BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026795
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486
PE=2 SV=1
Length = 224
Score = 208 bits (529), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 129/183 (70%), Gaps = 5/183 (2%)
Query: 10 RKKKTGSV---PVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFE 66
R + +G PVYLNVYDLTP+N Y YW G+GI+HSG++ H +EY +GAH++ T+G++E
Sbjct: 16 RDESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYE 75
Query: 67 VEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLK 126
VEP+ CPGF FR+S+L+G T + + R++MEKL+ +Y G+TYHLI KNCNHF +VCL+
Sbjct: 76 VEPRNCPGFIFRRSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQ 135
Query: 127 LTRKPIPRWVNRLARLGFLCNCVLPAGLNETKVRQVRSDDRVTEGEKKKLRSHSSRYSSS 186
LT KPIP W+NRLAR+G CNC+LP + T V + +R+ ++ + S +S S
Sbjct: 136 LTGKPIPGWINRLARVGSFCNCLLPESIQLTAVSAL--PERLEFSDEDESNSEASSVSDE 193
Query: 187 SDS 189
S
Sbjct: 194 EGS 196
>sp|Q5PQ09|DESI2_XENLA Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1
Length = 192
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 96/161 (59%), Gaps = 13/161 (8%)
Query: 18 PVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQC----P 73
P+ LNVYD+ +N Y LG+G++HSG+QV+G E+ +G H + +G+FE+ P
Sbjct: 5 PIILNVYDMYWINEYTSSLGIGVFHSGIQVYGREFAYGGHPYPFSGVFEISPGDSTELGD 64
Query: 74 GFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIP 133
F F+++I +G TD ++ +E+L +EY GN YHL+ KNCNHF + + L K IP
Sbjct: 65 TFKFKEAIALGSTDFTENDIEKIIEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIP 124
Query: 134 RWVNRLARLG----FLCNC-----VLPAGLNETKVRQVRSD 165
RWVNRLA FL +C + PA L + ++++ +
Sbjct: 125 RWVNRLAYFSTCVPFLQSCLPKEWLTPAALQSSISQELQDE 165
>sp|Q9D291|DESI2_MOUSE Desumoylating isopeptidase 2 OS=Mus musculus GN=Desi2 PE=2 SV=1
Length = 194
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 96/160 (60%), Gaps = 13/160 (8%)
Query: 19 VYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQC----PG 74
V LNVYD+ MN Y +G+G++HSG++V+G E+ +G H + +GIFE+ P
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66
Query: 75 FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPR 134
F F++++++G TD ++ +E+L +EY GN YHL+ KNCNHF + + L K IPR
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 135 WVNRLARLG----FLCNC-----VLPAGLNETKVRQVRSD 165
W+NRLA FL +C + PA L + ++++ +
Sbjct: 127 WINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQDE 166
>sp|Q5ZIV7|DESI2_CHICK Desumoylating isopeptidase 2 OS=Gallus gallus GN=DESI2 PE=2 SV=1
Length = 193
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 13/158 (8%)
Query: 19 VYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQC----PG 74
V LNVYD+ MN Y LG+G++HSG++V+G E+ +G H + +GIFE+ P
Sbjct: 6 VILNVYDMYWMNEYTSSLGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 65
Query: 75 FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPR 134
F F++++++G TD ++ +E+L +E+ GN YHL+ KNCNHF + + L K IPR
Sbjct: 66 FKFKEAVVLGSTDFMEDDIEKIVEELGKEFKGNAYHLMHKNCNHFSSALSEILCGKEIPR 125
Query: 135 WVNRLARLG----FLCNC-----VLPAGLNETKVRQVR 163
WVNRLA FL +C + PA L + ++++
Sbjct: 126 WVNRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQ 163
>sp|Q6DC39|DESI2_DANRE Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1
Length = 196
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 96/159 (60%), Gaps = 13/159 (8%)
Query: 18 PVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQC----P 73
PV LNVYD+ +N + LG+G++HSG++++G E+ +G H + +GIFE+ P
Sbjct: 5 PVILNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDATELGE 64
Query: 74 GFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIP 133
F F+++I++G TD +V +E++ +EY GN YHL+ KNCNHF + + L + IP
Sbjct: 65 TFKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIP 124
Query: 134 RWVNRLARLG----FLCNC-----VLPAGLNETKVRQVR 163
RWVNRLA FL +C + PA L + ++++
Sbjct: 125 RWVNRLAYFSSCVPFLQSCLPKEWLTPAALQSSVSQELQ 163
>sp|A3QRX8|DESI2_PIG Desumoylating isopeptidase 2 OS=Sus scrofa GN=DESI2 PE=2 SV=1
Length = 194
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 13/158 (8%)
Query: 19 VYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQC----PG 74
