Query 026796
Match_columns 233
No_of_seqs 300 out of 1286
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 22:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3l_A RFR-domain; beta helix, 99.9 1.1E-23 3.9E-28 175.6 6.6 120 108-227 49-168 (184)
2 3n90_A P15, thylakoid lumenal 99.9 4.5E-23 1.5E-27 166.4 2.9 119 108-226 8-127 (152)
3 2o6w_A Repeat five residue (RF 99.8 1.6E-22 5.3E-27 163.3 3.0 88 127-214 47-134 (150)
4 2o6w_A Repeat five residue (RF 99.8 4.7E-22 1.6E-26 160.5 5.1 97 122-218 47-143 (150)
5 3n90_A P15, thylakoid lumenal 99.8 4.3E-21 1.5E-25 154.8 1.8 107 108-214 13-120 (152)
6 2bm5_A MFPA, RV3361C, pentapep 99.8 1.7E-20 5.9E-25 155.3 5.4 38 180-217 119-156 (186)
7 2f3l_A RFR-domain; beta helix, 99.8 1.8E-20 6.1E-25 156.2 4.9 102 115-216 51-152 (184)
8 2w7z_A EFSQNR, pentapeptide re 99.8 2.4E-20 8.1E-25 157.6 5.3 22 200-221 184-205 (214)
9 2w7z_A EFSQNR, pentapeptide re 99.8 2.2E-20 7.4E-25 157.8 4.7 94 114-207 73-166 (214)
10 2xty_A QNRB1; cell cycle, pent 99.8 5.1E-20 1.7E-24 155.7 4.9 59 166-224 152-210 (217)
11 2xt2_A ALBG, MCBG-like protein 99.8 1.1E-19 3.6E-24 151.1 6.5 57 111-167 29-85 (200)
12 2xty_A QNRB1; cell cycle, pent 99.8 6E-20 2E-24 155.2 4.3 35 113-147 69-103 (217)
13 3pss_A QNR; pentapeptide repea 99.8 5E-20 1.7E-24 154.7 3.7 69 159-227 144-212 (216)
14 2xt2_A ALBG, MCBG-like protein 99.8 8.7E-20 3E-24 151.6 4.8 73 153-225 122-194 (200)
15 3pss_A QNR; pentapeptide repea 99.8 2.5E-19 8.5E-24 150.5 5.5 42 109-150 64-105 (216)
16 3nb2_A Secreted effector prote 99.7 4E-19 1.4E-23 171.2 5.1 110 108-217 34-155 (613)
17 3nb2_A Secreted effector prote 99.7 3.4E-19 1.2E-23 171.7 4.1 113 107-219 28-147 (613)
18 2qyu_A Secreted effector prote 99.7 1.6E-17 5.6E-22 158.8 5.5 108 110-217 39-155 (627)
19 2qyu_A Secreted effector prote 99.6 1.1E-16 3.9E-21 153.0 5.3 103 106-208 40-156 (627)
No 1
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.89 E-value=1.1e-23 Score=175.56 Aligned_cols=120 Identities=32% Similarity=0.433 Sum_probs=113.0
Q ss_pred CCCceecCCeecCCccCCceeeCcEEccceecCceecCcccccceeccceeeCcEEccccccCceecceeeccceecccE
Q 026796 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 187 (233)
Q Consensus 108 ls~~~f~~~dL~g~~f~~~~l~~a~f~~a~l~~a~fs~a~l~~a~f~~a~f~~a~f~ga~ls~a~~~~a~f~~a~l~~a~ 187 (233)
+++.+|++++|++++|++++|++++|.+++|.+++|++++|++++|.+++|.+++|.+++|+++.|.+++|.+|+|++|+
T Consensus 49 ~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a~ 128 (184)
T 2f3l_A 49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAV 128 (184)
T ss_dssp ---CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCB
T ss_pred ccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCCE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceecCeeeeCcEEeCceeeCeEeChhhHHhccccccc
Q 026796 188 LVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQVGSKTSYF 227 (233)
Q Consensus 188 l~~a~l~~a~f~~a~l~gadfs~a~l~~~q~~~Lc~~~~~ 227 (233)
|.+++|.+++|.+++|+++||++|+|++.++..+|..++.
