Query 026797
Match_columns 233
No_of_seqs 281 out of 1989
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 12:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 1.2E-19 2.6E-24 162.3 7.9 77 102-180 203-280 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 7.7E-16 1.7E-20 99.0 2.0 44 130-174 1-44 (44)
3 PHA02929 N1R/p28-like protein; 99.3 8.3E-13 1.8E-17 113.6 5.1 77 103-179 147-228 (238)
4 COG5540 RING-finger-containing 99.3 4.9E-13 1.1E-17 116.7 3.5 51 128-179 322-373 (374)
5 COG5243 HRD1 HRD ubiquitin lig 99.3 2.5E-12 5.5E-17 114.9 7.2 69 108-180 269-347 (491)
6 PF12678 zf-rbx1: RING-H2 zinc 99.3 9.4E-13 2E-17 93.8 3.5 46 128-174 18-73 (73)
7 KOG0317 Predicted E3 ubiquitin 99.1 1.2E-10 2.6E-15 101.4 5.1 50 126-179 236-285 (293)
8 PLN03208 E3 ubiquitin-protein 99.0 4.8E-10 1E-14 93.3 5.7 50 127-180 16-81 (193)
9 cd00162 RING RING-finger (Real 99.0 3.4E-10 7.4E-15 71.4 3.5 44 131-177 1-45 (45)
10 PF13920 zf-C3HC4_3: Zinc fing 99.0 2.6E-10 5.6E-15 75.1 3.0 46 129-178 2-48 (50)
11 PF13923 zf-C3HC4_2: Zinc fing 98.9 5.4E-10 1.2E-14 69.8 2.8 39 132-173 1-39 (39)
12 PF12861 zf-Apc11: Anaphase-pr 98.9 6.3E-10 1.4E-14 80.8 3.3 51 128-178 20-82 (85)
13 KOG0802 E3 ubiquitin ligase [P 98.9 2.1E-09 4.6E-14 103.2 6.6 51 128-179 290-342 (543)
14 KOG0320 Predicted E3 ubiquitin 98.9 1.2E-09 2.6E-14 89.1 3.5 51 128-180 130-180 (187)
15 KOG0823 Predicted E3 ubiquitin 98.9 2.6E-09 5.6E-14 90.6 5.2 51 126-180 44-97 (230)
16 PHA02926 zinc finger-like prot 98.8 2.2E-09 4.7E-14 90.6 3.5 52 127-178 168-230 (242)
17 PF14634 zf-RING_5: zinc-RING 98.8 4.3E-09 9.2E-14 67.5 3.0 44 131-175 1-44 (44)
18 PF00097 zf-C3HC4: Zinc finger 98.7 8.5E-09 1.8E-13 64.8 2.3 39 132-173 1-41 (41)
19 smart00184 RING Ring finger. E 98.7 1.3E-08 2.9E-13 61.8 3.1 38 132-173 1-39 (39)
20 COG5194 APC11 Component of SCF 98.6 2.3E-08 5E-13 71.2 2.9 49 130-178 21-81 (88)
21 PF15227 zf-C3HC4_4: zinc fing 98.6 3E-08 6.6E-13 63.0 2.7 38 132-173 1-42 (42)
22 KOG0804 Cytoplasmic Zn-finger 98.5 2.9E-08 6.2E-13 91.1 2.2 72 128-212 174-246 (493)
23 smart00504 Ubox Modified RING 98.5 9.2E-08 2E-12 65.4 3.8 45 130-178 2-46 (63)
24 KOG0828 Predicted E3 ubiquitin 98.5 1.6E-07 3.5E-12 87.1 4.8 50 129-179 571-635 (636)
25 TIGR00599 rad18 DNA repair pro 98.4 1.2E-07 2.6E-12 87.3 3.5 48 128-179 25-72 (397)
26 KOG1493 Anaphase-promoting com 98.4 2.9E-08 6.3E-13 70.1 -0.5 50 128-177 19-80 (84)
27 KOG1734 Predicted RING-contain 98.4 1.6E-07 3.5E-12 81.3 2.0 50 127-177 222-280 (328)
28 COG5574 PEX10 RING-finger-cont 98.4 2.2E-07 4.8E-12 80.3 2.7 50 127-180 213-264 (271)
29 smart00744 RINGv The RING-vari 98.3 7.5E-07 1.6E-11 58.5 2.9 42 131-174 1-49 (49)
30 PF13445 zf-RING_UBOX: RING-ty 98.2 7.4E-07 1.6E-11 56.9 2.4 34 132-167 1-35 (43)
31 KOG2930 SCF ubiquitin ligase, 98.2 6.1E-07 1.3E-11 67.0 2.0 49 129-177 46-107 (114)
32 KOG2164 Predicted E3 ubiquitin 98.2 9.8E-07 2.1E-11 82.4 2.6 47 129-179 186-237 (513)
33 TIGR00570 cdk7 CDK-activating 98.1 3.1E-06 6.6E-11 75.4 3.7 51 129-180 3-56 (309)
34 COG5219 Uncharacterized conser 98.0 1.5E-06 3.3E-11 85.9 0.8 50 129-178 1469-1523(1525)
35 PF11793 FANCL_C: FANCL C-term 98.0 1.6E-06 3.5E-11 61.1 0.7 50 129-178 2-66 (70)
36 KOG4265 Predicted E3 ubiquitin 98.0 3.8E-06 8.3E-11 75.5 2.9 50 127-180 288-338 (349)
37 KOG2177 Predicted E3 ubiquitin 97.9 3.8E-06 8.2E-11 72.3 1.9 44 127-174 11-54 (386)
38 KOG0287 Postreplication repair 97.9 4.1E-06 8.8E-11 74.8 1.5 47 130-180 24-70 (442)
39 KOG0827 Predicted E3 ubiquitin 97.9 4.9E-06 1.1E-10 75.4 1.9 46 130-175 5-53 (465)
40 COG5432 RAD18 RING-finger-cont 97.8 8.8E-06 1.9E-10 71.4 2.4 45 130-178 26-70 (391)
41 PF04564 U-box: U-box domain; 97.8 1.4E-05 3E-10 56.7 2.8 48 129-180 4-52 (73)
42 KOG1645 RING-finger-containing 97.7 3E-05 6.6E-10 70.8 3.3 48 129-176 4-54 (463)
43 PF14835 zf-RING_6: zf-RING of 97.6 1.1E-05 2.4E-10 55.5 -0.0 46 130-180 8-53 (65)
44 KOG0825 PHD Zn-finger protein 97.6 1.4E-05 3E-10 78.0 -0.0 49 130-179 124-172 (1134)
45 KOG1039 Predicted E3 ubiquitin 97.5 4.1E-05 8.9E-10 69.5 2.3 51 127-177 159-220 (344)
46 KOG4445 Uncharacterized conser 97.5 2.1E-05 4.6E-10 69.3 0.3 50 130-180 116-188 (368)
47 KOG3970 Predicted E3 ubiquitin 97.5 6.2E-05 1.4E-09 63.9 2.2 54 127-182 48-109 (299)
48 KOG0311 Predicted E3 ubiquitin 97.4 1.6E-05 3.4E-10 71.4 -1.9 50 128-180 42-92 (381)
49 KOG1785 Tyrosine kinase negati 97.3 0.00019 4E-09 65.7 2.9 48 130-181 370-419 (563)
50 KOG4172 Predicted E3 ubiquitin 97.2 0.00011 2.4E-09 48.8 0.8 47 129-179 7-55 (62)
51 KOG1571 Predicted E3 ubiquitin 97.2 0.00015 3.2E-09 65.5 1.4 44 128-178 304-347 (355)
52 KOG0824 Predicted E3 ubiquitin 97.2 0.00021 4.5E-09 63.1 2.0 48 129-180 7-55 (324)
53 KOG1428 Inhibitor of type V ad 97.0 0.00046 1E-08 71.4 3.1 64 114-178 3471-3544(3738)
54 PF05883 Baculo_RING: Baculovi 97.0 0.00023 4.9E-09 56.1 0.7 35 129-164 26-66 (134)
55 KOG0826 Predicted E3 ubiquitin 97.0 0.0024 5.2E-08 57.1 6.8 49 125-176 296-344 (357)
56 KOG0978 E3 ubiquitin ligase in 96.9 0.00031 6.8E-09 68.7 1.2 45 130-178 644-689 (698)
57 KOG0297 TNF receptor-associate 96.8 0.00075 1.6E-08 62.6 2.8 51 127-180 19-69 (391)
58 KOG1941 Acetylcholine receptor 96.8 0.0004 8.7E-09 63.4 0.9 46 129-175 365-413 (518)
59 PF11789 zf-Nse: Zinc-finger o 96.7 0.00084 1.8E-08 45.4 1.8 41 129-172 11-53 (57)
60 KOG4159 Predicted E3 ubiquitin 96.6 0.0012 2.5E-08 61.2 2.1 50 127-180 82-131 (398)
61 KOG0801 Predicted E3 ubiquitin 96.4 0.001 2.2E-08 53.9 0.4 41 115-157 164-204 (205)
62 KOG1952 Transcription factor N 96.3 0.0016 3.6E-08 64.4 1.6 50 127-176 189-245 (950)
63 PF12906 RINGv: RING-variant d 96.1 0.004 8.6E-08 40.4 2.0 41 132-173 1-47 (47)
64 PF10367 Vps39_2: Vacuolar sor 95.8 0.0041 8.8E-08 46.5 1.4 32 128-161 77-108 (109)
65 COG5152 Uncharacterized conser 95.8 0.0037 8E-08 52.3 0.9 43 130-176 197-239 (259)
66 KOG2660 Locus-specific chromos 95.7 0.0026 5.5E-08 57.0 -0.3 49 129-180 15-63 (331)
67 PHA03096 p28-like protein; Pro 95.5 0.0067 1.4E-07 53.9 1.8 48 130-177 179-236 (284)
68 PHA02825 LAP/PHD finger-like p 95.5 0.014 3.1E-07 47.3 3.4 50 127-180 6-61 (162)
69 PHA02862 5L protein; Provision 95.5 0.012 2.5E-07 47.0 2.7 46 129-179 2-54 (156)
70 PF08746 zf-RING-like: RING-li 95.5 0.0093 2E-07 37.9 1.8 41 132-173 1-43 (43)
71 KOG3039 Uncharacterized conser 95.4 0.013 2.9E-07 50.6 3.0 52 129-180 221-272 (303)
72 PF14570 zf-RING_4: RING/Ubox 95.4 0.014 3E-07 38.1 2.3 45 132-177 1-47 (48)
73 COG5175 MOT2 Transcriptional r 95.3 0.017 3.7E-07 52.1 3.6 74 127-227 12-87 (480)
74 KOG4692 Predicted E3 ubiquitin 95.2 0.017 3.6E-07 52.4 3.2 49 127-179 420-468 (489)
75 KOG1814 Predicted E3 ubiquitin 94.9 0.013 2.8E-07 54.1 1.7 36 129-165 184-219 (445)
76 KOG1002 Nucleotide excision re 94.9 0.012 2.6E-07 55.9 1.3 49 127-179 534-587 (791)
77 KOG0827 Predicted E3 ubiquitin 94.8 0.0024 5.2E-08 58.3 -3.3 51 129-180 196-247 (465)
78 COG5236 Uncharacterized conser 94.6 0.034 7.3E-07 50.4 3.6 62 112-177 44-107 (493)
79 KOG4275 Predicted E3 ubiquitin 94.3 0.0085 1.8E-07 53.0 -1.0 43 129-179 300-343 (350)
80 KOG4739 Uncharacterized protei 94.2 0.016 3.4E-07 49.9 0.4 43 131-177 5-47 (233)
81 KOG1940 Zn-finger protein [Gen 94.1 0.028 6.1E-07 49.7 1.8 49 129-179 158-207 (276)
82 KOG2879 Predicted E3 ubiquitin 93.7 0.067 1.4E-06 47.0 3.4 52 125-179 235-288 (298)
83 KOG1813 Predicted E3 ubiquitin 93.5 0.036 7.8E-07 49.1 1.5 44 130-177 242-285 (313)
84 KOG4185 Predicted E3 ubiquitin 93.5 0.052 1.1E-06 48.1 2.5 47 130-177 4-54 (296)
85 COG5222 Uncharacterized conser 93.3 0.075 1.6E-06 47.3 3.1 63 108-175 255-318 (427)
86 PF14446 Prok-RING_1: Prokaryo 93.2 0.12 2.6E-06 34.5 3.2 34 129-162 5-38 (54)
87 KOG3268 Predicted E3 ubiquitin 93.2 0.062 1.3E-06 44.4 2.3 29 150-178 189-228 (234)
88 PF14447 Prok-RING_4: Prokaryo 93.2 0.038 8.3E-07 36.9 0.9 43 130-178 8-50 (55)
89 KOG2114 Vacuolar assembly/sort 92.5 0.064 1.4E-06 53.6 1.6 40 130-175 841-880 (933)
90 PF04641 Rtf2: Rtf2 RING-finge 92.3 0.16 3.5E-06 44.5 3.9 51 127-178 111-161 (260)
91 KOG2034 Vacuolar sorting prote 92.2 0.067 1.5E-06 53.7 1.4 36 127-164 815-850 (911)
92 KOG2932 E3 ubiquitin ligase in 91.4 0.084 1.8E-06 47.2 1.1 44 130-178 91-134 (389)
93 KOG0298 DEAD box-containing he 91.0 0.074 1.6E-06 55.3 0.3 44 130-176 1154-1197(1394)
94 PF02439 Adeno_E3_CR2: Adenovi 90.7 0.57 1.2E-05 28.9 3.9 29 54-82 4-32 (38)
95 KOG1001 Helicase-like transcri 89.7 0.14 3E-06 50.9 1.0 46 130-180 455-502 (674)
96 KOG0309 Conserved WD40 repeat- 89.7 0.2 4.2E-06 49.8 2.0 22 150-171 1047-1068(1081)
97 PF07800 DUF1644: Protein of u 89.7 0.39 8.5E-06 39.0 3.4 36 129-165 2-47 (162)
98 KOG3161 Predicted E3 ubiquitin 89.5 0.12 2.6E-06 50.3 0.4 44 130-176 12-55 (861)
99 KOG0802 E3 ubiquitin ligase [P 89.2 0.19 4.2E-06 48.6 1.6 51 124-182 474-524 (543)
100 PF10272 Tmpp129: Putative tra 88.9 0.4 8.7E-06 44.0 3.3 25 153-177 313-350 (358)
101 KOG0825 PHD Zn-finger protein 88.9 0.37 8E-06 48.1 3.2 60 129-188 96-164 (1134)
102 PF15050 SCIMP: SCIMP protein 88.8 1.3 2.8E-05 34.4 5.5 31 55-85 7-39 (133)
103 KOG1609 Protein involved in mR 87.3 0.39 8.3E-06 42.5 2.1 50 129-179 78-135 (323)
104 KOG3800 Predicted E3 ubiquitin 87.2 0.56 1.2E-05 41.6 3.0 47 131-178 2-51 (300)
105 PF01102 Glycophorin_A: Glycop 85.1 1.4 3E-05 34.4 4.0 7 50-56 59-65 (122)
106 COG5220 TFB3 Cdk activating ki 84.6 0.37 8.1E-06 41.7 0.6 48 128-175 9-61 (314)
107 KOG3002 Zn finger protein [Gen 83.7 0.76 1.6E-05 41.2 2.2 44 130-179 49-92 (299)
108 KOG0269 WD40 repeat-containing 83.2 1.1 2.3E-05 44.7 3.1 41 130-172 780-820 (839)
109 KOG1100 Predicted E3 ubiquitin 82.8 0.62 1.3E-05 39.6 1.2 38 132-177 161-199 (207)
110 KOG1829 Uncharacterized conser 82.6 0.44 9.6E-06 46.3 0.3 43 129-175 511-558 (580)
111 KOG3053 Uncharacterized conser 82.4 0.61 1.3E-05 40.8 1.1 51 127-178 18-82 (293)
112 KOG1812 Predicted E3 ubiquitin 82.1 0.62 1.4E-05 43.2 1.1 37 129-166 146-183 (384)
113 PF14979 TMEM52: Transmembrane 81.6 2.5 5.5E-05 33.9 4.2 31 55-85 21-51 (154)
114 PF13901 DUF4206: Domain of un 81.3 1.1 2.5E-05 37.7 2.3 41 129-175 152-197 (202)
115 PF03854 zf-P11: P-11 zinc fin 81.2 0.56 1.2E-05 30.4 0.3 43 131-179 4-47 (50)
116 KOG4718 Non-SMC (structural ma 80.4 0.78 1.7E-05 39.0 1.0 43 129-174 181-223 (235)
117 COG5183 SSM4 Protein involved 77.7 1.9 4.2E-05 43.4 2.9 52 127-179 10-67 (1175)
118 PF12877 DUF3827: Domain of un 75.6 2.2 4.9E-05 41.8 2.7 33 52-84 265-297 (684)
119 KOG4362 Transcriptional regula 75.3 0.78 1.7E-05 45.3 -0.5 47 129-179 21-70 (684)
120 PF05290 Baculo_IE-1: Baculovi 74.6 2.5 5.4E-05 33.4 2.2 50 129-178 80-132 (140)
121 PHA02849 putative transmembran 72.5 17 0.00037 26.0 5.8 66 48-122 8-74 (82)
122 PF07975 C1_4: TFIIH C1-like d 72.4 2.8 6.1E-05 27.6 1.8 43 132-174 2-50 (51)
123 PF08114 PMP1_2: ATPase proteo 72.0 5.6 0.00012 24.9 2.9 28 56-83 10-37 (43)
124 KOG3899 Uncharacterized conser 71.8 2.1 4.6E-05 38.2 1.4 27 151-177 325-364 (381)
125 KOG3113 Uncharacterized conser 71.7 3.8 8.2E-05 35.9 2.9 50 129-180 111-160 (293)
126 KOG2817 Predicted E3 ubiquitin 71.2 3.4 7.3E-05 38.3 2.6 44 130-174 335-381 (394)
127 KOG3005 GIY-YIG type nuclease 70.5 2.5 5.4E-05 37.2 1.5 49 129-177 182-242 (276)
128 PF15176 LRR19-TM: Leucine-ric 70.4 7.7 0.00017 29.2 3.9 32 54-85 15-46 (102)
129 TIGR00622 ssl1 transcription f 70.0 6.3 0.00014 30.3 3.5 46 129-174 55-110 (112)
130 PF13908 Shisa: Wnt and FGF in 68.3 2.6 5.6E-05 34.6 1.2 11 56-66 78-88 (179)
131 PF15102 TMEM154: TMEM154 prot 68.2 1.9 4.1E-05 34.6 0.3 10 157-166 127-136 (146)
132 KOG2066 Vacuolar assembly/sort 67.1 2.2 4.7E-05 42.8 0.5 43 129-173 784-830 (846)
133 smart00249 PHD PHD zinc finger 66.6 4 8.7E-05 24.7 1.6 31 131-162 1-31 (47)
134 KOG4367 Predicted Zn-finger pr 65.7 2.8 6.1E-05 39.4 1.0 34 128-165 3-36 (699)
135 smart00132 LIM Zinc-binding do 65.4 6.4 0.00014 22.9 2.3 37 131-177 1-37 (39)
136 PF10571 UPF0547: Uncharacteri 64.2 4.6 0.0001 22.7 1.3 23 131-155 2-24 (26)
137 PRK01844 hypothetical protein; 64.2 19 0.0004 25.5 4.6 29 56-84 5-33 (72)
138 PF05568 ASFV_J13L: African sw 63.4 13 0.00029 29.9 4.2 6 11-16 4-9 (189)
