Query 026795
Match_columns 233
No_of_seqs 159 out of 458
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 12:49:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0324 Uncharacterized conser 100.0 7E-62 1.5E-66 424.4 15.7 169 13-181 10-183 (214)
2 PF05903 Peptidase_C97: PPPDE 100.0 7.9E-48 1.7E-52 319.5 10.2 137 18-154 2-151 (151)
3 PF04970 LRAT: Lecithin retino 95.4 0.0073 1.6E-07 48.1 1.5 17 107-123 103-119 (125)
4 PF05608 DUF778: Protein of un 95.1 0.084 1.8E-06 44.2 6.9 40 89-128 75-114 (136)
5 PF09601 DUF2459: Protein of u 73.0 5.3 0.00011 34.4 4.1 42 86-128 96-160 (173)
6 PF13387 DUF4105: Domain of un 69.3 6.8 0.00015 33.0 3.9 55 80-134 97-155 (176)
7 PF08405 Calici_PP_N: Viral po 63.1 12 0.00026 35.8 4.6 83 39-138 21-107 (358)
8 PF04046 PSP: PSP; InterPro: 49.2 25 0.00053 24.8 3.2 35 119-159 5-41 (48)
9 KOG3150 Uncharacterized conser 47.0 56 0.0012 28.7 5.7 54 75-128 74-130 (182)
10 PF11931 DUF3449: Domain of un 46.0 6.7 0.00015 34.8 0.0 21 129-149 85-105 (196)
11 smart00581 PSP proline-rich do 44.1 30 0.00065 25.0 3.1 32 120-157 10-43 (54)
12 cd02998 PDI_a_ERp38 PDIa famil 39.6 18 0.0004 26.1 1.5 47 91-137 34-81 (105)
13 PF13964 Kelch_6: Kelch motif 32.4 44 0.00094 21.9 2.3 20 40-59 3-22 (50)
14 smart00392 PROF Profilin. Bind 31.1 1.2E+02 0.0026 24.3 5.1 55 39-101 58-121 (129)
15 PF07646 Kelch_2: Kelch motif; 28.5 61 0.0013 21.3 2.5 17 41-57 4-20 (49)
16 PF04827 Plant_tran: Plant tra 27.1 42 0.00091 30.2 1.9 58 40-105 102-169 (205)
17 PF01288 HPPK: 7,8-dihydro-6-h 26.3 1.3E+02 0.0027 24.4 4.4 44 63-106 35-79 (127)
18 PF15643 Tox-PL-2: Papain fold 26.2 60 0.0013 26.2 2.4 45 89-140 1-45 (100)
19 PF04412 DUF521: Protein of un 26.0 61 0.0013 31.6 2.9 45 86-131 268-316 (400)
20 PRK13848 conjugal transfer pro 25.9 58 0.0013 26.1 2.3 25 83-107 39-63 (98)
21 PF12419 DUF3670: SNF2 Helicas 25.6 72 0.0016 26.2 2.9 27 75-101 71-97 (141)
22 PF07820 TraC: TraC-like prote 25.2 59 0.0013 25.9 2.2 25 83-107 38-62 (92)
23 cd01781 AF6_RA_repeat2 Ubiquit 24.6 1.5E+02 0.0032 23.8 4.4 51 63-114 2-54 (100)
24 PF01344 Kelch_1: Kelch motif; 23.6 66 0.0014 20.4 1.9 19 41-59 4-22 (47)
25 TIGR01498 folK 2-amino-4-hydro 23.3 1.7E+02 0.0037 23.8 4.7 45 62-106 34-79 (127)
26 TIGR03544 DivI1A_domain DivIVA 23.2 87 0.0019 19.8 2.4 18 87-104 17-34 (34)
27 PRK14092 2-amino-4-hydroxy-6-h 22.9 1.8E+02 0.0039 24.9 4.9 44 62-105 44-87 (163)
28 PF08672 APC2: Anaphase promot 22.3 73 0.0016 23.0 2.1 28 84-111 29-60 (60)
29 KOG3967 Uncharacterized conser 22.3 33 0.00071 31.9 0.3 58 47-117 14-71 (297)
30 COG0801 FolK 7,8-dihydro-6-hyd 21.4 2E+02 0.0043 24.8 4.9 56 62-117 38-105 (160)
31 cd03003 PDI_a_ERdj5_N PDIa fam 21.1 85 0.0018 23.0 2.3 44 91-136 34-77 (101)
32 PF07485 DUF1529: Domain of Un 20.5 96 0.0021 25.5 2.7 24 79-102 56-79 (123)
No 1
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7e-62 Score=424.43 Aligned_cols=169 Identities=63% Similarity=1.107 Sum_probs=158.3
Q ss_pred CCCcccEEEEEEeCCCCcchhHhhccceeeeeEEEeCeeEEecccCCCCCCcEEeCCCCCCCCceEEEEEeccccCCHHH
Q 026795 13 KTGSVPVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGPRE 92 (233)
Q Consensus 13 ~~~~~~V~LnVYDLs~~Ng~a~~lGlGIyHTGVeV~G~EY~FG~h~~~~sGI~~~~P~~~pg~~~resI~LG~T~lt~~e 92 (233)
.++.++|+|||||++++|+|++|+|+|||||||||||+||+||+|+++.+|||+++|+++|+++||++|.||.|++++++
T Consensus 10 ~~~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~~f~fr~sI~lG~Td~~~~~ 89 (214)
T KOG0324|consen 10 TNGRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCPEFTFRKSILLGSTDLTEDD 89 (214)