T Consensus 129 l~~a~l~~a~f~~a~L~gadf~~a~l~~~~l~~~c~~~~g 168 (184)
T 2f3l_A 129 LTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADG 168 (184)
T ss_dssp CTTCEEEEEECTTCBCTTCBCTTCEECHHHHHHHHTTCCC
T ss_pred eeCCEECCCEEeCCEecCCEecCCCCCcChHHHhhccccC
Confidence 9999999999999999999999999999999999987653
No 2
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.86 E-value=4.5e-23 Score=166.44 Aligned_cols=119 Identities=25% Similarity=0.301 Sum_probs=105.7
Q ss_pred CCCceecCCeecCCccCCceeeCcEEccceecCceecCcccccceeccceeeCcEEccccccCceecceeeccceecccE
Q 026796 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 187 (233)
Q Consensus 108 ls~~~f~~~dL~g~~f~~~~l~~a~f~~a~l~~a~fs~a~l~~a~f~~a~f~~a~f~ga~ls~a~~~~a~f~~a~l~~a~ 187 (233)
+.+++|.+++|++++|++++|.+++|.+++|++++|.+++|.+++|.+++|.+++|.+|+|++++|.+++|.+++|++|+
T Consensus 8 ~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~ 87 (152)
T 3n90_A 8 YGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNAN 87 (152)
T ss_dssp CCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred ccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCC
Confidence 56678888888888888888888888888888888888888888888888888889999999999999999999999999
Q ss_pred ecCceecC-eeeeCcEEeCceeeCeEeChhhHHhcccccc
Q 026796 188 LVRTVLTR-SDLGGAIIEGADFSDAVIDLAQKQVGSKTSY 226 (233)
Q Consensus 188 l~~a~l~~-a~f~~a~l~gadfs~a~l~~~q~~~Lc~~~~ 226 (233)
|.+++|.+ ++|.+++|++++|++++|.+.++.++|....
T Consensus 88 l~~a~~~g~~~~~~a~l~~a~~~~a~l~~~~l~~lc~~~~ 127 (152)
T 3n90_A 88 LEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVAD 127 (152)
T ss_dssp CTTCBCCSSCBCTTCBCTTCBCTTCCCCHHHHHHHHHHCC
T ss_pred CCCCEEcCCceECCCEecCCEecCCccCcHHHHHHhhhhh
Confidence 99999995 9999999999999999999999999998754
No 3
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.85 E-value=1.6e-22 Score=163.28 Aligned_cols=88 Identities=22% Similarity=0.294 Sum_probs=35.9
Q ss_pred eeeCcEEccceecCceecCcccccceeccceeeCcEEccccccCceecceeeccceecccEecCceecCeeeeCcEEeCc
Q 026796 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGA 206 (233)
Q Consensus 127 ~l~~a~f~~a~l~~a~fs~a~l~~a~f~~a~f~~a~f~ga~ls~a~~~~a~f~~a~l~~a~l~~a~l~~a~f~~a~l~ga 206 (233)
+|.+++|.+++|.+++|++++|.+++|.+++|.+++|.+++|++++|.+++|.+|+|++++|.+++|++++|.+++|+++
T Consensus 47 ~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a 126 (150)
T 2o6w_A 47 PFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGA 126 (150)
T ss_dssp STTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred ccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCCCCEecCCCCCCCCCCCceecccEECCCCcCcC
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444433333333
Q ss_pred eeeCeEeC
Q 026796 207 DFSDAVID 214 (233)
Q Consensus 207 dfs~a~l~ 214 (233)
+|++++|.