139 PF00628 PHD: PHD-finger; Int 61.4 3.9 8.4E-05 26.1 0.8 43 131-174 1-49 (51)
140 KOG1815 Predicted E3 ubiquitin 61.3 5.2 0.00011 37.7 1.9 37 127-166 68-104 (444)
141 PF10717 ODV-E18: Occlusion-de 60.7 13 0.00029 26.9 3.5 22 50-71 20-41 (85)
142 PRK00523 hypothetical protein; 59.9 23 0.0005 25.0 4.4 28 56-83 6-33 (72)
143 PF10577 UPF0560: Uncharacteri 59.6 20 0.00044 36.2 5.7 23 57-79 273-295 (807)
144 PF08374 Protocadherin: Protoc 58.7 10 0.00022 32.4 3.0 9 29-37 17-25 (221)
145 PF06679 DUF1180: Protein of u 58.7 18 0.00039 29.6 4.4 30 53-82 90-119 (163)
146 PF02891 zf-MIZ: MIZ/SP-RING z 58.7 11 0.00025 24.4 2.6 41 131-175 4-49 (50)
147 KOG1812 Predicted E3 ubiquitin 57.9 4.6 9.9E-05 37.5 0.9 43 130-173 307-351 (384)
148 PF15330 SIT: SHP2-interacting 57.9 16 0.00036 27.7 3.8 21 58-78 2-22 (107)
149 PHA02657 hypothetical protein; 57.7 40 0.00087 24.6 5.5 32 44-75 16-47 (95)
150 PF01708 Gemini_mov: Geminivir 57.4 19 0.00041 26.5 3.8 31 48-78 30-60 (91)
151 KOG2807 RNA polymerase II tran 56.2 13 0.00027 33.9 3.3 68 107-175 307-375 (378)
152 PF13314 DUF4083: Domain of un 56.0 31 0.00067 23.3 4.4 16 70-85 20-35 (58)
153 PF07406 NICE-3: NICE-3 protei 55.2 15 0.00033 30.7 3.5 17 156-172 125-143 (186)
154 PF13719 zinc_ribbon_5: zinc-r 54.9 7.2 0.00016 23.6 1.1 26 131-156 4-36 (37)
155 PF05961 Chordopox_A13L: Chord 52.6 52 0.0011 22.9 5.2 22 64-85 6-27 (68)
156 PF15050 SCIMP: SCIMP protein 51.4 23 0.00049 27.6 3.6 28 61-88 10-38 (133)
157 TIGR01478 STEVOR variant surfa 50.5 23 0.00049 31.7 3.9 9 77-85 280-288 (295)
158 COG3763 Uncharacterized protei 50.5 42 0.00091 23.6 4.5 19 60-78 8-26 (71)
159 PF03229 Alpha_GJ: Alphavirus 50.3 84 0.0018 24.3 6.5 16 72-87 103-118 (126)
160 PTZ00370 STEVOR; Provisional 48.2 25 0.00053 31.5 3.8 9 77-85 276-284 (296)
161 PF11057 Cortexin: Cortexin of 48.1 65 0.0014 23.0 5.2 16 70-85 39-54 (81)
162 PF01363 FYVE: FYVE zinc finge 47.3 8.2 0.00018 26.3 0.6 35 129-163 9-43 (69)
163 cd00065 FYVE FYVE domain; Zinc 45.5 17 0.00038 23.5 2.0 35 130-164 3-37 (57)
164 PF13717 zinc_ribbon_4: zinc-r 45.5 11 0.00023 22.8 0.8 25 131-156 4-36 (36)
165 PF00412 LIM: LIM domain; Int 45.3 14 0.00031 23.8 1.5 39 132-180 1-39 (58)
166 KOG2068 MOT2 transcription fac 45.1 17 0.00037 33.0 2.4 48 130-178 250-298 (327)
167 PF06844 DUF1244: Protein of u 44.8 14 0.00031 25.6 1.4 12 154-165 11-22 (68)
168 PF15065 NCU-G1: Lysosomal tra 44.1 12 0.00027 34.3 1.4 38 48-85 311-348 (350)
169 PF01299 Lamp: Lysosome-associ 43.7 16 0.00035 32.6 2.1 17 68-84 282-298 (306)
170 PF14914 LRRC37AB_C: LRRC37A/B 42.6 48 0.001 26.7 4.3 13 53-65 118-130 (154)
171 PF05454 DAG1: Dystroglycan (D 40.9 9 0.0002 34.3 0.0 12 12-23 91-102 (290)
172 KOG3799 Rab3 effector RIM1 and 40.9 6.3 0.00014 31.3 -0.9 49 127-176 63-116 (169)
173 PF07649 C1_3: C1-like domain; 40.6 22 0.00048 20.2 1.6 29 131-160 2-30 (30)
174 PF06906 DUF1272: Protein of u 40.3 46 0.00099 22.4 3.3 46 130-180 6-54 (57)
175 PF04423 Rad50_zn_hook: Rad50 39.8 9.3 0.0002 25.0 -0.1 12 169-180 22-33 (54)
176 PHA03049 IMV membrane protein; 39.0 1.2E+02 0.0026 21.1 5.2 22 64-85 6-27 (68)
177 smart00064 FYVE Protein presen 38.9 29 0.00064 23.3 2.4 36 129-164 10-45 (68)
178 PHA03240 envelope glycoprotein 38.4 42 0.00091 28.8 3.6 28 55-82 213-240 (258)
179 PF04216 FdhE: Protein involve 37.3 4.4 9.5E-05 35.9 -2.6 47 129-176 172-220 (290)
180 PF07438 DUF1514: Protein of u 36.9 37 0.00081 23.4 2.5 15 56-70 1-15 (66)
181 PF02009 Rifin_STEVOR: Rifin/s 36.9 53 0.0011 29.6 4.2 13 73-85 271-283 (299)
182 PF02480 Herpes_gE: Alphaherpe 36.9 11 0.00025 35.6 0.0 35 50-84 349-383 (439)
183 TIGR01477 RIFIN variant surfac 36.2 43 0.00093 30.8 3.6 7 79-85 331-337 (353)
184 KOG2041 WD40 repeat protein [G 36.1 30 0.00064 35.0 2.7 48 126-177 1128-1184(1189)
185 PF13832 zf-HC5HC2H_2: PHD-zin 35.9 27 0.00058 25.9 1.9 34 129-163 55-88 (110)
186 KOG3039 Uncharacterized conser 35.9 21 0.00046 31.3 1.5 33 129-165 43-75 (303)
187 KOG2979 Protein involved in DN 35.7 23 0.0005 31.1 1.7 41 129-172 176-218 (262)
188 PF07204 Orthoreo_P10: Orthore 35.6 32 0.00069 25.6 2.1 29 56-84 41-69 (98)
189 KOG1729 FYVE finger containing 35.2 7.1 0.00015 34.9 -1.6 37 130-167 215-251 (288)
190 KOG3579 Predicted E3 ubiquitin 35.1 20 0.00044 32.0 1.2 40 129-168 268-307 (352)
191 cd00350 rubredoxin_like Rubred 35.1 21 0.00045 20.9 1.0 19 151-175 7-25 (33)
192 PF01299 Lamp: Lysosome-associ 33.9 29 0.00063 30.9 2.1 33 53-85 270-302 (306)
193 PF15145 DUF4577: Domain of un 33.5 1.1E+02 0.0023 23.7 4.7 19 97-115 95-113 (128)
194 PF04710 Pellino: Pellino; In 33.4 14 0.0003 34.4 0.0 44 129-176 277-337 (416)
195 PTZ00046 rifin; Provisional 33.4 47 0.001 30.6 3.4 7 79-85 336-342 (358)
196 PF11770 GAPT: GRB2-binding ad 33.0 13 0.00029 29.9 -0.2 24 55-78 9-32 (158)
197 PF04689 S1FA: DNA binding pro 33.0 45 0.00098 23.0 2.4 30 50-79 8-37 (69)
198 PF10497 zf-4CXXC_R1: Zinc-fin 32.1 56 0.0012 24.6 3.1 46 129-175 7-69 (105)
199 COG5627 MMS21 DNA repair prote 31.9 26 0.00056 30.5 1.3 40 129-171 189-230 (275)
200 PF06024 DUF912: Nucleopolyhed 31.6 23 0.00049 26.5 0.9 23 57-79 61-83 (101)
201 PF14311 DUF4379: Domain of un 31.3 31 0.00068 22.4 1.4 24 149-173 32-55 (55)
202 PF07219 HemY_N: HemY protein 31.0 77 0.0017 23.6 3.7 26 52-77 12-37 (108)
203 PF02060 ISK_Channel: Slow vol 30.7 1.4E+02 0.0031 23.4 5.2 7 10-16 14-20 (129)
204 PF06667 PspB: Phage shock pro 30.5 1E+02 0.0022 21.9 4.0 17 57-73 6-22 (75)
205 PLN02189 cellulose synthase 30.1 52 0.0011 34.5 3.4 50 129-178 34-87 (1040)
206 PF01034 Syndecan: Syndecan do 28.9 14 0.00031 25.4 -0.5 9 58-66 14-22 (64)
207 PF13771 zf-HC5HC2H: PHD-like 28.8 38 0.00083 24.0 1.7 33 129-162 36-68 (90)
208 PF06305 DUF1049: Protein of u 28.5 1.4E+02 0.003 19.9 4.4 9 57-65 23-31 (68)
209 PF06750 DiS_P_DiS: Bacterial 28.3 1.4E+02 0.003 21.9 4.6 37 130-179 34-70 (92)
210 PF15069 FAM163: FAM163 family 28.2 34 0.00073 27.4 1.4 8 167-174 91-98 (143)
211 KOG1245 Chromatin remodeling c 28.2 21 0.00046 38.7 0.3 49 128-177 1107-1159(1404)
212 PF02038 ATP1G1_PLM_MAT8: ATP1 28.1 63 0.0014 21.2 2.4 25 52-76 9-33 (50)
213 PF04478 Mid2: Mid2 like cell 28.0 7.6 0.00016 31.4 -2.4 29 55-83 49-77 (154)
214 KOG3842 Adaptor protein Pellin 27.5 70 0.0015 29.2 3.3 50 128-178 340-414 (429)
215 PF15048 OSTbeta: Organic solu 27.3 1.3E+02 0.0028 23.5 4.4 12 70-81 48-59 (125)
216 smart00647 IBR In Between Ring 27.2 18 0.0004 23.7 -0.3 19 145-163 40-58 (64)
217 KOG4443 Putative transcription 27.2 30 0.00064 34.3 1.0 29 150-178 40-73 (694)
218 PF05502 Dynactin_p62: Dynacti 27.2 31 0.00066 33.1 1.1 15 129-143 26-40 (483)
219 PF11446 DUF2897: Protein of u 26.7 85 0.0018 20.9 2.9 15 55-69 4-18 (55)
220 PRK14710 hypothetical protein; 26.5 44 0.00095 23.5 1.5 22 51-72 7-28 (86)
221 PF10083 DUF2321: Uncharacteri 26.5 33 0.00072 27.9 1.0 45 133-180 8-52 (158)
222 KOG1815 Predicted E3 ubiquitin 26.4 20 0.00043 33.8 -0.3 36 130-166 227-267 (444)
223 PF09943 DUF2175: Uncharacteri 26.4 53 0.0011 24.7 2.1 32 131-164 4-35 (101)
224 PF14569 zf-UDP: Zinc-binding 26.3 91 0.002 22.4 3.1 50 129-178 9-62 (80)
225 TIGR01195 oadG_fam sodium pump 26.2 1.5E+02 0.0033 21.2 4.4 19 67-85 19-37 (82)
226 PF09753 Use1: Membrane fusion 25.7 71 0.0015 27.6 3.1 7 72-78 243-249 (251)
227 PF06676 DUF1178: Protein of u 25.7 54 0.0012 26.4 2.1 25 151-180 10-45 (148)
228 PRK11827 hypothetical protein; 25.6 26 0.00056 23.8 0.2 20 161-180 2-21 (60)
229 PF11120 DUF2636: Protein of u 25.5 1.4E+02 0.003 20.5 3.8 21 61-81 9-29 (62)
230 PRK06287 cobalt transport prot 25.4 2.2E+02 0.0048 21.5 5.4 9 40-48 64-72 (107)
231 PF02723 NS3_envE: Non-structu 25.3 1.7E+02 0.0037 21.2 4.4 36 50-85 10-45 (82)
232 KOG1538 Uncharacterized conser 24.9 32 0.00068 34.5 0.8 33 145-177 1044-1076(1081)
233 KOG1512 PHD Zn-finger protein 24.9 33 0.00072 30.7 0.8 32 130-162 315-346 (381)
234 PF05568 ASFV_J13L: African sw 24.9 1.2E+02 0.0026 24.5 3.9 8 76-83 49-56 (189)
235 PF06667 PspB: Phage shock pro 24.8 1.6E+02 0.0035 20.9 4.2 23 58-80 4-26 (75)
236 PF05510 Sarcoglycan_2: Sarcog 24.7 1.3E+02 0.0029 28.0 4.8 30 52-82 281-311 (386)
237 PF00558 Vpu: Vpu protein; In 24.7 1E+02 0.0022 22.3 3.2 20 55-74 7-26 (81)
238 PLN02436 cellulose synthase A 24.6 74 0.0016 33.6 3.4 50 129-178 36-89 (1094)
239 PF14169 YdjO: Cold-inducible 24.5 39 0.00085 22.9 0.9 14 167-180 39-52 (59)
240 TIGR01562 FdhE formate dehydro 24.3 19 0.00042 32.4 -0.7 41 129-175 184-232 (305)
241 KOG2071 mRNA cleavage and poly 24.3 43 0.00093 32.8 1.5 34 128-163 512-556 (579)
242 PF07245 Phlebovirus_G2: Phleb 24.2 1.2E+02 0.0025 29.5 4.5 22 59-80 473-494 (507)
243 PTZ00046 rifin; Provisional 23.6 1.3E+02 0.0028 27.8 4.4 14 71-84 332-345 (358)
244 TIGR01477 RIFIN variant surfac 23.6 1.3E+02 0.0028 27.7 4.4 14 71-84 327-340 (353)
245 PRK14762 membrane protein; Pro 23.5 1.5E+02 0.0032 16.6 3.4 17 56-72 5-21 (27)
246 KOG2678 Predicted membrane pro 23.5 1.2E+02 0.0026 26.2 3.9 24 57-80 217-240 (244)
247 PRK11486 flagellar biosynthesi 23.4 2.6E+02 0.0057 21.8 5.5 6 79-84 37-42 (124)
248 PLN02638 cellulose synthase A 23.4 55 0.0012 34.5 2.2 50 129-178 17-70 (1079)
249 PF15179 Myc_target_1: Myc tar 23.2 1.6E+02 0.0034 24.8 4.4 23 60-83 27-49 (197)
250 COG3492 Uncharacterized protei 23.1 43 0.00092 24.8 1.0 13 154-166 42-54 (104)
251 PRK11088 rrmA 23S rRNA methylt 22.7 54 0.0012 28.4 1.8 26 130-156 3-28 (272)
252 PF03119 DNA_ligase_ZBD: NAD-d 22.6 39 0.00084 19.2 0.6 12 169-180 1-12 (28)
253 PF06937 EURL: EURL protein; 22.5 75 0.0016 28.2 2.5 21 154-174 56-77 (285)
254 COG3357 Predicted transcriptio 22.4 38 0.00083 25.1 0.6 28 150-181 63-90 (97)
255 PF09753 Use1: Membrane fusion 22.2 75 0.0016 27.4 2.6 18 57-74 231-248 (251)
256 COG1545 Predicted nucleic-acid 22.1 42 0.00092 26.5 0.9 21 149-177 33-53 (140)
257 KOG0956 PHD finger protein AF1 22.1 49 0.0011 33.2 1.5 52 128-180 116-184 (900)
258 KOG3726 Uncharacterized conser 22.0 50 0.0011 33.0 1.5 40 130-173 655-695 (717)
259 PF09723 Zn-ribbon_8: Zinc rib 22.0 19 0.00042 22.3 -0.9 25 150-175 10-34 (42)
260 COG5109 Uncharacterized conser 21.9 69 0.0015 29.2 2.2 43 130-173 337-382 (396)
261 PHA02947 S-S bond formation pa 21.7 1.1E+02 0.0024 26.1 3.4 29 52-80 175-203 (215)
262 PF05605 zf-Di19: Drought indu 21.7 21 0.00045 23.2 -0.8 12 130-141 3-14 (54)
263 PF07191 zinc-ribbons_6: zinc- 21.5 32 0.00069 24.2 0.1 42 130-180 2-43 (70)
264 PF07406 NICE-3: NICE-3 protei 21.4 1.5E+02 0.0033 24.7 4.1 19 62-80 17-35 (186)
265 PF07010 Endomucin: Endomucin; 21.2 1.7E+02 0.0038 25.4 4.4 26 60-85 191-216 (259)
266 KOG3653 Transforming growth fa 21.2 2.4E+02 0.0052 27.3 5.7 12 157-168 292-303 (534)
267 PRK03564 formate dehydrogenase 21.1 73 0.0016 28.8 2.3 42 128-175 186-234 (309)
268 KOG4218 Nuclear hormone recept 21.0 71 0.0015 29.5 2.1 47 128-175 14-75 (475)
269 KOG0824 Predicted E3 ubiquitin 21.0 33 0.00072 30.9 0.1 49 127-178 103-151 (324)
270 PF03911 Sec61_beta: Sec61beta 20.9 1.3E+02 0.0027 18.7 2.7 22 50-71 16-37 (41)
271 PF03107 C1_2: C1 domain; Int 20.7 61 0.0013 18.4 1.1 28 131-159 2-29 (30)
272 PHA03283 envelope glycoprotein 20.6 1.7E+02 0.0037 28.4 4.7 11 58-68 401-411 (542)
273 KOG4185 Predicted E3 ubiquitin 20.6 18 0.00039 31.9 -1.7 49 129-177 207-266 (296)
274 PF14316 DUF4381: Domain of un 20.6 1.3E+02 0.0029 23.6 3.5 11 106-116 77-87 (146)
275 KOG4323 Polycomb-like PHD Zn-f 20.1 56 0.0012 31.2 1.4 48 129-176 168-224 (464)
276 PF15353 HECA: Headcase protei 20.1 66 0.0014 24.5 1.5 13 151-163 40-52 (107)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.2e-19 Score=162.32 Aligned_cols=77 Identities=35% Similarity=0.812 Sum_probs=66.4
Q ss_pred HhcCCCHHHHhhCCceecccccCCCCCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCC-CCcccccccccc
Q 026797 102 INKGINKKALKAFPVVKYSAELKLPGLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS-SCPKCRHCLIET 180 (233)
Q Consensus 102 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~ 180 (233)
...++.++.++++|...|....+.... +.|+||||+|+.|+++|+|| |+|.||..|||+||.... .||+|++.+...