T ss_pred cccceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCCCCceeEEEEecCCCCCHHH
Confidence 33889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccccccccchhHHHHHHHHccCCCCChhhhhhhhhc--cccccCCCCCccccccccccc-ccc--
Q 026795 93 VRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLG--FLCNCVLPAGLNETKVRQVRS-DDR-- 167 (233)
Q Consensus 93 ~~~~l~~L~~~f~g~tY~LL~rNCNHFS~~lc~~L~Gk~IP~wInRlA~iG--~~~~CvlP~~l~~t~vg~~~~-~~~-- 167 (233)
|++||++|+++|+|++||||.||||||||++|++|+||+||+||||||++| ++|+|++|.....|++.+... .++
T Consensus 90 v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~winrLa~~~~~~~~~~~~p~~~~~t~~~~~~~~~~~~~ 169 (214)
T KOG0324|consen 90 VRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWVNRLARAGLCSLCNCLLPMLQNLTPVVLASSVVERFD 169 (214)
T ss_pred HHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHHHHHHHHhhhhHHhhcchhhhcCCccccccccccccC
Confidence 999999999999999999999999999999999999999999999999999 999999999999999886663 333
Q ss_pred cchhhhhccccccc
Q 026795 168 VTEGEKKKLRSHSS 181 (233)
Q Consensus 168 ~~~~~~~~~~s~~~ 181 (233)
.++.++++++|..+
T Consensus 170 ~~~~~~~~~~s~~s 183 (214)
T KOG0324|consen 170 EEENSKKKLASSGS 183 (214)
T ss_pred ccccccccccccCC
Confidence 34455888888877
No 2
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=100.00 E-value=7.9e-48 Score=319.52 Aligned_cols=137 Identities=51% Similarity=0.998 Sum_probs=105.1
Q ss_pred cEEEEEEeCCCCcc------hhHhhcc---ceeeeeEEEeCeeEEecccCCCCCCcEEeCCCC-CCCCceEEEEEecccc
Q 026795 18 PVYLNVYDLTPMNG------YAYWLGL---GIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQ-CPGFTFRKSILIGRTD 87 (233)
Q Consensus 18 ~V~LnVYDLs~~Ng------~a~~lGl---GIyHTGVeV~G~EY~FG~h~~~~sGI~~~~P~~-~pg~~~resI~LG~T~ 87 (233)
+|+||||||++.|. ...+||+ |||||||||+|+||+||+|+.+.+||++..|++ .++++|+++|+||+|.
T Consensus 2 ~V~L~vYDL~~~~~~~~~~~~~~~lG~~~~Gi~HtgV~v~G~Ey~fg~~~~~~~GI~~~~P~~~~~~~~~~~~i~lG~T~ 81 (151)
T PF05903_consen 2 PVYLNVYDLSPINNGMARQLSLMWLGLQIDGIYHTGVEVYGKEYAFGGHDDPDSGIFECPPGHTSPGGTPRESIELGETT 81 (151)
T ss_dssp EEEEEEEETT---TTHHHHHHHHHCSS-----EEEEEEETTEEEEEET-----TECEEESTT-STT--S-SEEEEEEEE-
T ss_pred eEEEEEEECccccchhHHHhhHhhhCCccCceEEEEEEEccEEEEecccccccCcceEccCcCCCCCcceEEEEeCCCcc
Confidence 79999999998765 5568998 999999999999999999998889999999998 7888999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCccccccccchhHHHHHHHHccCCCCChhhhhhhhhcc---ccccCCCCCc
Q 026795 88 LGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLGF---LCNCVLPAGL 154 (233)
Q Consensus 88 lt~~e~~~~l~~L~~~f~g~tY~LL~rNCNHFS~~lc~~L~Gk~IP~wInRlA~iG~---~~~CvlP~~l 154 (233)
+++++|+++|++|+++|++++||||.||||||||+||++|+|++||+||||+|+++. +..|++|..|
T Consensus 82 ~~~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g~~iP~~i~~~a~~~~~~p~~~~l~p~~~ 151 (151)
T PF05903_consen 82 LSEEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQFLTGKPIPSWINRLARIALSSPFGQMLLPMLW 151 (151)
T ss_dssp --HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS----HHHHTHHHHHHTSHHHHHHCC---
T ss_pred CCHHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHHHhCCCCCCHHHHhhhHHhcccchhhhhCcCCC
Confidence 999999999999999999999999999999999999999999999999999999986 5677777643
No 3
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=95.43 E-value=0.0073 Score=48.06 Aligned_cols=17 Identities=35% Similarity=0.710 Sum_probs=11.6
Q ss_pred CccccccccchhHHHHH
Q 026795 107 NTYHLITKNCNHFCNDV 123 (233)
Q Consensus 107 ~tY~LL~rNCNHFS~~l 123 (233)
..|||+.+||-||+...
