 196 (233)
Q Consensus 125 LS~k~~~~dp~~~~~~~~~~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~-~~~~~--- 196 (233)
-|+|++..+||+... ..++.|++ +.|+|+.+++ +|+|+++++|++|+. ++++ +.+++
T Consensus 11 ~~~k~~~~~p~~~~~-~~~~~G~~--------~~G~V~~v~~------~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~ 75 (115)
T 2khi_A 11 SSGLVPRGSHWVAIA-KRYPEGTK--------LTGRVTNLTD------YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKV 75 (115)
T ss_dssp ----------CCCSS-CSSCSSCE--------EEEEEEEEET------TEEEEECSTTCEEEEETTSSSCSSTTCSSTTT
T ss_pred cchhhcccCCHHHHh-hcCCCCCE--------EEEEEEEEEC------CEEEEEECCCCEEEEEHHHCCccccccCcccE
Confidence 489999999997543 34677887 6799999885 477888899999995 4442 22222
Q ss_pred -cccCceEEEEeecCCCCCEEEEEEcccc
Q 026794 197 -VVSQDLQLWLSNAPPSGKKFTLLARAGR 224 (233)
Q Consensus 197 -~vg~~~~v~i~~~d~~~~ki~Ls~r~~~ 224 (233)
.+||.++|+|.++|.+++||.||.|+..
T Consensus 76 ~~vGd~V~vkV~~vd~~~~rI~lslk~~~ 104 (115)
T 2khi_A 76 VNVGDVVEVMVLDIDEERRRISLGLKQCK 104 (115)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCEEEEEEEEEECCCCEEEEEEEecC
Confidence 5799999999999999999999998653
No 33
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.86 E-value=1e-09 Score=89.54 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=56.9
Q ss_pred HhhhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCc----------ccccCCCCEEEEEE
Q 026794 49 WNKYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDI----------RDILNEGDEVRVKV 113 (233)
Q Consensus 49 ~~~~~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~----------~~~~~~Gd~V~vkV 113 (233)
.+.+..+..+|++++|+ +||+||+++ .++||+|+|++++.+..++ .+.|++||.|+|||
T Consensus 75 f~~ivf~p~~Gev~~G~V~~v~~fG~FV~l~------~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV 148 (172)
T 3h0g_G 75 YRAVLWRPFRGEVVDAIVTTVNKMGFFANIG------PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKI 148 (172)
T ss_dssp EEEEEECCCTTCEEECCCCEEETTEEECCBT------TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEE
T ss_pred EEEeeeccCCCCEEEEEEEEEEcceEEEEeC------CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEE
Confidence 44556788999999999 999999996 5789999999986654443 56899999999999
Q ss_pred EEEeCCCCe
Q 026794 114 IKIDREKSR 122 (233)
Q Consensus 114 i~vd~e~~r 122 (233)
+++|.+.++
T Consensus 149 ~~vd~~~~~ 157 (172)
T 3h0g_G 149 VGTRTDATE 157 (172)
T ss_dssp EEEEESSSC
T ss_pred EEEECCCCC
Confidence 999987744
No 34
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.85 E-value=2.3e-09 Score=91.64 Aligned_cols=71 Identities=17% Similarity=0.325 Sum_probs=62.0
Q ss_pred cCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcc----cccCcccccCCCCEEEEEEEEEeCCCCeEE
Q 026794 54 SRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD----LIQDIRDILNEGDEVRVKVIKIDREKSRIT 124 (233)
Q Consensus 54 ~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~----~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~ 124 (233)
..+++|++|.|+ ++|+||+|+ .+.+|++|+|+++.+ +..++++.|++||.|.|+|++++. .+++.
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~-----~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~ 135 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDIN-----SPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPL 135 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECS-----SSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEE
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeC-----CCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEE
Confidence 357999999999 899999997 378999999999873 457889999999999999999996 56899
Q ss_pred EEEecc
Q 026794 125 LSIKQL 130 (233)
Q Consensus 125 LS~k~~ 130 (233)
||+|+.
T Consensus 136 LS~k~~ 141 (235)
T 2z0s_A 136 LTVQGE 141 (235)
T ss_dssp EECCSS
T ss_pred EEEecc
Confidence 998753
No 35
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.81 E-value=9.5e-09 Score=87.45 Aligned_cols=70 Identities=26% Similarity=0.356 Sum_probs=62.7
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcc-cccCcccccCCCCEEEEEEEEEeCCCCeEEEEEe
Q 026794 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD-LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (233)
Q Consensus 55 ~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~-~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k 128 (233)
.+++||+|.|+ ++|+||+|+ .+.+|++|+|+++.. +..++++.|++||.|.|+|++++. .+++.||+|
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~-----~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r 127 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIY-----SPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMK 127 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECS-----SSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECC
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeC-----CCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEc
Confidence 47999999999 899999997 368999999999974 678899999999999999999996 579999987
Q ss_pred cc
Q 026794 129 QL 130 (233)
Q Consensus 129 ~~ 130 (233)
+.
T Consensus 128 ~~ 129 (229)
T 2ba0_A 128 DR 129 (229)
T ss_dssp SS
T ss_pred cc
Confidence 63
No 36
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.44 E-value=3.1e-07 Score=88.75 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=57.9
Q ss_pred CCCCCC--EEEEE-----eeeEEEEEccCCCCccEEEEEEccccCc--ccc--c--------CcccccCCCCEEEEEEEE
Q 026794 55 RVNVED--IFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSW--DLI--Q--------DIRDILNEGDEVRVKVIK 115 (233)
Q Consensus 55 ~~~~G~--vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~--~~~--~--------~~~~~~~~Gd~V~vkVi~ 115 (233)
.-++|+ +++|+ +||+||+|.+ +|++||||+|++++ +++ . +....|++||.|+|+|++
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~----~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~ 630 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVD----NGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAE 630 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETT----TCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEE
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcC----CcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEE
Confidence 447888 88887 9999999953 48999999999973 331 1 345679999999999999
Q ss_pred EeCCCCeEEEEEe
Q 026794 116 IDREKSRITLSIK 128 (233)
Q Consensus 116 vd~e~~ri~LS~k 128 (233)
+|.++++|.|++-
T Consensus 631 vd~~~~~I~~~l~ 643 (644)
T 2id0_A 631 VRMETRSIIARPV 643 (644)
T ss_dssp EETTTTEEEEEEC
T ss_pred EeCCCCEEEEEEc
Confidence 9999999999873
No 37
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.40 E-value=1.3e-07 Score=77.22 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=52.1
Q ss_pred hhcC-CCCeeeecCCccccCCeeeeccCCChhhhhhhhccc--CCeeEEE----eeccccccc----cccCceEEEEeec
Q 026794 141 KVIP-QDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE--DGIDDVR----ITRQGFEKR----VVSQDLQLWLSNA 209 (233)
Q Consensus 141 ~~~~-~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~~--~gv~gl~----~~~~~~~~~----~vg~~~~v~i~~~ 209 (233)
..++ .|++ +.|+|++++ +||+|+++. +|++||. +++.++.++ .+||.++|+|.++
T Consensus 10 ~~~p~~G~i--------v~G~V~~i~------~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~v 75 (175)
T 2a19_A 10 NKYPEIDDI--------VMVNVQQIA------EMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRV 75 (175)
T ss_dssp SSSCCTTCE--------EEEEEEEEE------TTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEE
T ss_pred hcCCCCCCE--------EEEEEEEEe------cceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEE
Confidence 3444 6777 679999888 458888885 8999994 777777665 5799999999999
Q ss_pred CCCCCEEEEEEcccc
Q 026794 210 PPSGKKFTLLARAGR 224 (233)
Q Consensus 210 d~~~~ki~Ls~r~~~ 224 (233)
|++++||+||+|+..
T Consensus 76 d~~~~~I~LSlk~~~ 90 (175)
T 2a19_A 76 DKEKGYIDLSKRRVS 90 (175)
T ss_dssp ETTTTEEEEESTTCC
T ss_pred ECCCCeEEEEEEecC
Confidence 999999999998754
No 38
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.39 E-value=4.1e-07 Score=64.62 Aligned_cols=62 Identities=8% Similarity=0.036 Sum_probs=50.3
Q ss_pred ccCCeeeeccCCChhhhhhhhcccCCeeEEE----eeccccccccccCceEEEEeecCCCCCEEEEEEcccc
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGR 224 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~~~~~~vg~~~~v~i~~~d~~~~ki~Ls~r~~~ 224 (233)
++|+|.++++ +|+|+++++|++|+. +++.+++.-.+||.++++|.++|.+++|++||.++..
T Consensus 9 v~G~V~~v~~------~G~fV~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~ 74 (80)
T 2k52_A 9 YKGVVTRIEK------YGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDFKYIPLE 74 (80)
T ss_dssp EEEEEEEEET------TEEEEEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTTEEEEEECSCC
T ss_pred EEEEEEEEeC------CEEEEEECCCCEEEEEHHHCCcccceeeCCCCEEEEEEEEEECCCCEEEEEEeecc
Confidence 7799999885 478888899999995 4443332236899999999999999999999998754
No 39
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.37 E-value=2.1e-07 Score=76.43 Aligned_cols=67 Identities=9% Similarity=0.047 Sum_probs=50.5
Q ss_pred CCCCeeeecCCccccCCeeeeccCCChhhhhhhhcc--cCCeeEEE----eeccccccc----cccCceEEEEeecCCCC
Q 026794 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ--EDGIDDVR----ITRQGFEKR----VVSQDLQLWLSNAPPSG 213 (233)
Q Consensus 144 ~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~--~~gv~gl~----~~~~~~~~~----~vg~~~~v~i~~~d~~~ 213 (233)
+.|++ +.|+|+++++ ||+|+++ .+|++||. +++.++.++ .+||.++|+|.++|.++
T Consensus 14 ~~G~i--------v~G~V~~I~~------fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~ 79 (182)
T 1kl9_A 14 EVEDV--------VMVNVRSIAE------MGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEK 79 (182)
T ss_dssp CTTCE--------EEEEEEEECS------SEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTT
T ss_pred CCCCE--------EEEEEEEEec------cEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCC
Confidence 56776 7799999885 5888888 58999994 777777665 58999999999999999
Q ss_pred CEEEEEEcccc
Q 026794 214 KKFTLLARAGR 224 (233)
Q Consensus 214 ~ki~Ls~r~~~ 224 (233)
+||+||+|+..
T Consensus 80 ~rI~LSlk~~~ 90 (182)
T 1kl9_A 80 GYIDLSKRRVS 90 (182)
T ss_dssp TEEEEESTTCC
T ss_pred CEEEEEEeecC
Confidence 99999998754
No 40
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.31 E-value=2.2e-08 Score=98.14 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=47.5
Q ss_pred eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeccccChhhHHhhhhcCC
Q 026794 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLETLEKVIPQ 145 (233)
Q Consensus 66 ~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~~~dp~~~~~~~~~~~ 145 (233)
++|+||+++ -+|.+|+|..+|...+...+. + +.+ .+|+ .+++
T Consensus 626 ~~G~~IdI~-------~dG~v~Is~~~~~~~~~a~~~--------------------i----~~i-~~p~------~~~v 667 (757)
T 1e3p_A 626 DTGAEITIE-------DDGTIYIGAADGPAAEAARAT--------------------I----NGI-ANPT------SPEV 667 (757)
T ss_dssp CCCSCC---------------CCCBSSHHHHCC-----------------------------------------------
T ss_pred hhCCEEEec-------CCceEEEecCCHHHHHHHHHH--------------------H----HHh-cchh------hccc
Confidence 899999996 379999999988654332111 1 111 1342 2456
Q ss_pred CCeeeecCCccccCCeeeeccCCChhhhhhhhcccCCeeEE----Ee----eccccccc----cccCceEEEEeecCCCC
Q 026794 146 DGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDV----RI----TRQGFEKR----VVSQDLQLWLSNAPPSG 213 (233)
Q Consensus 146 g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl----~~----~~~~~~~~----~vg~~~~v~i~~~d~~~ 213 (233)
|++ ++|+|+++++ ||+|+++.+|++|| ++ ++++++++ .+||.++|+|.++|. +
T Consensus 668 G~i--------~~G~V~~i~~------fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~ 732 (757)
T 1e3p_A 668 GER--------ILGSVVKTTT------FGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-R 732 (757)
T ss_dssp -------------CBEEECC-------CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCS-S
T ss_pred ccE--------EEEEEEEccc------cEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-C
Confidence 776 7799999884 58889889999999 37 77777665 589999999999998 9
Q ss_pred CEEEEEEcccc
Q 026794 214 KKFTLLARAGR 224 (233)
Q Consensus 214 ~ki~Ls~r~~~ 224 (233)
+||+||.|+..
