BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026796
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G0Y|A Chain A, Crystal Structure Of A Lumenal Pentapeptide Repeat Protein
From Cyanothece Sp 51142 At 2.3 Angstrom Resolution.
Tetragonal Crystal Form
Length = 184
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%)
Query: 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 167
GS+A + L ++ A FT+AD+ +S+FS + GA + A+ GAD
Sbjct: 49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGAD 108
Query: 168 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDL 215
L++ L A+LTNAVL ++ R+ A I GADFS AV+D+
Sbjct: 109 LTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDV 156
>pdb|2F3L|A Chain A, Crystal Structure Of A Lumenal Rfr-Domain Protein
(Contig83.1_1_243_746) From Cyanothece Sp. 51142 At 2.1
Angstrom Resolution
Length = 184
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%)
Query: 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 167
GS+A + L ++ A FT+AD+ +S+FS + GA + A+ GAD
Sbjct: 49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGAD 108
Query: 168 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDL 215
L++ L A+LTNAVL + R+ A I GADFS AV+D+
Sbjct: 109 LTNGLAYLTSFKGADLTNAVLTEAIXXRTKFDDAKITGADFSLAVLDV 156
>pdb|2J8K|A Chain A, Structure Of The Fusion Of Np275 And Np276, Pentapeptide
Repeat Proteins From Nostoc Punctiforme
Length = 201
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 118 LRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
L A+ + N ++AN + AD+ + +G+ GA L KA A A L ++D V
Sbjct: 57 LHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAV 116
Query: 178 LNEANL-----TNAVLVRTVLTRSDLGGAIIEGADFSD---AVIDLAQKQV 220
LN+ANL A+L + +DL A +E AD S A+ DL Q +
Sbjct: 117 LNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANL 167
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 140 ESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLG 199
E DFS GA LE N +GA L ++D L +ANL+ A L L +DL
Sbjct: 34 ERDFSIVDLRGAVLENI-----NLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLR 88
Query: 200 GAIIEGADFSDAVID 214
GA + AD SDA++D
Sbjct: 89 GANLSKADLSDAILD 103
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
A ADL A + R AN + AD+ ++ + GA L++AV +AN A+L
Sbjct: 70 ANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQ 129
Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 214
++ + EA+L+ A L L+ +DL A + A+ A ++
Sbjct: 130 AILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALE 173
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 125 KENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLT 184
+ +F + A + + SG+ +GA L++A +AN + ADLS LN A+L
Sbjct: 34 ERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGA-----TLNGADLR 88
Query: 185 NAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 216
A L + L+ + L AI+EGA +AV++ A
Sbjct: 89 GANLSKADLSDAILDNAILEGAILDEAVLNQA 120
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 30/100 (30%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKF-----NGAYLEKAVAYKANFTG 165
A +A+L +A+ N R A+ + A++ +D SG+ + A L +A +AN TG
Sbjct: 120 ANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTG 179
Query: 166 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEG 205
A+L D ++L G I+EG
Sbjct: 180 ANLED-------------------------ANLEGTILEG 194
>pdb|3DU1|X Chain X, The 2.0 Angstrom Resolution Crystal Structure Of Hetl, A
Pentapeptide Repeat Protein Involved In Heterocyst
Differentiation Regulation From The Cyanobacterium
Nostoc Sp. Strain Pcc 7120
Length = 257
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 175
ADL +A+ + A+ A +RE+D +G+K LE+A KA+ GA+L+ + R
Sbjct: 80 ADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSR 139
Query: 176 MVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFS 209
+L +A+L + RT DLG ++ GAD S
Sbjct: 140 CLLFQADLRPSSNQRT-----DLGYVLLTGADLS 168
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 131 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 190
A+ + AD+R++ S F+ L +A +A G DLS+ + R +L EA+LT A LV+
