Query 026795
Match_columns 233
No_of_seqs 159 out of 458
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 22:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wp7_A PPPDE peptidase domain- 100.0 1.2E-50 4.2E-55 342.8 12.2 133 15-163 5-144 (168)
2 2lkt_A Retinoic acid receptor 93.6 0.023 8E-07 44.2 1.5 34 87-123 86-120 (125)
3 4dpz_X HRAS-like suppressor 2; 93.2 0.04 1.4E-06 44.7 2.4 19 107-125 104-122 (137)
4 4dot_A Group XVI phospholipase 93.0 0.051 1.7E-06 44.3 2.7 29 107-138 104-132 (140)
5 1rpq_W Peptide E131; receptor- 28.0 8 0.00027 22.8 -0.8 14 115-128 2-15 (26)
6 1f9y_A HPPK, protein (6-hydrox 23.1 1.5E+02 0.0053 24.0 5.7 41 62-102 37-78 (158)
7 2wj8_A Nucleoprotein; RNA bind 22.6 55 0.0019 30.3 3.1 43 81-125 270-326 (391)
8 3qbc_A 2-amino-4-hydroxy-6-hyd 20.8 1.5E+02 0.0052 24.2 5.2 49 62-110 41-98 (161)
9 3imo_A Integron cassette prote 19.2 3.1E+02 0.01 22.1 6.5 70 11-99 63-132 (133)
10 1mgt_A MGMT, protein (O6-methy 17.1 4E+02 0.014 21.9 7.1 69 43-130 5-74 (174)
No 1
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=100.00 E-value=1.2e-50 Score=342.82 Aligned_cols=133 Identities=30% Similarity=0.480 Sum_probs=119.1
Q ss_pred CcccEEEEEEeCCCC-cch--hHhhcc---ceeeeeEEEeCeeEEecccCCCCCCcEEeCCCCCCCCceEEEEEeccccC
Q 026795 15 GSVPVYLNVYDLTPM-NGY--AYWLGL---GIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDL 88 (233)
Q Consensus 15 ~~~~V~LnVYDLs~~-Ng~--a~~lGl---GIyHTGVeV~G~EY~FG~h~~~~sGI~~~~P~~~pg~~~resI~LG~T~l 88 (233)
++.+|+||||||++. |.. ..|+|+ |||||||||||+||+||+ +||+++.|+.++.++||++|+||.|++
T Consensus 5 ~~~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~~~g~~resi~lG~T~~ 79 (168)
T 2wp7_A 5 NLYPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGTLLGPPDSVVDVGNTEV 79 (168)
T ss_dssp CCEEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCSTTCSCSEEEEEEEECC
T ss_pred CCcEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcCCCCCeEEEEECCCccC
Confidence 348999999999983 222 247897 999999999999999996 599999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc-CCCCccccccccchhHHHHHHHHccCCCCChhhhhhhhhccccccCCCCCcccccccccc
Q 026795 89 GPREVRAFMEKLAEE-YSGNTYHLITKNCNHFCNDVCLKLTRKPIPRWVNRLARLGFLCNCVLPAGLNETKVRQVR 163 (233)
Q Consensus 89 t~~e~~~~l~~L~~~-f~g~tY~LL~rNCNHFS~~lc~~L~Gk~IP~wInRlA~iG~~~~CvlP~~l~~t~vg~~~ 163 (233)
++++|+++|++|+++ |++++||||.|||||||||+|++|+||+||+||||||+ .+++||+||++
T Consensus 80 ~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~wInrl~~-----------~vl~tp~G~~l 144 (168)
T 2wp7_A 80 TEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPS-----------EVLSTPFGQAL 144 (168)
T ss_dssp CHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHHHHTHHH-----------HHHTSHHHHHH
T ss_pred CHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHHHHHHHH-----------HHhcCcHHHHH
Confidence 999999999999998 99999999999999999999999999999999999766 44555555555
No 2
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=93.58 E-value=0.023 Score=44.19 Aligned_cols=34 Identities=18% Similarity=0.490 Sum_probs=21.1
Q ss_pred cCCHHHH-HHHHHHHHhcCCCCccccccccchhHHHHH
Q 026795 87 DLGPREV-RAFMEKLAEEYSGNTYHLITKNCNHFCNDV 123 (233)
Q Consensus 87 ~lt~~e~-~~~l~~L~~~f~g~tY~LL~rNCNHFS~~l 123 (233)
.++.+++ ++....|.+++ .||||.+||=||+..+
T Consensus 86 p~~~~~iv~rA~~~lg~~~---~Y~l~~nNCEHFa~~c 120 (125)
T 2lkt_A 86 PRPVEVIISSAKEMVGQKM---KYSIVSRNCEHFVTQL 120 (125)
T ss_dssp CCCHHHHHHHHHHHTTCEE---CSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCC---CcCCCccCHHHHHhhh
Confidence 3444443 23333333333 6999999999998643
No 3
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=93.17 E-value=0.04 Score=44.74 Aligned_cols=19 Identities=37% Similarity=0.756 Sum_probs=11.2
Q ss_pred CccccccccchhHHHHHHH
Q 026795 107 NTYHLITKNCNHFCNDVCL 125 (233)
Q Consensus 107 ~tY~LL~rNCNHFS~~lc~ 125 (233)
..|+||.+||.||+..+..
