BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026795
         (233 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WP7|A Chain A, Crystal Structure Of Desumoylase(Duf862)
          Length = 168

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 24/135 (17%)

Query: 18  PVYLNVYDLTPMNGYAYWLG--------LGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEP 69
           PV L VYDL+   G A  L          GI+H+ + VH  E+ FG+   S+        
Sbjct: 8   PVKLYVYDLS--KGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSSGISSC------- 58

Query: 70  KQCPGFTF----RKSILIGRTDLGPREVRAFMEKLAEE-YSGNTYHLITKNCNHFCNDVC 124
              PG T        + +G T++       ++  L E  + G  Y+L   NCN F N+V 
Sbjct: 59  --TPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVA 116

Query: 125 LKLTRKPIPRWVNRL 139
             LT + IP ++  L
Sbjct: 117 QFLTGRKIPSYITDL 131


>pdb|3EBQ|A Chain A, Crystal Structure Of Human Pppde1
          Length = 170

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 24/135 (17%)

Query: 18  PVYLNVYDLTPMNGYAYWLGL--------GIYHSGVQVHGVEYGFGAHDHSTTGIFEVEP 69
           PV L VYDL+   G A  L          GI+H+ + VH  E+ FG+   S+        
Sbjct: 10  PVKLYVYDLS--KGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSGGISSC------- 60

Query: 70  KQCPGFTF----RKSILIGRTDLGPREVRAFMEKLAEE-YSGNTYHLITKNCNHFCNDVC 124
              PG T        + +G T++       ++  L E  + G  Y+L   NCN F N+V 
Sbjct: 61  --PPGGTLLGPPDSVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVA 118

Query: 125 LKLTRKPIPRWVNRL 139
             LT + IP ++  L
Sbjct: 119 QFLTGRKIPSYITDL 133


>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
 pdb|4A5W|B Chain B, Crystal Structure Of C5b6
 pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
          Length = 913

 Score = 27.3 bits (59), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 47  VHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSG 106
           V+ + Y F + +   +G+ E E K C     +K +L  +      E R    KL+E++ G
Sbjct: 353 VYDLLYQFSSEELKNSGLTEEEAKHCVRIETKKRVLFAKKT--KVEHRCTTNKLSEKHEG 410

Query: 107 N 107
           +
Sbjct: 411 S 411


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.141    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,744,042
Number of Sequences: 62578
Number of extensions: 236104
Number of successful extensions: 455
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 3
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)