T Consensus 733 grI~LS~k~~~ 743 (757)
T 1e3p_A 733 GKLSLIPVIEG 743 (757)
T ss_dssp CC---------
T ss_pred CCEEEEEecCC
Confidence 99999998654
No 41
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.30 E-value=2.6e-07 Score=67.17 Aligned_cols=62 Identities=2% Similarity=-0.105 Sum_probs=48.6
Q ss_pred ccCCeeeeccCCChhhhhhhhccc--CCeeEEE-ee----ccccccc---cccCceEEEEeecCCCCCEEEEEEcccce
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQE--DGIDDVR-IT----RQGFEKR---VVSQDLQLWLSNAPPSGKKFTLLARAGRC 225 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~--~gv~gl~-~~----~~~~~~~---~vg~~~~v~i~~~d~~~~ki~Ls~r~~~~ 225 (233)
..|+|+ +++| |+|++++ +|++||. +| +++++.+ .+||.++|++.++|.+++||+||.|+..+
T Consensus 15 ~~G~V~-v~~f------G~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~kI~lslk~~~~ 86 (88)
T 1luz_A 15 IKGRVY-EKDY------ALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKLVGKTVKVKVIRVDYTKGYIDVNYKRMCR 86 (88)
T ss_dssp EEEEEE-EETT------EEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECS
T ss_pred EEEEEE-EEcc------EEEEEECCCCCeEEEEEeeHHhCcccccCHhHEeCCCEEEEEEEEEECCCCEEEEEEeecCC
Confidence 779999 8854 7778777 4899995 44 4443332 48999999999999999999999997544
No 42
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=2.9e-07 Score=70.56 Aligned_cols=81 Identities=7% Similarity=-0.038 Sum_probs=61.1
Q ss_pred ccccChhhHHhhhhcCCCCeeeecCCccccCCeeeeccCCChhhhhhhhcccC-CeeEEE----eeccccccc----ccc
Q 026794 129 QLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQED-GIDDVR----ITRQGFEKR----VVS 199 (233)
Q Consensus 129 ~~~~dp~~~~~~~~~~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~~~-gv~gl~----~~~~~~~~~----~vg 199 (233)
.+.+++|+. +...+..|++ +.|+|+++++ ||+|+++.+ +++||. +++.+++++ .+|
T Consensus 7 ~~~~~~~~~-~~~~~~vG~i--------v~G~V~~I~~------fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~G 71 (119)
T 2cqo_A 7 GMNSGRPET-MENLPALYTI--------FQGEVAMVTD------YGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVG 71 (119)
T ss_dssp CSCCCCCCC-SCCSCCTTCE--------EEEEEEEEET------TEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTT
T ss_pred cccccchhh-hhcccCCCCE--------EEEEEEEEeC------ceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCC
Confidence 457888864 4444677777 6799999985 478888854 369995 666655443 589
Q ss_pred CceEEEEeecCCCC--CEEEEEEcccc
Q 026794 200 QDLQLWLSNAPPSG--KKFTLLARAGR 224 (233)
Q Consensus 200 ~~~~v~i~~~d~~~--~ki~Ls~r~~~ 224 (233)
|.+.|+|.++|.++ +||+||+|...
T Consensus 72 d~V~VkV~~vd~~~~~~~i~LSlk~~~ 98 (119)
T 2cqo_A 72 DKVWVKLIGREMKNDRIKVSLSMKVVN 98 (119)
T ss_dssp CEEEEEEEEEEECSSCEEEEEESTTBC
T ss_pred CEEEEEEEEEeccccCceEEEEEeecc
Confidence 99999999999864 79999998754
No 43
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.23 E-value=1.9e-06 Score=71.80 Aligned_cols=62 Identities=11% Similarity=0.212 Sum_probs=52.7
Q ss_pred ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccc-------------------cCcccccCCCCE
Q 026794 53 SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-------------------QDIRDILNEGDE 108 (233)
Q Consensus 53 ~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~-------------------~~~~~~~~~Gd~ 108 (233)
.-+..+|++++|+ ++|+||+|+ .++|++|.+++.+++. ++....|++||.
T Consensus 76 ~f~p~~GEv~~G~Vs~vt~~GifV~lg------~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~ 149 (203)
T 3ayh_B 76 IFRPFRGEVMLGKIKSCSEEGIRVTIS------FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEE 149 (203)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS------SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCE
T ss_pred EEccCCCCEEEEEEEEEeccEEEEEEe------CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCE
Confidence 4567899999999 999999995 6899999999987654 445667999999
Q ss_pred EEEEEEEEeCCC
Q 026794 109 VRVKVIKIDREK 120 (233)
Q Consensus 109 V~vkVi~vd~e~ 120 (233)
|++||.+++...
T Consensus 150 VrvrV~~v~~~~ 161 (203)
T 3ayh_B 150 IRFQIESEDFVD 161 (203)
T ss_dssp EEEEEEEEEECC
T ss_pred EEEEEEEEEccc
Confidence 999999998643
No 44
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.22 E-value=7.4e-07 Score=69.23 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=50.1
Q ss_pred ccCCeeeeccCCChhhhhhhhcccCCeeEEE----eeccccccc----cccCceEEEEeecCCCCCEEEEEEccc
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQGFEKR----VVSQDLQLWLSNAPPSGKKFTLLARAG 223 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~~~~~----~vg~~~~v~i~~~d~~~~ki~Ls~r~~ 223 (233)
+.|+|+.+++ +|+|+++.+|++|+. +++.++..+ .+||.++|+|.++|.++++|.||.|+.
T Consensus 11 v~G~V~~i~~------~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~ 79 (130)
T 2k4k_A 11 YTGKVTGLQA------YGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRAT 79 (130)
T ss_dssp EEEEEEEEET------TEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHH
T ss_pred EEEEEEEEeC------CeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeec
Confidence 6799999885 478888899999995 455444333 589999999999999999999999864
No 45
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=98.19 E-value=3.2e-06 Score=76.11 Aligned_cols=85 Identities=9% Similarity=0.150 Sum_probs=61.2
Q ss_pred hhhccCCC--CCCEEEEE--e-------eeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeC
Q 026794 50 NKYSSRVN--VEDIFVGR--D-------YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDR 118 (233)
Q Consensus 50 ~~~~~~~~--~G~vv~g~--~-------~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~ 118 (233)
+..+..|+ +|++++|+ . +++||+|++.+ .+.+|++|.+|+. |.+.|++||.|+|.|++++.
T Consensus 120 ~~i~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~--~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~ 191 (366)
T 1k0r_A 120 ERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTET--KASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTR 191 (366)
T ss_dssp -------CCCTTCEEEEEEECCHHHHHTTCEEEEECCSS--SCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCc--cceEEEEcHHHcC------CCccCCCCCEEEEEEEEEec
Confidence 34555665 99999999 2 58999997200 1499999999986 46889999999999999998
Q ss_pred CCCeEEEEEeccccChhhHHhhhh
Q 026794 119 EKSRITLSIKQLEEDPLLETLEKV 142 (233)
Q Consensus 119 e~~ri~LS~k~~~~dp~~~~~~~~ 142 (233)
+++...+.+..+.++.....++.-
T Consensus 192 ~~kgpqI~LSRT~p~lv~~Lfe~E 215 (366)
T 1k0r_A 192 GAREPLITLSRTHPNLVRKLFSLE 215 (366)
T ss_dssp CSSSCEEEEESSCHHHHHHHHHHH
T ss_pred CCCccEEEEEeCChHHHHHHHHhc
Confidence 876667777777776665555543
No 46
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.18 E-value=2e-06 Score=64.00 Aligned_cols=70 Identities=23% Similarity=0.283 Sum_probs=49.1
Q ss_pred CCCEEEEEEEEEeCCCCEEEEE-----------echhhHhhh-ccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEE
Q 026794 22 TGSIISVKVIQANEEMKKLVFS-----------EKDAVWNKY-SSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTG 84 (233)
Q Consensus 22 vG~~v~~~Vi~id~~~~~i~lS-----------~k~~~~~~~-~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~G 84 (233)
.++.++.+|..+|.+++-=.+. ..+..+..+ ...+++|+++++. +||+||+|. .+++|
T Consensus 13 ~~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~fG~fv~l~-----~~~eG 87 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGIFIGLD-----GGIDG 87 (101)
T ss_dssp ---CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEEEECTT-----SCEEE
T ss_pred ccccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCCcEEEEEcC-----CCceE
Confidence 5777888888887654422222 222223322 2689999999998 899999997 38999
Q ss_pred EEEccccCcccc
Q 026794 85 LVHVSEVSWDLI 96 (233)
Q Consensus 85 lv~~sels~~~~ 96 (233)
|||+|+++|.++
T Consensus 88 lvhis~i~~~~~ 99 (101)
T 2bh8_A 88 LVHLSDISWAQA 99 (101)
T ss_dssp EEEEEEEEECCC
T ss_pred EEEHHHCccCcC
Confidence 999999999875
No 47
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.18 E-value=2.1e-06 Score=80.75 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=61.2
Q ss_pred hhhccCCCCCCEEEEE-----ee--eEEEEEccCCCCccEEEEEEccccCcccc---------cCcccccCCCCEEEEEE
Q 026794 50 NKYSSRVNVEDIFVGR-----DY--GAFIHLRFPDGLYHLTGLVHVSEVSWDLI---------QDIRDILNEGDEVRVKV 113 (233)
Q Consensus 50 ~~~~~~~~~G~vv~g~-----~~--G~fV~l~~~~~~~gv~Glv~~sels~~~~---------~~~~~~~~~Gd~V~vkV 113 (233)
+.......+|++|.|+ ++ ||||+++ +|..||+|+|+++|.++ .++.+.+++||.|.|+|
T Consensus 37 E~~~~~~~vGnIY~GkV~rv~p~~~aAFVdiG-----~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV 111 (517)
T 2bx2_L 37 ESPGHEQKKANIYKGKITRIEPSLEAAFVDYG-----AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQI 111 (517)
T ss_dssp ECSSSCCCTTCEEEEEEEEEETTTTEEEEESS-----SSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEE
T ss_pred ecCCCcCCCCCEEEEEEEEeccCCceEEEEeC-----CCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEE
Confidence 3344567899999999 77 9999998 48899999999998874 34678899999999999
Q ss_pred EEEeCCCCeEEEEEec
Q 026794 114 IKIDREKSRITLSIKQ 129 (233)
Q Consensus 114 i~vd~e~~ri~LS~k~ 129 (233)
++....++...||..-
T Consensus 112 ~Ke~~g~KGa~lTt~i 127 (517)
T 2bx2_L 112 DKEERGNKGAALTTFI 127 (517)
T ss_dssp EECCCTTCCCEEESSC
T ss_pred EeeccccCCceEEeeE
Confidence 9988776666666543
No 48
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.16 E-value=2.5e-07 Score=90.34 Aligned_cols=66 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred cCCCCeeeecCCccccCCeeeeccCCChhhhhhhhcccCCeeEE----Eeeccccccc----cccCceEEEEeecCCCCC
Q 026794 143 IPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDV----RITRQGFEKR----VVSQDLQLWLSNAPPSGK 214 (233)
Q Consensus 143 ~~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl----~~~~~~~~~~----~vg~~~~v~i~~~d~~~~ 214 (233)
+++|++ ++|+|+++. +||+|+++.+|++|| ++++++++++ .+||.++|++.++|. ++
T Consensus 625 ~~vG~i--------~~G~V~~i~------~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~g 689 (723)
T 3cdi_A 625 IEVGRV--------YTGKVTRIV------DFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QG 689 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcCcE--------EEEEEEEEe------cceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CC
Confidence 455666 679998887 568889889999998 3777777655 589999999999998 89
Q ss_pred EEEEEEccc
Q 026794 215 KFTLLARAG 223 (233)
Q Consensus 215 ki~Ls~r~~ 223 (233)
||+||+|+.
T Consensus 690 rI~LS~k~~ 698 (723)
T 3cdi_A 690 RIRLSIKEA 698 (723)
T ss_dssp ---------
T ss_pred cEEEEEEec
Confidence 999999865
No 49
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.11 E-value=2.3e-06 Score=84.12 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=47.1
Q ss_pred CEEEEE-----eeeEEEEEccCCCCccEEEEEEccccC--cccc-----------cC----cccccCCCCEEEEEEEEEe
Q 026794 60 DIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS--WDLI-----------QD----IRDILNEGDEVRVKVIKID 117 (233)
Q Consensus 60 ~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels--~~~~-----------~~----~~~~~~~Gd~V~vkVi~vd 117 (233)
++++|+ +||+||.|.. .|++||||+|+++ .+++ .+ ....|++||.|+|+|+.+|
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~----~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd 746 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPK----FGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVM 746 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETT----TTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC---
T ss_pred eEEEEEEEEEECCeEEEEEeC----CCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEE
Confidence 688887 9999999973 4899999999996 4431 12 2578999999999999999
Q ss_pred CC---CCeEEEEEe
Q 026794 118 RE---KSRITLSIK 128 (233)
Q Consensus 118 ~e---~~ri~LS~k 128 (233)
.+ ++||.||+|
T Consensus 747 ~~~~~~~kI~lslk 760 (760)
T 2vnu_D 747 DPITSKRKAELLLK 760 (760)
T ss_dssp -----CCEEEC---
T ss_pred CccccCCcEEEEeC
Confidence 87 699999986
No 50
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.06 E-value=4.6e-06 Score=70.30 Aligned_cols=116 Identities=9% Similarity=0.136 Sum_probs=72.6
Q ss_pred CCCCCCCCCCchhHhhhccc-CCCCEEE-----EEEEEEeC-CCCEEEEE----echhhHhhhccCCCCCCEEEEE----
Q 026794 1 MSPSHSCKEPQKSIHEIAKG-LTGSIIS-----VKVIQANE-EMKKLVFS----EKDAVWNKYSSRVNVEDIFVGR---- 65 (233)
Q Consensus 1 ~~~~~~~~~p~~~~~~~~~~-~vG~~v~-----~~Vi~id~-~~~~i~lS----~k~~~~~~~~~~~~~G~vv~g~---- 65 (233)
|+|+++.++....+.+.++. +.|+.+. ..|.++.. ..++|.-. .-........-+..+|++++|+
T Consensus 13 I~P~~f~~~l~~~i~~~L~~kyegkv~~~~Gl~I~v~di~~i~eG~I~~GdG~~~~~V~fk~~~f~p~vGEv~~G~Is~V 92 (218)
T 2ckz_B 13 IPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKC 92 (218)
T ss_dssp ECGGGTTSCHHHHHHHHHHHHHTTEEETTTEEEEEEEEEEEECCCEECSSSSCEEEEEEEEEEEECCCTTCEEEEEEEEE
T ss_pred ECHHHcCchHHHHHHHHHHHHhcCcCcCCccEEEEEEEeeeccCcEEeCCCCCEEEEEEEEEEEecCCCCCEEEEEEEEE
Confidence 35666655555545444433 4455432 33344432 23333210 0001122335567899999999
Q ss_pred -eeeEEEEEccCCCCccEEEEEEccccCcccc--------------cCcccccCCCCEEEEEEEEEeCCCC
Q 026794 66 -DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI--------------QDIRDILNEGDEVRVKVIKIDREKS 121 (233)
Q Consensus 66 -~~G~fV~l~~~~~~~gv~Glv~~sels~~~~--------------~~~~~~~~~Gd~V~vkVi~vd~e~~ 121 (233)
+||+||+|.+ .++|++|++++..++. ++....|++||.|++||.++|...+
T Consensus 93 t~fGifVeL~g-----~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~ 158 (218)
T 2ckz_B 93 TAEGIKVSLLG-----IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDV 158 (218)
T ss_dssp ETTEEEEECTT-----SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCC
T ss_pred ccCcEEEEccC-----ccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccC
Confidence 9999999953 5899999999976653 3345669999999999999997554
No 51
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.04 E-value=2.9e-06 Score=64.71 Aligned_cols=68 Identities=12% Similarity=0.021 Sum_probs=52.8
Q ss_pred cCCCCeeeecCCccccCCeeeeccCCChhhhhhhhccc-CCeeEEEeeccc-----cccc----cccCceEEEEeecCCC
Q 026794 143 IPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE-DGIDDVRITRQG-----FEKR----VVSQDLQLWLSNAPPS 212 (233)
Q Consensus 143 ~~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~~-~gv~gl~~~~~~-----~~~~----~vg~~~~v~i~~~d~~ 212 (233)
++.|++ +.|+|.++++| |+|+++. +++.+++++... ..++ .+||.++|+|.++|.+
T Consensus 19 l~~G~i--------~~G~V~~v~~f------G~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~ 84 (119)
T 1wi5_A 19 LKPGML--------LTGTVSSLEDH------GYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGN 84 (119)
T ss_dssp CCTTCE--------EEEEEEEECSS------EEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTT
T ss_pred CCCCCE--------EEEEEEEEeCc------eEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCC
Confidence 567777 67999998854 7777777 688888765532 1122 5899999999999999
Q ss_pred CCEEEEEEcccc
Q 026794 213 GKKFTLLARAGR 224 (233)
Q Consensus 213 ~~ki~Ls~r~~~ 224 (233)
++|+.|+.+...