Sbjct: 55 ADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVK 114
Query: 191 TVLTRSDLGGAIIEGADFSDA 211
T L ++L A + GA+ + A
Sbjct: 115 TRLEEANLIKASLCGANLNSA 135
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANF--------TGAD 167
ADLR + + + + T AD+ +D + + A L+ A +ANF AD
Sbjct: 145 ADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAAD 204
Query: 168 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 213
LS + L+ ANL +A+L + L +DL GAI++ A+ A++
Sbjct: 205 LSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIM 250
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 28/122 (22%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANF------------ 163
ADL A VK AN A + G+ N A L + + ++A+
Sbjct: 105 ADLTGAKLVKTRLEEANLIKASL-----CGANLNSANLSRCLLFQADLRPSSNQRTDLGY 159
Query: 164 ---TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRS--------DLGGAIIEGADFSDAV 212
TGADLS + L+ ANL A L R R+ DL GA ++GAD S A
Sbjct: 160 VLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSGASLQGADLSYAN 219
Query: 213 ID 214
++
Sbjct: 220 LE 221
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 118 LRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
LR K NF+ N ++ + +G+ + A L + K+NF+ L + + +
Sbjct: 27 LRHYAAGKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAI 86
Query: 178 LNEANLTNAVLVRTVLTRSDLGGA 201
L +L+ A L R +L +DL GA
Sbjct: 87 LWGIDLSEADLYRAILREADLTGA 110
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 148 FNGAYLEKAVAYKANFTGADLS--DTLMDRM--------VLNEANLTNAVLVRTVLTRSD 197
F L++ A+ TGADLS D R+ L EA+L+ A+L L+ +D
Sbjct: 37 FQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEAD 96
Query: 198 LGGAIIEGADFSDA 211
L AI+ AD + A
Sbjct: 97 LYRAILREADLTGA 110
>pdb|2J8I|A Chain A, Structure Of Np275, A Pentapeptide Repeat Protein From
Nostoc Punctiforme
pdb|2J8I|B Chain B, Structure Of Np275, A Pentapeptide Repeat Protein From
Nostoc Punctiforme
Length = 118
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 140 ESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLG 199
E DFS GA LE N +GA L ++D L +ANL+ A L L +DL
Sbjct: 34 ERDFSIVDLRGAVLENI-----NLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLR 88
Query: 200 GAIIEGADFSDAVID 214
GA + AD SDA++D
Sbjct: 89 GANLSKADLSDAILD 103
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 113 FGSADLRKAVHVKENFR----------RANFTSADMRESDFSGSKFNGAYLEKAVAYKAN 162
F DLR AV N AN A++ +D SG+ NGA L AN
Sbjct: 37 FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLR-----GAN 91
Query: 163 FTGADLSDTLMDRMVLNEANLTNAVL 188
+ ADLSD ++D +L A L AVL
Sbjct: 92 LSKADLSDAILDNAILEGAILDEAVL 117
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 125 KENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLT 184
+ +F + A + + SG+ +GA L++A +AN + ADLS LN A+L
Sbjct: 34 ERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGA-----TLNGADLR 88
Query: 185 NAVLVRTVLTRSDLGGAIIEGADFSDAVID 214
A L + L+ + L AI+EGA +AV++
Sbjct: 89 GANLSKADLSDAILDNAILEGAILDEAVLN 118
>pdb|2O6W|A Chain A, Crystal Structure Of A Pentapeptide Repeat Protein (Rfr23)
From The Cyanobacterium Cyanothece 51142
Length = 150
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 128 FRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 187
RAN ++A++ +SD S LE A+ + N + DL + ++ L ANL NA
Sbjct: 58 LTRANLSNANLYQSDLSS-----IILENAILVETNLSETDLENAILIGANLQGANLENAN 112
Query: 188 LVRTVLTRSDLGGAIIEGADFSD 210
L L ++L GAI+ G + +
Sbjct: 113 LQGANLENANLRGAILTGVNLEE 135
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 125 KENF---RRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEA 181
+ENF R +S+ + + F K L +A AN +DLS +++ +L E
Sbjct: 27 RENFGLKYRIPRSSSPLVTTPFGXDKAKPVDLTRANLSNANLYQSDLSSIILENAILVET 86
Query: 182 NLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 214
NL+ L +L ++L GA +E A+ A ++
Sbjct: 87 NLSETDLENAILIGANLQGANLENANLQGANLE 119
>pdb|3N90|A Chain A, The 1.7 Angstrom Resolution Crystal Structure Of
At2g44920, A Pentapeptide Repeat Protein From
Arabidopsis Thaliana Thylakoid Lumen
Length = 152
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 130 RANFTSADMRESDFSGSKFNGAY-----LEKAVAYKANFTGADLSDTLMDRMVLNEANLT 184