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 456678899999999999886554433 69999999999999999999 999999999999997775 599999977654
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.57 E-value=7.7e-16 Score=99.01 Aligned_cols=44 Identities=57% Similarity=1.250 Sum_probs=40.3
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCR 174 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 174 (233)
++|+||+++|..++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999989999999 999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.35 E-value=8.3e-13 Score=113.64 Aligned_cols=77 Identities=35% Similarity=0.625 Sum_probs=57.8
Q ss_pred hcCCCHHHHhhCCceecccccC-CCCCCCcccccccccccCce----eeecCCCCCccchhHHHHHHhcCCCCccccccc
Q 026797 103 NKGINKKALKAFPVVKYSAELK-LPGLDAECVICLSDFALGER----VRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCL 177 (233)
Q Consensus 103 ~~~~~~~~~~~lp~~~~~~~~~-~~~~~~~C~ICl~~~~~~~~----~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 177 (233)
.++..+..++.+|.+....... ....+.+|+||++.+..++. +.+++.|+|.||..||..|+..+.+||+||..+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 4556788889999886543221 22346899999999876431 234445999999999999999999999999987
Q ss_pred cc
Q 026797 178 IE 179 (233)
Q Consensus 178 ~~ 179 (233)
..
T Consensus 227 ~~ 228 (238)
T PHA02929 227 IS 228 (238)
T ss_pred eE
Confidence 54
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.9e-13 Score=116.67 Aligned_cols=51 Identities=45% Similarity=1.132 Sum_probs=46.1
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHh-cCCCCccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-SNSSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~ 179 (233)
.+-+|+|||++|..+++++++| |+|.||..|+++|+. -+..||+||..+++
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3578999999999999999999 999999999999998 55679999998764
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.5e-12 Score=114.92 Aligned_cols=69 Identities=30% Similarity=0.730 Sum_probs=52.0
Q ss_pred HHHHhhCCceecccccCCCCCCCcccccccc-cccC---------ceeeecCCCCCccchhHHHHHHhcCCCCccccccc
Q 026797 108 KKALKAFPVVKYSAELKLPGLDAECVICLSD-FALG---------ERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCL 177 (233)
Q Consensus 108 ~~~~~~lp~~~~~~~~~~~~~~~~C~ICl~~-~~~~---------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 177 (233)
|+.-+.+|++.. ++....|..|.||+++ |..+ .+.+.+| |||+||.+|++.|+.++++||+||.++
T Consensus 269 kdl~~~~~t~t~---eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 269 KDLNAMYPTATE---EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred hHHHhhcchhhh---hhhcCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcc
Confidence 333444555432 3445678899999999 5443 2447788 999999999999999999999999996
Q ss_pred ccc
Q 026797 178 IET 180 (233)
Q Consensus 178 ~~~ 180 (233)
.-+
T Consensus 345 ifd 347 (491)
T COG5243 345 IFD 347 (491)
T ss_pred ccc
Confidence 544
No 6
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.33 E-value=9.4e-13 Score=93.81 Aligned_cols=46 Identities=39% Similarity=0.939 Sum_probs=36.0
Q ss_pred CCCcccccccccccC----------ceeeecCCCCCccchhHHHHHHhcCCCCcccc
Q 026797 128 LDAECVICLSDFALG----------ERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCR 174 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~----------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 174 (233)
.++.|+||+++|.+. -.+...+ |||.||..||..||+.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 356799999999322 2334445 999999999999999999999998
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.2e-10 Score=101.39 Aligned_cols=50 Identities=30% Similarity=0.725 Sum_probs=42.7
Q ss_pred CCCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 126 PGLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 126 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
......|.+||+...+ ...+| |||+||+.||..|...+..||+||....+
T Consensus 236 ~~a~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCC
Confidence 3456789999999765 56678 99999999999999999999999997644
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.01 E-value=4.8e-10 Score=93.26 Aligned_cols=50 Identities=32% Similarity=0.706 Sum_probs=39.9
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhc----------------CCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS----------------NSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----------------~~~CP~CR~~l~~~ 180 (233)
+.+.+|+||++.+++ ..+++ |||.||+.||..|+.. ...||+||..+...
T Consensus 16 ~~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 345789999999865 34566 9999999999999852 24799999988654
No 9
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.00 E-value=3.4e-10 Score=71.35 Aligned_cols=44 Identities=55% Similarity=1.220 Sum_probs=36.5
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHhc-CCCCccccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS-NSSCPKCRHCL 177 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l 177 (233)
+|+||++.+ .+.....+ |+|.||..|++.|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 34455666 9999999999999987 67899998753
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.00 E-value=2.6e-10 Score=75.14 Aligned_cols=46 Identities=41% Similarity=0.873 Sum_probs=39.1
Q ss_pred CCcccccccccccCceeeecCCCCCc-cchhHHHHHHhcCCCCcccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHG-FHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
+..|.||++...+ +..+| |||. |+..|+..|+.....||+||..+.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999998654 77788 9999 999999999999999999999874
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.94 E-value=5.4e-10 Score=69.82 Aligned_cols=39 Identities=41% Similarity=1.057 Sum_probs=32.7
Q ss_pred ccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccc
Q 026797 132 CVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKC 173 (233)
Q Consensus 132 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 173 (233)
|+||++.+.+ .+..++ |||.|+.+|+..|++.+.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999876 446677 99999999999999998899998
No 12
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.94 E-value=6.3e-10 Score=80.75 Aligned_cols=51 Identities=37% Similarity=0.831 Sum_probs=38.7
Q ss_pred CCCccccccccccc--------Cce-eeecCCCCCccchhHHHHHHhc---CCCCcccccccc
Q 026797 128 LDAECVICLSDFAL--------GER-VRLLPKCNHGFHVRCIDRWLRS---NSSCPKCRHCLI 178 (233)
Q Consensus 128 ~~~~C~ICl~~~~~--------~~~-~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~l~ 178 (233)
.++.|.||...|.. |+. ..+...|+|.||..||.+|+.. +..||+||+...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 36889999999872 222 2234469999999999999975 457999999753
No 13
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.1e-09 Score=103.19 Aligned_cols=51 Identities=37% Similarity=0.983 Sum_probs=44.8
Q ss_pred CCCcccccccccccCce--eeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 128 LDAECVICLSDFALGER--VRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~--~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
.+..|+||+|++..+.. .+.++ |+|+||..|+..|+++.++||.||..+..
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 46899999999988765 67888 99999999999999999999999994443
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.2e-09 Score=89.05 Aligned_cols=51 Identities=29% Similarity=0.655 Sum_probs=41.6
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
.-..|+|||+.+..... +-.+|||+||..||..-++....||+||..|...
T Consensus 130 ~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 34789999999976433 3336999999999999999999999999876543
No 15
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.6e-09 Score=90.56 Aligned_cols=51 Identities=27% Similarity=0.563 Sum_probs=40.1
Q ss_pred CCCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC---CCCcccccccccc
Q 026797 126 PGLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN---SSCPKCRHCLIET 180 (233)
Q Consensus 126 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~l~~~ 180 (233)
.+...+|.|||+.-++ ..++. |||.||+.||.+||..+ +.||+|+..+..+
T Consensus 44 ~~~~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 4566899999998654 34555 99999999999999654 4599999877654
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.83 E-value=2.2e-09 Score=90.65 Aligned_cols=52 Identities=35% Similarity=0.760 Sum_probs=39.0
Q ss_pred CCCCcccccccccccC----c-eeeecCCCCCccchhHHHHHHhcC------CCCcccccccc
Q 026797 127 GLDAECVICLSDFALG----E-RVRLLPKCNHGFHVRCIDRWLRSN------SSCPKCRHCLI 178 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~----~-~~~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~CR~~l~ 178 (233)
..+.+|+||||..-.. + .-.+|+.|+|.||..||..|...+ .+||+||....
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3468999999986432 1 233565699999999999998643 35999999754
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.79 E-value=4.3e-09 Score=67.54 Aligned_cols=44 Identities=32% Similarity=0.826 Sum_probs=37.7
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRH 175 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 175 (233)
.|.||+++|......++++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666777887 9999999999999856678999985
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.70 E-value=8.5e-09 Score=64.80 Aligned_cols=39 Identities=44% Similarity=1.087 Sum_probs=32.8
Q ss_pred ccccccccccCceeeecCCCCCccchhHHHHHHh--cCCCCccc
Q 026797 132 CVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR--SNSSCPKC 173 (233)
Q Consensus 132 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~C 173 (233)
|+||++.+.... ++++ |||.|+..|+..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987643 5677 999999999999998 45579998
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.70 E-value=1.3e-08 Score=61.76 Aligned_cols=38 Identities=45% Similarity=1.216 Sum_probs=32.0
Q ss_pred ccccccccccCceeeecCCCCCccchhHHHHHHh-cCCCCccc
Q 026797 132 CVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-SNSSCPKC 173 (233)
Q Consensus 132 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~C 173 (233)
|+||++.. .....++ |+|.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999883 3466777 999999999999998 56679987
No 20
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.62 E-value=2.3e-08 Score=71.16 Aligned_cols=49 Identities=35% Similarity=0.814 Sum_probs=36.9
Q ss_pred Ccccccccccc-----------cCceee-ecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 130 AECVICLSDFA-----------LGERVR-LLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~-----------~~~~~~-~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
+.|+||...|. .++... .-..|+|.||..||..||..+..||++|+...
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 56777766653 334332 22359999999999999999999999998754
No 21
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.60 E-value=3e-08 Score=63.04 Aligned_cols=38 Identities=42% Similarity=0.958 Sum_probs=28.5
Q ss_pred ccccccccccCceeeecCCCCCccchhHHHHHHhcC----CCCccc
Q 026797 132 CVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN----SSCPKC 173 (233)
Q Consensus 132 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~C 173 (233)
|+||++-|.+ ...++ |||.|+..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999976 55677 99999999999998654 359987
No 22
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.55 E-value=2.9e-08 Score=91.09 Aligned_cols=72 Identities=28% Similarity=0.610 Sum_probs=54.8
Q ss_pred CCCcccccccccccCc-eeeecCCCCCccchhHHHHHHhcCCCCccccccccccccccccCcccccccccCCCCCCCCcc
Q 026797 128 LDAECVICLSDFALGE-RVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIETCEKIVGCSQQQASSLASSTAPVQETV 206 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (233)
+-.+|+||||.+.... .++... |+|.||..|+..| ...+||+||+...+. ...+..+..+...+++
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~p~----------~ve~~~c~~c~~~~~L 240 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQSPS----------VVESSLCLACGCTEDL 240 (493)
T ss_pred cCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcCcc----------hhhhhhhhhhcccccE
Confidence 3478999999998765 344444 9999999999999 778999999986422 1223345678888999
Q ss_pred eeeecC
Q 026797 207 VISIVP 212 (233)
Q Consensus 207 ~~~i~p 212 (233)
|+++.-
T Consensus 241 wicliC 246 (493)
T KOG0804|consen 241 WICLIC 246 (493)
T ss_pred EEEEEc
Confidence 998764
No 23
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.53 E-value=9.2e-08 Score=65.36 Aligned_cols=45 Identities=27% Similarity=0.451 Sum_probs=38.8
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..|+||.+.+.+. .+++ |||+|+..||..|+..+.+||+|+..+.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 4699999998763 4567 9999999999999988889999998763
No 24
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.6e-07 Score=87.07 Aligned_cols=50 Identities=36% Similarity=0.878 Sum_probs=38.8
Q ss_pred CCcccccccccccC---c-----------eeeecCCCCCccchhHHHHHHhcCC-CCccccccccc
Q 026797 129 DAECVICLSDFALG---E-----------RVRLLPKCNHGFHVRCIDRWLRSNS-SCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~---~-----------~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~ 179 (233)
..+|+||+.++.-- . .-.++| |+|+||..|+..|+...+ .||+||.++.+
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 36799999986421 1 123568 999999999999998555 89999998854
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=1.2e-07 Score=87.34 Aligned_cols=48 Identities=35% Similarity=0.672 Sum_probs=40.8
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
....|+||++.|.. ..+++ |+|.||..||..|+.....||+||..+..
T Consensus 25 ~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 45789999999865 33567 99999999999999888889999997654
No 26
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.9e-08 Score=70.07 Aligned_cols=50 Identities=36% Similarity=0.819 Sum_probs=36.7
Q ss_pred CCCccccccccccc--------Cce-eeecCCCCCccchhHHHHHHhcC---CCCccccccc
Q 026797 128 LDAECVICLSDFAL--------GER-VRLLPKCNHGFHVRCIDRWLRSN---SSCPKCRHCL 177 (233)
Q Consensus 128 ~~~~C~ICl~~~~~--------~~~-~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~l 177 (233)
.++.|-||.-.|.. +|. ..++..|.|.||..||.+|+... ..||+||+..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 34589999888863 232 22344699999999999999643 4699999864
No 27
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.6e-07 Score=81.27 Aligned_cols=50 Identities=30% Similarity=0.714 Sum_probs=40.4
Q ss_pred CCCCcccccccccccCc-------eeeecCCCCCccchhHHHHHH--hcCCCCccccccc
Q 026797 127 GLDAECVICLSDFALGE-------RVRLLPKCNHGFHVRCIDRWL--RSNSSCPKCRHCL 177 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~-------~~~~lp~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~l 177 (233)
.++..|+||-..+.... +.-.|. |+|+||..||.-|- .++++||-|+..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHh
Confidence 45789999988876544 455676 99999999999994 5677999998754
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.2e-07 Score=80.25 Aligned_cols=50 Identities=28% Similarity=0.703 Sum_probs=40.5
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHH-HHhcCCC-Ccccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDR-WLRSNSS-CPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~-Wl~~~~~-CP~CR~~l~~~ 180 (233)
..+..|+||++.... ...++ |||+||..||.. |-.++.- ||+||+...+.
T Consensus 213 ~~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 346889999998654 55667 999999999999 9766665 99999987654
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.26 E-value=7.5e-07 Score=58.49 Aligned_cols=42 Identities=26% Similarity=0.775 Sum_probs=32.0
Q ss_pred cccccccccccCceeeecCCCC-----CccchhHHHHHHhcC--CCCcccc
Q 026797 131 ECVICLSDFALGERVRLLPKCN-----HGFHVRCIDRWLRSN--SSCPKCR 174 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR 174 (233)
.|.||++... ++...+.| |. |.+|..|+..|+... .+||+|+
T Consensus 1 ~CrIC~~~~~-~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899999433 34445778 75 899999999999544 4899995
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.23 E-value=7.4e-07 Score=56.89 Aligned_cols=34 Identities=32% Similarity=0.774 Sum_probs=21.5
Q ss_pred ccccccccccCc-eeeecCCCCCccchhHHHHHHhcC
Q 026797 132 CVICLSDFALGE-RVRLLPKCNHGFHVRCIDRWLRSN 167 (233)
Q Consensus 132 C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~ 167 (233)
|+||++ |...+ ...+|+ |||.|+.+|+..|+...
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 75544 557798 99999999999998743
No 31
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.1e-07 Score=66.96 Aligned_cols=49 Identities=33% Similarity=0.716 Sum_probs=36.7
Q ss_pred CCcccccccccc-------------cCceeeecCCCCCccchhHHHHHHhcCCCCccccccc
Q 026797 129 DAECVICLSDFA-------------LGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCL 177 (233)
Q Consensus 129 ~~~C~ICl~~~~-------------~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 177 (233)
-+.|+||...+- .++-...-..|+|.||..||..||+.++.||+|.+..
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 368999976642 1222223335999999999999999999999997654
No 32
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=9.8e-07 Score=82.45 Aligned_cols=47 Identities=32% Similarity=0.627 Sum_probs=36.7
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhc-----CCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS-----NSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~l~~ 179 (233)
+..|+|||+.... ...+. |||+||..||-.++.. ...||+||..|..
T Consensus 186 ~~~CPICL~~~~~---p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCc---ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 6789999998654 22333 9999999999887743 3469999998765
No 33
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.07 E-value=3.1e-06 Score=75.41 Aligned_cols=51 Identities=25% Similarity=0.625 Sum_probs=37.0
Q ss_pred CCcccccccc-cccCc-eeeecCCCCCccchhHHHHHH-hcCCCCcccccccccc
Q 026797 129 DAECVICLSD-FALGE-RVRLLPKCNHGFHVRCIDRWL-RSNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~-~~~~~-~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~~~ 180 (233)
+..|++|..+ +-..+ ++.+.+ |||.||..|++..+ .....||.|+..+-..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 4679999997 33323 333445 99999999999965 4455799999877544
No 34
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.01 E-value=1.5e-06 Score=85.90 Aligned_cols=50 Identities=36% Similarity=0.900 Sum_probs=37.1
Q ss_pred CCcccccccccccCce---eeecCCCCCccchhHHHHHHhc--CCCCcccccccc
Q 026797 129 DAECVICLSDFALGER---VRLLPKCNHGFHVRCIDRWLRS--NSSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~---~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~ 178 (233)
..+|+||+.-+..-+. -...+.|.|-||..|+.+|++. +++||+||..+.
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4789999988752221 1223459999999999999964 557999997653
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.01 E-value=1.6e-06 Score=61.15 Aligned_cols=50 Identities=34% Similarity=0.753 Sum_probs=23.0
Q ss_pred CCcccccccccc-cCce-eeec--CCCCCccchhHHHHHHhc----C-------CCCcccccccc
Q 026797 129 DAECVICLSDFA-LGER-VRLL--PKCNHGFHVRCIDRWLRS----N-------SSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~-~~~~-~~~l--p~C~H~FH~~Ci~~Wl~~----~-------~~CP~CR~~l~ 178 (233)
+.+|.||++.+. .++. ..+- +.|++.||..|+.+||.. + ..||.|+..|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 357999999876 3322 2222 269999999999999852 1 14999998763
No 36
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=3.8e-06 Score=75.49 Aligned_cols=50 Identities=34% Similarity=0.672 Sum_probs=42.2
Q ss_pred CCCCcccccccccccCceeeecCCCCC-ccchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNH-GFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H-~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
++..+|.|||++-.+ +.+|| |.| ..|..|.+.--.+++.||+||+++.+.