T Consensus 85 ~~~i~Lslk~~~ 96 (119)
T 1wi5_A 85 GGVVSLSVGHSE 96 (119)
T ss_dssp SCEEEEECCCCC
T ss_pred CCEEEEEEchhh
Confidence 999999998654
No 52
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.03 E-value=3.7e-06 Score=84.59 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=54.8
Q ss_pred CCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccC--cccc-----------cC----cccccCCCCEEEEEEEEE
Q 026794 59 EDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVS--WDLI-----------QD----IRDILNEGDEVRVKVIKI 116 (233)
Q Consensus 59 G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels--~~~~-----------~~----~~~~~~~Gd~V~vkVi~v 116 (233)
|++++|+ +||+||.|.. .|++|+||+|+++ .+++ .+ ....|++||.|+|+|..+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~----~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~v 962 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPK----FGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSV 962 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTT----TCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCC
T ss_pred ceEEEEEEEEEcCCeEEEEEcC----CCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEE
Confidence 8899998 9999999973 4899999999997 4431 12 357899999999999999
Q ss_pred eCC---CCeEEEEEe
Q 026794 117 DRE---KSRITLSIK 128 (233)
Q Consensus 117 d~e---~~ri~LS~k 128 (233)
|.+ ++||.||+|
T Consensus 963 d~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 963 MDPITSKRKAELLLK 977 (977)
T ss_dssp CCSSSCCCCCCEEEC
T ss_pred cCcccCCCceEEEeC
Confidence 874 489999987
No 53
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=97.90 E-value=7.6e-06 Score=71.29 Aligned_cols=67 Identities=10% Similarity=-0.001 Sum_probs=55.2
Q ss_pred CCCCeeeecCCccccCCeeeeccCCChhhhhhhhccc--CCeeEEE----eeccccccc----cccCceEEEEeecCCCC
Q 026794 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQE--DGIDDVR----ITRQGFEKR----VVSQDLQLWLSNAPPSG 213 (233)
Q Consensus 144 ~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~~--~gv~gl~----~~~~~~~~~----~vg~~~~v~i~~~d~~~ 213 (233)
+.|++ +.|+|+++.+ +|+|+++. +|++|+. +++.++.++ .+||.+.|+|.++|+++
T Consensus 10 ~~Gdi--------v~G~V~~I~~------fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~ 75 (275)
T 3aev_A 10 EEGEF--------VVATVKRIHN------YGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRK 75 (275)
T ss_dssp CTTCE--------EEEEEEEEET------TEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTT
T ss_pred CCCCE--------EEEEEEEEEC------cEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCC
Confidence 36777 6799999884 57888888 6999995 666666544 58999999999999999
Q ss_pred CEEEEEEcccc
Q 026794 214 KKFTLLARAGR 224 (233)
Q Consensus 214 ~ki~Ls~r~~~ 224 (233)
++++||+|+..
T Consensus 76 ~~I~LSlk~~~ 86 (275)
T 3aev_A 76 GHIDLSLRRVT 86 (275)
T ss_dssp TEEEEESTTCC
T ss_pred CEEEEEEeecC
Confidence 99999999754
No 54
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=97.87 E-value=8.4e-06 Score=72.06 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=52.5
Q ss_pred ccCCeeeeccCCChhhhhhhhccc--CCeeEEE----eeccccccc----cccCceEEEEeecCCCCCEEEEEEcccc
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQE--DGIDDVR----ITRQGFEKR----VVSQDLQLWLSNAPPSGKKFTLLARAGR 224 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~--~gv~gl~----~~~~~~~~~----~vg~~~~v~i~~~d~~~~ki~Ls~r~~~ 224 (233)
+.|+|+++++ +|+|+++. +|++|+. ++|.+++++ .+||.+.|+|.++|+++++|+||.|...
T Consensus 17 v~G~V~~I~~------fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~ 88 (308)
T 1q8k_A 17 VMVNVRSIQE------MGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVS 88 (308)
T ss_dssp EEEEEEEEET------TEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCC
T ss_pred EEEEEEEEeC------cEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecc
Confidence 7799999985 47888888 7999995 777766555 5799999999999999999999998753
No 55
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.86 E-value=6.9e-06 Score=72.59 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=56.2
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcc----cc------cCcccccCCCCEEEEEEEEEeCC
Q 026794 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWD----LI------QDIRDILNEGDEVRVKVIKIDRE 119 (233)
Q Consensus 55 ~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~----~~------~~~~~~~~~Gd~V~vkVi~vd~e 119 (233)
.+++|++|.|+ ++++||+|.. ...|++|+|++++. +. .+.++.|++||.|.|+|++++.
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s-----~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~- 165 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNS-----RLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS- 165 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSS-----SSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECC-----CcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC-
Confidence 57999999998 8999999972 56899999999753 22 2456789999999999999995
Q ss_pred CCeEEEEEec
Q 026794 120 KSRITLSIKQ 129 (233)
Q Consensus 120 ~~ri~LS~k~ 129 (233)
.+++.||+|+
T Consensus 166 ~~~i~LStr~ 175 (308)
T 2nn6_H 166 DGAVSLHTRS 175 (308)
T ss_dssp TTEEEEECCS
T ss_pred CCCEEEEecC
Confidence 7889999885
No 56
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.84 E-value=1.5e-05 Score=59.24 Aligned_cols=66 Identities=8% Similarity=-0.048 Sum_probs=50.2
Q ss_pred cCCCCeeeecCCccccCCeeeeccCCChhhhhhhhcccC---CeeEEE----e-eccccccc----cccCceEEEEeecC
Q 026794 143 IPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQED---GIDDVR----I-TRQGFEKR----VVSQDLQLWLSNAP 210 (233)
Q Consensus 143 ~~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~~~---gv~gl~----~-~~~~~~~~----~vg~~~~v~i~~~d 210 (233)
++.|++ +.|+|+++++| |+|+++.+ |++|+. + ++.+++++ .+||.++|++.++|
T Consensus 10 ~~vG~i--------~~G~V~~v~~f------G~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd 75 (103)
T 2eqs_A 10 PTIGDI--------YNGKVTSIMQF------GCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFT 75 (103)
T ss_dssp CCTTCE--------EEEEEEEECSS------CEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEE
T ss_pred CCCCCE--------EEEEEEEEecc------EEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEE
Confidence 456776 67999998854 77888886 999995 4 33333333 58999999999998
Q ss_pred CCCCEEEEEEcccc
Q 026794 211 PSGKKFTLLARAGR 224 (233)
Q Consensus 211 ~~~~ki~Ls~r~~~ 224 (233)
. +||+||+|...
T Consensus 76 ~--~~i~LSlk~~~ 87 (103)
T 2eqs_A 76 G--TKTSLSMKDVD 87 (103)
T ss_dssp T--TEEEEESTTBC
T ss_pred C--CeeEEEEeecc
Confidence 7 59999998754
No 57
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.70 E-value=6.3e-05 Score=61.24 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=56.5
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCCCc-cEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEe
Q 026794 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLY-HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (233)
Q Consensus 55 ~~~~G~vv~g~-----~~G~fV~l~~~~~~~-gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k 128 (233)
.+++||+|.|+ .++++|+|. + ...|++|++++. ...++.+..|++||.|.|+|.+++. .+.+.||..
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~-----~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Ltc~ 76 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQ-----NFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEK-ELEAEIECF 76 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESS-----TTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEESS
T ss_pred cCCCcCEEEEEEEEEECcEEEEEEC-----CCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecC-CCceEEEec
Confidence 46899999998 789999997 4 589999999886 3356788889999999999999996 567888843
No 58
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.55 E-value=0.00032 Score=60.02 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=53.4
Q ss_pred CCCCCEEEEE-e--------eeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCC--CeEE
Q 026794 56 VNVEDIFVGR-D--------YGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREK--SRIT 124 (233)
Q Consensus 56 ~~~G~vv~g~-~--------~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~--~ri~ 124 (233)
-++|++++|+ . ..+||+|+..+ .+.+|++|.+|+. |.+.|++||.|+|.|++++.+. .+|.
T Consensus 5 ~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~--~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIi 76 (251)
T 2asb_A 5 TREGEIVAGVIQRDSRANARGLVVVRIGTET--KASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLIT 76 (251)
T ss_dssp CCTTCEEEEEEECCHHHHHTTCEEEEECSSS--SCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEE
T ss_pred hcCCCEEEEEEEEccccccCCeEEEEeCCCC--cceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEE
Confidence 3689999998 2 36999996100 1499999999985 5788999999999999999764 6899
Q ss_pred EEEec
Q 026794 125 LSIKQ 129 (233)
Q Consensus 125 LS~k~ 129 (233)
||...
T Consensus 77 LSRt~ 81 (251)
T 2asb_A 77 LSRTH 81 (251)
T ss_dssp EESSC
T ss_pred EEecc
Confidence 99865
No 59
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=97.54 E-value=3.7e-05 Score=78.74 Aligned_cols=64 Identities=3% Similarity=-0.187 Sum_probs=53.4
Q ss_pred CccccCCeeeeccCCChhhhhhhhcccCCeeEEE----eeccc-cccc----cccCceEEEEeecCCCCCEEEEEEccc
Q 026794 154 SSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQG-FEKR----VVSQDLQLWLSNAPPSGKKFTLLARAG 223 (233)
Q Consensus 154 ~~~~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~-~~~~----~vg~~~~v~i~~~d~~~~ki~Ls~r~~ 223 (233)
|..++|+|+++++ ||+|++++.|++|+. +++.+ +.++ .+||.|+|+|.++|.+++||+||+|..
T Consensus 903 G~iv~G~V~~V~~------fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 975 (1219)
T 3psi_A 903 GSIIPVRVERFWH------NDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 975 (1219)
T ss_dssp TCEEEEEEEEECS------SCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHH
T ss_pred CCEEEEEEEEEec------ceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHH
Confidence 3337899999985 578888899999995 77776 4544 589999999999999999999999854
No 60
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.52 E-value=1.3e-05 Score=78.12 Aligned_cols=65 Identities=11% Similarity=-0.028 Sum_probs=0.0
Q ss_pred CccccCCeeeeccCCChhhhhhhhcccCCeeEE----Eeeccccccc----cccCceEEEEeecCCCCCEEEEEEcccce
Q 026794 154 SSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDV----RITRQGFEKR----VVSQDLQLWLSNAPPSGKKFTLLARAGRC 225 (233)
Q Consensus 154 ~~~~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl----~~~~~~~~~~----~vg~~~~v~i~~~d~~~~ki~Ls~r~~~~ 225 (233)
|..+.|+|+++. +||+|+++.+|++|| ++++++++++ .+||.++|+|.++|. ++||+||+|+..+
T Consensus 638 G~v~~G~V~~I~------~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~~~ 710 (726)
T 4aid_A 638 GKIYDGKVVKVV------DFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVVDQ 710 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEEEEe------ccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeeccc
Confidence 333789998887 568889889999998 4788777665 589999999999998 7999999997643
No 61
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=97.51 E-value=2.8e-05 Score=67.40 Aligned_cols=62 Identities=2% Similarity=-0.054 Sum_probs=51.4
Q ss_pred ccCCeeeeccCCChhhhhhhhccc--CCeeEEE----eeccccccc----cccCceEEEEeecCCCCCEEEEEEcccc
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQE--DGIDDVR----ITRQGFEKR----VVSQDLQLWLSNAPPSGKKFTLLARAGR 224 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~--~gv~gl~----~~~~~~~~~----~vg~~~~v~i~~~d~~~~ki~Ls~r~~~ 224 (233)
+.|+|.++.+ +|+|+++. +|++|+. ++++++.++ .+||.+.|+|.++|.++++++||.|...