T Consensus 103 ~~Y~l~~nNCEhFa~~c 119 (125)
T PF04970_consen 103 FEYNLLFNNCEHFATWC 119 (125)
T ss_dssp ESS---HHHHHHHHHHH
T ss_pred CccCCCcCCHHHHHHHH
Confidence 38999999999998743
No 4
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=95.12 E-value=0.084 Score=44.24 Aligned_cols=40 Identities=28% Similarity=0.542 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHhcCCCCccccccccchhHHHHHHHHcc
Q 026795 89 GPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLT 128 (233)
Q Consensus 89 t~~e~~~~l~~L~~~f~g~tY~LL~rNCNHFS~~lc~~L~ 128 (233)
+.++.++.|++-.++|....|+|+..||.+|.......|.
T Consensus 75 ~~~~wD~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~ 114 (136)
T PF05608_consen 75 GAESWDDAVQKASEEYKHRMYNLFTDNCHSFVANALNRMR 114 (136)
T ss_pred cHHHHHHHHHHHHHHHhhCceeeeccCcHHHHHHHHHhcc
Confidence 4566777888888999999999999999999888777764
No 5
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=73.05 E-value=5.3 Score=34.39 Aligned_cols=42 Identities=14% Similarity=0.329 Sum_probs=32.5
Q ss_pred ccCCHHHHHHHHHHHHhcCCCC-----------------------ccccccccchhHHHHHHHHcc
Q 026795 86 TDLGPREVRAFMEKLAEEYSGN-----------------------TYHLITKNCNHFCNDVCLKLT 128 (233)
Q Consensus 86 T~lt~~e~~~~l~~L~~~f~g~-----------------------tY~LL~rNCNHFS~~lc~~L~ 128 (233)
..+++++++++++.|++.|.-+ +|||+ ++|||-+++..+...
T Consensus 96 i~ls~~~y~~L~~~I~~sf~~~~~g~~~~i~~~y~~~d~Fy~A~G~Y~l~-~TCNtWta~~L~aaG 160 (173)
T PF09601_consen 96 IRLSEAQYRRLVAFIRASFQRDADGRPIPIGPGYGPDDAFYEAKGRYSLF-NTCNTWTARALKAAG 160 (173)
T ss_pred EEcCHHHHHHHHHHHHHHhccCCCCCeEEeccccCCCCeeEeeccceEee-cCcHHHHHHHHHHcC
Confidence 3789999999999998766654 45554 799999998777653
No 6
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=69.30 E-value=6.8 Score=33.05 Aligned_cols=55 Identities=22% Similarity=0.307 Sum_probs=42.0
Q ss_pred EEEeccccCCHHHHHHHHHHHHhcC----CCCccccccccchhHHHHHHHHccCCCCCh
Q 026795 80 SILIGRTDLGPREVRAFMEKLAEEY----SGNTYHLITKNCNHFCNDVCLKLTRKPIPR 134 (233)
Q Consensus 80 sI~LG~T~lt~~e~~~~l~~L~~~f----~g~tY~LL~rNCNHFS~~lc~~L~Gk~IP~ 134 (233)
.|..=...++++|.+.+++.|.+.- ++-.||.+..||=.-.-++.....++.++-
T Consensus 97 ~v~~y~LnLs~ee~~~l~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~~~~l~~ 155 (176)
T PF13387_consen 97 DVWEYPLNLSPEEKQRLFRHLWENANPENRPYRYNFFTDNCATRIRDLLDKARPGSLPL 155 (176)
T ss_pred cEEEEEeeCCHHHHHHHHHHHHHhccccccceeehhhhcchHHHHHHHHHHHcCCCeec
Confidence 3444456899999999888776433 455999999999999988888887765543
No 7
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=63.05 E-value=12 Score=35.82 Aligned_cols=83 Identities=27% Similarity=0.566 Sum_probs=47.7
Q ss_pred ceeeeeEEEeCeeEEecccCCC---CCCcEEeCCCCCCCCceEEEEEeccccCCHHHHHHHHHHHHhcCCCCcccccccc
Q 026795 39 GIYHSGVQVHGVEYGFGAHDHS---TTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKN 115 (233)
Q Consensus 39 GIyHTGVeV~G~EY~FG~h~~~---~sGI~~~~P~~~pg~~~resI~LG~T~lt~~e~~~~l~~L~~~f~g~tY~LL~rN 115 (233)
-+||-||-|.+ -+.+|-|.-+ +.|-+..+|=..+ =+.++.-+-.++.++++... .+.| -|..+.+|
T Consensus 21 ~~yHYaIYi~~-G~~lgvh~p~aai~~a~i~l~~ls~~----WRvvy~P~~~~~~~~L~~l~---ge~~---PY~a~~nN 89 (358)
T PF08405_consen 21 DIYHYAIYIGK-GLVLGVHSPGAAISIATIELEPLSLW----WRVVYTPRQRLSYDQLRKLE---GEKF---PYAAFTNN 89 (358)
T ss_pred eeEEEEEEecC-CeEEeecCcchhceeeeEEEeecccc----cccccCCCCCCCHHHHHHhc---CCCC---Cchhhccc
Confidence 48999999843 5667766432 2344555554332 11222223345555544333 2455 48999999
Q ss_pred chhHHHHHHHHccCCCCCh-hhhh
Q 026795 116 CNHFCNDVCLKLTRKPIPR-WVNR 138 (233)
Q Consensus 116 CNHFS~~lc~~L~Gk~IP~-wInR 138 (233)
|=||| |+-|. +++ |++|