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 346799999999766 78999 999 688999998766788899999998765
No 37
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3.8e-06 Score=72.25 Aligned_cols=44 Identities=41% Similarity=0.831 Sum_probs=38.3
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCR 174 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 174 (233)
.....|+||++.|... .+++ |+|.|+..|+..|......||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 3457899999999886 7788 999999999999987556799999
No 38
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.90 E-value=4.1e-06 Score=74.80 Aligned_cols=47 Identities=32% Similarity=0.810 Sum_probs=41.5
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..|-||.+-|.. ..++| |+|.||.-||..+|..+..||.|+..+.+.
T Consensus 24 LRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 24 LRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence 579999999976 55678 999999999999999999999999877654
No 39
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=4.9e-06 Score=75.41 Aligned_cols=46 Identities=30% Similarity=0.858 Sum_probs=33.5
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcC---CCCccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN---SSCPKCRH 175 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~ 175 (233)
..|.||.+-+.....+.-...|||+||..|+..|+..- ..||.|+-
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 57999944444333443333599999999999999753 47999993
No 40
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.83 E-value=8.8e-06 Score=71.36 Aligned_cols=45 Identities=31% Similarity=0.634 Sum_probs=38.2
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..|-||-+.|.. ...++ |||.||.-||...|..+..||+||...-
T Consensus 26 lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 26 LRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHH
Confidence 679999988764 23445 9999999999999999999999998644
No 41
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.82 E-value=1.4e-05 Score=56.67 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=36.1
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhc-CCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS-NSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 180 (233)
+..|+|+.+-|.+ ..+++ +||.|...||..|+.. +.+||+|+..+...
T Consensus 4 ~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 3579999999976 45667 9999999999999988 78999998877543
No 42
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=3e-05 Score=70.80 Aligned_cols=48 Identities=31% Similarity=0.828 Sum_probs=36.9
Q ss_pred CCccccccccccc-CceeeecCCCCCccchhHHHHHHhc--CCCCcccccc
Q 026797 129 DAECVICLSDFAL-GERVRLLPKCNHGFHVRCIDRWLRS--NSSCPKCRHC 176 (233)
Q Consensus 129 ~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~ 176 (233)
...|+|||+.+.. +++..+.+.|||.|-.+||..||.+ ...||.|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 4689999999764 4554455569999999999999952 2359999653
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.64 E-value=1.1e-05 Score=55.46 Aligned_cols=46 Identities=30% Similarity=0.589 Sum_probs=22.8
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
-.|++|.+-+++. + .+.+|.|+|+..||..-+. ..||+|+.+-...
T Consensus 8 LrCs~C~~~l~~p--v-~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q 53 (65)
T PF14835_consen 8 LRCSICFDILKEP--V-CLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ 53 (65)
T ss_dssp TS-SSS-S--SS---B----SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred cCCcHHHHHhcCC--c-eeccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence 4699999988652 3 3345999999999988544 3599998876544
No 44
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.60 E-value=1.4e-05 Score=77.96 Aligned_cols=49 Identities=24% Similarity=0.420 Sum_probs=40.8
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
..|++|+..+.++......+ |+|.||..||+.|-+..++||+||..+..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 56889988887766555555 99999999999999999999999986543
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=4.1e-05 Score=69.47 Aligned_cols=51 Identities=37% Similarity=0.876 Sum_probs=39.0
Q ss_pred CCCCcccccccccccCc----eeeecCCCCCccchhHHHHHH--hc-----CCCCccccccc
Q 026797 127 GLDAECVICLSDFALGE----RVRLLPKCNHGFHVRCIDRWL--RS-----NSSCPKCRHCL 177 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~Ci~~Wl--~~-----~~~CP~CR~~l 177 (233)
..+.+|.||++...... .-.++|.|.|.|+..||+.|- .+ .+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 34689999999876533 124557799999999999996 33 36799999854
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.54 E-value=2.1e-05 Score=69.25 Aligned_cols=50 Identities=34% Similarity=0.808 Sum_probs=41.8
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHh-----------------------cCCCCcccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-----------------------SNSSCPKCRHCLIET 180 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----------------------~~~~CP~CR~~l~~~ 180 (233)
..|.|||--|.+++...+++ |.|.||..|+..+|. ....||+||..|..+
T Consensus 116 gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 57999999999999888888 999999999977663 112599999988755
No 47
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=6.2e-05 Score=63.91 Aligned_cols=54 Identities=26% Similarity=0.703 Sum_probs=44.8
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhc--------CCCCcccccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS--------NSSCPKCRHCLIETCE 182 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~l~~~~~ 182 (233)
..+..|..|-..+..++.+|+. |-|+||+.|+++|-.. ...||.|...|++...
T Consensus 48 DY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred CCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 4457899999999999998874 9999999999999642 2369999999987643
No 48
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=1.6e-05 Score=71.42 Aligned_cols=50 Identities=36% Similarity=0.715 Sum_probs=40.5
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHh-cCCCCcccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-SNSSCPKCRHCLIET 180 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 180 (233)
.+..|+|||+-++. .+..+.|.|-||.+||..-++ .++.||.||+.+...
T Consensus 42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 35789999998865 445557999999999998885 567899999987654
No 49
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.26 E-value=0.00019 Score=65.66 Aligned_cols=48 Identities=31% Similarity=0.760 Sum_probs=38.8
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhc--CCCCccccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS--NSSCPKCRHCLIETC 181 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~~~~ 181 (233)
.-|-||-|. +..+++-| |||..|..|+..|-.. .++||.||..|-..+
T Consensus 370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 459999776 34588889 9999999999999633 568999999876543
No 50
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00011 Score=48.81 Aligned_cols=47 Identities=26% Similarity=0.486 Sum_probs=32.1
Q ss_pred CCcccccccccccCceeeecCCCCCc-cchhHH-HHHHhcCCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHG-FHVRCI-DRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci-~~Wl~~~~~CP~CR~~l~~ 179 (233)
+++|.||+|.-.+ -.+.. |||. .+..|- ..|-..+..||+||.++-+
T Consensus 7 ~dECTICye~pvd---sVlYt-CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVD---SVLYT-CGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcch---HHHHH-cchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 4899999987443 22333 9995 455664 4444467889999998754
No 51
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00015 Score=65.47 Aligned_cols=44 Identities=27% Similarity=0.581 Sum_probs=33.3
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..+.|.||+++..+ ...+| |||.=+ |...-. ...+||+||+.|-
T Consensus 304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~-~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSK-HLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccc---eeeec-CCcEEE--chHHHh-hCCCCchhHHHHH
Confidence 34789999999876 67788 999944 776653 3345999999764
No 52
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00021 Score=63.11 Aligned_cols=48 Identities=29% Similarity=0.546 Sum_probs=37.8
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhc-CCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS-NSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 180 (233)
..+|+||+....- ...++ |+|.|+.-||.--... ..+|++||.++.+.
T Consensus 7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 4689999988544 35566 9999999999877654 44699999988754
No 53
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.01 E-value=0.00046 Score=71.40 Aligned_cols=64 Identities=27% Similarity=0.604 Sum_probs=46.8
Q ss_pred CCceecccccCCCCCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC----------CCCcccccccc
Q 026797 114 FPVVKYSAELKLPGLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN----------SSCPKCRHCLI 178 (233)
Q Consensus 114 lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----------~~CP~CR~~l~ 178 (233)
+|-.....+......++.|.||..+--.....+.|. |+|+||.+|...-|.++ .+||+|+..|.
T Consensus 3471 LPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3471 LPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 455554444444566889999998866666777887 99999999987655432 26999998764
No 54
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.00 E-value=0.00023 Score=56.09 Aligned_cols=35 Identities=26% Similarity=0.564 Sum_probs=30.3
Q ss_pred CCcccccccccccCceeeecCCCC------CccchhHHHHHH
Q 026797 129 DAECVICLSDFALGERVRLLPKCN------HGFHVRCIDRWL 164 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~------H~FH~~Ci~~Wl 164 (233)
..+|.||++.+.+++.+..++ || |.||.+|+..|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 478999999999867777777 75 899999999994
No 55
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0024 Score=57.11 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=38.4
Q ss_pred CCCCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccc
Q 026797 125 LPGLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHC 176 (233)
Q Consensus 125 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 176 (233)
.+.....|++|+...+++..+.+ -|-+||..||-..+.+++.||+=-.+
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~v---SGyVfCY~Ci~~Yv~~~~~CPVT~~p 344 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEV---SGYVFCYPCIFSYVVNYGHCPVTGYP 344 (357)
T ss_pred CCCccccChhHHhccCCCceEEe---cceEEeHHHHHHHHHhcCCCCccCCc
Confidence 34556789999998876443322 68999999999999999999986444
No 56
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00031 Score=68.68 Aligned_cols=45 Identities=24% Similarity=0.666 Sum_probs=34.9
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHh-cCCCCcccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-SNSSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~ 178 (233)
-.|++|-+..++ +.+. +|+|+||..|+..-+. ++..||.|-....
T Consensus 644 LkCs~Cn~R~Kd---~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 644 LKCSVCNTRWKD---AVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred eeCCCccCchhh---HHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 579999876654 3344 4999999999999985 5567999977653
No 57
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.83 E-value=0.00075 Score=62.58 Aligned_cols=51 Identities=27% Similarity=0.587 Sum_probs=41.6
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..+..|++|...+.+.-.. .. |||.|+..|+..|+..+..||.|+..+...
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~~-cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--TT-CGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccccCccccccccCCCCC--CC-CCCcccccccchhhccCcCCcccccccchh
Confidence 4567899999998764332 34 999999999999999999999998876644
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.82 E-value=0.0004 Score=63.36 Aligned_cols=46 Identities=43% Similarity=1.006 Sum_probs=37.5
Q ss_pred CCcccccccccccC-ceeeecCCCCCccchhHHHHHHhcC--CCCccccc
Q 026797 129 DAECVICLSDFALG-ERVRLLPKCNHGFHVRCIDRWLRSN--SSCPKCRH 175 (233)
Q Consensus 129 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~ 175 (233)
+..|..|-+.+... +.+.-+| |.|+||..|+.+.|.++ .+||.||.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45799998887543 4667789 99999999999999655 47999994
No 59
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.74 E-value=0.00084 Score=45.40 Aligned_cols=41 Identities=27% Similarity=0.585 Sum_probs=27.1
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhc--CCCCcc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS--NSSCPK 172 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~ 172 (233)
...|+|.+..|++ .++-.. |+|.|-++.|..|+.+ ...||+
T Consensus 11 ~~~CPiT~~~~~~--PV~s~~-C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFED--PVKSKK-CGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SS--EEEESS-S--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhC--CcCcCC-CCCeecHHHHHHHHHhcCCCCCCC
Confidence 4689999999875 355444 9999999999999943 336998
No 60
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0012 Score=61.25 Aligned_cols=50 Identities=34% Similarity=0.795 Sum_probs=41.6
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..+.+|.||+.-+.. ...+| |||.|+..||+.-+....-||.||..+.+.
T Consensus 82 ~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCcccccccccc
Confidence 456899999888765 55668 999999999999777777899999998864
No 61
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.001 Score=53.91 Aligned_cols=41 Identities=37% Similarity=0.794 Sum_probs=31.1
Q ss_pred CceecccccCCCCCCCcccccccccccCceeeecCCCCCccch
Q 026797 115 PVVKYSAELKLPGLDAECVICLSDFALGERVRLLPKCNHGFHV 157 (233)
Q Consensus 115 p~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~ 157 (233)
|.+.|.+.. +.....+|.||||++..++.+..|| |-.+||+
T Consensus 164 PrlsYNdDV-L~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDDV-LKDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccccccch-hcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 444444321 2234578999999999999999999 9999996
No 62
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.33 E-value=0.0016 Score=64.42 Aligned_cols=50 Identities=34% Similarity=0.779 Sum_probs=39.5
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC-------CCCcccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN-------SSCPKCRHC 176 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-------~~CP~CR~~ 176 (233)
....+|.||++.+...+.+.--..|-|+||..||..|-... -.||.|...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 44589999999998877666555699999999999997432 159999843
No 63
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.08 E-value=0.004 Score=40.36 Aligned_cols=41 Identities=37% Similarity=0.910 Sum_probs=26.1
Q ss_pred ccccccccccCceeeecC-CCCC---ccchhHHHHHHh--cCCCCccc
Q 026797 132 CVICLSDFALGERVRLLP-KCNH---GFHVRCIDRWLR--SNSSCPKC 173 (233)
Q Consensus 132 C~ICl~~~~~~~~~~~lp-~C~H---~FH~~Ci~~Wl~--~~~~CP~C 173 (233)
|-||+++-.+++ ..+.| .|.= ..|..|+..|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999876655 33455 2333 789999999986 45579887
No 64
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.83 E-value=0.0041 Score=46.47 Aligned_cols=32 Identities=25% Similarity=0.648 Sum_probs=26.3
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHH
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCID 161 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~ 161 (233)
.+..|++|-..+.. ....+.| |||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 34679999999977 4566778 99999999974
No 65
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.75 E-value=0.0037 Score=52.35 Aligned_cols=43 Identities=26% Similarity=0.558 Sum_probs=35.9
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHC 176 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 176 (233)
..|.||-.+|.. ..++. |||.||..|...-++....|-+|-..
T Consensus 197 F~C~iCKkdy~s---pvvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYES---PVVTE-CGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred eeehhchhhccc---hhhhh-cchhHHHHHHHHHhccCCcceecchh
Confidence 479999999986 33444 99999999998888888899999654
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.68 E-value=0.0026 Score=57.00 Aligned_cols=49 Identities=24% Similarity=0.611 Sum_probs=39.4
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
...|.+|-.-|.+...+ . .|-|-||+.||...|....+||.|...+...
T Consensus 15 ~itC~LC~GYliDATTI--~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTI--T-ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecchhH--H-HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 46899998887664333 2 4999999999999999999999998766543
No 67
>PHA03096 p28-like protein; Provisional
Probab=95.54 E-value=0.0067 Score=53.93 Aligned_cols=48 Identities=21% Similarity=0.519 Sum_probs=34.1
Q ss_pred CcccccccccccCc----eeeecCCCCCccchhHHHHHHhcC---CC---Cccccccc
Q 026797 130 AECVICLSDFALGE----RVRLLPKCNHGFHVRCIDRWLRSN---SS---CPKCRHCL 177 (233)
Q Consensus 130 ~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~Ci~~Wl~~~---~~---CP~CR~~l 177 (233)
..|.||++...... .-.+|+.|.|.|+..||..|-... .+ ||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence 67999999876432 334677899999999999997432 23 55555544
No 68
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.52 E-value=0.014 Score=47.26 Aligned_cols=50 Identities=24% Similarity=0.600 Sum_probs=35.1
Q ss_pred CCCCcccccccccccCceeeecC-CCCC---ccchhHHHHHHhc--CCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLP-KCNH---GFHVRCIDRWLRS--NSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H---~FH~~Ci~~Wl~~--~~~CP~CR~~l~~~ 180 (233)
..+..|-||.++-.. . ..| .|.. .-|.+|+..|+.. ..+|+.|++...-.
T Consensus 6 ~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 346789999988432 2 235 2444 5699999999864 44799998876433
No 69
>PHA02862 5L protein; Provisional
Probab=95.48 E-value=0.012 Score=47.00 Aligned_cols=46 Identities=20% Similarity=0.481 Sum_probs=33.9
Q ss_pred CCcccccccccccCceeeecCCCC-----CccchhHHHHHHhc--CCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCN-----HGFHVRCIDRWLRS--NSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR~~l~~ 179 (233)
++.|-||+++-+++ .-| |. ..-|.+|+..|+.. +..|++|+....-
T Consensus 2 ~diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 36799999985332 245 53 57899999999954 4479999997653
No 70
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.46 E-value=0.0093 Score=37.92 Aligned_cols=41 Identities=32% Similarity=0.797 Sum_probs=24.6
Q ss_pred ccccccccccCceeeecCCCCCccchhHHHHHHhcCC--CCccc
Q 026797 132 CVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS--SCPKC 173 (233)
Q Consensus 132 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~C 173 (233)
|.+|.+-...|....... |+=.+|..|+..++..+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~-C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRD-CNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCc-cCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888877776665444 999999999999997666 79988
No 71
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.013 Score=50.61 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=46.1
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
...|+||.+.+.+...+.+|..|||+|..+|+...+.....||+|-.++.+.