T Consensus 15 v~G~V~~I~~------~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~~ 86 (266)
T 3cw2_C 15 LIATVKQVFD------YGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVT 86 (266)
T ss_dssp EEEEEEECCS------SSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTSC
T ss_pred EEEEEEEEec------cEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEecc
Confidence 7799999885 47888887 8999994 666665544 5799999999999999999999998754
No 62
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.40 E-value=0.00017 Score=53.32 Aligned_cols=77 Identities=18% Similarity=0.082 Sum_probs=48.9
Q ss_pred CCCCCEEEEE--------eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEE
Q 026794 56 VNVEDIFVGR--------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (233)
Q Consensus 56 ~~~G~vv~g~--------~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~ 127 (233)
.+.++.++|+ .|| |+.-++ .+.+.|+|+|++++..+
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~~----gg~dvfvH~s~l~~~~~------------------------------- 54 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPDD----GSKDVFVHFSAGSSGAA------------------------------- 54 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEESS----SSCEEEEECCCSCSSSC-------------------------------
T ss_pred ccccccceeEEEEEECCCCCE-EEEeCC----CCcEEEEEEEEEecCCc-------------------------------
Confidence 3456677887 588 887652 26899999999987642
Q ss_pred eccccChhhHHhhhhcCCCCeeeecCCccccCCeeeeccCCChhhhhhhhcccCCeeEEE----eecccc
Q 026794 128 KQLEEDPLLETLEKVIPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQGF 193 (233)
Q Consensus 128 k~~~~dp~~~~~~~~~~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~~ 193 (233)
..+.++.|+. +++.+..++ ++|+|+++++|++||. ++|.++
T Consensus 55 -----------~~~~l~~Ge~--------V~g~V~~i~------~fG~fv~l~~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 55 -----------VRGNPQQGDR--------VEGKIKSIT------DFGIFIGLDGGIDGLVHLSDISWAQA 99 (101)
T ss_dssp -----------CCCCCCTTCE--------EEEEEEECC------SEEEEECTTSCEEEEEEEEEEEECCC
T ss_pred -----------cccCCCCCCE--------EEEEEEEeC------CcEEEEEcCCCceEEEEHHHCccCcC
Confidence 0112344555 556776665 4577888888999994 565543
No 63
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=97.40 E-value=2.3e-05 Score=79.08 Aligned_cols=65 Identities=3% Similarity=-0.184 Sum_probs=0.0
Q ss_pred CccccCCeeeeccCCChhhhhhhhcccCCeeEEE----eeccc-cccc----cccCceEEEEeecCCCCCEEEEEEcccc
Q 026794 154 SSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQG-FEKR----VVSQDLQLWLSNAPPSGKKFTLLARAGR 224 (233)
Q Consensus 154 ~~~~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~-~~~~----~vg~~~~v~i~~~d~~~~ki~Ls~r~~~ 224 (233)
|..+.|+|++++ +||+|++++.|++|+. +++.+ +.++ .+||.|+|+|.++|.+++||+||+|...
T Consensus 906 G~iv~G~V~~V~------~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~d 979 (1030)
T 3psf_A 906 GSIIPVRVERFW------HNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHD 979 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEEEEEEEc------cCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEechHH
Confidence 444889998887 5688888899999983 77766 4444 5899999999999999999999998643
No 64
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=97.35 E-value=7e-05 Score=73.70 Aligned_cols=65 Identities=5% Similarity=-0.053 Sum_probs=53.9
Q ss_pred CccccCCeeeeccCCChhhhhhhhcccCCeeEEE----eeccccccc----cccCceEEEEeecCCCCCEEEEEEcccc
Q 026794 154 SSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQGFEKR----VVSQDLQLWLSNAPPSGKKFTLLARAGR 224 (233)
Q Consensus 154 ~~~~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~~~~~----~vg~~~~v~i~~~d~~~~ki~Ls~r~~~ 224 (233)
|..+.|+|+++++ ||+|+++..|++|+. +++.++.++ .+||.|+|+|.++|.++++|+||+|...
T Consensus 655 G~iv~G~V~~V~~------fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 655 GMVLEGVVTNVTN------FGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp TCBCCCEEEEEET------TEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred CCEEEEEEEEEec------CCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 4458899999985 578888899999995 666666554 5899999999999999999999998643
No 65
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=96.72 E-value=0.0012 Score=53.69 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=44.5
Q ss_pred ccCCeeeeccCCChhhhhhhhcccCCeeEEE----eeccccc-----------cc----cccCceEEEEeecCCCCC---
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQGFE-----------KR----VVSQDLQLWLSNAPPSGK--- 214 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~~~-----------~~----~vg~~~~v~i~~~d~~~~--- 214 (233)
++|+|+++.++ |+|+++.+ ++|+. ++++++. ++ .+||.+.|++.++|.+++
T Consensus 85 ~~G~V~~v~~~------G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p~ 157 (187)
T 1go3_E 85 IEGEVVDVVEF------GSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKR 157 (187)
T ss_dssp EEEEEEEEETT------EEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC----
T ss_pred EEEEEEEEeCc------EEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCCC
Confidence 67999999855 67777765 99994 3333332 22 579999999999998765
Q ss_pred --EEEEEEccc
Q 026794 215 --KFTLLARAG 223 (233)
Q Consensus 215 --ki~Ls~r~~ 223 (233)
++.||++..
T Consensus 158 ~~~I~lS~k~~ 168 (187)
T 1go3_E 158 GSKIALTMRQP 168 (187)
T ss_dssp -CEEEEECCST
T ss_pred ccEEEEEEcCC
Confidence 999999863
No 66
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=96.43 E-value=0.0001 Score=65.96 Aligned_cols=109 Identities=9% Similarity=0.065 Sum_probs=69.5
Q ss_pred cccCCCCEEEEEEEEEeCCCCeEEEEEeccccChhhHH-----hhhh-cCCCCeeeecCCccccCCeeeeccCCChhhhh
Q 026794 101 DILNEGDEVRVKVIKIDREKSRITLSIKQLEEDPLLET-----LEKV-IPQDGSVISDSSSMSSSNSNTIEPLPGLGAIF 174 (233)
Q Consensus 101 ~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~~~dp~~~~-----~~~~-~~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~ 174 (233)
..+.+||.+.+.|...|.. +....+.|+....-+.+. .+.+ ...|++ ++|+|.++.+. +
T Consensus 85 ~~~~vGd~ie~~I~~~dfg-R~aa~~aKqvi~qkireaere~i~~e~~~~~GeI--------V~G~V~ri~~~------~ 149 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKNFG-RIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTV--------TTAEVIRVMGE------W 149 (344)
T ss_dssp TTCCTTCEEEEECCCCCSS-SCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCE--------EEEEEEEECSS------E
T ss_pred ccccCCCEEEEEEccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCE--------EEEEEEEEecC------c
Confidence 4478999999999888753 333334455433233222 1111 113444 88999998753 5
Q ss_pred hhhcccCCeeEEEeeccccc--cccccCceEEEEeecCCCCC--EEEEEEcccce
Q 026794 175 EELLQEDGIDDVRITRQGFE--KRVVSQDLQLWLSNAPPSGK--KFTLLARAGRC 225 (233)
Q Consensus 175 ~~l~~~~gv~gl~~~~~~~~--~~~vg~~~~v~i~~~d~~~~--ki~Ls~r~~~~ 225 (233)
+++++. +++|+.+...... .-.+||.+++++.+++.+++ ++.||-+....
T Consensus 150 v~VDlG-k~EgiLp~sE~ip~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p~~ 203 (344)
T 1hh2_P 150 ADIRIG-KLETRLPKKEWIPGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRVPEF 203 (344)
T ss_dssp EEEEET-TEEEEEEGGGSCTTCCCCTTCEEEEEEEEEEEETTEEEEEEESSSHHH
T ss_pred EEEEeC-CeEEEEeHHHcCCCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeeccHH
Confidence 677776 8999964443321 11679999999999987654 68888765443
No 67
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=96.40 E-value=0.0024 Score=53.25 Aligned_cols=68 Identities=4% Similarity=0.017 Sum_probs=49.5
Q ss_pred cCCCCeeeecCCccccCCeeeeccCCChhhhhhhhcc--------cCCeeEEE----eeccccc--cc----cccCceEE
Q 026794 143 IPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQ--------EDGIDDVR----ITRQGFE--KR----VVSQDLQL 204 (233)
Q Consensus 143 ~~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~--------~~gv~gl~----~~~~~~~--~~----~vg~~~~v 204 (233)
.++|++ +.|+|+.+.++ ++|+++ ..+++|+. +++.+.+ +. .+||.+.+
T Consensus 79 p~vGDv--------V~G~V~~v~~~------~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~a 144 (209)
T 2nn6_I 79 PDVGAI--------VTCKVSSINSR------FAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLA 144 (209)
T ss_dssp CCTTCE--------EEEEEEEECSS------EEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEE
T ss_pred CCCCCE--------EEEEEEEEECc------eEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEE
Confidence 466777 77999999865 555553 35777773 4444443 22 57999999
Q ss_pred EEeecCCCCCEEEEEEcccc
Q 026794 205 WLSNAPPSGKKFTLLARAGR 224 (233)
Q Consensus 205 ~i~~~d~~~~ki~Ls~r~~~ 224 (233)
+|.+++.++++|+||.|+.+
T Consensus 145 kVisi~~~~~~i~LS~k~~~ 164 (209)
T 2nn6_I 145 KVISLGDAQSNYLLTTAENE 164 (209)
T ss_dssp EEEEEETTTTEEEEECCSSS
T ss_pred EEEEEeCCCCeEEEEEecCC
Confidence 99999887789999998754
No 68
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=96.21 E-value=0.0036 Score=50.59 Aligned_cols=59 Identities=10% Similarity=0.074 Sum_probs=42.0
Q ss_pred ccCCeeeeccCCChhhhhhhhcccCCeeEEE----eeccccc-----------cc----cccCceEEEEeecCCC----C
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQGFE-----------KR----VVSQDLQLWLSNAPPS----G 213 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~~~-----------~~----~vg~~~~v~i~~~d~~----~ 213 (233)
++|+|++++++ |+|+++. +++|+. +++++.. +. .+||.++|+|.+++.+ .
T Consensus 85 ~~G~V~~v~~~------G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~~ 157 (180)
T 4ayb_E 85 VEGEVLQVDNY------GVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRL 157 (180)
T ss_dssp EEEEEEEEETT------EEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC------
T ss_pred EEEEEeeeccc------eEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCccc
Confidence 67999999855 6677765 589984 4444331 11 5799999999999864 4
Q ss_pred CEEEEEEcc
Q 026794 214 KKFTLLARA 222 (233)
Q Consensus 214 ~ki~Ls~r~ 222 (233)
.||+||+|.
T Consensus 158 ~rI~ls~k~ 166 (180)
T 4ayb_E 158 PRIALTMRQ 166 (180)
T ss_dssp -CEEEECCS
T ss_pred CcEEEEcCC
Confidence 589999985
No 69
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.11 E-value=0.0052 Score=53.67 Aligned_cols=68 Identities=7% Similarity=-0.038 Sum_probs=55.6
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEec
Q 026794 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129 (233)
Q Consensus 55 ~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~ 129 (233)
.+++||+|-|+ ...+.|+|. ....|++|.+++. ...+..+..|++||.|.|+|++++. .+.+.||...
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~-----s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc~~ 196 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVG-----GSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVCID 196 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECS-----SSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEECSB
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEEC-----CCceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEecc
Confidence 46999999999 566899997 3578999999876 3346788899999999999999985 5568888744
No 70
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=95.66 E-value=0.021 Score=53.08 Aligned_cols=60 Identities=13% Similarity=0.279 Sum_probs=48.2
Q ss_pred CCCCCEEEEEeeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEE
Q 026794 56 VNVEDIFVGRDYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (233)
Q Consensus 56 ~~~G~vv~g~~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~ 127 (233)
-..|+.++| +||++. +.+|++|++++..+ ......|++||.|+|+|.++|..+++|.+..
T Consensus 401 ~~~g~~f~g----~vv~l~------~~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 401 AQPERVWDA----VVVDRR------GAQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp TCTTCCEEE----EEEEEE------TTEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred hCCCCEEEE----EEEEEe------CcEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 367888764 678886 45899999999875 2234569999999999999999999998865
No 71
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=95.51 E-value=0.0046 Score=50.16 Aligned_cols=57 Identities=4% Similarity=-0.091 Sum_probs=42.8
Q ss_pred ccCCeeeeccCCChhhhhhhhcccC----------CeeEEE----eeccccccc----cccCceEEEEeecCCCCCEEEE
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQED----------GIDDVR----ITRQGFEKR----VVSQDLQLWLSNAPPSGKKFTL 218 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~----------gv~gl~----~~~~~~~~~----~vg~~~~v~i~~~d~~~~ki~L 218 (233)
+.|+|+++.++ ++|+++.+ +++|+. +++.++++. .+||.+.++|.+ ++|+|
T Consensus 61 V~G~V~~V~~~------ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~L 129 (179)
T 3m7n_A 61 VLGRVVDLRNS------IALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLRL 129 (179)
T ss_dssp EEEEEEEECSS------EEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTEE
T ss_pred EEEEEEEEeCC------cEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEEE
Confidence 67999998854 67777776 899984 444444333 579999999976 78999
Q ss_pred EEcccc
Q 026794 219 LARAGR 224 (233)
Q Consensus 219 s~r~~~ 224 (233)
|.|+.+
T Consensus 130 S~k~~~ 135 (179)
T 3m7n_A 130 STKEEE 135 (179)
T ss_dssp ECCSTT
T ss_pred EEecCC
Confidence 998743
No 72
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=93.65 E-value=0.037 Score=46.20 Aligned_cols=57 Identities=2% Similarity=-0.084 Sum_probs=40.5
Q ss_pred ccCCeeeeccCCChhhhhhhhcccCCeeEEE----eeccc----ccc--------c--cccCceEEEEeecCCCCC---E
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQG----FEK--------R--VVSQDLQLWLSNAPPSGK---K 215 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~----~~~--------~--~vg~~~~v~i~~~d~~~~---k 215 (233)
++|+|+++++ ||+|+++.+ ++||. ++... .+. . .+||.++|+|.++|.+.+ +
T Consensus 87 ~~G~V~~vt~------fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~~ 159 (215)
T 2b8k_G 87 VDGTVVSCSQ------HGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 159 (215)
T ss_dssp EEEEEEEEET------TEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEec------ceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccEE
Confidence 7799999985 477788887 99994 33211 111 1 469999999999998875 4
Q ss_pred EEEEEc
Q 026794 216 FTLLAR 221 (233)
Q Consensus 216 i~Ls~r 221 (233)
+. |++
T Consensus 160 Ig-Smk 164 (215)
T 2b8k_G 160 IG-SIK 164 (215)
T ss_dssp EE-ECC
T ss_pred EE-EcC
Confidence 54 554
No 73
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=92.98 E-value=0.091 Score=44.23 Aligned_cols=60 Identities=7% Similarity=-0.094 Sum_probs=43.9
Q ss_pred ccCCeeeeccCCChhhhhhhhcccCCeeEEE----eecccccc-------c-cccCceEEEEeecCCCCCEEEEEEccc
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQGFEK-------R-VVSQDLQLWLSNAPPSGKKFTLLARAG 223 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~~~~-------~-~vg~~~~v~i~~~d~~~~ki~Ls~r~~ 223 (233)
+.|+|+.+.+ .++++++..+.+|+. ++..+.+. - .+||.+.++|.+++.+ +++.||.|+.