T Consensus 90 Cy~fc---c~vl~---L~D~wl~r 107 (358)
T PF08405_consen 90 CYTFC---CWVLG---LNDSWLKR 107 (358)
T ss_pred hHHHh---HhhcC---CChHHHhh
Confidence 99999 66443 333 6666
No 8
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=49.22 E-value=25 Score=24.81 Aligned_cols=35 Identities=29% Similarity=0.657 Sum_probs=26.9
Q ss_pred HHHHHHHHcc--CCCCChhhhhhhhhccccccCCCCCcccccc
Q 026795 119 FCNDVCLKLT--RKPIPRWVNRLARLGFLCNCVLPAGLNETKV 159 (233)
Q Consensus 119 FS~~lc~~L~--Gk~IP~wInRlA~iG~~~~CvlP~~l~~t~v 159 (233)
.|+++-++|. ...+|.||.++.++| .|..+-...+
T Consensus 5 lS~~LR~ALg~~~~~~PPwl~~M~~~G------~PP~y~~~ki 41 (48)
T PF04046_consen 5 LSDELREALGMQENDPPPWLYRMRRLG------YPPGYPDLKI 41 (48)
T ss_pred cCHHHHHHcCCCCCCCChHHHHHHhcC------CCCCCccccc
Confidence 4677878774 467999999999999 8887744433
No 9
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.01 E-value=56 Score=28.69 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=39.1
Q ss_pred CceEEEEEeccccC---CHHHHHHHHHHHHhcCCCCccccccccchhHHHHHHHHcc
Q 026795 75 FTFRKSILIGRTDL---GPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLT 128 (233)
Q Consensus 75 ~~~resI~LG~T~l---t~~e~~~~l~~L~~~f~g~tY~LL~rNCNHFS~~lc~~L~ 128 (233)
+.+-+-+.|+.+.. .+...++.+.+-.++|...+|||+.-||.-|-.-...+|.
T Consensus 74 G~paRY~ql~p~~~~~~g~~~wD~Av~~as~~y~hr~hNi~cdNCHShVA~aLn~mr 130 (182)
T KOG3150|consen 74 GPPARYIQLDPEKVCGPGARTWDNAVSKASREYKHRTHNIFCDNCHSHVANALNRMR 130 (182)
T ss_pred CCcceeEEeChhheeCCCCchHHHHHHHHHHHhhhcccceeeccHHHHHHHHHHHhh
Confidence 34444555554422 4567788899999999999999999999988765555543
No 10
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=46.03 E-value=6.7 Score=34.83 Aligned_cols=21 Identities=43% Similarity=0.903 Sum_probs=0.0
Q ss_pred CCCCChhhhhhhhhccccccC
Q 026795 129 RKPIPRWVNRLARLGFLCNCV 149 (233)
Q Consensus 129 Gk~IP~wInRlA~iG~~~~Cv 149 (233)
||+||-|+-.|.-++..+.|=
T Consensus 85 GkPIPyWLYKLhGL~~ey~CE 105 (196)
T PF11931_consen 85 GKPIPYWLYKLHGLGVEYKCE 105 (196)
T ss_dssp ---------------------
T ss_pred CCcccHHHHHHhCCCCeeeeE
Confidence 799999999999999888883
No 11
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=44.07 E-value=30 Score=24.96 Aligned_cols=32 Identities=28% Similarity=0.581 Sum_probs=25.3
Q ss_pred HHHHHHHcc--CCCCChhhhhhhhhccccccCCCCCcccc
Q 026795 120 CNDVCLKLT--RKPIPRWVNRLARLGFLCNCVLPAGLNET 157 (233)
Q Consensus 120 S~~lc~~L~--Gk~IP~wInRlA~iG~~~~CvlP~~l~~t 157 (233)
|+++-++|. -..+|-|+.++.++| .|..+..-
T Consensus 10 S~~LR~ALG~~~~~pPPWl~~Mq~~G------~PPsYp~l 43 (54)
T smart00581 10 SDELREALGLPPGQPPPWLYRMRRLG------YPPGYPRL 43 (54)
T ss_pred CHHHHHHcCCCCCCCChHHHHHHHHC------CCCCCccc
Confidence 678888875 357999999999999 77776443
No 12
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=39.56 E-value=18 Score=26.08 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCC-CccccccccchhHHHHHHHHccCCCCChhhh
Q 026795 91 REVRAFMEKLAEEYSG-NTYHLITKNCNHFCNDVCLKLTRKPIPRWVN 137 (233)
Q Consensus 91 ~e~~~~l~~L~~~f~g-~tY~LL~rNCNHFS~~lc~~L~Gk~IP~wIn 137 (233)
.++...++++.+++.. ..+.++.=||+....++|+.+....+|.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 34 KNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred HhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 4556677888877763 4688889999997678999998899998654
No 13
>PF13964 Kelch_6: Kelch motif
Probab=32.40 E-value=44 Score=21.88 Aligned_cols=20 Identities=45% Similarity=0.541 Sum_probs=16.9
Q ss_pred eeeeeEEEeCeeEEecccCC
Q 026795 40 IYHSGVQVHGVEYGFGAHDH 59 (233)
Q Consensus 40 IyHTGVeV~G~EY~FG~h~~ 59 (233)
..|+.|.+.|+=|.|||...