V LNVYD+ MN Y +G+G++HSG++V+G E+ +G H + +GIFE+ P
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66
Query: 75 FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPR 134
F F++++++G TD ++ +E+L +EY GN YHL+ KNCNHF + + L K IPR
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 135 WVNRLARLG----FLCNC-----VLPAGLNETKVRQVR 163
W+NRLA FL +C + PA L + ++++
Sbjct: 127 WINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQ 164
>sp|Q5R456|DESI2_PONAB Desumoylating isopeptidase 2 OS=Pongo abelii GN=DESI2 PE=2 SV=1
Length = 194
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 95/159 (59%), Gaps = 13/159 (8%)
Query: 19 VYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQC----PG 74
V LNVYD+ MN Y +G+G++HSG++V+G E+ +G H + +GIFE+ P
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66
Query: 75 FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPR 134
F F++++++G TD ++ +E+L +EY GN YHL+ KNCNHF + + L K IPR
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 135 WVNRLARLG----FLCNC-----VLPAGLNETKVRQVRS 164
W+NRLA FL +C + PA L + ++++
Sbjct: 127 WINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165
>sp|Q9BSY9|DESI2_HUMAN Desumoylating isopeptidase 2 OS=Homo sapiens GN=DESI2 PE=1 SV=1
Length = 194
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 95/159 (59%), Gaps = 13/159 (8%)
Query: 19 VYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQC----PG 74
V LNVYD+ MN Y +G+G++HSG++V+G E+ +G H + +GIFE+ P
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGET 66
Query: 75 FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPR 134
F F++++++G TD ++ +E+L +EY GN YHL+ KNCNHF + + L K IPR
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 135 WVNRLARLG----FLCNC-----VLPAGLNETKVRQVRS 164
W+NRLA FL +C + PA L + ++++
Sbjct: 127 WINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQD 165
>sp|Q5XIT6|DESI2_RAT Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2
SV=1
Length = 194
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 13/158 (8%)
Query: 19 VYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPG---- 74
V LNVYD+ MN Y +G+G++HSG++V+G E+ +G H + +GIFE+ P
Sbjct: 7 VVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELGET 66
Query: 75 FTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPR 134
F F++++++G TD ++ +E+L +EY GN YHL+ KNCNHF + + L K IPR
Sbjct: 67 FKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPR 126
Query: 135 WVNRLARLG----FLCNC-----VLPAGLNETKVRQVR 163
W+NRLA FL +C + PA L + ++++
Sbjct: 127 WINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQ 164
>sp|Q8X1T0|HAG1_SCHPO DeSI-like protein hag1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hag1 PE=1 SV=1
Length = 201
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 9/173 (5%)
Query: 19 VYLNVYDL---TPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHD-HSTTGIFEVEPKQ-CP 73
VY+NVYDL +P+N A+ LGLGIYH+G+ + G EY FGAH+ +TG+F P+
Sbjct: 3 VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLE 62
Query: 74 GFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIP 133
G +R SI + L +V + +L++E++G +Y L+ +NCNHF N ++LT PIP
Sbjct: 63 GCRWRCSIALPNCTLPKPDVDRILIRLSQEFTGLSYSLLERNCNHFTNAAAIELTGSPIP 122
Query: 134 RWVNRLARLGF----LCNCVLPAGLNETKVRQVRSDDRVTEGEKKKLRSHSSR 182
++NR++R+G + N +L G T SD E+ + S S +
Sbjct: 123 SFLNRISRIGLAFPTITNALLQHGQKNTSDVDDSSDSSSDVDEETLIVSKSKK 175
>sp|Q4KM30|DESI1_RAT Desumoylating isopeptidase 1 OS=Rattus norvegicus GN=Desi1 PE=2
SV=1
Length = 168
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 18 PVYLNVYDLTPMNGYAYWLG--------LGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEP 69
PV L VYDL+ G A L GI+H+ + VH E+ FG+ S+
Sbjct: 8 PVKLYVYDLS--KGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSSGISSC------- 58
Query: 70 KQCPGFTF----RKSILIGRTDLGPREVRAFMEKLAEE-YSGNTYHLITKNCNHFCNDVC 124
PG T + +G T++ ++ L E + G Y+L NCN F N+V
Sbjct: 59 --TPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVA 116
Query: 125 LKLTRKPIPRWVNRL 139
LT + IP ++ L
Sbjct: 117 QFLTGRKIPSYITDL 131
>sp|Q9CQT7|DESI1_MOUSE Desumoylating isopeptidase 1 OS=Mus musculus GN=Desi1 PE=1 SV=1
Length = 168