T Consensus 70 V~G~V~~v~~------~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~-~~i~LS~k~~ 141 (235)
T 2z0s_A 70 VIGLIQSVGI------MNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKT-RSPLLTVQGE 141 (235)
T ss_dssp EEEEEEEECS------SEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTT-SCEEEECCSS
T ss_pred EEEEEEEEeC------CeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCC-CcEEEEEecc
Confidence 7799998875 477888888899984 22211111 1 5799999999999854 5799999854
No 74
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=92.55 E-value=0.087 Score=42.04 Aligned_cols=54 Identities=2% Similarity=-0.059 Sum_probs=38.4
Q ss_pred ccCCeeeeccCCChhhhhhhhcccCCeeEEE----eecc-c---ccc--------c--cccCceEEEEeecCCCCCEEE
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQ-G---FEK--------R--VVSQDLQLWLSNAPPSGKKFT 217 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~-~---~~~--------~--~vg~~~~v~i~~~d~~~~ki~ 217 (233)
++|+|+++++ ||+|+++.+ ++||. ++.. + .++ . .+||.++|++.++|.+.+.+.
T Consensus 87 ~~G~V~~v~~------fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~ 158 (171)
T 1y14_B 87 VDGTVVSCSQ------HGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIH 158 (171)
T ss_dssp EEEEEEEEET------TEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEEE
T ss_pred EEEEEEEEec------CEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCCCcE
Confidence 6799999985 577888888 99994 3221 1 111 1 469999999999998876443
No 75
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=92.18 E-value=0.084 Score=42.10 Aligned_cols=51 Identities=4% Similarity=-0.075 Sum_probs=36.0
Q ss_pred ccCCeeeeccCCChhhhhhhhcccCCeeEEE----eecc----cccc---------c---cccCceEEEEeecCCCCC
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQ----GFEK---------R---VVSQDLQLWLSNAPPSGK 214 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~----~~~~---------~---~vg~~~~v~i~~~d~~~~ 214 (233)
++|+|++++++ |+|+++. .++|+. ++.. ..++ . .+||.++|++.++|.+.+
T Consensus 85 ~~G~V~~v~~f------G~fV~l~-~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (172)
T 2c35_B 85 VDAVVTQVNKV------GLFTEIG-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKN 155 (172)
T ss_dssp EEEEEEEEETT------EEEEEET-TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETT
T ss_pred EEEEEEEEeCC------EEEEEEC-CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCC
Confidence 67999999855 7777775 577884 2211 1221 1 479999999999998876
No 76
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=92.11 E-value=0.1 Score=41.76 Aligned_cols=53 Identities=4% Similarity=-0.029 Sum_probs=36.7
Q ss_pred ccCCeeeeccCCChhhhhhhhcccCCeeEEE----eeccc----------ccc---c-cccCceEEEEeecCCCCCEE
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQG----------FEK---R-VVSQDLQLWLSNAPPSGKKF 216 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~----------~~~---~-~vg~~~~v~i~~~d~~~~ki 216 (233)
++|+|++++++ |+|+++. .++|+. +++.. +++ . .+||.++|++.+++.+.+++
T Consensus 88 ~~G~V~~v~~f------G~FV~l~-~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~ 158 (172)
T 3h0g_G 88 VDAIVTTVNKM------GFFANIG-PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEI 158 (172)
T ss_dssp EECCCCEEETT------EEECCBT-TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCE
T ss_pred EEEEEEEEEcc------eEEEEeC-CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCc
Confidence 67999998855 6667665 477874 33221 111 1 57999999999999988544
No 77
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=91.71 E-value=0.13 Score=43.77 Aligned_cols=66 Identities=8% Similarity=-0.119 Sum_probs=48.6
Q ss_pred cCCCCeeeecCCccccCCeeeeccCCChhhhhhhhcccCCeeEEE----eeccccc---cc----cccCceEEEEeecCC
Q 026794 143 IPQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQGFE---KR----VVSQDLQLWLSNAPP 211 (233)
Q Consensus 143 ~~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~~~---~~----~vg~~~~v~i~~~d~ 211 (233)
.+.|++ +.|+|+.+.+ +++|+++..+.+|+. +...+.+ +. .+||.+.++|.+++.
T Consensus 72 p~~GDi--------V~G~V~~v~~------~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~ 137 (251)
T 2je6_I 72 PKINDI--------VIGLVEDVEI------YGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR 137 (251)
T ss_dssp CCTTCE--------EEEEEEEECS------SEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET
T ss_pred CCCCCE--------EEEEEEEEeC------ceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC
Confidence 356777 6799999875 478888888899984 2322221 11 579999999999985
Q ss_pred CCCEEEEEEccc
Q 026794 212 SGKKFTLLARAG 223 (233)
Q Consensus 212 ~~~ki~Ls~r~~ 223 (233)
+ +++.||.|..
T Consensus 138 ~-~~i~LS~r~~ 148 (251)
T 2je6_I 138 S-IDPVLSVKGK 148 (251)
T ss_dssp T-EEEEEECCST
T ss_pred C-CcEEEEEccc
Confidence 4 6899999864
No 78
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=91.57 E-value=0.15 Score=49.16 Aligned_cols=59 Identities=5% Similarity=-0.033 Sum_probs=43.2
Q ss_pred cccCCeeeeccCCChhhhhhhhcc-cCCeeEEE----eec--cc--c---------c--c-ccccCceEEEEeecCCCCC
Q 026794 156 MSSSNSNTIEPLPGLGAIFEELLQ-EDGIDDVR----ITR--QG--F---------E--K-RVVSQDLQLWLSNAPPSGK 214 (233)
Q Consensus 156 ~~~g~v~~v~~~~g~~~~~~~l~~-~~gv~gl~----~~~--~~--~---------~--~-~~vg~~~~v~i~~~d~~~~ 214 (233)
..+|.|+.++++ |.|+++ +.|++|+. ++. +. . . . -.+||.|+|+|.++|++.+
T Consensus 563 ~f~g~V~~V~~~------G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~~ 636 (644)
T 2id0_A 563 RFAAEIVDISRG------GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR 636 (644)
T ss_dssp CEEEEEEEEETT------EEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTT
T ss_pred eEEEEEEEEeCC------ceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCCC
Confidence 367899888854 667777 57899995 221 11 1 1 1 1579999999999999999
Q ss_pred EEEEEE
Q 026794 215 KFTLLA 220 (233)
Q Consensus 215 ki~Ls~ 220 (233)
+|.++.
T Consensus 637 ~I~~~l 642 (644)
T 2id0_A 637 SIIARP 642 (644)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999875
No 79
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=91.16 E-value=0.4 Score=34.51 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=45.5
Q ss_pred ccCCCCCCEEEEE----eeeEEEEEccCCCCccEEEEEEcc-ccCcccccCcccccCCCCEEEEEEEEEeC
Q 026794 53 SSRVNVEDIFVGR----DYGAFIHLRFPDGLYHLTGLVHVS-EVSWDLIQDIRDILNEGDEVRVKVIKIDR 118 (233)
Q Consensus 53 ~~~~~~G~vv~g~----~~G~fV~l~~~~~~~gv~Glv~~s-els~~~~~~~~~~~~~Gd~V~vkVi~vd~ 118 (233)
.-.+-+|++.+|. ++-++|.|.+++ |.+|++--. .+..++..++++.+ +|.+|+++|+.+|.
T Consensus 27 ~~~~~~g~VtkGiVy~kd~~fyV~L~dY~---glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 27 AMDLSPGSVHEGIVYFKDGIFKVRLLGYE---GHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADG 93 (102)
T ss_dssp CCCCCSSCEEEEEEEEETTEEEEECTTTS---SCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECS
T ss_pred ccccCCCceEeeEEEEeCCEEEEEecCCC---CceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEecc
Confidence 4568899999999 666789998643 788887322 22334555566655 79999999999985
No 80
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=87.95 E-value=0.66 Score=38.80 Aligned_cols=65 Identities=9% Similarity=-0.080 Sum_probs=47.0
Q ss_pred CCCCeeeecCCccccCCeeeeccCCChhhhhhhhcccCCeeEEE----eecc-cccc--c--cccCceEEEEeecCCCCC
Q 026794 144 PQDGSVISDSSSMSSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQ-GFEK--R--VVSQDLQLWLSNAPPSGK 214 (233)
Q Consensus 144 ~~g~~~~~~~~~~~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~-~~~~--~--~vg~~~~v~i~~~d~~~~ 214 (233)
+.|++ +.|+|+.+.++ ++++++....+|+. +++. ...+ + .+||.+.++|.+++.+ +
T Consensus 56 ~~GDi--------V~G~V~~v~~~------~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~-~ 120 (229)
T 2ba0_A 56 SVGDV--------VIGIIREVAAN------GWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPK-M 120 (229)
T ss_dssp CTTCE--------EEEEEEEECSS------EEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTT-C
T ss_pred CCCCE--------EEEEEEEEeCC------eEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCC-C
Confidence 56776 67999988754 77888888888884 2211 0100 1 5799999999999864 6
Q ss_pred EEEEEEccc
Q 026794 215 KFTLLARAG 223 (233)
Q Consensus 215 ki~Ls~r~~ 223 (233)
++.||.|..