T Consensus 104 ~~Y~ll~nNCEHFvt~cry 122 (137)
T 4dpz_X 104 LPYSLTSDNCEHFVNHLRY 122 (137)
T ss_dssp EC-----CHHHHHHHHHHH
T ss_pred cccCcCccChHHHHHHHhc
Confidence 4899999999999986543
No 4
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=93.00 E-value=0.051 Score=44.34 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=18.1
Q ss_pred CccccccccchhHHHHHHHHccCCCCChhhhh
Q 026795 107 NTYHLITKNCNHFCNDVCLKLTRKPIPRWVNR 138 (233)
Q Consensus 107 ~tY~LL~rNCNHFS~~lc~~L~Gk~IP~wInR 138 (233)
..|+||.+||-||+..+.. |+..-.-|.+
T Consensus 104 ~~Y~ll~nNCEHFvt~cr~---G~~~S~Qv~~ 132 (140)
T 4dot_A 104 VLYKLTSENCEHFVNELRY---GVARSDQVRD 132 (140)
T ss_dssp CSSCCCHHHHHHHHHHHHH---CCC-------
T ss_pred ccccccccChHHHHHHHhc---CCcccchhhh
Confidence 5999999999999986544 6554433333
No 5
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=27.97 E-value=8 Score=22.84 Aligned_cols=14 Identities=36% Similarity=0.961 Sum_probs=10.1
Q ss_pred cchhHHHHHHHHcc
Q 026795 115 NCNHFCNDVCLKLT 128 (233)
Q Consensus 115 NCNHFS~~lc~~L~ 128 (233)
.|.|||-++-..|+
T Consensus 2 qcphfcyeldyelc 15 (26)
T 1rpq_W 2 QCPHFCYELDYELC 15 (26)
T ss_dssp CCCTHHHHSSSCCS
T ss_pred CCCeeeeecCcccC
Confidence 59999987755543
No 6
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...
Probab=23.06 E-value=1.5e+02 Score=23.97 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=31.8
Q ss_pred CCcEEeCCCCC-CCCceEEEEEeccccCCHHHHHHHHHHHHh
Q 026795 62 TGIFEVEPKQC-PGFTFRKSILIGRTDLGPREVRAFMEKLAE 102 (233)
Q Consensus 62 sGI~~~~P~~~-pg~~~resI~LG~T~lt~~e~~~~l~~L~~ 102 (233)
+.+++++|-.. ..-.|.-.+....|.+++.++-+.+.++..
T Consensus 37 S~~y~T~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE~ 78 (158)
T 1f9y_A 37 SSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIEL 78 (158)
T ss_dssp CCCEEECCSSCSSSCCEEEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred CCeEEeCCCCCCCCCCceEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 46888888432 345687788888999999999999888764
No 7
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=22.55 E-value=55 Score=30.31 Aligned_cols=43 Identities=28% Similarity=0.505 Sum_probs=25.3
Q ss_pred EEeccccCCH-----HHHHHHHHHHHhcCCCCcccccc---------ccchhHHHHHHH
Q 026795 81 ILIGRTDLGP-----REVRAFMEKLAEEYSGNTYHLIT---------KNCNHFCNDVCL 125 (233)
Q Consensus 81 I~LG~T~lt~-----~e~~~~l~~L~~~f~g~tY~LL~---------rNCNHFS~~lc~ 125 (233)
|-||...+.. .||.+++++|..+ ..-|||.. -||+||+.-+..