R +F ++ +R+++F G+K GA L A +A+ GAD S + ++ L ANL
Sbjct: 30 RQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLE 89
Query: 185 NAVLVRTVLTRSDLGGAIIEGADFSDAVI 213
A T++ + G+ I GADF+D +
Sbjct: 90 GA----TMMGNTSFKGSNITGADFTDVPL 114
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 158 AYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 214
A + N++G DLS + + L+ N + AVL T L SDL A++E F +++++
Sbjct: 32 AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILN 88
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 92 ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSA-----DMRESDFSGS 146
ADL A GE + DL V N NF+ A D+R SD S +
Sbjct: 17 ADLIWLSANRTGEES-AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQA 75
Query: 147 KFNGAYLEKAVAYKANFTGADLSDTLMDRMVLN----EANLTNA-------VLVRTVLTR 195
+ ++ + NF A+LS+ ++ + N +NL NA + +L
Sbjct: 76 VLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLKNASFKGSSYIQYPPILNE 135
Query: 196 SDLGGA-IIEGADFSDAVI 213
+DL GA II G S A++
Sbjct: 136 ADLTGAIIIPGMVLSGAIL 154
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 158 AYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 214
A + N++G DLS + + L+ N + AVL T L SDL A++E F +++++
Sbjct: 29 AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILN 85
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 92 ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSA-----DMRESDFSGS 146
ADL A GE + DL V N NF+ A D+R SD S +
Sbjct: 14 ADLIWLSANRTGEES-AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQA 72
Query: 147 KFNGAYLEKAVAYKANFTGADLSDTLMDRMVLN----EANLTNA-------VLVRTVLTR 195
+ ++ + NF A+LS+ ++ + N +NL NA + +L
Sbjct: 73 VLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLKNASFKGSSYIQYPPILNE 132
Query: 196 SDLGGA-IIEGADFSDAVI 213
+DL GA II G S A++
Sbjct: 133 ADLTGAIIIPGMVLSGAIL 151
>pdb|2XTY|A Chain A, Structure Of Qnrb1 (R167e-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
pdb|2XTY|B Chain B, Structure Of Qnrb1 (R167e-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
Length = 217
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK----------ANFTG 165
AD R A + R F SA + ++ S + F+ LEK ++ A F+G
Sbjct: 97 ADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSG 156
Query: 166 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQVG 221
+DLS AN T+ L + L D+ G ++G + L +++G
Sbjct: 157 SDLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERLG 212
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 127 NFRRAN-----FTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEA 181
NF RA F S D+ +DF S G + A A+F GA + + R A
Sbjct: 58 NFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSA 117
Query: 182 NLTNAVL-----VRTVLTRSDLG-----GAIIEGADFS 209
+TN L + VL + +L GA + GA FS
Sbjct: 118 YITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFS 155
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 146 SKFNGAYLEKAVAYKANFTGADLSDT------LMDRMVLNEANLTNAVLVRTVLTRSDL 198
++F G +E + + +F+GADLS T DR N + A+L + DL
Sbjct: 16 NRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDL 74
>pdb|3PSS|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21 Crystal Form)
pdb|3PSS|B Chain B, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21 Crystal Form)
Length = 216
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186
NF ANF + + + SG+++ GA L + A+ G+DLS + ++ NL
Sbjct: 122 NFSYANFEGCLLEQCELSGNRWQGANL-----FGASLAGSDLSGSEFGQIDWASVNLQGC 176
Query: 187 VLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQVG 221
L + L DL ++G ++ +Q+G
Sbjct: 177 DLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQIG 211
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTN- 185
+ R A+F D+ +D S S+ G L A NF+ A ++ + EA+LT
Sbjct: 62 DLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVXSYFCEAHLTGN 121
Query: 186 ----AVLVRTVLTRSDLGGAIIEGADFSDAVI---DLAQKQVG 221
A +L + +L G +GA+ A + DL+ + G
Sbjct: 122 NFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFG 164