T Consensus 3 ~~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred ccCEEEEECCEEEEECCCCC
Confidence 36899999999999998654
No 14
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=31.05 E-value=1.2e+02 Score=24.31 Aligned_cols=55 Identities=27% Similarity=0.468 Sum_probs=32.0
Q ss_pred ceeeeeEEEeCeeEEecccCC-------CCCCcEEeCCCCCCCCceEEEEEeccccC--CHHHHHHHHHHHH
Q 026795 39 GIYHSGVQVHGVEYGFGAHDH-------STTGIFEVEPKQCPGFTFRKSILIGRTDL--GPREVRAFMEKLA 101 (233)
Q Consensus 39 GIyHTGVeV~G~EY~FG~h~~-------~~sGI~~~~P~~~pg~~~resI~LG~T~l--t~~e~~~~l~~L~ 101 (233)
+.+.+||.+.|..|.+=..+. +..||+....++ .|.+|..+- .+.+....+++|+
T Consensus 58 ~~~~~Gi~l~G~Ky~~~~~d~~~i~~kk~~~Gv~i~kT~~--------aivI~~y~e~~~~g~~~~~v~~la 121 (129)
T smart00392 58 AVFSNGLTLGGQKYMVIRADDRSIMGKKGAGGVVIVKTKQ--------ALIIGMYKEGVQPGQANKTVEKLA 121 (129)
T ss_pred hhccCCeEECCeEEEEEEecCcEEEeecCCceEEEEECCC--------EEEEEECCCCCChHHHHHHHHHHH
Confidence 688999999999999954331 233454444333 566665543 3344444444443
No 15
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=28.49 E-value=61 Score=21.25 Aligned_cols=17 Identities=41% Similarity=0.538 Sum_probs=15.5
Q ss_pred eeeeEEEeCeeEEeccc
Q 026795 41 YHSGVQVHGVEYGFGAH 57 (233)
Q Consensus 41 yHTGVeV~G~EY~FG~h 57 (233)
-|+.+++.++=|-|||.
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 48999999999999987
No 16
>PF04827 Plant_tran: Plant transposon protein; InterPro: IPR006912 This entry represents a putative Harbinger transposase-derived nuclease, which is thought to have nuclease activity. However it does not have transposase activity [, ]. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=27.08 E-value=42 Score=30.19 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=37.9
Q ss_pred eeeeeEEEeCeeEEecccCCCCCCcEEeCCCCCCCCceEEEEEecccc----------CCHHHHHHHHHHHHhcCC
Q 026795 40 IYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTD----------LGPREVRAFMEKLAEEYS 105 (233)
Q Consensus 40 IyHTGVeV~G~EY~FG~h~~~~sGI~~~~P~~~pg~~~resI~LG~T~----------lt~~e~~~~l~~L~~~f~ 105 (233)
.-.....|+|.||..|+. -..||+ | +-.+|.++|.+-... --+++|++...-|+.+|.
T Consensus 102 ap~v~f~VNg~~Y~~gYY--LaDGiY---P---~watfvktI~~p~~~k~k~fa~~QE~~RKDVErAFGVLQaRfa 169 (205)
T PF04827_consen 102 APRVQFTVNGHEYNMGYY--LADGIY---P---EWATFVKTISLPQGEKRKLFAKHQESARKDVERAFGVLQARFA 169 (205)
T ss_pred CCceEEEecCeeccccee--eccCcC---c---chHhHhhhcchhhchhhHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 334457899999999873 346886 2 235677777765542 234667777777776663
No 17
>PF01288 HPPK: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); InterPro: IPR000550 All organisms require reduced folate cofactors for the synthesis of a variety of metabolites. Most microorganisms must synthesise folate de novo because they lack the active transport system of higher vertebrate cells which allows these organisms to use dietary folates. Enzymes involved in folate biosynthesis are therefore targets for a variety of antimicrobial agents such as trimethoprim or sulphonamides. 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (2.7.6.3 from EC) (HPPK) catalyses the attachment of pyrophosphate to 6-hydroxymethyl-7,8-dihydropterin to form 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate. This is the first step in a three-step pathway leading to 7,8 dihydrofolate. Bacterial HPPK (gene folK or sulD) [] is a protein of 160 to 270 amino acids. In the lower eukaryote Pneumocystis carinii, HPPK is the central domain of a multifunctional folate synthesis enzyme (gene fas) [].; GO: 0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 2QX0_B 1RU1_B 2F65_A 1RU2_A 1EQ0_A 3ILJ_A 3HSJ_A 3HD1_A 1TMM_B 1RB0_A ....