T Consensus 121 ~i~LS~r~~ 129 (229)
T 2ba0_A 121 KVTLTMKDR 129 (229)
T ss_dssp CEEEECCSS
T ss_pred cEEEEEccc
Confidence 899999864
No 81
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=87.84 E-value=0.25 Score=48.40 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=36.6
Q ss_pred ccCCeeeeccCCChhhhhhhhcccC-CeeEEE----ee--ccc---------c--cc------c--cccCceEEEEeecC
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQED-GIDDVR----IT--RQG---------F--EK------R--VVSQDLQLWLSNAP 210 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~-gv~gl~----~~--~~~---------~--~~------~--~vg~~~~v~i~~~d 210 (233)
.+|.|+.+.+ +|.|+++.+ |++|+. ++ .+. + +. . .+||.|+|+|.++|
T Consensus 673 ~~g~V~~V~~------~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd 746 (760)
T 2vnu_D 673 ETGYVIKVFN------NGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVM 746 (760)
T ss_dssp EEEEEEEEET------TEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC---
T ss_pred EEEEEEEEEC------CeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEE
Confidence 5688888774 466777788 999995 32 211 0 11 1 57999999999999
Q ss_pred CC---CCEEEEEEc
Q 026794 211 PS---GKKFTLLAR 221 (233)
Q Consensus 211 ~~---~~ki~Ls~r 221 (233)
.+ ++||.|+.|
T Consensus 747 ~~~~~~~kI~lslk 760 (760)
T 2vnu_D 747 DPITSKRKAELLLK 760 (760)
T ss_dssp -----CCEEEC---
T ss_pred CccccCCcEEEEeC
Confidence 88 689999875
No 82
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=85.60 E-value=0.39 Score=48.37 Aligned_cols=59 Identities=14% Similarity=0.136 Sum_probs=42.1
Q ss_pred ccCCeeeeccCCChhhhhhhhcccC-CeeEEE----ee--ccc---------c--cc------c--cccCceEEEEeecC
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQED-GIDDVR----IT--RQG---------F--EK------R--VVSQDLQLWLSNAP 210 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~-gv~gl~----~~--~~~---------~--~~------~--~vg~~~~v~i~~~d 210 (233)
.+|.|+.+.++ |.|+++.+ |++|+. ++ .+. + +. . .+||.|+|+|.+++
T Consensus 890 ~~g~V~~V~~~------G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd 963 (977)
T 2wp8_J 890 ETGYVIKVFNN------GIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVM 963 (977)
T ss_dssp EEEEEEEECSS------EEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCC
T ss_pred EEEEEEEEcCC------eEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEc
Confidence 56888888754 66677788 999995 32 111 0 11 2 57999999999988
Q ss_pred CC---CCEEEEEEc
Q 026794 211 PS---GKKFTLLAR 221 (233)
Q Consensus 211 ~~---~~ki~Ls~r 221 (233)
.+ ++||+|++|
T Consensus 964 ~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 964 DPITSKRKAELLLK 977 (977)
T ss_dssp CSSSCCCCCCEEEC
T ss_pred CcccCCCceEEEeC
Confidence 74 478999875
No 83
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=82.11 E-value=6.6 Score=32.22 Aligned_cols=66 Identities=11% Similarity=0.059 Sum_probs=43.2
Q ss_pred hhccCCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCcc------------cccCCCCEEEEEE
Q 026794 51 KYSSRVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIR------------DILNEGDEVRVKV 113 (233)
Q Consensus 51 ~~~~~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~------------~~~~~Gd~V~vkV 113 (233)
.+.-++..|++++|+ +.|+.+-+.| -...+||...|..++.-++. +--++|+.|+.+|
T Consensus 122 ~iVFrPf~GevL~G~V~~~s~~~Ig~~~~G-----~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV 196 (214)
T 2rf4_A 122 LYVWQPQVGDVLEGYIFIQSASHIGLLIHD-----AFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTV 196 (214)
T ss_dssp EEEECCCTTCEEEEEECCCCSSCEEEEETT-----TEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEE
T ss_pred EEEEecCCCCEEEEEEEEECCCcEEEEEeC-----CEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEE
Confidence 345578999999999 5455443332 46789999988533211111 1123699999999
Q ss_pred EEEeCCCC
Q 026794 114 IKIDREKS 121 (233)
Q Consensus 114 i~vd~e~~ 121 (233)
.+++...+
T Consensus 197 ~~~~~~~~ 204 (214)
T 2rf4_A 197 RNVHTTGR 204 (214)
T ss_dssp EEEECCSS
T ss_pred EEEEecCC
Confidence 99986443
No 84
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=72.73 E-value=3 Score=37.27 Aligned_cols=63 Identities=6% Similarity=-0.040 Sum_probs=42.6
Q ss_pred ccccCCeee----eccCCChhhhhhhhcccC---CeeEEEeeccccccc--cccCceEEEEeecCCCC--CEEEEEEccc
Q 026794 155 SMSSSNSNT----IEPLPGLGAIFEELLQED---GIDDVRITRQGFEKR--VVSQDLQLWLSNAPPSG--KKFTLLARAG 223 (233)
Q Consensus 155 ~~~~g~v~~----v~~~~g~~~~~~~l~~~~---gv~gl~~~~~~~~~~--~vg~~~~v~i~~~d~~~--~ki~Ls~r~~ 223 (233)
.+++|.|.+ +.+ .++++++.. +++|+.+....+... .+||.+++++.+++.+. .++.||-..-
T Consensus 132 eIVtG~V~r~~~~v~~------~~v~VdLG~~~~k~EgiLP~~EqiP~E~~~~GDrVkvyV~~V~~~~kgpqI~LSRT~p 205 (366)
T 1k0r_A 132 EIVAGVIQRDSRANAR------GLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITLSRTHP 205 (366)
T ss_dssp CEEEEEEECCHHHHHT------TCEEEEECCSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEEEECCSSSCEEEEESSCH
T ss_pred CEEEEEEEEccccccC------CeEEEEeCCCccceEEEEcHHHcCCCccCCCCCEEEEEEEEEecCCCccEEEEEeCCh
Confidence 337899888 653 356677765 599996544433111 57999999999998773 4577775443
No 85
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=68.70 E-value=12 Score=26.81 Aligned_cols=53 Identities=15% Similarity=-0.017 Sum_probs=39.2
Q ss_pred CCCCCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccc-----cC-cccccCCCCEEEEE
Q 026794 55 RVNVEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLI-----QD-IRDILNEGDEVRVK 112 (233)
Q Consensus 55 ~~~~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~-----~~-~~~~~~~Gd~V~vk 112 (233)
....|+.+.|. +.++-|.+.+ |-.+.|+.+.+.|.+- .. +++.+++||.|.|+
T Consensus 30 ~~~~~~~~~AvV~~v~~~~~~v~~~~-----g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 30 IGNSDDILAAVVLSATPGAVEAFRKN-----GETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp SCTTTTCEEEEEEEEETTEEEEEETT-----SCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred cCccCCeEEEEEEEeCCCeEEEEEcC-----CCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 34456666665 6678888862 5677799999999752 34 67779999999998
No 86
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=65.96 E-value=23 Score=24.13 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=25.1
Q ss_pred cEEEEEEccccCcccccCcccccCCCCEEEEEEEEE
Q 026794 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (233)
Q Consensus 81 gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~v 116 (233)
+-+-|+|+|.+....-..--..++.||.|...+..-
T Consensus 31 g~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~ 66 (79)
T 1h95_A 31 KEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 66 (79)
T ss_dssp TEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEEC
T ss_pred CccEEEEhHHccccccccccccCCCCCEEEEEEEEC
Confidence 589999999997541111123477899999888653
No 87
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=65.92 E-value=6 Score=33.54 Aligned_cols=66 Identities=6% Similarity=-0.052 Sum_probs=43.5
Q ss_pred ccccCCeee----eccCCChhhhhhhhcccC---CeeEEEeeccccccc--cccCceEEEEeecCCCC--CEEEEEEccc
Q 026794 155 SMSSSNSNT----IEPLPGLGAIFEELLQED---GIDDVRITRQGFEKR--VVSQDLQLWLSNAPPSG--KKFTLLARAG 223 (233)
Q Consensus 155 ~~~~g~v~~----v~~~~g~~~~~~~l~~~~---gv~gl~~~~~~~~~~--~vg~~~~v~i~~~d~~~--~ki~Ls~r~~ 223 (233)
..++|.|.+ +.+- ..++++.. +++|+.+.+..+... .+||.+++++.+++.+. .++.||-..-
T Consensus 9 eIVtG~V~r~~~~v~~~------~ViVdlG~~~~k~EgiLP~~Eqip~E~~~~GDrIkayV~~V~~~~~gpqIiLSRt~p 82 (251)
T 2asb_A 9 EIVAGVIQRDSRANARG------LVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLITLSRTHP 82 (251)
T ss_dssp CEEEEEEECCHHHHHTT------CEEEEECSSSSCEEEEECGGGSCTTCCCCTTCEEEEEEEEEECCSSSCEEEEESSCH
T ss_pred CEEEEEEEEccccccCC------eEEEEeCCCCcceEEEEcHHHcCCCccCCCCCEEEEEEEEEEcCCCCCEEEEEeccH
Confidence 337788887 4431 34555554 589996555433211 57999999999998764 6888887654
Q ss_pred cee
Q 026794 224 RCK 226 (233)
Q Consensus 224 ~~v 226 (233)
..+
T Consensus 83 ~lv 85 (251)
T 2asb_A 83 NLV 85 (251)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 88
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=61.80 E-value=7.3 Score=36.43 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=40.2
Q ss_pred ccCCeeeeccCCChhhhhhhhcccCCeeEEE----eecccc------------ccc-cccCceEEEEeecCCCCCEEEEE
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVR----ITRQGF------------EKR-VVSQDLQLWLSNAPPSGKKFTLL 219 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~----~~~~~~------------~~~-~vg~~~~v~i~~~d~~~~ki~Ls 219 (233)
..|+|+++.|+ ++ ++|+++.+|-+|+. +++.++ ++. ..||++.|.|...+...+.-.|+
T Consensus 49 Y~GkV~rv~p~--~~--aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~lT 124 (517)
T 2bx2_L 49 YKGKITRIEPS--LE--AAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALT 124 (517)
T ss_dssp EEEEEEEEETT--TT--EEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCCEEE
T ss_pred EEEEEEEeccC--Cc--eEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCceEE
Confidence 66999999853 33 67888899999994 333332 111 46999999999977654443333
No 89
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=60.95 E-value=4.6 Score=33.37 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=34.3
Q ss_pred ccCCeeeeccCCChhhhhhhhcccCCeeEEEeecccc------------------cc-c---cccCceEEEEeecCCCCC
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVRITRQGF------------------EK-R---VVSQDLQLWLSNAPPSGK 214 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~~~~~~~------------------~~-~---~vg~~~~v~i~~~d~~~~ 214 (233)
++|.|..++++ |.|++++..++|+.....-. +. . .+||.++|+|.+++..+.
T Consensus 85 ~~G~Is~Vt~f------GifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~ 158 (218)
T 2ckz_B 85 VTGWISKCTAE------GIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDV 158 (218)
T ss_dssp EEEEEEEEETT------EEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCC
T ss_pred EEEEEEEEccC------cEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccC
Confidence 67899888865 55666665678874211110 11 1 479999999999987765
No 90
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=56.04 E-value=7.3 Score=31.61 Aligned_cols=50 Identities=8% Similarity=0.043 Sum_probs=32.5
Q ss_pred ccCCeeeeccCCChhhhhhhhcccCCeeEEEeecc----cc-------------------cc-c---cccCceEEEEeec
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDVRITRQ----GF-------------------EK-R---VVSQDLQLWLSNA 209 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl~~~~~----~~-------------------~~-~---~vg~~~~v~i~~~ 209 (233)
++|+|..++++ |.|+++ +.++|+.+... .. +. . .+||.++|+|.++
T Consensus 85 ~~G~Vs~vt~~------GifV~l-g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 157 (203)
T 3ayh_B 85 MLGKIKSCSEE------GIRVTI-SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESE 157 (203)
T ss_dssp EEEEEEEEETT------EEEEEC-SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEE
T ss_pred EEEEEEEEecc------EEEEEE-eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEE
Confidence 67999998865 555666 36777732111 10 11 1 4799999999998
Q ss_pred CCCC
Q 026794 210 PPSG 213 (233)
Q Consensus 210 d~~~ 213 (233)
+..+
T Consensus 158 ~~~~ 161 (203)
T 3ayh_B 158 DFVD 161 (203)
T ss_dssp EECC
T ss_pred Eccc
Confidence 8644
No 91
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=53.86 E-value=11 Score=25.53 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=28.0
Q ss_pred EEeeccccccccccCceEEEEeecCCCCCEEEEEEccccee
Q 026794 186 VRITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRCK 226 (233)
Q Consensus 186 l~~~~~~~~~~~vg~~~~v~i~~~d~~~~ki~Ls~r~~~~v 226 (233)
|.++|..-+.-.+|+++++.+.++. .+++.|..-|=+.+
T Consensus 2 LVLtRk~GEsI~IGd~I~ItVl~v~--g~~VrLGI~APk~v 40 (70)
T 2jpp_A 2 LILTRKVGESINIGDDITITILGVS--GQQVRIGINAPKDV 40 (70)
T ss_dssp EEEEEETTCEEEETTTEEEEEEEEE--TTEEEEEEECCTTS
T ss_pred eEEEccCCCeEEECCCEEEEEEEEe--CCEEEEEEECCCCC
Confidence 4578866665588999999997766 56777776665543
No 92
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=52.08 E-value=19 Score=25.26 Aligned_cols=48 Identities=29% Similarity=0.337 Sum_probs=33.1
Q ss_pred CCCCEEEEE------eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEE
Q 026794 57 NVEDIFVGR------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114 (233)
Q Consensus 57 ~~G~vv~g~------~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi 114 (233)
..++...|+ .|| |+.-++ .+-+-|+|+|.+... ...++.||.|...+.
T Consensus 14 ~~~~~~~G~Vk~f~kGfG-FI~~dd----gg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 14 SNSKRLLGYVATLKDNFG-FIETAN----HDKEIFFHYSEFSGD-----VDSLELGDMVEYSLS 67 (88)
T ss_dssp SSCCCEEEEEEEECSSEE-EEECSS----SSCEEEEETTTCCSC-----TTTCCTTCEEEECCC
T ss_pred CCCCceeEEEEEEECCcc-EEecCC----CCceEEEEEhhhccc-----cCcCCCCCEEEEEEE
Confidence 346667777 355 455442 157999999999754 245788999987664
No 93
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=51.95 E-value=51 Score=22.15 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=26.8
Q ss_pred cEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEe
Q 026794 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (233)
Q Consensus 81 gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k 128 (233)
+-. |+|+|.+.... .++.||.|...+..- .++.-...++
T Consensus 25 ~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~g--~kG~~A~~V~ 63 (74)
T 2k5n_A 25 DNR-YFHVIKVANPD------LIKKDAAVTFEPTTN--NKGLSAYAVK 63 (74)
T ss_dssp CEE-EEEGGGBSSGG------GCCTTCEEEEEEEEC--SSSEEEEEEE
T ss_pred Cce-EEEHhHcccCC------CCCCCCEEEEEEEeC--CCCceeEEEE
Confidence 456 99999997542 588999999988653 3554344333
No 94
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=49.38 E-value=38 Score=22.48 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=29.3
Q ss_pred eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEe
Q 026794 66 DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 117 (233)
Q Consensus 66 ~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd 117 (233)
.|| |+.-++ | +-+-|+|+|.+.... ...++.||.|...+..-+
T Consensus 18 GfG-FI~~~~--g--~~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~~~ 60 (71)
T 3i2z_B 18 GFG-FITPED--G--SKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNGA 60 (71)
T ss_dssp TEE-EEEETT--C--CCCEEEEGGGBCCSS----CCCCCTTCEEEEEEEEET
T ss_pred CcE-EEecCC--C--CccEEEEhHHccccc----CcCCCCCCEEEEEEEECC
Confidence 466 455442 1 468999999997532 234778999998887643
No 95
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=49.33 E-value=52 Score=25.34 Aligned_cols=48 Identities=29% Similarity=0.344 Sum_probs=33.5
Q ss_pred CCCEEEEE--------eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEE
Q 026794 58 VEDIFVGR--------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (233)
Q Consensus 58 ~G~vv~g~--------~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~v 116 (233)
.|...+|+ .||+ +.-++ | +-+-|+|+|.+... ..+..||.|...+...