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 3679999999998887777777999999999999999999999998887665
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.37 E-value=0.014 Score=38.05 Aligned_cols=45 Identities=22% Similarity=0.617 Sum_probs=20.7
Q ss_pred ccccccccccCceeeecC-CCCCccchhHHHHHHh-cCCCCccccccc
Q 026797 132 CVICLSDFALGERVRLLP-KCNHGFHVRCIDRWLR-SNSSCPKCRHCL 177 (233)
Q Consensus 132 C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l 177 (233)
|++|.+++...+ ....| .|++..+..|...-+. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984433 23444 3788888888776664 466899999863
No 73
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.32 E-value=0.017 Score=52.12 Aligned_cols=74 Identities=23% Similarity=0.467 Sum_probs=49.1
Q ss_pred CCCCcccccccccccCcee-eecCCCCCccchhHHHHHH-hcCCCCccccccccccccccccCcccccccccCCCCCCCC
Q 026797 127 GLDAECVICLSDFALGERV-RLLPKCNHGFHVRCIDRWL-RSNSSCPKCRHCLIETCEKIVGCSQQQASSLASSTAPVQE 204 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (233)
.+++-|+.|++++...++- .-.+ ||...|.-|...-- .-+..||-||+...++
T Consensus 12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~de------------------------ 66 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDE------------------------ 66 (480)
T ss_pred cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcccc------------------------
Confidence 4556799999999876653 3344 78766666643321 2355799999975433
Q ss_pred cceeeecCCCChhhhhhhhhhhh
Q 026797 205 TVVISIVPLEPEGCLDKLVRERE 227 (233)
Q Consensus 205 ~~~~~i~p~~~e~~~~~~~~e~~ 227 (233)
.|+-.++.+|++-++|.|--|
T Consensus 67 --nv~~~~~s~ee~kmel~rk~e 87 (480)
T COG5175 67 --NVRYVTLSPEELKMELARKEE 87 (480)
T ss_pred --ceeEEecCHHHHHHHHHhhhh
Confidence 345667788888888876443
No 74
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.017 Score=52.42 Aligned_cols=49 Identities=27% Similarity=0.564 Sum_probs=41.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
.++..|+||+..-. .....| |+|.=|..||.+-+.+.+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi---~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI---NAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccc---hhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 56789999987632 355678 99999999999999999999999998774
No 75
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.013 Score=54.06 Aligned_cols=36 Identities=25% Similarity=0.681 Sum_probs=31.5
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHh
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR 165 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~ 165 (233)
-..|.||+++.........+| |+|+|+..|...++.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFT 219 (445)
T ss_pred cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHH
Confidence 367999999987667788899 999999999999974
No 76
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.87 E-value=0.012 Score=55.93 Aligned_cols=49 Identities=27% Similarity=0.537 Sum_probs=36.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHh-----cCCCCccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-----SNSSCPKCRHCLIE 179 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l~~ 179 (233)
.++.+|-+|-+.-++ ..... |.|.||.-||.+++. .+-+||+|...+.-
T Consensus 534 k~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 445789999887443 34444 999999999998864 23479999876643
No 77
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.0024 Score=58.34 Aligned_cols=51 Identities=22% Similarity=0.586 Sum_probs=44.1
Q ss_pred CCcccccccccccC-ceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 129 DAECVICLSDFALG-ERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
...|+||.+.++.. +++..+- |||++|.+|+..||.....||.||+.+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 46799999999877 6777776 999999999999999988999999987643
No 78
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.63 E-value=0.034 Score=50.38 Aligned_cols=62 Identities=26% Similarity=0.455 Sum_probs=42.8
Q ss_pred hhCCceecccccCCCCCCCcccccccccccCceeeecCCCCCccchhHHHHH--HhcCCCCccccccc
Q 026797 112 KAFPVVKYSAELKLPGLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRW--LRSNSSCPKCRHCL 177 (233)
Q Consensus 112 ~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W--l~~~~~CP~CR~~l 177 (233)
..-|....+..+...+++..|.||-+.+.- ..++| |+|..|.-|--.. |...+.||+||...
T Consensus 44 saEPnlttsSaddtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 44 SAEPNLTTSSADDTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccCCccccccccccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 334444433333333455789999888643 67889 9999999997554 56778899999853
No 79
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.0085 Score=52.96 Aligned_cols=43 Identities=28% Similarity=0.688 Sum_probs=30.6
Q ss_pred CCcccccccccccCceeeecCCCCCcc-chhHHHHHHhcCCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGF-HVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
+.-|+||++.-.+ +..|+ |||.. |.+|-.. -+.||+||+.|..
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKR----MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcEEeehhhccc----cccCchHHHHHHH
Confidence 5679999987544 78898 99963 3445333 2379999997653
No 80
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.17 E-value=0.016 Score=49.95 Aligned_cols=43 Identities=26% Similarity=0.607 Sum_probs=31.6
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCL 177 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 177 (233)
.|..|.-.-. ++...++. |+|+||..|...- ....||+|+.++
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~i 47 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSI 47 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccC--Ccccccccccee
Confidence 4777765444 66777776 9999999997663 222899999984
No 81
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.05 E-value=0.028 Score=49.67 Aligned_cols=49 Identities=27% Similarity=0.622 Sum_probs=39.4
Q ss_pred CCcccccccccccCc-eeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 129 DAECVICLSDFALGE-RVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
...|+||.+.+-... .+..++ |||.-|..|+......+.+||+|.. +.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hHH
Confidence 355999999865544 456777 9999999999999877799999988 543
No 82
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.067 Score=47.02 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=37.1
Q ss_pred CCCCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC--CCCccccccccc
Q 026797 125 LPGLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN--SSCPKCRHCLIE 179 (233)
Q Consensus 125 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~ 179 (233)
....+.+|++|-+.-... -...+ |+|+||--||..-+... -+||.|-.....
T Consensus 235 ~~t~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cccCCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 345678999998774432 23344 99999999998875433 589999776543
No 83
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=0.036 Score=49.13 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=36.1
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCL 177 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 177 (233)
..|-||...|... .++. |+|.||..|...-++....|.+|-+..
T Consensus 242 f~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccc---hhhc-CCceeehhhhccccccCCcceeccccc
Confidence 4599999999763 3444 999999999888888888999997654
No 84
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.052 Score=48.10 Aligned_cols=47 Identities=32% Similarity=0.723 Sum_probs=37.5
Q ss_pred CcccccccccccCc---eeeecCCCCCccchhHHHHHHhc-CCCCccccccc
Q 026797 130 AECVICLSDFALGE---RVRLLPKCNHGFHVRCIDRWLRS-NSSCPKCRHCL 177 (233)
Q Consensus 130 ~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l 177 (233)
..|-||-++|..++ ..+++. |||.|+..|+..-+.. ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998874 346666 9999999999886643 33699999984
No 85
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.28 E-value=0.075 Score=47.31 Aligned_cols=63 Identities=29% Similarity=0.620 Sum_probs=40.8
Q ss_pred HHHHhhCCceecccccCCCCCCCcccccccccccCceeeecCCCCCccchhHHHHHHh-cCCCCccccc
Q 026797 108 KKALKAFPVVKYSAELKLPGLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-SNSSCPKCRH 175 (233)
Q Consensus 108 ~~~~~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~ 175 (233)
++++...|...|.. +.+.....|+.|..-..+. ++ ++.|+|.|+.+||..-|. ....||.|.+
T Consensus 255 ~~a~~~~~Dqv~k~--~~~~i~LkCplc~~Llrnp--~k-T~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 255 TKAVAEIPDQVYKM--QPPNISLKCPLCHCLLRNP--MK-TPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred HHhhhhCchhhhcc--CCCCccccCcchhhhhhCc--cc-CccccchHHHHHHhhhhhhccccCCCccc
Confidence 34444454444422 1222336799998776653 22 356999999999998875 5568999955
No 86
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.22 E-value=0.12 Score=34.50 Aligned_cols=34 Identities=24% Similarity=0.760 Sum_probs=29.1
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHH
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDR 162 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 162 (233)
...|.+|-+.|..++.+.+-|.|+-.+|..|.+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4679999999998887888888999999999443
No 87
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.062 Score=44.43 Aligned_cols=29 Identities=34% Similarity=1.000 Sum_probs=23.5
Q ss_pred CCCCccchhHHHHHHhc----CC-------CCcccccccc
Q 026797 150 KCNHGFHVRCIDRWLRS----NS-------SCPKCRHCLI 178 (233)
Q Consensus 150 ~C~H~FH~~Ci~~Wl~~----~~-------~CP~CR~~l~ 178 (233)
.||.-||.-|+..||+. ++ .||-|..++.
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 49999999999999863 22 4999988764
No 88
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.19 E-value=0.038 Score=36.90 Aligned_cols=43 Identities=28% Similarity=0.580 Sum_probs=30.7
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..|-.|... +.+-.++| |+|+.+..|.+-| +-+.||.|-+++.
T Consensus 8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~ 50 (55)
T PF14447_consen 8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFE 50 (55)
T ss_pred eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCccc
Confidence 345555443 33456778 9999999997775 6667999987763
No 89
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.46 E-value=0.064 Score=53.60 Aligned_cols=40 Identities=28% Similarity=0.821 Sum_probs=30.3
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRH 175 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 175 (233)
..|..|-..++-. ..-. .|||.||.+|+. .+...||-|+-
T Consensus 841 skCs~C~~~LdlP--~VhF-~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHF-LCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccc--eeee-ecccHHHHHhhc---cCcccCCccch
Confidence 5799998776542 2223 399999999998 35567999987
No 90
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.33 E-value=0.16 Score=44.53 Aligned_cols=51 Identities=16% Similarity=0.356 Sum_probs=39.0
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
.....|+|...+|........+..|||+|-..++..- .....||+|-.++.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFT 161 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccc
Confidence 4457899999999665555555449999999999996 33557999977654
No 91
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.17 E-value=0.067 Score=53.66 Aligned_cols=36 Identities=25% Similarity=0.597 Sum_probs=27.8
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHH
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWL 164 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 164 (233)
..++.|.+|.-.+... .-.+.| |||.||++|+..-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 3468999998887653 445667 99999999997653
No 92
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.42 E-value=0.084 Score=47.20 Aligned_cols=44 Identities=30% Similarity=0.693 Sum_probs=30.4
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..|--|- |-....-|+.| |+|+||.+|... ...+.||.|-..+.
T Consensus 91 HfCd~Cd--~PI~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCD--FPIAIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccC--Ccceeeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence 3577773 33334568889 999999999654 24568999965543
No 93
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.97 E-value=0.074 Score=55.33 Aligned_cols=44 Identities=32% Similarity=0.711 Sum_probs=36.4
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHC 176 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 176 (233)
..|.||++.+.....+. .|||.++..|+..|+..+..||.|...
T Consensus 1154 ~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhh
Confidence 47999999987533222 399999999999999999999999743
No 94
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=90.67 E-value=0.57 Score=28.88 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026797 54 KNVLIVLSVLVCTVICTIVLNFVIKCALS 82 (233)
Q Consensus 54 ~~viiil~ill~~~i~~l~l~~i~rc~~r 82 (233)
+.+.+|.+++++..++++.+++++.|++|
T Consensus 4 s~IaIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 4 STIAIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34556666666666655555555544433
No 95
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.73 E-value=0.14 Score=50.85 Aligned_cols=46 Identities=30% Similarity=0.747 Sum_probs=35.5
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcC--CCCcccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN--SSCPKCRHCLIET 180 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~ 180 (233)
..|.||++ .+...+.+ |+|.|+..|+..-+... ..||.||..+.+.
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 68999999 34455666 99999999988876432 3599999977655
No 96
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.68 E-value=0.2 Score=49.76 Aligned_cols=22 Identities=36% Similarity=1.031 Sum_probs=20.7
Q ss_pred CCCCccchhHHHHHHhcCCCCc
Q 026797 150 KCNHGFHVRCIDRWLRSNSSCP 171 (233)
Q Consensus 150 ~C~H~FH~~Ci~~Wl~~~~~CP 171 (233)
.|+|+.|.+|..+|+.....||
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cp 1068 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCP 1068 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCC
Confidence 3999999999999999999998
No 97
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=89.68 E-value=0.39 Score=38.98 Aligned_cols=36 Identities=25% Similarity=0.592 Sum_probs=21.9
Q ss_pred CCcccccccccccCc---------eeeecCCCCCc-cchhHHHHHHh
Q 026797 129 DAECVICLSDFALGE---------RVRLLPKCNHG-FHVRCIDRWLR 165 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~---------~~~~lp~C~H~-FH~~Ci~~Wl~ 165 (233)
+..|+||||--.+.. .+|-.= |+-. =|..|++.+-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHH
Confidence 468999999754421 122222 5543 37889998853
No 98
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=0.12 Score=50.29 Aligned_cols=44 Identities=27% Similarity=0.557 Sum_probs=33.6
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHC 176 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 176 (233)
..|.||+..|......-+...|||..|..|+..- .+.+|| |+++
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence 4699999998776544444469999999999874 567899 6553
No 99
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=0.19 Score=48.57 Aligned_cols=51 Identities=29% Similarity=0.788 Sum_probs=41.2
Q ss_pred CCCCCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccccc
Q 026797 124 KLPGLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIETCE 182 (233)
Q Consensus 124 ~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 182 (233)
+..+..+.|.||+.++ ..+..+ |. |..|+.+|+..+..||+|+..+.+...
T Consensus 474 ~l~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred hhhcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 3445568999999998 456666 88 999999999999999999988766643
No 100
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=88.90 E-value=0.4 Score=44.02 Aligned_cols=25 Identities=28% Similarity=0.922 Sum_probs=18.3
Q ss_pred CccchhHHHHHHhcCC-------------CCccccccc
Q 026797 153 HGFHVRCIDRWLRSNS-------------SCPKCRHCL 177 (233)
Q Consensus 153 H~FH~~Ci~~Wl~~~~-------------~CP~CR~~l 177 (233)
-.+|.+|+.+|+..++ .||.||+..
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 4456789999985432 599999853
No 101
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.90 E-value=0.37 Score=48.11 Aligned_cols=60 Identities=8% Similarity=0.185 Sum_probs=43.2
Q ss_pred CCcccccccccccCc---eeeecCCCCCccchhHHHHHHhc------CCCCccccccccccccccccCc
Q 026797 129 DAECVICLSDFALGE---RVRLLPKCNHGFHVRCIDRWLRS------NSSCPKCRHCLIETCEKIVGCS 188 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~~~~~~~~~~ 188 (233)
.+.|.+|..++...+ ..-.+..|+|.||..||..|..+ +-.|+.|..++..+.+....+.
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCP 164 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCP 164 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCc
Confidence 467888888887632 22222359999999999999742 2358999999988876665554
No 102
>PF15050 SCIMP: SCIMP protein
Probab=88.84 E-value=1.3 Score=34.36 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=15.2
Q ss_pred hhHHHHHHH--HHHHHHHHHHHHHHHHHHhhcc
Q 026797 55 NVLIVLSVL--VCTVICTIVLNFVIKCALSSLR 85 (233)
Q Consensus 55 ~viiil~il--l~~~i~~l~l~~i~rc~~r~~~ 85 (233)
++|||+++- ++.+++.+++++++|+.+|+.+
T Consensus 7 nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGk 39 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLGLILYCVCRWQLRQGK 39 (133)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 455555444 3334444444445555555544
No 103
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.27 E-value=0.39 Score=42.50 Aligned_cols=50 Identities=24% Similarity=0.698 Sum_probs=35.9
Q ss_pred CCcccccccccccCce-eeecCCCC-----CccchhHHHHHHh--cCCCCccccccccc
Q 026797 129 DAECVICLSDFALGER-VRLLPKCN-----HGFHVRCIDRWLR--SNSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~-~~~lp~C~-----H~FH~~Ci~~Wl~--~~~~CP~CR~~l~~ 179 (233)
+..|-||.++...... ....| |. +..|..|++.|+. ....|-+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4789999998654332 33445 54 5679999999986 55679999885543
No 104
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.18 E-value=0.56 Score=41.60 Aligned_cols=47 Identities=26% Similarity=0.665 Sum_probs=34.2
Q ss_pred cccccccc-cccCc-eeeecCCCCCccchhHHHHHHhc-CCCCcccccccc
Q 026797 131 ECVICLSD-FALGE-RVRLLPKCNHGFHVRCIDRWLRS-NSSCPKCRHCLI 178 (233)
Q Consensus 131 ~C~ICl~~-~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~ 178 (233)
.|++|-.+ |-+.+ ...+-+ |+|-.|.+|++.-+.. ...||.|-..+-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 59999877 33333 444446 9999999999998754 457999976554
No 105
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=85.08 E-value=1.4 Score=34.36 Aligned_cols=7 Identities=0% Similarity=0.145 Sum_probs=2.8
Q ss_pred CCCchhh
Q 026797 50 SNLDKNV 56 (233)
Q Consensus 50 ~~~~~~v 56 (233)
..|....
T Consensus 59 h~fs~~~ 65 (122)
T PF01102_consen 59 HRFSEPA 65 (122)
T ss_dssp SSSS-TC
T ss_pred cCccccc
Confidence 4455443
No 106
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=84.57 E-value=0.37 Score=41.71 Aligned_cols=48 Identities=29% Similarity=0.760 Sum_probs=36.1
Q ss_pred CCCcccccccc-c-ccCceeeecCCCCCccchhHHHHHHhc-CCCCc--cccc
Q 026797 128 LDAECVICLSD-F-ALGERVRLLPKCNHGFHVRCIDRWLRS-NSSCP--KCRH 175 (233)
Q Consensus 128 ~~~~C~ICl~~-~-~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP--~CR~ 175 (233)
.+..|+||..+ | ..+.++-+-|.|-|-.|.+|++.-+.. ...|| -|-.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 35689999988 3 333455666789999999999998855 45799 8854
No 107
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=83.66 E-value=0.76 Score=41.25 Aligned_cols=44 Identities=18% Similarity=0.420 Sum_probs=32.1
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
.+|+||.+.+...... -+ =||.-+..|-. +..+.||.||.++..
T Consensus 49 leCPvC~~~l~~Pi~Q--C~-nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 49 LDCPVCFNPLSPPIFQ--CD-NGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred ccCchhhccCccccee--cC-CCcEehhhhhh---hhcccCCcccccccc
Confidence 6899999998764332 11 36888888855 467789999998863
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.23 E-value=1.1 Score=44.74 Aligned_cols=41 Identities=29% Similarity=0.555 Sum_probs=29.9
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPK 172 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~ 172 (233)
..|.+|-..+.. ..+ ..+.|+|.-|.+|+..|+....-||.
T Consensus 780 ~~CtVC~~vi~G-~~~-~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRG-VDV-WCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceeee-eEe-ecccccccccHHHHHHHHhcCCCCcc
Confidence 468888655432 222 23469999999999999998887765
No 109
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.78 E-value=0.62 Score=39.61 Aligned_cols=38 Identities=34% Similarity=0.649 Sum_probs=27.1
Q ss_pred ccccccccccCceeeecCCCCC-ccchhHHHHHHhcCCCCccccccc
Q 026797 132 CVICLSDFALGERVRLLPKCNH-GFHVRCIDRWLRSNSSCPKCRHCL 177 (233)
Q Consensus 132 C~ICl~~~~~~~~~~~lp~C~H-~FH~~Ci~~Wl~~~~~CP~CR~~l 177 (233)
|-.|-+. +..+.++| |.| ++|..|-.. -..||+|+...
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChh
Confidence 7788665 44588999 997 566677443 35699998764
No 110
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=82.64 E-value=0.44 Score=46.29 Aligned_cols=43 Identities=28% Similarity=0.777 Sum_probs=26.5
Q ss_pred CCcccccccc-----cccCceeeecCCCCCccchhHHHHHHhcCCCCccccc
Q 026797 129 DAECVICLSD-----FALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRH 175 (233)
Q Consensus 129 ~~~C~ICl~~-----~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 175 (233)
...|.+|-.. |+. +.++..-.|+++||..|+.. ....||.|-+
T Consensus 511 gfiCe~Cq~~~iiyPF~~-~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFET-RNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred eeeeeeccCCCccccccc-ccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 4668888322 332 23333334999999999544 5556999943
No 111
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.40 E-value=0.61 Score=40.76 Aligned_cols=51 Identities=29% Similarity=0.737 Sum_probs=34.7
Q ss_pred CCCCcccccccccccCcee-eecCCC-----CCccchhHHHHHHhcCC--------CCcccccccc
Q 026797 127 GLDAECVICLSDFALGERV-RLLPKC-----NHGFHVRCIDRWLRSNS--------SCPKCRHCLI 178 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~-~~lp~C-----~H~FH~~Ci~~Wl~~~~--------~CP~CR~~l~ 178 (233)
..+..|-||+..=+++... .+-| | .|--|..|+..|+..++ +||-|+....