Probab=26.28 E-value=1.3e+02 Score=24.39 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=31.6
Q ss_pred CcEEeCCCCCCCC-ceEEEEEeccccCCHHHHHHHHHHHHhcCCC
Q 026795 63 GIFEVEPKQCPGF-TFRKSILIGRTDLGPREVRAFMEKLAEEYSG 106 (233)
Q Consensus 63 GI~~~~P~~~pg~-~~resI~LG~T~lt~~e~~~~l~~L~~~f~g 106 (233)
-+++++|-...+- .|--.+..+.|.++++++.+.+.++..++--
T Consensus 35 ~~y~t~p~g~~~~~~F~N~v~~~~t~l~~~~ll~~L~~IE~~~GR 79 (127)
T PF01288_consen 35 SIYETEPVGFESQPDFLNAVVVLETSLSPEELLDLLKQIERRLGR 79 (127)
T ss_dssp EEEEE--SSSSSS-CEEEEEEEEEESS-HHHHHHHHHHHHHHTTS
T ss_pred CCEEECCccCCCCcCeeeeeeeecCCCCHHHHHHHHHHHHHHhCC
Confidence 5777777654333 4888999999999999999999988765543
No 18
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=26.20 E-value=60 Score=26.19 Aligned_cols=45 Identities=27% Similarity=0.376 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHhcCCCCccccccccchhHHHHHHHHccCCCCChhhhhhh
Q 026795 89 GPREVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLA 140 (233)
Q Consensus 89 t~~e~~~~l~~L~~~f~g~tY~LL~rNCNHFS~~lc~~L~Gk~IP~wInRlA 140 (233)
++++++..+..+..+|. .--|--|++++.++|.-++||.-+-+|-
T Consensus 1 ~~~~~~Q~I~~I~~~f~-------~~qC~~cA~Al~~~L~~~gI~Gk~i~l~ 45 (100)
T PF15643_consen 1 NPAEVRQQIGKIASRFK-------IFQCVECASALKQFLKQAGIPGKIIRLY 45 (100)
T ss_pred CHHHHHHHHHHhhcccC-------ceehHHHHHHHHHHHHHCCCCceEEEEE
Confidence 35788888888887774 3459999999999999999999888853
No 19
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=26.01 E-value=61 Score=31.62 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=36.4
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCccccccccchhHHH----HHHHHccCCC
Q 026795 86 TDLGPREVRAFMEKLAEEYSGNTYHLITKNCNHFCN----DVCLKLTRKP 131 (233)
Q Consensus 86 T~lt~~e~~~~l~~L~~~f~g~tY~LL~rNCNHFS~----~lc~~L~Gk~ 131 (233)
..++.+|+++..++|. .-..+.-|++.=-|+|||- +++++|-|++
T Consensus 268 i~i~~~dl~~~~~~l~-~~~~~~~D~V~lGcPH~S~~El~~ia~ll~gr~ 316 (400)
T PF04412_consen 268 ITITDADLEEVYEELN-TAGDEKVDLVALGCPHLSLEELREIAELLEGRK 316 (400)
T ss_pred EEeCHHHHHHHHHHhc-cCCCCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4677889999999887 6677889999999999984 5666777765
No 20
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=25.95 E-value=58 Score=26.12 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=22.7
Q ss_pred eccccCCHHHHHHHHHHHHhcCCCC
Q 026795 83 IGRTDLGPREVRAFMEKLAEEYSGN 107 (233)
Q Consensus 83 LG~T~lt~~e~~~~l~~L~~~f~g~ 107 (233)
||..+++++|+...++++..+|+..
T Consensus 39 LgeieI~d~eL~~aFeeiAaRFR~g 63 (98)
T PRK13848 39 LGEIEIEEAELQAAFEELAKRFRGG 63 (98)
T ss_pred ccccccCHHHHHHHHHHHHHHHhcC
Confidence 6889999999999999999999874
No 21
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=25.55 E-value=72 Score=26.18 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=23.7
Q ss_pred CceEEEEEeccccCCHHHHHHHHHHHH
Q 026795 75 FTFRKSILIGRTDLGPREVRAFMEKLA 101 (233)
Q Consensus 75 ~~~resI~LG~T~lt~~e~~~~l~~L~ 101 (233)
..|+=.+.||...+|++||+++++.=+
T Consensus 71 ~~f~W~lalGd~~Ls~eEf~~L~~~~~ 97 (141)
T PF12419_consen 71 LDFDWELALGDEELSEEEFEQLVEQKR 97 (141)
T ss_pred hcceEEEEECCEECCHHHHHHHHHcCC
Confidence 578889999999999999999998643
No 22
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=25.17 E-value=59 Score=25.87 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=22.8
Q ss_pred eccccCCHHHHHHHHHHHHhcCCCC
Q 026795 83 IGRTDLGPREVRAFMEKLAEEYSGN 107 (233)
Q Consensus 83 LG~T~lt~~e~~~~l~~L~~~f~g~ 107 (233)
||..+++.+|+..+++++..+|+..