T Consensus 59 ~g~m~~GtVKwFn~~KGfGF-I~~dd--G--g~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHGF-ITPAD--G--GPDIFLHISDVEGE------YVPVEGDEVTYKMCSI 114 (147)
T ss_dssp HSCCEEEEEEEEETTTTEEE-EEESS--S--CSCEEEEGGGEESS------BCCCTTCEEEEEEEEC
T ss_pred cCCccceEEEEEeCCCCeEE-eccCC--C--CccEEEEeeeecCC------CcCCCCCEEEEEEEec
Confidence 45567777 4664 45442 1 47899999999632 2588999999988764
No 96
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=42.69 E-value=65 Score=20.89 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=24.4
Q ss_pred cEEEEEEccccCcccccCcccccCCCCEEEEEEEEE
Q 026794 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (233)
Q Consensus 81 gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~v 116 (233)
|-+-|+|+|.+..... ..++.||.|...+..-
T Consensus 23 g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 23 GSDVFVHFTAIQGEGF----KTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEEGGGBCSSSC----CCCCTTCEEEEEEEEE
T ss_pred CccEEEEHHHccccCC----CCCCCCCEEEEEEEEC
Confidence 6789999999975422 3477899999888654
No 97
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=42.07 E-value=21 Score=24.12 Aligned_cols=34 Identities=12% Similarity=0.449 Sum_probs=27.3
Q ss_pred cccccCCCCEEEEEEEEEeCCCCeEEEEEeccccCh
Q 026794 99 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134 (233)
Q Consensus 99 ~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~~~dp 134 (233)
+.+.+.+||.|+++|++++ .+++.|.+.+-..-+
T Consensus 8 ~GEsI~IGd~I~ItVl~v~--g~~VrLGI~APk~v~ 41 (70)
T 2jpp_A 8 VGESINIGDDITITILGVS--GQQVRIGINAPKDVA 41 (70)
T ss_dssp TTCEEEETTTEEEEEEEEE--TTEEEEEEECCTTSC
T ss_pred CCCeEEECCCEEEEEEEEe--CCEEEEEEECCCCCc
Confidence 3456778999999999998 788999997755544
No 98
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=40.08 E-value=24 Score=23.34 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=27.0
Q ss_pred cccccCCCCEEEEEEEEEeCCCCeEEEEEeccccCh
Q 026794 99 IRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134 (233)
Q Consensus 99 ~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~~~dp 134 (233)
+.+.+.+||.+.++|++++ .+++.|.+.+-..-+
T Consensus 10 ~GE~I~Igd~I~I~Vl~i~--g~~VrlGI~AP~~v~ 43 (63)
T 2bti_A 10 VGETLMIGDEVTVTVLGVK--GNQVRIGVNAPKEVS 43 (63)
T ss_dssp TTCEEEETTTEEEEEEEEE--TTEEEEEEEECTTSC
T ss_pred CCCeEEeCCCEEEEEEEEe--CCEEEEEEECCCCCc
Confidence 3566778999999999998 688999987754444
No 99
>1t3o_A Carbon storage regulator; CSRA, CSRB, CSRC, mostly beta strands, RNA binding protein, beta sheet surface; NMR {Bacillus subtilis}
Probab=39.78 E-value=17 Score=26.10 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=28.3
Q ss_pred eEEEeeccccccccccCceEEEEeecCCCCCEEEEEEcccce
Q 026794 184 DDVRITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRC 225 (233)
Q Consensus 184 ~gl~~~~~~~~~~~vg~~~~v~i~~~d~~~~ki~Ls~r~~~~ 225 (233)
.=|.++|..-+.-.+|+++++.|.++. .+++.|-.-|=+.
T Consensus 21 ~MLVLtRK~GEsI~IGddI~ItVl~i~--g~qVrLGI~APk~ 60 (95)
T 1t3o_A 21 HMLVLSRKINEAIQIGADIEVKVIAVE--GDQVKLGIDAPKH 60 (95)
T ss_dssp EEEEEECTTCCCEEETTTEEECCCEEC--SSCEEEEEEESSC
T ss_pred eeEEEEccCCCeEEECCCEEEEEEEEe--CCEEEEEEECCCC
Confidence 346799977666689999999997766 4556665554443
No 100
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=39.29 E-value=63 Score=21.50 Aligned_cols=33 Identities=27% Similarity=0.237 Sum_probs=24.3
Q ss_pred cEEEEEEccccCcccccCcccccCCCCEEEEEEEEEe
Q 026794 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 117 (233)
Q Consensus 81 gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd 117 (233)
|-+-|+|+|.+...-. ..++.||.|...+..-+
T Consensus 23 g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~~ 55 (73)
T 3a0j_A 23 DTDVFVHYTAINAKGF----RTLNEGDIVTFDVEPGR 55 (73)
T ss_dssp SCCEEEEGGGBCSSSC----SSCCTTCEEEEEEECCS
T ss_pred CCcEEEEhhhccccCC----CCCCCCCEEEEEEEECC
Confidence 5789999999975422 34778999998876543
No 101
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=38.79 E-value=46 Score=21.97 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=27.1
Q ss_pred EEeeccccccccccCceEEEEeecCCCCCEEEEEEcccce
Q 026794 186 VRITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRC 225 (233)
Q Consensus 186 l~~~~~~~~~~~vg~~~~v~i~~~d~~~~ki~Ls~r~~~~ 225 (233)
|.++|..-+.-.+|+++++.+.++. .+++.|..-|=+.
T Consensus 4 LvLtRk~GE~I~Igd~I~I~Vl~i~--g~~VrlGI~AP~~ 41 (63)
T 2bti_A 4 LILTRRVGETLMIGDEVTVTVLGVK--GNQVRIGVNAPKE 41 (63)
T ss_dssp EEEEEETTCEEEETTTEEEEEEEEE--TTEEEEEEEECTT
T ss_pred EEEeccCCCeEEeCCCEEEEEEEEe--CCEEEEEEECCCC
Confidence 4678866665589999999997766 5566666655443
No 102
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=38.74 E-value=21 Score=31.00 Aligned_cols=59 Identities=10% Similarity=0.064 Sum_probs=39.1
Q ss_pred ccCCeeeeccCCChhhhhhhhcccCCeeEE-Eee---------ccccc------cc--cccCceEEEEeecCCCCCEEEE
Q 026794 157 SSSNSNTIEPLPGLGAIFEELLQEDGIDDV-RIT---------RQGFE------KR--VVSQDLQLWLSNAPPSGKKFTL 218 (233)
Q Consensus 157 ~~g~v~~v~~~~g~~~~~~~l~~~~gv~gl-~~~---------~~~~~------~~--~vg~~~~v~i~~~d~~~~ki~L 218 (233)
+.|.|+.+.++ ++++++.....++ .++ |.+.. .+ .+||.+..+|.+++ +++++.|
T Consensus 99 ViG~Vt~V~~~------~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~-~~~~i~L 171 (308)
T 2nn6_H 99 VVGRITEVQQK------RWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVF-SDGAVSL 171 (308)
T ss_dssp CCEEEEEEETT------EEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEE-TTTEEEE
T ss_pred EEEEEEEEeCc------eEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcC-CCCCEEE
Confidence 77999988754 6677666545553 222 11100 01 57999999999998 4678999
Q ss_pred EEcc
Q 026794 219 LARA 222 (233)
Q Consensus 219 s~r~ 222 (233)
+.|.
T Consensus 172 Str~ 175 (308)
T 2nn6_H 172 HTRS 175 (308)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9985
No 103
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=38.56 E-value=16 Score=30.01 Aligned_cols=99 Identities=12% Similarity=0.257 Sum_probs=62.2
Q ss_pred CCCCEEEEEEEEEeCCCCEEEEEechhhHhhhccCCCCCCEEEEE----eeeEEEEEccCCCCccEEEEEEccccCc---
Q 026794 21 LTGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR----DYGAFIHLRFPDGLYHLTGLVHVSEVSW--- 93 (233)
Q Consensus 21 ~vG~~v~~~Vi~id~~~~~i~lS~k~~~~~~~~~~~~~G~vv~g~----~~G~fV~l~~~~~~~gv~Glv~~sels~--- 93 (233)
..+..+.|-|+++.-+.+.+.+.. |.-..-.++.|+.+.-+ +.|-||.|. +.-.+|+-+++...
T Consensus 75 ~~~~~th~GVlEF~A~EG~v~lP~----wmm~~L~l~~gd~V~i~~~~LPkgt~vklq-----P~~~~Fldi~npKavLE 145 (208)
T 1zc1_A 75 ETGRVTHGGVLEFIAEEGRVYLPQ----WMMETLGIQPGSLLQISSTDVPLGQFVKLE-----PQSVDFLDISDPKAVLE 145 (208)
T ss_dssp TTCCEEEEEEEEECCSSCEEEECH----HHHHHHTCCTTCEEEEEEEECCCCSEEEEE-----CCHHHHHTSSCHHHHHH
T ss_pred CCCCEEEEEEEEEEcCCCeEEcCH----HHHHhcCCCCCCEEEEEEeEcCCCCEEEEe-----ECccccccccCHHHHHH
Confidence 457889999999999999998865 43222257889988776 889999997 33344443322111
Q ss_pred ccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeccccCh
Q 026794 94 DLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134 (233)
Q Consensus 94 ~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~~~dp 134 (233)
....+ ...+..||.|.+. ..+....|.+-++.+++
T Consensus 146 ~~LRn-fstLT~Gd~I~i~-----~~~~~y~l~V~e~kP~~ 180 (208)
T 1zc1_A 146 NVLRN-FSTLTVDDVIEIS-----YNGKTFKIKILEVKPES 180 (208)
T ss_dssp HHHHH-CSCEESSSEEEEE-----ETTEEEEEEEEEEECSS
T ss_pred HHhhc-CccccCCCEEEEE-----eCCEEEEEEEEEEcCCC
Confidence 01111 2237789988763 23455666666665543
No 104
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=37.90 E-value=49 Score=20.77 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=14.5
Q ss_pred EEEEEEeCCCCeEEEEEec
Q 026794 111 VKVIKIDREKSRITLSIKQ 129 (233)
Q Consensus 111 vkVi~vd~e~~ri~LS~k~ 129 (233)
+.|.++|.+++++.+.+.-
T Consensus 23 g~v~~v~~~k~~v~V~v~~ 41 (58)
T 1nz9_A 23 GTVTEINPERGKVKVMVTI 41 (58)
T ss_dssp EEEEEEETTTTEEEEEEES
T ss_pred EEEEEEcCCCCEEEEEEEe
Confidence 4689999888888776543
No 105
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=37.46 E-value=69 Score=24.21 Aligned_cols=61 Identities=30% Similarity=0.420 Sum_probs=39.6
Q ss_pred EEEEEcc-------CCCCccEEEEEEccccCccccc------CcccccCCCCEEEE----------EEEEEeCCCCeEEE
Q 026794 69 AFIHLRF-------PDGLYHLTGLVHVSEVSWDLIQ------DIRDILNEGDEVRV----------KVIKIDREKSRITL 125 (233)
Q Consensus 69 ~fV~l~~-------~~~~~gv~Glv~~sels~~~~~------~~~~~~~~Gd~V~v----------kVi~vd~e~~ri~L 125 (233)
+||+..- ..+++|+.||+.. -++..-+. .....|++||.|++ .|.++|.+++++.+
T Consensus 46 VfVe~~~~~~~~~~v~~t~gV~~fvg~-~v~~~Ei~~il~~~~~~~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V 124 (152)
T 3p8b_B 46 IFVEAPNKGVVDEAIRGIRHARGVLPG-EVPFKEIEHFLEEKPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVV 124 (152)
T ss_dssp EEEEESSHHHHHHHHTTCTTEEEECSS-CBCGGGTGGGCCCSCTTTTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred EEEEEEchHHHHHHHhCCCCEEEeCCC-CCCHHHHHHHhCcCCccccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEE
Confidence 7887753 1124588888643 33333221 23345889999996 59999999999888
Q ss_pred EEecc
Q 026794 126 SIKQL 130 (233)
Q Consensus 126 S~k~~ 130 (233)
.+-..
T Consensus 125 ~v~~~ 129 (152)
T 3p8b_B 125 QFIDA 129 (152)
T ss_dssp EESSC
T ss_pred EEEec
Confidence 77543
No 106
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=37.42 E-value=28 Score=23.78 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=27.2
Q ss_pred CcccccCCCCEEEEEEEEEeCCCCeEEEEEeccccCh
Q 026794 98 DIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEEDP 134 (233)
Q Consensus 98 ~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~~~dp 134 (233)
.+.+.+.+||.|+++|+++. .+++.|.+.+-..-+
T Consensus 19 K~GEsI~IGddI~ItVl~i~--g~qVrLGI~APk~V~ 53 (73)
T 1vpz_A 19 RVGETLMVGDDVTVTVLGVK--GNQVRIGVNAPKEVA 53 (73)
T ss_dssp ETTCEEEETTTEEEEEEEEE--TTEEEEEEEEETTSC
T ss_pred cCCCEEEeCCCEEEEEEEEe--CCEEEEEEECCCCCe
Confidence 34567889999999999998 788999887644333
No 107
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=36.96 E-value=19 Score=24.91 Aligned_cols=60 Identities=18% Similarity=0.063 Sum_probs=38.0
Q ss_pred CCEEEEEeee-EEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEE
Q 026794 59 EDIFVGRDYG-AFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSI 127 (233)
Q Consensus 59 G~vv~g~~~G-~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~ 127 (233)
|.++++.+.| ..|.+++ |..-++|++---.. -.-.+.+||.|.+.+...|..+++|....
T Consensus 18 G~Vik~l~n~~f~V~l~n-----G~~~~c~i~GK~Rk----~~I~Il~GD~V~ve~~~yd~~kgrIi~R~ 78 (79)
T 3i4o_A 18 GRVVEPLPNAMFRIELEN-----GHKVLAHISGKMRQ----HYIRILPEDRVVVELSPYDLSRGRIVYRY 78 (79)
T ss_dssp EEEEEEETTTEEEEEETT-----SCEEEEEECHHHHH----TTCCCCTTCEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEcCCCEEEEEeCC-----CCEEEEEeCcceec----CCccCCCCCEEEEEECccCCCcEEEEEEc
Confidence 5555555333 4677763 66667776643221 01126789999999888887788887643
No 108
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=35.69 E-value=1.2e+02 Score=23.00 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=29.6
Q ss_pred cEEEEEEccccCcccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEec
Q 026794 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQ 129 (233)
Q Consensus 81 gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~ 129 (233)
+-+-|+|+|.|....+ ..++.||.|...+..-+ ++.-...+..