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 3457899998875443322 3445 5 48899999999984221 5999988643
No 112
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.05 E-value=0.62 Score=43.22 Aligned_cols=37 Identities=27% Similarity=0.662 Sum_probs=27.0
Q ss_pred CCcccccccccccC-ceeeecCCCCCccchhHHHHHHhc
Q 026797 129 DAECVICLSDFALG-ERVRLLPKCNHGFHVRCIDRWLRS 166 (233)
Q Consensus 129 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~ 166 (233)
..+|.||..+.... +...+. .|+|.|+.+|+...+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence 46899999554444 444444 59999999999988753
No 113
>PF14979 TMEM52: Transmembrane 52
Probab=81.61 E-value=2.5 Score=33.86 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026797 55 NVLIVLSVLVCTVICTIVLNFVIKCALSSLR 85 (233)
Q Consensus 55 ~viiil~ill~~~i~~l~l~~i~rc~~r~~~ 85 (233)
.|++|+.+++.+++|.+...++..|++|+.+
T Consensus 21 yIwLill~~~llLLCG~ta~C~rfCClrk~~ 51 (154)
T PF14979_consen 21 YIWLILLIGFLLLLCGLTASCVRFCCLRKQA 51 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3455555556566666665556557777664
No 114
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=81.28 E-value=1.1 Score=37.73 Aligned_cols=41 Identities=41% Similarity=0.896 Sum_probs=29.3
Q ss_pred CCcccccccc-----cccCceeeecCCCCCccchhHHHHHHhcCCCCccccc
Q 026797 129 DAECVICLSD-----FALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRH 175 (233)
Q Consensus 129 ~~~C~ICl~~-----~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 175 (233)
+..|-+|-++ |+. +.+..-++|+-+||..|.. ...||-|-+
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 4689999764 333 3455556799999999955 267999943
No 115
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=81.22 E-value=0.56 Score=30.43 Aligned_cols=43 Identities=26% Similarity=0.549 Sum_probs=24.5
Q ss_pred cccccccccccCceeeecCCCC-CccchhHHHHHHhcCCCCccccccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCN-HGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
.|--|+-+.+. ++ +|+ |..+..|+...+.....||+|..+++.
T Consensus 4 nCKsCWf~~k~---Li---~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANKG---LI---KCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--SS---EE---E-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhcCCC---ee---eecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 46666644322 22 275 999999999999999999999988754
No 116
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=80.39 E-value=0.78 Score=39.00 Aligned_cols=43 Identities=30% Similarity=0.696 Sum_probs=34.2
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCR 174 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 174 (233)
-..|.+|..-.-.+. |.- .||-.+|..|+...+.+...||.|-
T Consensus 181 lk~Cn~Ch~LvIqg~--rCg-~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGI--RCG-SCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhheee--ccC-cccchhhhHHHHHHhcccCcCCchh
Confidence 367999988765543 223 3888999999999999999999994
No 117
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=77.66 E-value=1.9 Score=43.40 Aligned_cols=52 Identities=21% Similarity=0.535 Sum_probs=36.7
Q ss_pred CCCCcccccccccccCceeeecC-CCC---CccchhHHHHHHhc--CCCCccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLP-KCN---HGFHVRCIDRWLRS--NSSCPKCRHCLIE 179 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp-~C~---H~FH~~Ci~~Wl~~--~~~CP~CR~~l~~ 179 (233)
+++..|-||..+=..++.+ .-| +|. ...|.+|+.+|+.- ...|-+|+..+.-
T Consensus 10 ~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred ccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 4457899999986665544 234 243 46899999999963 4469999987643
No 118
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=75.63 E-value=2.2 Score=41.83 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=19.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026797 52 LDKNVLIVLSVLVCTVICTIVLNFVIKCALSSL 84 (233)
Q Consensus 52 ~~~~viiil~ill~~~i~~l~l~~i~rc~~r~~ 84 (233)
-+.|+|||++|++-+++++++++++++++.|+.
T Consensus 265 ~~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~ 297 (684)
T PF12877_consen 265 PPNNLWIIAGVLVPVLVVLLIIIILYWKLCRKN 297 (684)
T ss_pred CCCCeEEEehHhHHHHHHHHHHHHHHHHHhccc
Confidence 356888888887666655555444444444433
No 119
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=75.25 E-value=0.78 Score=45.31 Aligned_cols=47 Identities=32% Similarity=0.670 Sum_probs=34.8
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhc---CCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS---NSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~l~~ 179 (233)
..+|+||+..+... ..+ +|.|.|+..|+..-+.. ...||+|+..+..
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 36899999998764 344 49999999997665533 3469999876543
No 120
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=74.56 E-value=2.5 Score=33.45 Aligned_cols=50 Identities=22% Similarity=0.446 Sum_probs=32.9
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHH-HHHH--hcCCCCcccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCI-DRWL--RSNSSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci-~~Wl--~~~~~CP~CR~~l~ 178 (233)
-.+|.||.|.-.+..-+.--.-||-..+.-|- .-|- ..+..||+|+.+.-
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 37899999875543322222248887777764 5563 34668999999864
No 121
>PHA02849 putative transmembrane protein; Provisional
Probab=72.53 E-value=17 Score=26.04 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=33.3
Q ss_pred CCCCCchhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccCCCCCCCchhhHHHhcCCCHHHHhhCCceecccc
Q 026797 48 SESNLDKNVLIVLSVLVCTVI-CTIVLNFVIKCALSSLRLLLSSDSGTNSSATKAINKGINKKALKAFPVVKYSAE 122 (233)
Q Consensus 48 ~~~~~~~~viiil~ill~~~i-~~l~l~~i~rc~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~ 122 (233)
++.+|+...++++.+++.++. .+..+.++++|..-..-.+ ..+-+.-+-..++....+..+.|.++
T Consensus 8 ~d~~f~~g~v~vi~v~v~vI~i~~flLlyLvkws~v~d~~n---------~iK~kiin~TTRRsF~~Ld~VYYTdD 74 (82)
T PHA02849 8 NDIEFDAGAVTVILVFVLVISFLAFMLLYLIKWSYVINFLN---------DMKIKLINLTTRRSFTHLNNVYYTSD 74 (82)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhhhhhhHHHhcCEEeccC
Confidence 677788777777655554433 3333444555543221110 11112223335566667777777654
No 122
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=72.38 E-value=2.8 Score=27.62 Aligned_cols=43 Identities=28% Similarity=0.597 Sum_probs=20.7
Q ss_pred ccccccccccCc------eeeecCCCCCccchhHHHHHHhcCCCCcccc
Q 026797 132 CVICLSDFALGE------RVRLLPKCNHGFHVRCIDRWLRSNSSCPKCR 174 (233)
Q Consensus 132 C~ICl~~~~~~~------~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 174 (233)
|--|+..|.... ..-.-++|++.|+.+|=.--=..-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555666666542 3344567999999999332112334699883
No 123
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=72.05 E-value=5.6 Score=24.93 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026797 56 VLIVLSVLVCTVICTIVLNFVIKCALSS 83 (233)
Q Consensus 56 viiil~ill~~~i~~l~l~~i~rc~~r~ 83 (233)
+++++.+++++.+.++.++.+.+|.-|+
T Consensus 10 VIlVF~lVglv~i~iva~~iYRKw~aRk 37 (43)
T PF08114_consen 10 VILVFCLVGLVGIGIVALFIYRKWQARK 37 (43)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443434344444444444333
No 124
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.81 E-value=2.1 Score=38.21 Aligned_cols=27 Identities=22% Similarity=0.722 Sum_probs=20.3
Q ss_pred CCCccchhHHHHHHhc-------------CCCCccccccc
Q 026797 151 CNHGFHVRCIDRWLRS-------------NSSCPKCRHCL 177 (233)
Q Consensus 151 C~H~FH~~Ci~~Wl~~-------------~~~CP~CR~~l 177 (233)
|.-.+|.+|+..|+.. +-+||+||+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f 364 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF 364 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence 5567788999998753 23699999854
No 125
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.72 E-value=3.8 Score=35.87 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=36.5
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
...|+|---+|.....--.+..|||+|-..-+.+. ...+|++|-..+-+.
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQED 160 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccccc
Confidence 45799988777665544444559999998887774 467899998765443
No 126
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.17 E-value=3.4 Score=38.29 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=36.5
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCC---CCcccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS---SCPKCR 174 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~CR 174 (233)
..|+|=.+.-.++.....|. |||+...+-+..-.++.. .||-|-
T Consensus 335 F~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 57999988888877777887 999999999999765544 599993
No 127
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=70.50 E-value=2.5 Score=37.22 Aligned_cols=49 Identities=29% Similarity=0.667 Sum_probs=34.9
Q ss_pred CCcccccccccccCceeee---cCCCCCccchhHHHHHHhc---------CCCCccccccc
Q 026797 129 DAECVICLSDFALGERVRL---LPKCNHGFHVRCIDRWLRS---------NSSCPKCRHCL 177 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~---lp~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~l 177 (233)
..+|.+|.+++.+.+..+. -+.|+-.+|..|+..-+.. ...||.|++.+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 3689999999955444332 2358889999999985432 23699998854
No 128
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=70.40 E-value=7.7 Score=29.16 Aligned_cols=32 Identities=13% Similarity=0.359 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026797 54 KNVLIVLSVLVCTVICTIVLNFVIKCALSSLR 85 (233)
Q Consensus 54 ~~viiil~ill~~~i~~l~l~~i~rc~~r~~~ 85 (233)
-...++++|++++++..+++++.+||-.+++.
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~ 46 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAAKCPVWYKY 46 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45566677778888888888888888776654
No 129
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.99 E-value=6.3 Score=30.28 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=33.5
Q ss_pred CCcccccccccccCc----------eeeecCCCCCccchhHHHHHHhcCCCCcccc
Q 026797 129 DAECVICLSDFALGE----------RVRLLPKCNHGFHVRCIDRWLRSNSSCPKCR 174 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~----------~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 174 (233)
...|--|+..|.... ..-.-++|++.|+.+|=.-|-..-..||.|-
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 356999999886431 1123456999999999777766667799995
No 130
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=68.30 E-value=2.6 Score=34.61 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=4.4
Q ss_pred hHHHHHHHHHH
Q 026797 56 VLIVLSVLVCT 66 (233)
Q Consensus 56 viiil~ill~~ 66 (233)
++|+++|++++
T Consensus 78 ~~iivgvi~~V 88 (179)
T PF13908_consen 78 TGIIVGVICGV 88 (179)
T ss_pred eeeeeehhhHH
Confidence 33444444333
No 131
>PF15102 TMEM154: TMEM154 protein family
Probab=68.18 E-value=1.9 Score=34.61 Aligned_cols=10 Identities=30% Similarity=0.956 Sum_probs=5.9
Q ss_pred hhHHHHHHhc
Q 026797 157 VRCIDRWLRS 166 (233)
Q Consensus 157 ~~Ci~~Wl~~ 166 (233)
..=+++|+..
T Consensus 127 meeldkwm~s 136 (146)
T PF15102_consen 127 MEELDKWMNS 136 (146)
T ss_pred HHHHHhHHHh
Confidence 3456777643
No 132
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.06 E-value=2.2 Score=42.81 Aligned_cols=43 Identities=23% Similarity=0.519 Sum_probs=31.0
Q ss_pred CCccccccccccc-C---ceeeecCCCCCccchhHHHHHHhcCCCCccc
Q 026797 129 DAECVICLSDFAL-G---ERVRLLPKCNHGFHVRCIDRWLRSNSSCPKC 173 (233)
Q Consensus 129 ~~~C~ICl~~~~~-~---~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 173 (233)
+..|.-|.+..-. + +.+.++. |+|.||..|+..-..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 4589999887542 2 3456665 999999999988766555 5544
No 133
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=65.73 E-value=2.8 Score=39.41 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=27.9
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHh
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR 165 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~ 165 (233)
++..|+||..-|.+ .++|| |+|..|.-|...-+.
T Consensus 3 eelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE---PIILP-CSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccC---ceEee-cccHHHHHHHHhhcc
Confidence 35679999998876 66788 999999999887654
No 135
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=65.44 E-value=6.4 Score=22.92 Aligned_cols=37 Identities=30% Similarity=0.527 Sum_probs=23.7
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCL 177 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 177 (233)
.|..|-+.+..++.... . =+..||.+| -.|..|...|
T Consensus 1 ~C~~C~~~i~~~~~~~~-~-~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLR-A-LGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEE-e-CCccccccC--------CCCcccCCcC
Confidence 37888888776533322 2 478899877 3467776654
No 136
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=64.25 E-value=4.6 Score=22.70 Aligned_cols=23 Identities=22% Similarity=0.639 Sum_probs=12.6
Q ss_pred cccccccccccCceeeecCCCCCcc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGF 155 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~F 155 (233)
.|+-|-.++... .+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 466666665432 33445577766
No 137
>PRK01844 hypothetical protein; Provisional
Probab=64.20 E-value=19 Score=25.45 Aligned_cols=29 Identities=14% Similarity=0.120 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026797 56 VLIVLSVLVCTVICTIVLNFVIKCALSSL 84 (233)
Q Consensus 56 viiil~ill~~~i~~l~l~~i~rc~~r~~ 84 (233)
++++++++.+++.+++++++..+...+..
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ark~~~k~l 33 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFIARKYMMNYL 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333333333333333333333
No 138
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=63.40 E-value=13 Score=29.89 Aligned_cols=6 Identities=33% Similarity=0.711 Sum_probs=2.6
Q ss_pred hhhhcc
Q 026797 11 QLFQDF 16 (233)
Q Consensus 11 ~~~~~~ 16 (233)
..||..
T Consensus 4 effqpv 9 (189)
T PF05568_consen 4 EFFQPV 9 (189)
T ss_pred cccccc
Confidence 344443
No 139
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=61.42 E-value=3.9 Score=26.07 Aligned_cols=43 Identities=26% Similarity=0.622 Sum_probs=27.9
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHh------cCCCCcccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR------SNSSCPKCR 174 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~------~~~~CP~CR 174 (233)
.|.||...-..++.+ .-..|+..||..|+..=.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i-~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMI-QCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEE-EBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeE-EcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 388998844444444 4445999999999865432 133588775
No 140
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.30 E-value=5.2 Score=37.74 Aligned_cols=37 Identities=27% Similarity=0.571 Sum_probs=29.3
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS 166 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~ 166 (233)
.....|-||.+.+.. .+..+. |+|.|+..|+...+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 445789999999876 344555 9999999999988754
No 141
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=60.75 E-value=13 Score=26.88 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=12.3
Q ss_pred CCCchhhHHHHHHHHHHHHHHH
Q 026797 50 SNLDKNVLIVLSVLVCTVICTI 71 (233)
Q Consensus 50 ~~~~~~viiil~ill~~~i~~l 71 (233)
..++.++++.+.++++++|+++
T Consensus 20 ~~l~pn~lMtILivLVIIiLlI 41 (85)
T PF10717_consen 20 NGLNPNTLMTILIVLVIIILLI 41 (85)
T ss_pred cccChhHHHHHHHHHHHHHHHH
Confidence 4566777666555554444333
No 142
>PRK00523 hypothetical protein; Provisional
Probab=59.89 E-value=23 Score=25.01 Aligned_cols=28 Identities=14% Similarity=-0.068 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026797 56 VLIVLSVLVCTVICTIVLNFVIKCALSS 83 (233)
Q Consensus 56 viiil~ill~~~i~~l~l~~i~rc~~r~ 83 (233)
++++++++.++..+++++++..+...+.
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k~ 33 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKKQ 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333433333333333
No 143
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=59.62 E-value=20 Score=36.25 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026797 57 LIVLSVLVCTVICTIVLNFVIKC 79 (233)
Q Consensus 57 iiil~ill~~~i~~l~l~~i~rc 79 (233)
+++++||..++++++++.++..|
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~ 295 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLC 295 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555444444444433333
No 144
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=58.74 E-value=10 Score=32.42 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=5.0
Q ss_pred CCCCCCCCC
Q 026797 29 HNPLNQPPA 37 (233)
Q Consensus 29 ~~~~~~~~~ 37 (233)
..|+++.-.
T Consensus 17 ~tPl~~~Ia 25 (221)
T PF08374_consen 17 ETPLDRNIA 25 (221)
T ss_pred cCCCcCccc
Confidence 466766533
No 145
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=58.73 E-value=18 Score=29.60 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=16.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026797 53 DKNVLIVLSVLVCTVICTIVLNFVIKCALS 82 (233)
Q Consensus 53 ~~~viiil~ill~~~i~~l~l~~i~rc~~r 82 (233)
|..++.-..+++++|..+++++|++|.++-
T Consensus 90 d~~~l~R~~~Vl~g~s~l~i~yfvir~~R~ 119 (163)
T PF06679_consen 90 DSPMLKRALYVLVGLSALAILYFVIRTFRL 119 (163)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444555555555556666665533
No 146
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=58.70 E-value=11 Score=24.38 Aligned_cols=41 Identities=27% Similarity=0.596 Sum_probs=18.1
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHhcC-----CCCccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN-----SSCPKCRH 175 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~ 175 (233)
.|+|....+.. .+|... |.|.-+.+ +..||..+ -.||+|.+
T Consensus 4 ~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 4 RCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp B-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 58888777654 455555 98873221 23455322 25999975
No 147
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.92 E-value=4.6 Score=37.53 Aligned_cols=43 Identities=28% Similarity=0.611 Sum_probs=31.5
Q ss_pred CcccccccccccCcee--eecCCCCCccchhHHHHHHhcCCCCccc
Q 026797 130 AECVICLSDFALGERV--RLLPKCNHGFHVRCIDRWLRSNSSCPKC 173 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~--~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 173 (233)
..|+.|.-.+.-.... ..-. |+|.|+..|...|...+..|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 5788887766544432 2344 89999999999998877777555
No 148
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=57.90 E-value=16 Score=27.69 Aligned_cols=21 Identities=10% Similarity=0.320 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026797 58 IVLSVLVCTVICTIVLNFVIK 78 (233)
Q Consensus 58 iil~ill~~~i~~l~l~~i~r 78 (233)
.+++++.+++++.+++.++.+
T Consensus 2 ~Ll~il~llLll~l~asl~~w 22 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLAW 22 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 149
>PHA02657 hypothetical protein; Provisional
Probab=57.69 E-value=40 Score=24.61 Aligned_cols=32 Identities=6% Similarity=0.328 Sum_probs=17.5
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 026797 44 SLFSSESNLDKNVLIVLSVLVCTVICTIVLNF 75 (233)
Q Consensus 44 ~~~~~~~~~~~~viiil~ill~~~i~~l~l~~ 75 (233)
.|+.-.-+|.+.+++.+.++.+.+++.+++.+
T Consensus 16 ~~~~~~~~~~~imVitvfv~vI~il~flLLYL 47 (95)
T PHA02657 16 NYYYMKINFESILVFTIFIFVVCILIYLLIYL 47 (95)
T ss_pred ceEEEEecchhhhHHHHHHHHHHHHHHHHHHH
Confidence 44434567776666665555555555554433
No 150
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=57.39 E-value=19 Score=26.53 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=16.8
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 026797 48 SESNLDKNVLIVLSVLVCTVICTIVLNFVIK 78 (233)
Q Consensus 48 ~~~~~~~~viiil~ill~~~i~~l~l~~i~r 78 (233)
++..++..+.+++.+++.+.++.+...++.|
T Consensus 30 s~~~ws~vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 30 SGLPWSRVVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred CCCcceeEeeeeehHHHHHHHHHHHHHHHHH
Confidence 5566666665555555555555554444443
No 151
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=56.22 E-value=13 Score=33.88 Aligned_cols=68 Identities=21% Similarity=0.395 Sum_probs=42.3
Q ss_pred CHHHHhhCCceecccccCCC-CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccc
Q 026797 107 NKKALKAFPVVKYSAELKLP-GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRH 175 (233)
Q Consensus 107 ~~~~~~~lp~~~~~~~~~~~-~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 175 (233)
.+..-.-+|...|.+..... ..+..|-.|.++.......+--. |.|.||.+|=.--=..-..||-|.+
T Consensus 307 ARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~-Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 307 ARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCES-CKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchh-ccceeeccchHHHHhhhhcCCCcCC
Confidence 34444456666665532221 23356999977777666555544 9999999995443234456999964
No 152
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=55.95 E-value=31 Score=23.26 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhcc
Q 026797 70 TIVLNFVIKCALSSLR 85 (233)
Q Consensus 70 ~l~l~~i~rc~~r~~~ 85 (233)
++.+.+++|.....+.