T Consensus 38 L~eieI~d~eL~~~FeeIa~RFrk~ 62 (92)
T PF07820_consen 38 LGEIEISDAELQAAFEEIAARFRKG 62 (92)
T ss_pred cccccCCHHHHHHHHHHHHHHHhcc
Confidence 6888999999999999999999875
No 23
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=24.63 E-value=1.5e+02 Score=23.84 Aligned_cols=51 Identities=25% Similarity=0.307 Sum_probs=34.1
Q ss_pred CcEEeCCCCC-CCCceEEEEEeccccCCHHHHHHHHHHHH-hcCCCCccccccc
Q 026795 63 GIFEVEPKQC-PGFTFRKSILIGRTDLGPREVRAFMEKLA-EEYSGNTYHLITK 114 (233)
Q Consensus 63 GI~~~~P~~~-pg~~~resI~LG~T~lt~~e~~~~l~~L~-~~f~g~tY~LL~r 114 (233)
|+..+-|+.- |+. +.++|.+-.++.+++-|.+.|++.. +.-.++.|.|..-
T Consensus 2 G~LKIYg~~L~~~~-~YKSIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV 54 (100)
T cd01781 2 GTLKIYGGSLVPTR-PYKTILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEV 54 (100)
T ss_pred CeEEEcCCcccCCC-CeEEEEecCCccHHHHHHHHHHHhCCCccCccceEEEEE
Confidence 3444444442 443 4459999999999999999999765 4445666666554
No 24
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=23.64 E-value=66 Score=20.37 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=16.3
Q ss_pred eeeeEEEeCeeEEecccCC
Q 026795 41 YHSGVQVHGVEYGFGAHDH 59 (233)
Q Consensus 41 yHTGVeV~G~EY~FG~h~~ 59 (233)
.|+.+.++|+=|.|||...
T Consensus 4 ~~~~~~~~~~iyv~GG~~~ 22 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDG 22 (47)
T ss_dssp SEEEEEETTEEEEEEEBES
T ss_pred cCEEEEECCEEEEEeeecc
Confidence 6889999999999998654
No 25
>TIGR01498 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis.
Probab=23.32 E-value=1.7e+02 Score=23.80 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=33.7
Q ss_pred CCcEEeCCCCCC-CCceEEEEEeccccCCHHHHHHHHHHHHhcCCC
Q 026795 62 TGIFEVEPKQCP-GFTFRKSILIGRTDLGPREVRAFMEKLAEEYSG 106 (233)
Q Consensus 62 sGI~~~~P~~~p-g~~~resI~LG~T~lt~~e~~~~l~~L~~~f~g 106 (233)
+-+++++|-..+ .-.|--.+..+.|.+++.++.+.+.++..++--
T Consensus 34 S~~y~T~p~g~~~q~~FlN~v~~~~T~l~p~~Ll~~l~~IE~~~GR 79 (127)
T TIGR01498 34 SSIYETPPWGFTDQPDFLNAVVEVETTLAPRELLALLQAIEAELGR 79 (127)
T ss_pred ccCEEEcCCCCCCCchhheEEEEEEeCCCHHHHHHHHHHHHHHhCC
Confidence 357777775433 344767888899999999999999988766554
No 26
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=23.21 E-value=87 Score=19.83 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=15.3
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 026795 87 DLGPREVRAFMEKLAEEY 104 (233)
Q Consensus 87 ~lt~~e~~~~l~~L~~~f 104 (233)
...++||.+||+++.++|
T Consensus 17 GY~~~eVD~fLd~v~~~~ 34 (34)
T TIGR03544 17 GYDAAEVDAFLDRVADDL 34 (34)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 567899999999998764
No 27
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=22.86 E-value=1.8e+02 Score=24.87 Aligned_cols=44 Identities=16% Similarity=0.356 Sum_probs=33.8
Q ss_pred CCcEEeCCCCCCCCceEEEEEeccccCCHHHHHHHHHHHHhcCC
Q 026795 62 TGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYS 105 (233)
Q Consensus 62 sGI~~~~P~~~pg~~~resI~LG~T~lt~~e~~~~l~~L~~~f~ 105 (233)
+-+++++|-..+.-.|--.+..+.|.+++.++.+.+..+..++-
T Consensus 44 S~~y~T~P~g~~q~dFlN~vv~~~T~l~p~~Ll~~L~~IE~~~G 87 (163)
T PRK14092 44 SRLYRTAPVDAQGPDFVNAVAALDTTLAPLDLLDLLQALEQRHG 87 (163)
T ss_pred CCCEEeCCCCCCCCchhEEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 35777777654444577888999999999999999988875443
No 28
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=22.33 E-value=73 Score=22.99 Aligned_cols=28 Identities=39% Similarity=0.782 Sum_probs=17.7