>pdb|2XTW|A Chain A, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|B Chain B, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|C Chain C, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|D Chain D, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
Length = 217
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK----------ANFTG 165
AD R A + R F SA + ++ S + F+ LEK ++ A F+G
Sbjct: 97 ADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSG 156
Query: 166 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQVG 221
+DLS AN T+ L + L D+ G ++G + L +++G
Sbjct: 157 SDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERLG 212
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 127 NFRRAN-----FTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEA 181
NF RA F S D+ +DF S G + A A+F GA + + R A
Sbjct: 58 NFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSA 117
Query: 182 NLTNAVL-----VRTVLTRSDLG-----GAIIEGADFS 209
+TN L + VL + +L GA + GA FS
Sbjct: 118 YITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFS 155
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 146 SKFNGAYLEKAVAYKANFTGADLSDT------LMDRMVLNEANLTNAVLVRTVLTRSDL 198
++F G +E + + +F+GADLS T DR N + A+L + DL
Sbjct: 16 NRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDL 74
>pdb|3PSZ|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21212 Crystal Form)
pdb|3PSZ|B Chain B, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21212 Crystal Form)
Length = 216
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186
NF ANF + + + SG+++ GA L + A+ G+DLS + ++ NL
Sbjct: 122 NFSYANFEGCLLEQCELSGNRWQGANL-----FGASLAGSDLSGSEFGQIDWASVNLQGC 176
Query: 187 VLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQVG 221
L + L DL ++G ++ +Q+G
Sbjct: 177 DLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQIG 211
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTN- 185
+ R A+F D+ +D S S+ G L A NF+ A ++ + + EA+LT
Sbjct: 62 DLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVKSYFXEAHLTGN 121
Query: 186 ----AVLVRTVLTRSDLGGAIIEGADFSDAVI---DLAQKQVG 221
A +L + +L G +GA+ A + DL+ + G
Sbjct: 122 NFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFG 164
>pdb|2XTX|A Chain A, Structure Of Qnrb1 (M102r-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
pdb|2XTX|B Chain B, Structure Of Qnrb1 (M102r-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
Length = 217
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 10/116 (8%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK----------ANFTG 165
AD R A R F SA + ++ S + F+ LEK ++ A F+G
Sbjct: 97 ADFRGASFRNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSG 156
Query: 166 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQVG 221
+DLS AN T+ L + L D+ G ++G + L +++G
Sbjct: 157 SDLSGGEFSTFDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERLG 212
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 127 NFRRAN-----FTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEA 181
NF RA F S D+ +DF S G + A A+F GA + + R A
Sbjct: 58 NFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFRNMITTRTWFCSA 117
Query: 182 NLTNAVL-----VRTVLTRSDLG-----GAIIEGADFS 209
+TN L + VL + +L GA + GA FS
Sbjct: 118 YITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFS 155
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 146 SKFNGAYLEKAVAYKANFTGADLSDT------LMDRMVLNEANLTNAVLVRTVLTRSDL 198
++F G +E + + +F+GADLS T DR N + A+L + DL
Sbjct: 16 NRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDL 74
>pdb|2BM4|A Chain A, The Structure Of Mfpa (Rv3361c, C2 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM4|B Chain B, The Structure Of Mfpa (Rv3361c, C2 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM5|A Chain A, The Structure Of Mfpa (Rv3361c, P21 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM5|B Chain B, The Structure Of Mfpa (Rv3361c, P21 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM6|A Chain A, The Structure Of Mfpa (Rv3361c, C2221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|A Chain A, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|B Chain B, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|C Chain C, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix
Length = 186
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 9/127 (7%)
Query: 93 DLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFS-----GSK 147
DL++ E R F S F +L ++ H FR F + S F+ GS
Sbjct: 21 DLSRLHTE-RAMF---SECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSV 76
Query: 148 FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGAD 207
F L +FT A L + + L L LV T L + L GA + GA
Sbjct: 77 FVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGAR 136
Query: 208 FSDAVID 214
+ A +D
Sbjct: 137 TTGARLD 143
>pdb|3SY2|A Chain A, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|B Chain B, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 621
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVL--NEANLT 184
NF + FT +D+ F +F + L V F+ +D+++ + + + +
Sbjct: 66 NFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFI 125
Query: 185 NAVLVRTVL-TRSDLGGAIIEGAD 207
+ L T++ +++L G I+ D
Sbjct: 126 DTTLKNTLIRHKANLSGVILNEPD 149
>pdb|2QYU|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 627
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLN--EANLT 184
NF + FT +D+ F +F + L V F+ +D+++ + + + +
Sbjct: 72 NFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFI 131
Query: 185 NAVLVRTVL-TRSDLGGAIIEGAD 207
+ L T++ +++L G I+ D
Sbjct: 132 DTTLKNTLIRHKANLSGVILNEPD 155
>pdb|2XT4|A Chain A, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison
Albicidin.
pdb|2XT4|B Chain B, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison Albicidin
Length = 194
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 125 KENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLT 184
+ +F F M +++ ++ E+ + + F G L+ M +++AN T
Sbjct: 68 QTSFMEVRFVDCKMLGVNWTSAQAGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFT 127
Query: 185 NAVLVRTVLTRSDLGGAI-----IEGADFSDAV---IDLAQKQV 220
A T+SDL G+ + GA F DAV ID+ +
Sbjct: 128 EADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDI 171
>pdb|3OF4|A Chain A, Crystal Structure Of A FmnFAD- And Nad(P)h-Dependent
Nitroreductase (Nfnb, Il2077) From Idiomarina Loihiensis
L2tr At 1.90 A Resolution
pdb|3OF4|B Chain B, Crystal Structure Of A FmnFAD- And Nad(P)h-Dependent
Nitroreductase (Nfnb, Il2077) From Idiomarina Loihiensis
L2tr At 1.90 A Resolution
pdb|3OF4|C Chain C, Crystal Structure Of A FmnFAD- And Nad(P)h-Dependent
Nitroreductase (Nfnb, Il2077) From Idiomarina Loihiensis
L2tr At 1.90 A Resolution
Length = 209
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 150 GAYLEKAVAYK---ANFTGADLSDTLMDRMVLNEANLT 184
G YLEK ++ A+F+GA ++D ++D++ LN LT
Sbjct: 1 GXYLEKLQQWRYATADFSGAHITDDVLDKL-LNTTRLT 37
>pdb|2QZA|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
pdb|2QZA|B Chain B, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 618
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVL--NEANLT 184
NF + FT +D+ F +F + L V F+ +D ++ + + + +
Sbjct: 63 NFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDXNEVFLQYSITTQQQPSFI 122
Query: 185 NAVLVRTVL-TRSDLGGAIIEGAD 207
+ L T++ +++L G I+ D
Sbjct: 123 DTTLKNTLIRHKANLSGVILNEPD 146
>pdb|2XT2|A Chain A, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison
Albicidin.
pdb|2XT2|B Chain B, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison Albicidin
Length = 200
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK------ANFT 164
+F +L + +F F M +++ +++ +E A++++ + F
Sbjct: 54 CEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFY 113
Query: 165 GADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAI-----IEGADFSDAV---IDLA 216
G L+ M +++AN T A T+SDL G+ + GA F DAV ID+
Sbjct: 114 GLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIF 173
Query: 217 QKQV 220
+
Sbjct: 174 HNDI 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,647,069
Number of Sequences: 62578
Number of extensions: 189009
Number of successful extensions: 501
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 89
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)