T Consensus 270 imlgh~svqae~~qv~evy~~~~k~G~E--sG~~Hlr~nPKA~LLSLtncPnFaSVVLG 326 (391)
T 2wj8_A 270 IMLGHASVQAEMEQVVEVYEYAQKLGGE--AGFYHILNNPKASLLSLTQFPHFSSVVLG 326 (391)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHGGG--GGGTTTTTCGGGGGGCSTTCHHHHHHHHH
T ss_pred eeeehhHHHHHHHHHHHHHHHHHHhCcc--chhhhhhhCCcchheecccCCCchhheec
Confidence 4566654421 2345566666543 34577765 499999976543
No 8
>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}
Probab=20.76 E-value=1.5e+02 Score=24.18 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=35.9
Q ss_pred CCcEEeCCCCC-CCCceEEEEEeccccCCHHHHHHHHHHHHh--------cCCCCccc
Q 026795 62 TGIFEVEPKQC-PGFTFRKSILIGRTDLGPREVRAFMEKLAE--------EYSGNTYH 110 (233)
Q Consensus 62 sGI~~~~P~~~-pg~~~resI~LG~T~lt~~e~~~~l~~L~~--------~f~g~tY~ 110 (233)
+.+++++|-.. ..-.|.-.+....|.+++.++-+.+.++.. +|.+-+-|
T Consensus 41 S~~yeT~P~G~~~q~~FlN~v~~~~T~l~p~~LL~~l~~IE~~~GR~R~~r~gpRtlD 98 (161)
T 3qbc_A 41 SPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERWGPRTLD 98 (161)
T ss_dssp CCCEEECCSSSSSSCCEEEEEEEEEECSCHHHHHHHHHHHHHHHHSCSCGGGCCCCCE
T ss_pred CCEEEECCCCCCCCCcceEEEEEEEeCCCHHHHHHHHHHHHHHhCCCCCCcCCCceEe
Confidence 46888888543 345688888888999999999998887752 56555544
No 9
>3imo_A Integron cassette protein; novel, integron protein, argentinean O139 strain, unknown function; 1.80A {Vibrio cholerae O139}
Probab=19.19 E-value=3.1e+02 Score=22.07 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=43.4
Q ss_pred CCCCCcccEEEEEEeCCCCcchhHhhccceeeeeEEEeCeeEEecccCCCCCCcEEeCCCCCCCCceEEEEEeccccCCH
Q 026795 11 KKKTGSVPVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLGP 90 (233)
Q Consensus 11 ~~~~~~~~V~LnVYDLs~~Ng~a~~lGlGIyHTGVeV~G~EY~FG~h~~~~sGI~~~~P~~~pg~~~resI~LG~T~lt~ 90 (233)
|++|+ +|.+..||=.-.| =.| |++.|++|+|-+.- .+|-.+..-+...|..+.. .+. .-++
T Consensus 63 kk~~d--~Iev~~~dG~~an--------vlW---vti~gkRyaFsYNh--~t~~IElR~gs~~Ga~l~S---F~N-~T~~ 123 (133)
T 3imo_A 63 RKDDT--NIKVMAHGADTKN--------VLW---VTINGERYAFSYNH--SSEKIEMRKGNIQGNTIHE---FDN-STPL 123 (133)
T ss_dssp HCCSS--CCEEEESSSTTSE--------EEE---EEETTEEEEEEEET--TTTEEEEEESSTTSCCSEE---ECT-TSCH
T ss_pred ecCCC--cEEEEecCCCccc--------eEE---EEEcCEEEEEEecc--ccceEEEecCcccceEEEE---ecC-CCCH
Confidence 44555 5565577765433 134 89999999998743 3576667667777766652 222 2346
Q ss_pred HHHHHHHHH
Q 026795 91 REVRAFMEK 99 (233)
Q Consensus 91 ~e~~~~l~~ 99 (233)
.++..+..+
T Consensus 124 ~~I~~~F~s 132 (133)
T 3imo_A 124 SKLVEIFKG 132 (133)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666654
No 10
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1
Probab=17.10 E-value=4e+02 Score=21.88 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=42.5
Q ss_pred eeEEEeCeeEEecccCCCCCCcEEeCCCCCCCCceEEEEEeccccCC-HHHHHHHHHHHHhcCCCCccccccccchhHHH
Q 026795 43 SGVQVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFRKSILIGRTDLG-PREVRAFMEKLAEEYSGNTYHLITKNCNHFCN 121 (233)
Q Consensus 43 TGVeV~G~EY~FG~h~~~~sGI~~~~P~~~pg~~~resI~LG~T~lt-~~e~~~~l~~L~~~f~g~tY~LL~rNCNHFS~ 121 (233)
.-+.+.|+++.+|.-. ..||. .|.++...-. .+++.++++.|+++|.... +..+...|.+
T Consensus 5 ~~~~~~~~~~~ig~~~--~~gI~--------------~i~f~d~~~~l~~~~~~~~~~l~~~~~~a~---l~~~~~~~~~ 65 (174)
T 1mgt_A 5 EKFRVGERVVWIGVIF--SGRVQ--------------GIAFAFDRGTLMKRIHDLAEHLGKRGVSIS---LDVQPSDYPE 65 (174)
T ss_dssp EEEEETTEEEEEEEEE--SSSEE--------------EEEEESSHHHHHHHHHHHHHHHHHTTCCCC---CCBCCCSHHH
T ss_pred EEEeeCCceEEEEEec--CCCEE--------------EEEecCChHHHHHHHHHHHHHHHHhcccce---eccCcHHHHH
Confidence 4456778888887531 11443 3444443211 1345567788999998765 4456778888
Q ss_pred HHHHHccCC
Q 026795 122 DVCLKLTRK 130 (233)
Q Consensus 122 ~lc~~L~Gk 130 (233)
.+...+.|.
T Consensus 66 ~i~~~~~g~ 74 (174)
T 1mgt_A 66 KVFKVLIGE 74 (174)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHccc
Confidence 888887765
Done!