Q ss_pred ccccCCHHHHHHHHHHHHh----cCCCCcccc
Q 026795 84 GRTDLGPREVRAFMEKLAE----EYSGNTYHL 111 (233)
Q Consensus 84 G~T~lt~~e~~~~l~~L~~----~f~g~tY~L 111 (233)
+..+.+.+|+++||+++-+ ++.+..|.|
T Consensus 29 ~~~~~s~~eL~~fL~~lv~e~~L~~~~G~YkL 60 (60)
T PF08672_consen 29 GGYDISLEELQEFLDRLVEEGKLECSGGSYKL 60 (60)
T ss_dssp --TT--HHHHHHHHHHHHHTTSEE--TTEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCcEEecCCEEeC
Confidence 4567889999999999863 677777754
No 29
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.28 E-value=33 Score=31.87 Aligned_cols=58 Identities=28% Similarity=0.486 Sum_probs=32.6
Q ss_pred EeCeeEEecccCCCCCCcEEeCCCCCCCCceEEEEEeccccCCHHHHHHHHHHHHhcCCCCccccccccch
Q 026795 47 VHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGPREVRAFMEKLAEEYSGNTYHLITKNCN 117 (233)
Q Consensus 47 V~G~EY~FG~h~~~~sGI~~~~P~~~pg~~~resI~LG~T~lt~~e~~~~l~~L~~~f~g~tY~LL~rNCN 117 (233)
.-|-||+|.+ -|+....-..-| |.|.-+-++ .+=+.-.+.|.+.-+-.-|.||.+|||
T Consensus 14 L~~fgYaFde-----kGvLr~iktgeP-F~fn~~eD~-------~enqk~ye~Lge~i~~~VYeLLEk~c~ 71 (297)
T KOG3967|consen 14 LEGFGYAFDE-----KGVLRHIKTGEP-FVFNYREDL-------HENQKRYEALGEIITKYVYELLEKDCN 71 (297)
T ss_pred HhhcceeecC-----cceeeeccCCCC-eEEecHHHH-------HHhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4577899986 477765532222 444322121 111223344555555567999999997
No 30
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=21.43 E-value=2e+02 Score=24.82 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=42.7
Q ss_pred CCcEEeCCCC-CCCCceEEEEEeccccCCHHHHHHHHHHHH--------hcCCCCccc---cccccch
Q 026795 62 TGIFEVEPKQ-CPGFTFRKSILIGRTDLGPREVRAFMEKLA--------EEYSGNTYH---LITKNCN 117 (233)
Q Consensus 62 sGI~~~~P~~-~pg~~~resI~LG~T~lt~~e~~~~l~~L~--------~~f~g~tY~---LL~rNCN 117 (233)
|.|++++|=. .....|--.+...+|.+++.|+-+.+.++. .+|.+-+-| |+..+|.
T Consensus 38 S~~y~t~p~G~~~Q~~FlN~v~~v~T~L~p~eLL~~l~~iE~~~gR~R~~rwgPRtlDlDIllygd~~ 105 (160)
T COG0801 38 SPIYETPPVGYEDQPDFLNAVVEVETTLSPRELLARLQAIERRLGRVRSERWGPRTLDLDILLYGDEV 105 (160)
T ss_pred ccceecCCCCCCCCcchheEEEEEeccCCHHHHHHHHHHHHHHcCccccccCCCcceeeEEEEEccee
Confidence 5788888743 235667788999999999999988887764 478888777 5666666
No 31
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=21.11 E-value=85 Score=23.04 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCCccccccccchhHHHHHHHHccCCCCChhh
Q 026795 91 REVRAFMEKLAEEYSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWV 136 (233)
Q Consensus 91 ~e~~~~l~~L~~~f~g~tY~LL~rNCNHFS~~lc~~L~Gk~IP~wI 136 (233)
.++...+++++++|.+. ..+..=||... .++|+.+..+.+|..+
T Consensus 34 ~~~~p~~~~~a~~~~~~-~~~~~vd~~~~-~~~~~~~~v~~~Pt~~ 77 (101)
T cd03003 34 HDLAPTWREFAKEMDGV-IRIGAVNCGDD-RMLCRSQGVNSYPSLY 77 (101)
T ss_pred HHhHHHHHHHHHHhcCc-eEEEEEeCCcc-HHHHHHcCCCccCEEE
Confidence 45667778888888754 77889999986 5689999889999853
No 32
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=20.47 E-value=96 Score=25.50 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.0
Q ss_pred EEEEeccccCCHHHHHHHHHHHHh
Q 026795 79 KSILIGRTDLGPREVRAFMEKLAE 102 (233)
Q Consensus 79 esI~LG~T~lt~~e~~~~l~~L~~ 102 (233)
+...||++-+.++|+..+++.|++
T Consensus 56 ~A~~~Gd~vll~~EV~pvi~aL~~ 79 (123)
T PF07485_consen 56 KAMVMGDFVLLEDEVNPVISALRK 79 (123)
T ss_pred cEEEeecEEecHHHHHHHHHHHHH
Confidence 478899999999999999999985
Done!