T Consensus 20 ~~~Ftl~IRri~~~s~ 35 (58)
T PF13314_consen 20 GASFTLFIRRILINSN 35 (58)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3333445665555443
No 153
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=55.17 E-value=15 Score=30.67 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=10.5
Q ss_pred chhHHHHHH--hcCCCCcc
Q 026797 156 HVRCIDRWL--RSNSSCPK 172 (233)
Q Consensus 156 H~~Ci~~Wl--~~~~~CP~ 172 (233)
...-+..|| ..+..+|.
T Consensus 125 ~G~~~R~~L~~Lr~~~~p~ 143 (186)
T PF07406_consen 125 PGENFRSYLLDLRNSSTPL 143 (186)
T ss_pred ccccHHHHHHHHHhccCCc
Confidence 356788888 45555553
No 154
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=54.93 E-value=7.2 Score=23.62 Aligned_cols=26 Identities=31% Similarity=0.673 Sum_probs=15.1
Q ss_pred cccccccccccCce-------eeecCCCCCccc
Q 026797 131 ECVICLSDFALGER-------VRLLPKCNHGFH 156 (233)
Q Consensus 131 ~C~ICl~~~~~~~~-------~~~lp~C~H~FH 156 (233)
.|+-|-..|..++. ...-+.|+|.|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57888777765432 112334777775
No 155
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=52.56 E-value=52 Score=22.89 Aligned_cols=22 Identities=9% Similarity=0.446 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 026797 64 VCTVICTIVLNFVIKCALSSLR 85 (233)
Q Consensus 64 l~~~i~~l~l~~i~rc~~r~~~ 85 (233)
+.+.||+.++.++++-.+++.+
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3334444444444444444444
No 156
>PF15050 SCIMP: SCIMP protein
Probab=51.40 E-value=23 Score=27.60 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=17.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhhccccc
Q 026797 61 SVLVCTVIC-TIVLNFVIKCALSSLRLLL 88 (233)
Q Consensus 61 ~ill~~~i~-~l~l~~i~rc~~r~~~~~~ 88 (233)
+||.+++|+ .+++.+|.+|.+|+..++.
T Consensus 10 iiLAVaII~vS~~lglIlyCvcR~~lRqG 38 (133)
T PF15050_consen 10 IILAVAIILVSVVLGLILYCVCRWQLRQG 38 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 445555433 3466788899888876554
No 157
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=50.51 E-value=23 Score=31.66 Aligned_cols=9 Identities=11% Similarity=-0.189 Sum_probs=3.6
Q ss_pred HHHHHhhcc
Q 026797 77 IKCALSSLR 85 (233)
Q Consensus 77 ~rc~~r~~~ 85 (233)
++.++||++
T Consensus 280 iWlyrrRK~ 288 (295)
T TIGR01478 280 IWLYRRRKK 288 (295)
T ss_pred HHHHHhhcc
Confidence 333444443
No 158
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.46 E-value=42 Score=23.57 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026797 60 LSVLVCTVICTIVLNFVIK 78 (233)
Q Consensus 60 l~ill~~~i~~l~l~~i~r 78 (233)
+.++++.++.+++-+|+.|
T Consensus 8 l~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 8 LLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444443344443
No 159
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=50.28 E-value=84 Score=24.33 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhcccc
Q 026797 72 VLNFVIKCALSSLRLL 87 (233)
Q Consensus 72 ~l~~i~rc~~r~~~~~ 87 (233)
.+.++.||++|+.|++
T Consensus 103 A~~LLrR~cRr~arrR 118 (126)
T PF03229_consen 103 AGALLRRCCRRAARRR 118 (126)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3345566666655543
No 160
>PTZ00370 STEVOR; Provisional
Probab=48.17 E-value=25 Score=31.45 Aligned_cols=9 Identities=11% Similarity=-0.278 Sum_probs=3.5
Q ss_pred HHHHHhhcc
Q 026797 77 IKCALSSLR 85 (233)
Q Consensus 77 ~rc~~r~~~ 85 (233)
++.++||++
T Consensus 276 iwlyrrRK~ 284 (296)
T PTZ00370 276 IWLYRRRKN 284 (296)
T ss_pred HHHHHhhcc
Confidence 333344443
No 161
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=48.12 E-value=65 Score=22.96 Aligned_cols=16 Identities=13% Similarity=0.247 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhhcc
Q 026797 70 TIVLNFVIKCALSSLR 85 (233)
Q Consensus 70 ~l~l~~i~rc~~r~~~ 85 (233)
+++.++++||++.-..
T Consensus 39 ~fL~~liVRCfrIllD 54 (81)
T PF11057_consen 39 LFLGLLIVRCFRILLD 54 (81)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3334456777765443
No 162
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=47.33 E-value=8.2 Score=26.26 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=17.3
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHH
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRW 163 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 163 (233)
...|.+|...|.--..-..-..||++|+..|....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 46899999999654332233359999999887554
No 163
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=45.52 E-value=17 Score=23.48 Aligned_cols=35 Identities=23% Similarity=0.517 Sum_probs=24.3
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHH
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWL 164 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 164 (233)
..|.+|-..|.....-..-..||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 56999988887644333333599999999976653
No 164
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=45.46 E-value=11 Score=22.81 Aligned_cols=25 Identities=32% Similarity=0.814 Sum_probs=15.5
Q ss_pred cccccccccccCce--------eeecCCCCCccc
Q 026797 131 ECVICLSDFALGER--------VRLLPKCNHGFH 156 (233)
Q Consensus 131 ~C~ICl~~~~~~~~--------~~~lp~C~H~FH 156 (233)
+|+=|...|..++. ++ -+.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~-C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVR-CSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEE-CCCCCCEeC
Confidence 58888888765542 22 234777774
No 165
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=45.28 E-value=14 Score=23.75 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=26.6
Q ss_pred ccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 132 CVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 132 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
|..|-..+..++.+.. . -+..||..| -+|-.|+..|...
T Consensus 1 C~~C~~~I~~~~~~~~-~-~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK-A-MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEE-E-TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEE-e-CCcEEEccc--------cccCCCCCccCCC
Confidence 6778888776554422 2 678899877 4688888777544
No 166
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=45.11 E-value=17 Score=33.02 Aligned_cols=48 Identities=27% Similarity=0.665 Sum_probs=33.5
Q ss_pred CcccccccccccCceeeecC-CCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 130 AECVICLSDFALGERVRLLP-KCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..|+||.+.....+.. .+| .|++..|..|...-...+.+||.||....
T Consensus 250 ~s~p~~~~~~~~~d~~-~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSN-FLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccc-cccccccccchhhhhhcccccCCCCCccCCccc
Confidence 6899999987544422 333 27777777777776677889999996543
No 167
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=44.81 E-value=14 Score=25.62 Aligned_cols=12 Identities=42% Similarity=1.304 Sum_probs=8.9
Q ss_pred ccchhHHHHHHh
Q 026797 154 GFHVRCIDRWLR 165 (233)
Q Consensus 154 ~FH~~Ci~~Wl~ 165 (233)
.||..|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 699999999985
No 168
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=44.15 E-value=12 Score=34.29 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=25.1
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026797 48 SESNLDKNVLIVLSVLVCTVICTIVLNFVIKCALSSLR 85 (233)
Q Consensus 48 ~~~~~~~~viiil~ill~~~i~~l~l~~i~rc~~r~~~ 85 (233)
....|+..+++|+++-+++-++++++.-++-|++|+++
T Consensus 311 P~d~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~r~ 348 (350)
T PF15065_consen 311 PVDSFSPLVIMIMAVGLGVPLLLLILGGLYVCLRRRRK 348 (350)
T ss_pred CccchhHHHHHHHHHHhhHHHHHHHHhhheEEEecccc
Confidence 34677888888888887776666665555555554443
No 169
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=43.70 E-value=16 Score=32.59 Aligned_cols=17 Identities=0% Similarity=-0.109 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhhc
Q 026797 68 ICTIVLNFVIKCALSSL 84 (233)
Q Consensus 68 i~~l~l~~i~rc~~r~~ 84 (233)
..+++++++.+++.||+
T Consensus 282 a~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 282 AGLVLIVLIAYLIGRRR 298 (306)
T ss_pred HHHHHHHHHhheeEecc
Confidence 33333344444444443
No 170
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=42.56 E-value=48 Score=26.71 Aligned_cols=13 Identities=23% Similarity=0.560 Sum_probs=5.1
Q ss_pred chhhHHHHHHHHH
Q 026797 53 DKNVLIVLSVLVC 65 (233)
Q Consensus 53 ~~~viiil~ill~ 65 (233)
+..+++.+++.++
T Consensus 118 ~nklilaisvtvv 130 (154)
T PF14914_consen 118 NNKLILAISVTVV 130 (154)
T ss_pred cchhHHHHHHHHH
Confidence 3334444444443
No 171
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=40.94 E-value=9 Score=34.28 Aligned_cols=12 Identities=25% Similarity=0.108 Sum_probs=0.0
Q ss_pred hhhccccccccc
Q 026797 12 LFQDFPRKLHSR 23 (233)
Q Consensus 12 ~~~~~~~~~~~r 23 (233)
|..+|....++.
T Consensus 91 m~pef~V~svsv 102 (290)
T PF05454_consen 91 MGPEFKVKSVSV 102 (290)
T ss_dssp ------------
T ss_pred hCCCCceeEEEE
Confidence 444444433333
No 172
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.92 E-value=6.3 Score=31.29 Aligned_cols=49 Identities=43% Similarity=0.676 Sum_probs=25.9
Q ss_pred CCCCcccccccc-cccCceeeecCCCCCccchhHHHHH-HhcCC---CCcccccc
Q 026797 127 GLDAECVICLSD-FALGERVRLLPKCNHGFHVRCIDRW-LRSNS---SCPKCRHC 176 (233)
Q Consensus 127 ~~~~~C~ICl~~-~~~~~~~~~lp~C~H~FH~~Ci~~W-l~~~~---~CP~CR~~ 176 (233)
+.+..|-||+.. |.+|-.-... .|.--||..|-..- |+.++ .|-+|+..
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~-YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCS-YCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhcccccccCcccc-hhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 456899999865 5443211111 13334555554433 22333 48899764
No 173
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=40.59 E-value=22 Score=20.20 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=9.8
Q ss_pred cccccccccccCceeeecCCCCCccchhHH
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCI 160 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci 160 (233)
.|.+|-.....+..-+-. .|+-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~-~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCS-ECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-T-TT-----HHHH
T ss_pred cCCcCCCcCCCCceEECc-cCCCccChhcC
Confidence 478888776652223333 49999999885
No 174
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.31 E-value=46 Score=22.37 Aligned_cols=46 Identities=26% Similarity=0.667 Sum_probs=33.0
Q ss_pred CcccccccccccCc-eeeecCCCC--CccchhHHHHHHhcCCCCcccccccccc
Q 026797 130 AECVICLSDFALGE-RVRLLPKCN--HGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 130 ~~C~ICl~~~~~~~-~~~~lp~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..|-.|-.++..+. ..++ |. .-|+.+|.+.-| +..||.|-..++..
T Consensus 6 pnCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 46778877776655 3333 54 579999999865 67899997766543
No 175
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=39.83 E-value=9.3 Score=24.97 Aligned_cols=12 Identities=42% Similarity=0.800 Sum_probs=6.6
Q ss_pred CCcccccccccc
Q 026797 169 SCPKCRHCLIET 180 (233)
Q Consensus 169 ~CP~CR~~l~~~ 180 (233)
.||+|.+++.+.
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 799999988665
No 176
>PHA03049 IMV membrane protein; Provisional
Probab=39.00 E-value=1.2e+02 Score=21.08 Aligned_cols=22 Identities=9% Similarity=0.480 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 026797 64 VCTVICTIVLNFVIKCALSSLR 85 (233)
Q Consensus 64 l~~~i~~l~l~~i~rc~~r~~~ 85 (233)
+.++||+.++.++++-.+++.+
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3334444444445544555544
No 177
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHA03240 envelope glycoprotein M; Provisional
Probab=38.42 E-value=42 Score=28.85 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026797 55 NVLIVLSVLVCTVICTIVLNFVIKCALS 82 (233)
Q Consensus 55 ~viiil~ill~~~i~~l~l~~i~rc~~r 82 (233)
.+|||++|+++++|+++++-+--|++-+
T Consensus 213 ~~WIiilIIiIiIIIL~cfKiPQKl~dK 240 (258)
T PHA03240 213 IAWIFIAIIIIIVIILFFFKIPQKLFDK 240 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3455555555444433333333333333
No 179
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=37.35 E-value=4.4 Score=35.93 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=19.0
Q ss_pred CCcccccccccccCceeeecC--CCCCccchhHHHHHHhcCCCCcccccc
Q 026797 129 DAECVICLSDFALGERVRLLP--KCNHGFHVRCIDRWLRSNSSCPKCRHC 176 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 176 (233)
...|+||-..-.-+. ++.-. +-.|.+|.-|-..|-..+..||.|-..
T Consensus 172 ~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 368999977632211 11100 123566667777887777889999553
No 180
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=36.94 E-value=37 Score=23.40 Aligned_cols=15 Identities=13% Similarity=0.454 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHH
Q 026797 56 VLIVLSVLVCTVICT 70 (233)
Q Consensus 56 viiil~ill~~~i~~ 70 (233)
||+++++++.+++++
T Consensus 1 MWIiiSIvLai~lLI 15 (66)
T PF07438_consen 1 MWIIISIVLAIALLI 15 (66)
T ss_pred ChhhHHHHHHHHHHH
Confidence 577777776655433
No 181
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=36.89 E-value=53 Score=29.56 Aligned_cols=13 Identities=23% Similarity=0.202 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhcc
Q 026797 73 LNFVIKCALSSLR 85 (233)
Q Consensus 73 l~~i~rc~~r~~~ 85 (233)
+.+|++..+|++|
T Consensus 271 IMvIIYLILRYRR 283 (299)
T PF02009_consen 271 IMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHH
Confidence 3344556666655
No 182
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=36.88 E-value=11 Score=35.58 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026797 50 SNLDKNVLIVLSVLVCTVICTIVLNFVIKCALSSL 84 (233)
Q Consensus 50 ~~~~~~viiil~ill~~~i~~l~l~~i~rc~~r~~ 84 (233)
......+.+++++++++++++++..++++|.+|++
T Consensus 349 ~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~ 383 (439)
T PF02480_consen 349 SRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRR 383 (439)
T ss_dssp -----------------------------------
T ss_pred CcccchHHHHHHHHHHHHHHHHHhheeeeehhccc
Confidence 44445555555555555554444444444444433
No 183
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=36.18 E-value=43 Score=30.82 Aligned_cols=7 Identities=29% Similarity=0.102 Sum_probs=2.8
Q ss_pred HHHhhcc
Q 026797 79 CALSSLR 85 (233)
Q Consensus 79 c~~r~~~ 85 (233)
..+|++|
T Consensus 331 LILRYRR 337 (353)
T TIGR01477 331 LILRYRR 337 (353)
T ss_pred HHHHhhh
Confidence 3344433
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=36.09 E-value=30 Score=35.01 Aligned_cols=48 Identities=29% Similarity=0.657 Sum_probs=30.6
Q ss_pred CCCCCccccccccccc----C-----ceeeecCCCCCccchhHHHHHHhcCCCCccccccc
Q 026797 126 PGLDAECVICLSDFAL----G-----ERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCL 177 (233)
Q Consensus 126 ~~~~~~C~ICl~~~~~----~-----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 177 (233)
...+..|+-|-..|-. | ....+.|.|.|.-|..=|. ..+.||+|...+
T Consensus 1128 ~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1128 DPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSME 1184 (1189)
T ss_pred CccCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChh
Confidence 3445678777777632 1 2234566799998875543 357899997643
No 185
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=35.87 E-value=27 Score=25.94 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=22.3
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHH
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRW 163 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 163 (233)
...|.||......-.+.... .|...||..|...+
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~-~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHP-GCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCCCceeEEcCCC-CCCcCCCHHHHHHC
Confidence 46899998873221122222 38889999998663
No 186
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.85 E-value=21 Score=31.26 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=26.7
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHh
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR 165 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~ 165 (233)
-+.|+.||..+.+ ..+.+ =||+|..+||.+++.