T Consensus 127 ~l~~a~l~ 134 (150)
T 2o6w_A 127 ILTGVNLE 134 (150)
T ss_dssp BCTTCBCT
T ss_pred CccCCCCC
Confidence 33333333
No 4
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.85 E-value=4.7e-22 Score=160.48 Aligned_cols=97 Identities=23% Similarity=0.360 Sum_probs=60.1
Q ss_pred ccCCceeeCcEEccceecCceecCcccccceeccceeeCcEEccccccCceecceeeccceecccEecCceecCeeeeCc
Q 026796 122 VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGA 201 (233)
Q Consensus 122 ~f~~~~l~~a~f~~a~l~~a~fs~a~l~~a~f~~a~f~~a~f~ga~ls~a~~~~a~f~~a~l~~a~l~~a~l~~a~f~~a 201 (233)
+|.+++|++++|.+++|++++|.+++|++++|.+++|.+++|.+++|+++.|.+++|.+++|++|+|.+++|.+++|+++
T Consensus 47 ~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a 126 (150)
T 2o6w_A 47 PFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGA 126 (150)
T ss_dssp STTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred ccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCCCCEecCCCCCCCCCCCceecccEECCCCcCcC
Confidence 66666666666666666666666666666666666666666666666666666666666666666555555555555555
Q ss_pred EEeCceeeCeEeChhhH
Q 026796 202 IIEGADFSDAVIDLAQK 218 (233)
Q Consensus 202 ~l~gadfs~a~l~~~q~ 218 (233)
+|.+++|++++|.+.++
T Consensus 127 ~l~~a~l~~a~l~ga~~ 143 (150)
T 2o6w_A 127 ILTGVNLEETHLKGIET 143 (150)
T ss_dssp BCTTCBCTTCBCTTCBC
T ss_pred CccCCCCCCCCcCCCEe
Confidence 55555555555555443
No 5
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.80 E-value=4.3e-21 Score=154.79 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=63.1
Q ss_pred CCCceecCCeecCCccCCceeeCcEEccceecCceecCcccccceeccceeeCcEEccccccCceecceeeccceecccE
Q 026796 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 187 (233)
Q Consensus 108 ls~~~f~~~dL~g~~f~~~~l~~a~f~~a~l~~a~fs~a~l~~a~f~~a~f~~a~f~ga~ls~a~~~~a~f~~a~l~~a~ 187 (233)
+.+++|.+++|++++|.+++|.+++|.+++|.+|+|.+++|.+++|.+++|.+|+|++++|++++|.+++|.+|+|++++
T Consensus 13 ~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~ 92 (152)
T 3n90_A 13 TRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGAT 92 (152)
T ss_dssp HTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred EcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCE
Confidence 34455555555555555555555555555555555555555555555556666666666666666666666666666666
Q ss_pred ecC-ceecCeeeeCcEEeCceeeCeEeC
Q 026796 188 LVR-TVLTRSDLGGAIIEGADFSDAVID 214 (233)
Q Consensus 188 l~~-a~l~~a~f~~a~l~gadfs~a~l~ 214 (233)
|.+ ++|++++|.+++|++++|+++.+.
T Consensus 93 ~~g~~~~~~a~l~~a~~~~a~l~~~~l~ 120 (152)
T 3n90_A 93 MMGNTSFKGSNITGADFTDVPLRDDQRV 120 (152)
T ss_dssp CCSSCBCTTCBCTTCBCTTCCCCHHHHH
T ss_pred EcCCceECCCEecCCEecCCccCcHHHH
Confidence 653 666666666666666666555554
No 6
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=99.80 E-value=1.7e-20 Score=155.33 Aligned_cols=38 Identities=26% Similarity=0.380 Sum_probs=15.4
Q ss_pred cceecccEecCceecCeeeeCcEEeCceeeCeEeChhh
Q 026796 180 EANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217 (233)
Q Consensus 180 ~a~l~~a~l~~a~l~~a~f~~a~l~gadfs~a~l~~~q 217 (233)
+|+|++++|.+++|++++|.+++++++||+++++.+.+
T Consensus 119 ~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~~ 156 (186)
T 2bm5_A 119 DTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVL 156 (186)
T ss_dssp TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHH
T ss_pred CCccCCCCcCCCccCCCEecCCccCCcccCCCEeeccc
Confidence 33333333333333444444444444444444444433
No 7
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.80 E-value=1.8e-20 Score=156.20 Aligned_cols=102 Identities=25% Similarity=0.296 Sum_probs=42.2
Q ss_pred CCeecCCccCCceeeCcEEccceecCceecCcccccceeccceeeCcEEccccccCceecceeeccceecccEecCceec
Q 026796 115 SADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLT 194 (233)
Q Consensus 115 ~~dL~g~~f~~~~l~~a~f~~a~l~~a~fs~a~l~~a~f~~a~f~~a~f~ga~ls~a~~~~a~f~~a~l~~a~l~~a~l~ 194 (233)
+++|++++|.+++|++++|.+++|.+|+|.+++|++++|.++.|.+|+|.+++|++++|.++.|.+|+|++|+|++++|+
T Consensus 51 ~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a~l~ 130 (184)
T 2f3l_A 51 SASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLT 130 (184)
T ss_dssp -CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCT
T ss_pred CccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCCEee
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CeeeeCcEEeCceeeCeEeChh
Q 026796 195 RSDLGGAIIEGADFSDAVIDLA 216 (233)
Q Consensus 195 ~a~f~~a~l~gadfs~a~l~~~ 216 (233)
+++|.+++|.+++|++++|.+.