T Consensus 39 g~DvFvH~s~i~~~g~----~~l~eG~~V~f~~~~g~--kG~~A~~V~~ 81 (148)
T 3ts2_A 39 PVDVFVHQSKLHMEGF----RSLKEGEAVEFTFKKSA--KGLESIRVTG 81 (148)
T ss_dssp EEEEEEEGGGBCSSSS----CCCCTTCEEEEEEEEET--TEEEEEEEES
T ss_pred CccEEEEhHHhcccCC----ccCCCCCEEEEEEEEcc--ccchhhcccc
Confidence 6789999999965432 34678999999988754 4433444433
No 109
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=34.17 E-value=55 Score=22.25 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=27.3
Q ss_pred EEeeccccccccccCceEEEEeecCCCCCEEEEEEcccce
Q 026794 186 VRITRQGFEKRVVSQDLQLWLSNAPPSGKKFTLLARAGRC 225 (233)
Q Consensus 186 l~~~~~~~~~~~vg~~~~v~i~~~d~~~~ki~Ls~r~~~~ 225 (233)
|.++|..-+.-.+|+++++.+.++. ++++.|-.-|=+.
T Consensus 14 LvLtRK~GEsI~IGddI~ItVl~i~--g~qVrLGI~APk~ 51 (73)
T 1vpz_A 14 LILTRRVGETLMVGDDVTVTVLGVK--GNQVRIGVNAPKE 51 (73)
T ss_dssp EEEEEETTCEEEETTTEEEEEEEEE--TTEEEEEEEEETT
T ss_pred EEEEccCCCEEEeCCCEEEEEEEEe--CCEEEEEEECCCC
Confidence 5688876666689999999997766 5566665554443
No 110
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=32.70 E-value=45 Score=23.63 Aligned_cols=46 Identities=24% Similarity=0.233 Sum_probs=31.5
Q ss_pred CCEEEEE------eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEE
Q 026794 59 EDIFVGR------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVI 114 (233)
Q Consensus 59 G~vv~g~------~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi 114 (233)
.....|+ .||. +.-++ | +-+-|+|+|.+... ...++.||.|...+.
T Consensus 16 ~~~~~G~Vkwf~KGfGF-I~~dd--g--~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAMKEAFGF-IERGD--V--VKEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCCCSSEEE-EECSS--S--CCCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred CcceeEEEEEEeCCceE-EecCC--C--CceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 3455666 3554 44432 1 47899999999754 245788999998884
No 111
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=32.58 E-value=1e+02 Score=20.03 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=24.8
Q ss_pred cEEEEEEccccCcccccCcccccCCCCEEEEEEEEEe
Q 026794 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 117 (233)
Q Consensus 81 gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd 117 (233)
+-+-|+|+|.+...- ...++.||.|...+..-+
T Consensus 24 g~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~~~ 56 (67)
T 3cam_A 24 GEDLFAHFSAINMEG----FKTLKEGQRVSFDVTTGP 56 (67)
T ss_dssp CCCEEEEGGGBCGGG----GSSCCTTCEEEEEEEEET
T ss_pred CccEEEEHHHccccC----CCCCCCCCEEEEEEEECC
Confidence 578999999996432 234778999999886643
No 112
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=32.35 E-value=1.3e+02 Score=20.92 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCCCEEEEE------eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEEEEE
Q 026794 57 NVEDIFVGR------DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (233)
Q Consensus 57 ~~G~vv~g~------~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~v 116 (233)
......+|+ .|| |+.-++ + +-+-|+|+|.+... ...++.||.|...+..-
T Consensus 14 s~~~~~~G~Vkwf~KGfG-FI~~dd--g--g~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~~ 69 (89)
T 1wfq_A 14 SAALRETGVIEKLLTSYG-FIQCSE--R--QARLFFHCSQYNGN-----LQDLKVGDDVEFEVSSD 69 (89)
T ss_dssp SCCCEEEEEEEEECSSEE-EEEETT--T--TEEEEEETTTCSSC-----TTTCCTTCCEEEEEEEC
T ss_pred CcccccceEEEEEeCCee-EEecCC--C--CccEEEEhHHhhCc-----cCCCCCCCEEEEEEEEC
Confidence 334556666 355 455542 1 58999999999754 24578899999888764
No 113
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=29.64 E-value=1.2e+02 Score=20.51 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=30.6
Q ss_pred EEEEEEEEEeCCCCEEEEEechhh---H-----------hhhccCCCCCCEEEEE
Q 026794 25 IISVKVIQANEEMKKLVFSEKDAV---W-----------NKYSSRVNVEDIFVGR 65 (233)
Q Consensus 25 ~v~~~Vi~id~~~~~i~lS~k~~~---~-----------~~~~~~~~~G~vv~g~ 65 (233)
...+.|..+|.+.+.+.++.-... | ...+..+++|+.|.-.
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~ 63 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFN 63 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEE
Confidence 477899999999999999965431 2 2346778999887744
No 114
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=28.64 E-value=29 Score=23.38 Aligned_cols=15 Identities=40% Similarity=0.771 Sum_probs=12.3
Q ss_pred cCcccccCCCCEEEE
Q 026794 97 QDIRDILNEGDEVRV 111 (233)
Q Consensus 97 ~~~~~~~~~Gd~V~v 111 (233)
..++.+|++||.|+|
T Consensus 12 ~~LrK~F~~GDHVkV 26 (69)
T 2do3_A 12 QELRKYFKMGDHVKV 26 (69)
T ss_dssp CCCCSSCCTTCEEEE
T ss_pred HHceeeccCCCeEEE
Confidence 456788999999986
No 115
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=27.44 E-value=1.6e+02 Score=20.52 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=24.8
Q ss_pred cEEEEEEccccCcccccCcccccCCCCEEEEEEEEEe
Q 026794 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKID 117 (233)
Q Consensus 81 gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~vd 117 (233)
+-+-|+|+|.|...-+ ..+..||.|...+..=+
T Consensus 38 g~DvFVH~s~i~~~g~----~~L~eG~~V~f~v~~g~ 70 (90)
T 3ulj_A 38 PVDVFVHQSKLYMEGF----RSLKEGEPVEFTFKKSS 70 (90)
T ss_dssp EEEEEEEGGGBCCSSS----CCCCTTCEEEEEEEEET
T ss_pred CccEEEEeehhcccCC----CccCCCCEEEEEEEECC
Confidence 5789999999964422 34778999999887643
No 116
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=26.88 E-value=1.4e+02 Score=19.86 Aligned_cols=42 Identities=19% Similarity=0.081 Sum_probs=27.9
Q ss_pred cEEEEEEccccC-cccccCcccccCCCCEEEEEEEEEeCCCCeEEEEEe
Q 026794 81 HLTGLVHVSEVS-WDLIQDIRDILNEGDEVRVKVIKIDREKSRITLSIK 128 (233)
Q Consensus 81 gv~Glv~~sels-~~~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k 128 (233)
|-+-|+|+|.+. ...+ ..++.||.|...+..- +++.-...++
T Consensus 22 G~DvFvH~s~i~~~~g~----~~l~~G~~V~F~~~~g--~kG~~A~~V~ 64 (74)
T 2kcm_A 22 GESYFLHFSELLDKKDE----GKLVKGSMVHFDPTPT--PKGLAAKAIS 64 (74)
T ss_dssp SCEECCCGGGSSCSGGG----TTCCTTSEEEEEEECT--TTSCEEEEEE
T ss_pred CceEEEEhhhcccCCCC----CCCCCCCEEEEEEEEC--CCCceeEEEE
Confidence 578999999997 4322 3478899999887632 3554444443
No 117
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=31.26 E-value=15 Score=24.52 Aligned_cols=32 Identities=25% Similarity=0.165 Sum_probs=23.4
Q ss_pred cEEEEEEccccCcccccCcccccCCCCEEEEEEEEE
Q 026794 81 HLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKVIKI 116 (233)
Q Consensus 81 gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkVi~v 116 (233)
+-+-|+|+|.+.... ...++.||.|...+..-
T Consensus 27 g~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~~ 58 (70)
T 2lss_A 27 GKDVFVHKSAVDAAG----LHSLEEGQDVIFDLEEK 58 (70)
Confidence 578999999996532 23467899998877543
No 118
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=24.36 E-value=45 Score=23.20 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=17.7
Q ss_pred CcccccCCCCEEEEEEEEEeC
Q 026794 98 DIRDILNEGDEVRVKVIKIDR 118 (233)
Q Consensus 98 ~~~~~~~~Gd~V~vkVi~vd~ 118 (233)
..+..|++||+|.++++-.|.
T Consensus 8 tDr~iYrPGetV~~~~~~~~~ 28 (102)
T 2p9r_A 8 TDKSIYKPGQTVKFRVVSMDE 28 (102)
T ss_dssp ESCSEECTTCEEEEEEEEECG
T ss_pred CCCcccCCCCEEEEEEEEECC
Confidence 346779999999999999875
No 119
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=22.48 E-value=1.9e+02 Score=19.83 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=30.8
Q ss_pred EEEEEEEEEeCCCCEEEEEechhh---H-----------hhhccCCCCCCEEEEE
Q 026794 25 IISVKVIQANEEMKKLVFSEKDAV---W-----------NKYSSRVNVEDIFVGR 65 (233)
Q Consensus 25 ~v~~~Vi~id~~~~~i~lS~k~~~---~-----------~~~~~~~~~G~vv~g~ 65 (233)
.+.+.|..+|.+.+.|.|+.-... | ...+..+++|+.|.-.
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~ 71 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFN 71 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEE
Confidence 578999999999999999965431 2 2346778999988744
No 120
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.33 E-value=36 Score=27.48 Aligned_cols=97 Identities=7% Similarity=0.166 Sum_probs=58.8
Q ss_pred CCCEEEEEEEEEeCCCCEEEEEechhhHhhhccCCCCCCEEEEE----eeeEEEEEccCCCCccEEEEEEccccCc---c
Q 026794 22 TGSIISVKVIQANEEMKKLVFSEKDAVWNKYSSRVNVEDIFVGR----DYGAFIHLRFPDGLYHLTGLVHVSEVSW---D 94 (233)
Q Consensus 22 vG~~v~~~Vi~id~~~~~i~lS~k~~~~~~~~~~~~~G~vv~g~----~~G~fV~l~~~~~~~gv~Glv~~sels~---~ 94 (233)
.+....|-|+++.-+.+.+.+.. |.-..-.++.|+.+.-+ +.|-||.|. +.-.+|+-+++... .
T Consensus 71 ~~r~th~GVlEFsA~EG~i~lP~----wmm~~L~l~~gd~V~v~~~~LPkgt~vklq-----P~~~~Fl~i~npKavLE~ 141 (190)
T 2yuj_A 71 SDRMTHCGVLEFVADEGICYLPH----WMMQNLLLEEGGLVQVESVNLQVATYSKFQ-----PQSPDFLDITNPKAVLEN 141 (190)
T ss_dssp TTEEEEEEEEECCCBTTBEECCS----HHHHHHTCCTTEEEEEEEECCCCCSEEEEE-----ESSHHHHHSSCHHHHHHH
T ss_pred CCceEEEEEEEEecCCCeEEeCH----HHHHhcCCCCCCEEEEEEeecCCCcEEEEE-----ECCccccccccHHHHHHH
Confidence 45667788888877777777764 43223346889988777 889999997 33344443322110 0
Q ss_pred cccCcccccCCCCEEEEEEEEEeCCCCeEEEEEeccccC
Q 026794 95 LIQDIRDILNEGDEVRVKVIKIDREKSRITLSIKQLEED 133 (233)
Q Consensus 95 ~~~~~~~~~~~Gd~V~vkVi~vd~e~~ri~LS~k~~~~d 133 (233)
...+ ...+..||.|.+. ..+....|.+-+++++
T Consensus 142 ~Lrn-fstLT~Gd~I~I~-----~~~~~y~l~V~e~kP~ 174 (190)
T 2yuj_A 142 ALRN-FACLTTGDVIAIN-----YNEKIYELRVMETKPD 174 (190)
T ss_dssp HHTT-CCEECTTCEEEEE-----SSSCEEEEEEEEESSS
T ss_pred HHhc-CcccccCCEEEEE-----eCCEEEEEEEEEEcCC
Confidence 1122 2227899988764 3456677776666553
No 121
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=20.68 E-value=2e+02 Score=21.50 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=31.3
Q ss_pred CCCEEEEE-----eeeEEEEEccCCCCccEEEEEEccccCcccccCcccccCCCCEEEEEE
Q 026794 58 VEDIFVGR-----DYGAFIHLRFPDGLYHLTGLVHVSEVSWDLIQDIRDILNEGDEVRVKV 113 (233)
Q Consensus 58 ~G~vv~g~-----~~G~fV~l~~~~~~~gv~Glv~~sels~~~~~~~~~~~~~Gd~V~vkV 113 (233)
.|..+.|+ +.+++|.+.+ . -..+--+|++++-.-.-......|.+||+|+|--
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n--~-w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~ 71 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFEN--N-WQSERQIPFGDVRLPPPADYNKEITEGDEVEVYS 71 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETT--C-TTCCEEEEGGGEECCCCC----CCCTTCEEEEEE
T ss_pred CCCEEEEEEEEEeCCcEEEEEcc--c-cCcceEechhhEEcCCCcccccCCCCCCEEEEEe
Confidence 37777777 6678888863 1 1124567777765432222334589999998743
Done!