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 18 PVYLNVYDLTPMNGYAYWLG--------LGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEP 69
PV L VYDL+ G A L GI+H+ + VH E+ FG+ S+
Sbjct: 8 PVKLYVYDLS--KGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSSGISSC------- 58
Query: 70 KQCPGFTF----RKSILIGRTDLGPREVRAFMEKLAEE-YSGNTYHLITKNCNHFCNDVC 124
PG T + +G T++ ++ L E + G Y+L NCN F N+V
Sbjct: 59 --TPGGTLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVA 116
Query: 125 LKLTRKPIPRWVNRL 139
LT + IP ++ L
Sbjct: 117 QFLTGRKIPSYITDL 131
>sp|Q6ICB0|DESI1_HUMAN Desumoylating isopeptidase 1 OS=Homo sapiens GN=DESI1 PE=1 SV=1
Length = 168
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 24/135 (17%)
Query: 18 PVYLNVYDLTPMNGYA-----YWLG---LGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEP 69
PV L VYDL+ G A LG GI+H+ + VH E+ FG+ S+
Sbjct: 8 PVKLYVYDLS--KGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSGGISSC------- 58
Query: 70 KQCPGFTF----RKSILIGRTDLGPREVRAFMEKLAEE-YSGNTYHLITKNCNHFCNDVC 124
PG T + +G T++ ++ L E + G Y+L NCN F N+V
Sbjct: 59 --PPGGTLLGPPDSVVDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVA 116
Query: 125 LKLTRKPIPRWVNRL 139
LT + IP ++ L
Sbjct: 117 QFLTGRKIPSYITDL 131
>sp|Q6GLM5|DESI1_XENLA Desumoylating isopeptidase 1 OS=Xenopus laevis GN=desi1 PE=2 SV=1
Length = 169
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 39 GIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFME 98
GI+H+ + V E+ +G GI P + + +G T++ ++
Sbjct: 36 GIWHTSIIVFDEEFFYGRE-----GITSCLPGRTMLGEPDSVMELGITEVTEEIFLEYLS 90
Query: 99 KLAEE-YSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRL 139
L E +SG +YHL NCN F N+V LT K IP ++ L
Sbjct: 91 SLGESGFSGESYHLFDHNCNTFSNEVAQFLTGKKIPSYITEL 132
>sp|Q6YXP5|YCF1_PHYPA Putative membrane protein ycf1 OS=Physcomitrella patens subsp.
patens GN=ycf1 PE=3 SV=1
Length = 1603
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 107 NTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLGFLCNCVLPAGLNETKVRQVRSDD 166
N + L+ K F L+ K +PRW ++L F V+ G+ + + R+V++
Sbjct: 564 NKFILLLKKLFTFHKKFALQEISKELPRWTSKLRNDKF---DVIAIGITDIRQRKVKNLG 620
Query: 167 RVTEGEKKKLRSHSSRYSSSSDSVPRPQLSSCPTASAMRSSSRQ 210
+ +G++K+ R R+S SD R +L +MRS R+
Sbjct: 621 YLIKGKEKR-RKIVRRFSQQSDF--RRRL----VKGSMRSRRRK 657
>sp|Q9P7M6|YIOC_SCHPO Hid-1 family protein P27G11.12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAP27G11.12 PE=3 SV=1
Length = 797
Score = 33.1 bits (74), Expect = 1.7, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 17/81 (20%)
Query: 128 TRKPIPRWVNRLARLGFLCNCVLPAGLNETKVRQVRSDDRVTEGEKKKLRSHSSRYSSSS 187
++ P P + + GF T ++ V S D +T+G K LRS+S R S
Sbjct: 592 SKSPTPYYPIESSEFGF------------TNLKDVTSKDEITDGFDKALRSNSLRTHRDS 639
Query: 188 DSV-----PRPQLSSCPTASA 203
V RPQL T SA
Sbjct: 640 RPVQPLLKQRPQLHRALTESA 660
>sp|P38545|RAN_PLAFA GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1
Length = 214
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 66 EVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSG--NTYHLITKNCNHFCNDV 123
E E K P L +T+ G + + E++ G + Y+ I +C DV
Sbjct: 33 EFEKKYIPTLGVEVHPLKFQTNFGKTQFNVWDTAGQEKFGGLRDGYY-IKSDCAIIMFDV 91
Query: 124 CLKLTRKPIPRWVNRLARLGFLCNCVLPAGLNETKVRQVRS 164
++T K +P W + R+ VL + K RQV+S
Sbjct: 92 SSRITYKNVPNWYRDITRVCETIPMVLVGNKVDVKDRQVKS 132
>sp|C5DWK1|STS1_ZYGRC Tethering factor for nuclear proteasome STS1 OS=Zygosaccharomyces
rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC
568 / NRRL Y-229) GN=STS1 PE=3 SV=1
Length = 326
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 118 HFCNDVCLKLTRKPIPR-WVNRLARLGFLCNCVLPAGLNETKVRQVRSDDRVTEGEKKKL 176
H DV + + P+ R W+ +L LC+ +L LN+ K V K
Sbjct: 247 HIARDVIMTVNDAPLLRNWIQKLELYNELCHGILTKPLNQFKSLAVVDAGVTDSNSTKGT 306
Query: 177 RSHSSRYSSSSDS 189
+ +R+S S+D+
Sbjct: 307 NATRNRWSGSTDN 319
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,579,517
Number of Sequences: 539616
Number of extensions: 3503428
Number of successful extensions: 12098
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 11068
Number of HSP's gapped (non-prelim): 900
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)