T Consensus 131 ~a~l~~a~f~~a~L~gadf~~a 152 (184)
T 2f3l_A 131 EAIMMRTKFDDAKITGADFSLA 152 (184)
T ss_dssp TCEEEEEECTTCBCTTCBCTTC
T ss_pred CCEECCCEEeCCEecCCEecCC
Confidence 4444444444444444444333
No 8
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.80 E-value=2.4e-20 Score=157.56 Aligned_cols=22 Identities=9% Similarity=-0.107 Sum_probs=10.2
Q ss_pred CcEEeCceeeCeEeChhhHHhc
Q 026796 200 GAIIEGADFSDAVIDLAQKQVG 221 (233)
Q Consensus 200 ~a~l~gadfs~a~l~~~q~~~L 221 (233)
++++.+++|++++|+..|...+
T Consensus 184 ~~~~~~a~l~ga~~~~~q~~~l 205 (214)
T 2w7z_A 184 RLTFSPNYLSGLXVTPEQAIYL 205 (214)
T ss_dssp CCBCCGGGCTTCEECHHHHHHH
T ss_pred ceEcCHHHcCCcccCHHHHHHH
Confidence 3333334444555555555444
No 9
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.80 E-value=2.2e-20 Score=157.81 Aligned_cols=94 Identities=10% Similarity=0.159 Sum_probs=40.2
Q ss_pred cCCeecCCccCCceeeCcEEccceecCceecCcccccceeccceeeCcEEccccccCceecceeeccceecccEecCcee
Q 026796 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVL 193 (233)
Q Consensus 114 ~~~dL~g~~f~~~~l~~a~f~~a~l~~a~fs~a~l~~a~f~~a~f~~a~f~ga~ls~a~~~~a~f~~a~l~~a~l~~a~l 193 (233)
.++.|++++|.+++|.+++|.+++|.+|+|.+++|++++|.++.|.+|+|.+++|++++|.++.|.+|+|++++|.+++|
T Consensus 73 ~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~L 152 (214)
T 2w7z_A 73 SNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTW 152 (214)
T ss_dssp EEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEE
T ss_pred cCCEEEeeECcCCCccCCEEEeeEEeCCeeeCCCcCCCEeeeeEEeCCCCCCCcCCcCccCceEEEecccCCCCccCCEE
Confidence 33333333334444444444444444444444444444444444444444444444444444444444444444444443
Q ss_pred cCeeeeCcEEeCce
Q 026796 194 TRSDLGGAIIEGAD 207 (233)
Q Consensus 194 ~~a~f~~a~l~gad 207 (233)
++++|.+++|++++
T Consensus 153 ~~a~f~~~~L~~a~ 166 (214)
T 2w7z_A 153 XXLLLEACDLTESN 166 (214)
T ss_dssp EEEEEESCBCTTCB
T ss_pred EEEEEEecccccCE
Confidence 33333333333333
No 10
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=99.78 E-value=5.1e-20 Score=155.68 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=29.8
Q ss_pred ccccCceecceeeccceecccEecCceecCeeeeCcEEeCceeeCeEeChhhHHhcccc
Q 026796 166 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQVGSKT 224 (233)
Q Consensus 166 a~ls~a~~~~a~f~~a~l~~a~l~~a~l~~a~f~~a~l~gadfs~a~l~~~q~~~Lc~~ 224 (233)
++|++++|.+++|.+++|++++|++++|++++|.++++++++|++++++..|...+.+.
T Consensus 152 a~l~~a~l~~a~l~~a~l~~a~l~~adl~~a~l~~~~l~~a~l~ga~~~~~q~~~l~~~ 210 (217)
T 2xty_A 152 ATFSGSDLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMER 210 (217)
T ss_dssp CBCTTCBCTTCBCTTCCTTSSBCTTCBCTTCBCTTCCTTTSCCTTCEECHHHHHHHHHT
T ss_pred CEECCCccCCCCCCCCCcCCCcCCCCcCCCCCcCCCcCCCCccCcCEechHHHHHHHHH
Confidence 33333333333333444444444444444455555555556666667777776665443
No 11
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.78 E-value=1.1e-19 Score=151.07 Aligned_cols=57 Identities=11% Similarity=0.249 Sum_probs=22.8
Q ss_pred ceecCCeecCCccCCceeeCcEEccceecCceecCcccccceeccceeeCcEEcccc
Q 026796 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 167 (233)
Q Consensus 111 ~~f~~~dL~g~~f~~~~l~~a~f~~a~l~~a~fs~a~l~~a~f~~a~f~~a~f~ga~ 167 (233)
++|.+++|++++|++++|++++|.+++|.+|+|++++|++++|.++.|.+|+|.+++
T Consensus 29 ~~~~~~~f~~~~~~~~~l~~~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~ 85 (200)
T 2xt2_A 29 IRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVN 85 (200)
T ss_dssp CEEESCEEESCBCTTCEEESCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCB
T ss_pred CEEccCEEEeeeccCCeecCCEEEecEeeecccccCccccCeeeeeEEEcCEecCCc
Confidence 333334444444444444444444444444444444433333333333333333333
No 12
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=99.78 E-value=6e-20 Score=155.25 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=12.8
Q ss_pred ecCCeecCCccCCceeeCcEEccceecCceecCcc
Q 026796 113 FGSADLRKAVHVKENFRRANFTSADMRESDFSGSK 147 (233)
Q Consensus 113 f~~~dL~g~~f~~~~l~~a~f~~a~l~~a~fs~a~ 147 (233)
|.+++|++++|.+++|.+++|.+++|.+++|++++
T Consensus 69 f~~~~l~~a~f~~a~l~~a~f~~~~l~~a~f~~a~ 103 (217)
T 2xty_A 69 FKSCDLSMADFRNSSALGIEIRHCRAQGADFRGAS 103 (217)
T ss_dssp EESCBCTTCBCTTCBCTTEEEESCBCTTCBCTTCB
T ss_pred cCCCCCCCCccCCCccCCCcccCCCcCCCCcCCCc
Confidence 33333333333333333333333333333333333
No 13
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=99.78 E-value=5e-20 Score=154.75 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=41.0
Q ss_pred eCcEEccccccCceecceeeccceecccEecCceecCeeeeCcEEeCceeeCeEeChhhHHhccccccc
Q 026796 159 YKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQVGSKTSYF 227 (233)
Q Consensus 159 ~~a~f~ga~ls~a~~~~a~f~~a~l~~a~l~~a~l~~a~f~~a~l~gadfs~a~l~~~q~~~Lc~~~~~ 227 (233)
.+++|.+++|++++|.+++|.+++|.+++|++++|++++|.++++.+++|++++++..|+..+++...+
T Consensus 144 ~~a~l~~a~~~~a~l~~a~~~~a~l~~~~l~~a~l~~a~l~~~~l~~~~l~ga~~~~~q~~~l~~~lgi 212 (216)
T 3pss_A 144 QGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQIGL 212 (216)
T ss_dssp TTCBCTTCBCTTCBCTTCBCCSCCGGGSBCTTCBCTTCCCTTCCTTTSCCTTCEEEGGGHHHHHHHTTC
T ss_pred cCCEecCCEeecccccCCCccCCeecCcccCCCCccCCEecCcccccCcccCcEeCHHHHHHHHHHhCC
Confidence 333333333344444444444444445566666666666666666677788888888888887776544
No 14
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.78 E-value=8.7e-20 Score=151.58 Aligned_cols=73 Identities=19% Similarity=0.101 Sum_probs=37.9
Q ss_pred eccceeeCcEEccccccCceecceeeccceecccEecCceecCeeeeCcEEeCceeeCeEeChhhHHhccccc
Q 026796 153 LEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQVGSKTS 225 (233)
Q Consensus 153 f~~a~f~~a~f~ga~ls~a~~~~a~f~~a~l~~a~l~~a~l~~a~f~~a~l~gadfs~a~l~~~q~~~Lc~~~ 225 (233)
|.+++|.+++|.+++|++++|.+++|.+++|.+++|++++|+++++.+++++++++++++|+..|+..|-...
T Consensus 122 f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~~~~~~~~l~ga~~~~~~~~~l~~~l 194 (200)
T 2xt2_A 122 MVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLPEAASLLNSL 194 (200)
T ss_dssp EESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBCTTCBSCCCCTTSSBCTTCEECTTGGGGGGGGS
T ss_pred ecCCEeecccCCCCccccCCccCcccCCCCccCCccccCCcCCCCccccccccccccCcEECHHHHHHHHHhc
Confidence 3333333333333333444444444444444444444555555555555566667777777777777765443
No 15
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=99.76 E-value=2.5e-19 Score=150.49 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=18.2
Q ss_pred CCceecCCeecCCccCCceeeCcEEccceecCceecCccccc
Q 026796 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNG 150 (233)
Q Consensus 109 s~~~f~~~dL~g~~f~~~~l~~a~f~~a~l~~a~fs~a~l~~ 150 (233)
.++.|.+++|++++|.+++|.+++|.+++|.+++|++++|.+
T Consensus 64 ~~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~a~l~~ 105 (216)
T 3pss_A 64 REASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFAN 105 (216)
T ss_dssp TTCEEESCBCTTCBCTTCBCTTEEEESCBCTTCBCTTCBCEE
T ss_pred cCCCcCccCCCCCccCCCCcccCCcccCcccCCCcccCcccc
Confidence 334444444444444444444444444444444444444333
No 16
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.75 E-value=4e-19 Score=171.23 Aligned_cols=110 Identities=25% Similarity=0.351 Sum_probs=53.5
Q ss_pred CCCceecCCeecCCccCCceeeCcEEccceecCceecCcccccceeccceeeCcEEccccccCce----ecceeecccee
Q 026796 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL----MDRMVLNEANL 183 (233)
Q Consensus 108 ls~~~f~~~dL~g~~f~~~~l~~a~f~~a~l~~a~fs~a~l~~a~f~~a~f~~a~f~ga~ls~a~----~~~a~f~~a~l 183 (233)
+++++|.+++|++++|.+++|.+++|.+++|++|+|.+++|++|+|.+++|.+|+|.+|+|+++. |.+++|.+|+|
T Consensus 34 fsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~LsgAdL 113 (613)
T 3nb2_A 34 YSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNL 113 (613)
T ss_dssp CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCBCTTCBC
T ss_pred eCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCEecCCee
Confidence 44455555555555555555555555555555555555555555555555555555555555555 44444444444
Q ss_pred cccEecCceec-------CeeeeCcEE-eCceeeCeEeChhh
Q 026796 184 TNAVLVRTVLT-------RSDLGGAII-EGADFSDAVIDLAQ 217 (233)
Q Consensus 184 ~~a~l~~a~l~-------~a~f~~a~l-~gadfs~a~l~~~q 217 (233)
++|+|.+++|+ +++|.||+| ++++|++|+|++.+
T Consensus 114 ~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAdLsgA~L~~a~ 155 (613)
T 3nb2_A 114 KNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAILGDVK 155 (613)
T ss_dssp TTCBCTTCBCSSSCCBCTTCBCTTCEECTTCCCTTCBCCCCS
T ss_pred cccEEeccEEecCccceeccccCCCeeCCCceecCCCccCCe
Confidence 44444443333 344444444 44444444444443
No 17
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.75 E-value=3.4e-19 Score=171.67 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=83.4
Q ss_pred cCCCceecCCeecCCccCCceeeCcEEccceecCceecCcccccceeccceeeCcEEccccccCceeccee----eccce
Q 026796 107 IGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV----LNEAN 182 (233)
Q Consensus 107 ~ls~~~f~~~dL~g~~f~~~~l~~a~f~~a~l~~a~fs~a~l~~a~f~~a~f~~a~f~ga~ls~a~~~~a~----f~~a~ 182 (233)
.+.+++|++++|++++|.+++|++++|.+++|.+|+|.+|+|.+|+|.+++|.+|+|.+|+|.+++|.+++ |.+|+
T Consensus 28 ~f~~~dfsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~ 107 (613)
T 3nb2_A 28 SAEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSN 107 (613)
T ss_dssp CTTTTBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCB
T ss_pred CcCCCeeCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCE
Confidence 35677777777777777777777777777777777777777777777777777777777777777777777 77777
Q ss_pred ecccEecCceecCeeeeC--cEEeCceeeCeEe-ChhhHH
Q 026796 183 LTNAVLVRTVLTRSDLGG--AIIEGADFSDAVI-DLAQKQ 219 (233)
Q Consensus 183 l~~a~l~~a~l~~a~f~~--a~l~gadfs~a~l-~~~q~~ 219 (233)
|++|+|.+|+|++++|.+ |+|++++|++|.| .+.+..
T Consensus 108 LsgAdL~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAdLs 147 (613)
T 3nb2_A 108 FSNSNLKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLS 147 (613)
T ss_dssp CTTCBCTTCBCTTCBCSSSCCBCTTCBCTTCEECTTCCCT
T ss_pred ecCCeecccEEeccEEecCccceeccccCCCeeCCCceec
Confidence 777777777777777775 6666666666666 555443
No 18
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.68 E-value=1.6e-17 Score=158.80 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=50.6
Q ss_pred CceecCCeecCCccCCc------eeeCcEEccceecCceecCcccccceeccceeeCcEEccccccCceecceeecccee
Q 026796 110 AAQFGSADLRKAVHVKE------NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANL 183 (233)
Q Consensus 110 ~~~f~~~dL~g~~f~~~------~l~~a~f~~a~l~~a~fs~a~l~~a~f~~a~f~~a~f~ga~ls~a~~~~a~f~~a~l 183 (233)
+.+|+++||++++|.++ +..+|+|.+++|++|+|++++|++++|.+|+|.+|+|.+|+|++|+|.+|+|.+|+|
T Consensus 39 drDFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL 118 (627)
T 2qyu_A 39 DRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFL 118 (627)
T ss_dssp TTBCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEE
T ss_pred CCcCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCccc
Confidence 34555555555555543 223333344444444444444444444444444444444444444444444444444
Q ss_pred cccEec--CceecCeeeeCcEE-eCceeeCeEeChhh
Q 026796 184 TNAVLV--RTVLTRSDLGGAII-EGADFSDAVIDLAQ 217 (233)
Q Consensus 184 ~~a~l~--~a~l~~a~f~~a~l-~gadfs~a~l~~~q 217 (233)
.+|+|. +|+|.+|+|.|+++ +||||++|+|++.+
T Consensus 119 ~gA~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~ad 155 (627)
T 2qyu_A 119 QYSITTQQQPSFIDTTLKNTLIRHKANLSGVILNEPD 155 (627)
T ss_dssp CCCTTCCSCCEEEEEECTTCEECSCCEEEEEECCCCC
T ss_pred CCccccCCCCeeCCCCCCCCccccCccCCCCcCCCCc
Confidence 444443 45555555555555 45666666666655
No 19
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.63 E-value=1.1e-16 Score=153.03 Aligned_cols=103 Identities=20% Similarity=0.378 Sum_probs=53.5
Q ss_pred ccCCCceecCCeecCC-----------ccCCceeeCcEEccceecCceecCcccccceeccceeeCcEEccccccCceec
Q 026796 106 GIGSAAQFGSADLRKA-----------VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD 174 (233)
Q Consensus 106 ~~ls~~~f~~~dL~g~-----------~f~~~~l~~a~f~~a~l~~a~fs~a~l~~a~f~~a~f~~a~f~ga~ls~a~~~ 174 (233)
.+++|++|++++|.++ +|.|++|.+++|.+++|++++|.+|+|++|+|.+++|.+|+|.||+|++|+|.
T Consensus 40 rDFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL~ 119 (627)
T 2qyu_A 40 RDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQ 119 (627)
T ss_dssp TBCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEEC
T ss_pred CcCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCcccC
Confidence 3466667777666654 44444444444444444444444455555555555555555555555555555
Q ss_pred ceeec--cceecccEecCcee-cCeeeeCcEEeCcee
Q 026796 175 RMVLN--EANLTNAVLVRTVL-TRSDLGGAIIEGADF 208 (233)
Q Consensus 175 ~a~f~--~a~l~~a~l~~a~l-~~a~f~~a~l~gadf 208 (233)
+++|. +|+|++|+|.+++| .+++|+||++++++.
T Consensus 120 gA~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~ad~ 156 (627)
T 2qyu_A 120 YSITTQQQPSFIDTTLKNTLIRHKANLSGVILNEPDN 156 (627)
T ss_dssp CCTTCCSCCEEEEEECTTCEECSCCEEEEEECCCCCS
T ss_pred CccccCCCCeeCCCCCCCCccccCccCCCCcCCCCcc
Confidence 55443 45555555555555 345555555555543
Done!