T Consensus 43 FdcCsLtLqPc~d---Pvit~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRD---PVITP-DGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccC---CccCC-CCeeeeHHHHHHHHH
Confidence 4789999999876 34555 799999999998864
No 187
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=35.65 E-value=23 Score=31.10 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=29.5
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCC--CCcc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS--SCPK 172 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~ 172 (233)
+..|+|=...+.+. + +-.+|||+|-.+-|...+.... .||+
T Consensus 176 s~rdPis~~~I~nP--v-iSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--V-ISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cccCchhhhhhhch--h-hhcCcCcchhhhhHHHHhccCceeeccc
Confidence 36788876666542 2 2335999999999999987644 5885
No 188
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=35.60 E-value=32 Score=25.59 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026797 56 VLIVLSVLVCTVICTIVLNFVIKCALSSL 84 (233)
Q Consensus 56 viiil~ill~~~i~~l~l~~i~rc~~r~~ 84 (233)
.|-+++....++++++++.+++.|..|++
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 45555554444444444444555554444
No 189
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=35.16 E-value=7.1 Score=34.89 Aligned_cols=37 Identities=27% Similarity=0.575 Sum_probs=28.2
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcC
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN 167 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~ 167 (233)
.+|.+|++++..+....... |.-+||..|+..|+...
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhh-ccccccccccccccccc
Confidence 48999999998655555554 66699999999997653
No 190
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.15 E-value=20 Score=32.02 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=28.2
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCC
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS 168 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~ 168 (233)
-..|.+|.|.+++..-|..-..=.|.||.-|-.+-++.+.
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 3679999999887444421112369999999999887543
No 191
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.10 E-value=21 Score=20.91 Aligned_cols=19 Identities=21% Similarity=0.488 Sum_probs=11.8
Q ss_pred CCCccchhHHHHHHhcCCCCccccc
Q 026797 151 CNHGFHVRCIDRWLRSNSSCPKCRH 175 (233)
Q Consensus 151 C~H~FH~~Ci~~Wl~~~~~CP~CR~ 175 (233)
|||++-..- ....||+|..
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCEECCCc------CCCcCcCCCC
Confidence 676655432 3447999965
No 192
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=33.88 E-value=29 Score=30.94 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=22.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026797 53 DKNVLIVLSVLVCTVICTIVLNFVIKCALSSLR 85 (233)
Q Consensus 53 ~~~viiil~ill~~~i~~l~l~~i~rc~~r~~~ 85 (233)
+..+-|++++.|+++++++++.+++...+.+..
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~~g 302 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSRAG 302 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEecccccc
Confidence 445556677777777777777777766666653
No 193
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=33.49 E-value=1.1e+02 Score=23.66 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=10.1
Q ss_pred hhhHHHhcCCCHHHHhhCC
Q 026797 97 SATKAINKGINKKALKAFP 115 (233)
Q Consensus 97 ~~~~~~~~~~~~~~~~~lp 115 (233)
.+++....|-+-+.++++.
T Consensus 95 vSrRL~aEgKdIdeLKKiN 113 (128)
T PF15145_consen 95 VSRRLTAEGKDIDELKKIN 113 (128)
T ss_pred HHHHHHhccCCHHHHHHHH
Confidence 3444455555556666543
No 194
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=33.41 E-value=14 Score=34.42 Aligned_cols=44 Identities=23% Similarity=0.603 Sum_probs=0.0
Q ss_pred CCcccccccccccC-----------ceeeecCCCCCccchhHHHHHHh------cCCCCcccccc
Q 026797 129 DAECVICLSDFALG-----------ERVRLLPKCNHGFHVRCIDRWLR------SNSSCPKCRHC 176 (233)
Q Consensus 129 ~~~C~ICl~~~~~~-----------~~~~~lp~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~ 176 (233)
-..|++=|..+.-. +....+. |||++.. ..|-. ...+||+||..
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~-CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLN-CGHVHGY---HNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeecc-ccceeee---cccccccccccccccCCCcccc
Confidence 45688776654321 1223454 9987653 34742 24479999873
No 195
>PTZ00046 rifin; Provisional
Probab=33.40 E-value=47 Score=30.63 Aligned_cols=7 Identities=29% Similarity=0.102 Sum_probs=2.9
Q ss_pred HHHhhcc
Q 026797 79 CALSSLR 85 (233)
Q Consensus 79 c~~r~~~ 85 (233)
..+|++|
T Consensus 336 LILRYRR 342 (358)
T PTZ00046 336 LILRYRR 342 (358)
T ss_pred HHHHhhh
Confidence 3444443
No 196
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=32.99 E-value=13 Score=29.93 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 026797 55 NVLIVLSVLVCTVICTIVLNFVIK 78 (233)
Q Consensus 55 ~viiil~ill~~~i~~l~l~~i~r 78 (233)
.+.+.+++.++++++++++.+++.
T Consensus 9 sv~i~igi~Ll~lLl~cgiGcvwh 32 (158)
T PF11770_consen 9 SVAISIGISLLLLLLLCGIGCVWH 32 (158)
T ss_pred hHHHHHHHHHHHHHHHHhcceEEE
Confidence 344444444444444444444333
No 197
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.99 E-value=45 Score=23.02 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=15.0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026797 50 SNLDKNVLIVLSVLVCTVICTIVLNFVIKC 79 (233)
Q Consensus 50 ~~~~~~viiil~ill~~~i~~l~l~~i~rc 79 (233)
..+++-++++|+|.-.+++++++.+.++-+
T Consensus 8 KGlnPGlIVLlvV~g~ll~flvGnyvlY~Y 37 (69)
T PF04689_consen 8 KGLNPGLIVLLVVAGLLLVFLVGNYVLYVY 37 (69)
T ss_pred cCCCCCeEEeehHHHHHHHHHHHHHHHHHH
Confidence 345555666555555555544444444333
No 198
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=32.07 E-value=56 Score=24.62 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=28.3
Q ss_pred CCcccccccccccCceeee-----cCCC---CCccchhHHHHHHhc---------CCCCccccc
Q 026797 129 DAECVICLSDFALGERVRL-----LPKC---NHGFHVRCIDRWLRS---------NSSCPKCRH 175 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~-----lp~C---~H~FH~~Ci~~Wl~~---------~~~CP~CR~ 175 (233)
...|..|.....+. ++.- .+.| .=.|+..|+..++.. +-.||.||.
T Consensus 7 g~~CHqCrqKt~~~-~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDF-KTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCC-ceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 45677777754321 1111 1236 667999999888642 125999987
No 199
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=31.92 E-value=26 Score=30.52 Aligned_cols=40 Identities=30% Similarity=0.485 Sum_probs=29.7
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCC--CCc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS--SCP 171 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP 171 (233)
+..|+|-+..+.. ..+..+|+|.|-.+-|...++... .||
T Consensus 189 ~nrCpitl~p~~~---pils~kcnh~~e~D~I~~~lq~~~trvcp 230 (275)
T COG5627 189 SNRCPITLNPDFY---PILSSKCNHKPEMDLINKKLQVECTRVCP 230 (275)
T ss_pred cccCCcccCcchh---HHHHhhhcccccHHHHHHHhcCCceeecc
Confidence 4689998877543 333346999999999999987554 466
No 200
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=31.61 E-value=23 Score=26.49 Aligned_cols=23 Identities=13% Similarity=0.379 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026797 57 LIVLSVLVCTVICTIVLNFVIKC 79 (233)
Q Consensus 57 iiil~ill~~~i~~l~l~~i~rc 79 (233)
..++.+.+++++|++++++++.+
T Consensus 61 ~~iili~lls~v~IlVily~IyY 83 (101)
T PF06024_consen 61 GNIILISLLSFVCILVILYAIYY 83 (101)
T ss_pred ccchHHHHHHHHHHHHHHhhheE
Confidence 34444445555555555554443
No 201
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=31.31 E-value=31 Score=22.45 Aligned_cols=24 Identities=42% Similarity=0.988 Sum_probs=13.6
Q ss_pred CCCCCccchhHHHHHHhcCCCCccc
Q 026797 149 PKCNHGFHVRCIDRWLRSNSSCPKC 173 (233)
Q Consensus 149 p~C~H~FH~~Ci~~Wl~~~~~CP~C 173 (233)
+.|||.|...=-+. ......||.|
T Consensus 32 ~~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 32 PKCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCCeeEccHhhh-ccCCCCCCCC
Confidence 34777766532222 2455679987
No 202
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=30.98 E-value=77 Score=23.59 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=12.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH
Q 026797 52 LDKNVLIVLSVLVCTVICTIVLNFVI 77 (233)
Q Consensus 52 ~~~~viiil~ill~~~i~~l~l~~i~ 77 (233)
++.++++.+++++++++++.++..++
T Consensus 12 ie~sl~~~~~~l~~~~~~l~ll~~ll 37 (108)
T PF07219_consen 12 IETSLWVALILLLLLFVVLYLLLRLL 37 (108)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444444444333333
No 203
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=30.72 E-value=1.4e+02 Score=23.36 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=4.1
Q ss_pred chhhhcc
Q 026797 10 TQLFQDF 16 (233)
Q Consensus 10 ~~~~~~~ 16 (233)
++|+|+.
T Consensus 14 ~~l~q~~ 20 (129)
T PF02060_consen 14 SKLWQET 20 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5566664
No 204
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=30.54 E-value=1e+02 Score=21.88 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026797 57 LIVLSVLVCTVICTIVL 73 (233)
Q Consensus 57 iiil~ill~~~i~~l~l 73 (233)
+++..+++.+|+..+.+
T Consensus 6 l~~plivf~ifVap~WL 22 (75)
T PF06667_consen 6 LFVPLIVFMIFVAPIWL 22 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444433
No 205
>PLN02189 cellulose synthase
Probab=30.12 E-value=52 Score=34.51 Aligned_cols=50 Identities=20% Similarity=0.495 Sum_probs=32.7
Q ss_pred CCccccccccccc---CceeeecCCCCCccchhHHHHHH-hcCCCCcccccccc
Q 026797 129 DAECVICLSDFAL---GERVRLLPKCNHGFHVRCIDRWL-RSNSSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~ 178 (233)
...|.||-+++.. |+.-.....|+--.|..|.+-=- ..++.||-|++..-
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4589999999653 33333333466668899984322 34668999988655
No 206
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=28.90 E-value=14 Score=25.41 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q 026797 58 IVLSVLVCT 66 (233)
Q Consensus 58 iil~ill~~ 66 (233)
+|.++++++
T Consensus 14 vIaG~Vvgl 22 (64)
T PF01034_consen 14 VIAGGVVGL 22 (64)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333333333
No 207
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=28.77 E-value=38 Score=24.01 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=22.2
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHH
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDR 162 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 162 (233)
...|.+|....-.......- +|.-.||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~-~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHP-GCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCC-CCCcEEChHHHcc
Confidence 35799998763332233333 5999999999654
No 208
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.48 E-value=1.4e+02 Score=19.89 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 026797 57 LIVLSVLVC 65 (233)
Q Consensus 57 iiil~ill~ 65 (233)
+++++++++
T Consensus 23 ~il~~f~~G 31 (68)
T PF06305_consen 23 LILIAFLLG 31 (68)
T ss_pred HHHHHHHHH
Confidence 333333333
No 209
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=28.35 E-value=1.4e+02 Score=21.86 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=28.5
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
..|.-|...+.--|. .| |-.|+..+..|..|+.++..
T Consensus 34 S~C~~C~~~L~~~~l---IP----------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDL---IP----------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CcCcCCCCcCccccc---ch----------HHHHHHhCCCCcccCCCCCh
Confidence 579999888765443 35 66799999999999988753
No 210
>PF15069 FAM163: FAM163 family
Probab=28.24 E-value=34 Score=27.39 Aligned_cols=8 Identities=50% Similarity=1.294 Sum_probs=5.1
Q ss_pred CCCCcccc
Q 026797 167 NSSCPKCR 174 (233)
Q Consensus 167 ~~~CP~CR 174 (233)
+..||.|.
T Consensus 91 ~~~CptCS 98 (143)
T PF15069_consen 91 RSYCPTCS 98 (143)
T ss_pred CCcCCCCC
Confidence 44588883
No 211
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=28.18 E-value=21 Score=38.68 Aligned_cols=49 Identities=29% Similarity=0.562 Sum_probs=37.7
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCC----CCccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS----SCPKCRHCL 177 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~l 177 (233)
....|-+|+...+..+.+... .|.-.||..|+..-+..-. .||-||..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~-~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCD-ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhH-hhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 456899999998775555444 4999999999999875433 699998754
No 212
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=28.14 E-value=63 Score=21.18 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=13.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q 026797 52 LDKNVLIVLSVLVCTVICTIVLNFV 76 (233)
Q Consensus 52 ~~~~viiil~ill~~~i~~l~l~~i 76 (233)
+|.-.+-+-+.++.++++++++.++
T Consensus 9 YDy~tLrigGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 9 YDYETLRIGGLIFAGVLFILGILII 33 (50)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhhccchHHHHHHHHHHHHHH
Confidence 3444455555555555555555443
No 213
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=28.00 E-value=7.6 Score=31.45 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026797 55 NVLIVLSVLVCTVICTIVLNFVIKCALSS 83 (233)
Q Consensus 55 ~viiil~ill~~~i~~l~l~~i~rc~~r~ 83 (233)
+++|-++|-+++.++++++.++++|+.|+
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf~~c~r~ 77 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVFIFCIRR 77 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhheeEEEec
Confidence 44433333333333333333333333333
No 214
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=27.52 E-value=70 Score=29.17 Aligned_cols=50 Identities=24% Similarity=0.554 Sum_probs=33.1
Q ss_pred CCCcccccccccc---------------cCc-eeeecCCCCCccchhHHHHHHhc---------CCCCcccccccc
Q 026797 128 LDAECVICLSDFA---------------LGE-RVRLLPKCNHGFHVRCIDRWLRS---------NSSCPKCRHCLI 178 (233)
Q Consensus 128 ~~~~C~ICl~~~~---------------~~~-~~~~lp~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~l~ 178 (233)
.+.+|++|+..=. .+. .-...| |||+--..-..-|-+. +..||.|-..|.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 4678999987611 011 113467 9999888888889642 235999977654
No 215
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=27.29 E-value=1.3e+02 Score=23.51 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 026797 70 TIVLNFVIKCAL 81 (233)
Q Consensus 70 ~l~l~~i~rc~~ 81 (233)
+|+++++.|-+.
T Consensus 48 vi~~~LLgrsi~ 59 (125)
T PF15048_consen 48 VISFFLLGRSIQ 59 (125)
T ss_pred HHHHHHHHHHhH
Confidence 333444444433
No 216
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=27.22 E-value=18 Score=23.67 Aligned_cols=19 Identities=37% Similarity=0.815 Sum_probs=14.5
Q ss_pred eeecCCCCCccchhHHHHH
Q 026797 145 VRLLPKCNHGFHVRCIDRW 163 (233)
Q Consensus 145 ~~~lp~C~H~FH~~Ci~~W 163 (233)
...-+.|+|.|+..|...|
T Consensus 40 ~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eeECCCCCCeECCCCCCcC
Confidence 3444458999999998888
No 217
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=27.22 E-value=30 Score=34.34 Aligned_cols=29 Identities=31% Similarity=0.990 Sum_probs=22.6
Q ss_pred CCCCccchhHHHHHHhcC-----CCCcccccccc
Q 026797 150 KCNHGFHVRCIDRWLRSN-----SSCPKCRHCLI 178 (233)
Q Consensus 150 ~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~~l~ 178 (233)
.|+-.||..|+..|+... -.||-||.+..
T Consensus 40 ~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~ 73 (694)
T KOG4443|consen 40 DCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEA 73 (694)
T ss_pred hhcccCCcchhhHHHhHHHhcCCcccCCceeeee
Confidence 489999999999998532 35888887643
No 218
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=27.22 E-value=31 Score=33.13 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=11.2
Q ss_pred CCcccccccccccCc
Q 026797 129 DAECVICLSDFALGE 143 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~ 143 (233)
..-|+-||+++...+
T Consensus 26 ~~yCp~CL~~~p~~e 40 (483)
T PF05502_consen 26 SYYCPNCLFEVPSSE 40 (483)
T ss_pred eeECccccccCChhh
Confidence 357999999986544
No 219
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=26.68 E-value=85 Score=20.90 Aligned_cols=15 Identities=13% Similarity=0.419 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHH
Q 026797 55 NVLIVLSVLVCTVIC 69 (233)
Q Consensus 55 ~viiil~ill~~~i~ 69 (233)
++|+|+++++++++.
T Consensus 4 ~~wlIIviVlgvIig 18 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIG 18 (55)
T ss_pred hhhHHHHHHHHHHHh
Confidence 445555444444443
No 220
>PRK14710 hypothetical protein; Provisional
Probab=26.48 E-value=44 Score=23.54 Aligned_cols=22 Identities=27% Similarity=0.788 Sum_probs=11.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHH
Q 026797 51 NLDKNVLIVLSVLVCTVICTIV 72 (233)
Q Consensus 51 ~~~~~viiil~ill~~~i~~l~ 72 (233)
|.+.-++.|+.+++++++|++-
T Consensus 7 n~skm~ififaiii~v~lcv~t 28 (86)
T PRK14710 7 NLSKMIIFIFAIIIIVVLCVIT 28 (86)
T ss_pred chhHHHHHHHHHHHHHHHHHhh
Confidence 4444455555555555555443
No 221
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.45 E-value=33 Score=27.87 Aligned_cols=45 Identities=22% Similarity=0.525 Sum_probs=29.4
Q ss_pred cccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 133 VICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 133 ~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
.||+.--...+....-|.=.+.||..|-.+-+ ..||.|..+|-..
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI---~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTI---TSCPNCSTPIRGD 52 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHH---HHCcCCCCCCCCc
Confidence 46776655444444444456789999977743 3599998887654
No 222
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.43 E-value=20 Score=33.84 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=26.5
Q ss_pred CcccccccccccCcee-----eecCCCCCccchhHHHHHHhc
Q 026797 130 AECVICLSDFALGERV-----RLLPKCNHGFHVRCIDRWLRS 166 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~-----~~lp~C~H~FH~~Ci~~Wl~~ 166 (233)
..|+.|....+.+... ... .|+|.||+.|+..|-..
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~-~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSA-SCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccC-CcCCeeceeeecccccc
Confidence 5599999888766522 122 39999999999998644
No 223
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=26.40 E-value=53 Score=24.74 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=26.9
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHH
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWL 164 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 164 (233)
.|.||-+++..|+.-..+.+ -.-|..|+..=.
T Consensus 4 kC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK--GPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecC--CcEeHHHHHHHH
Confidence 69999999999998888774 577999987754
No 224
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=26.30 E-value=91 Score=22.41 Aligned_cols=50 Identities=24% Similarity=0.459 Sum_probs=18.2
Q ss_pred CCcccccccccccC---ceeeecCCCCCccchhHHHHHH-hcCCCCcccccccc
Q 026797 129 DAECVICLSDFALG---ERVRLLPKCNHGFHVRCIDRWL-RSNSSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~~~---~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~ 178 (233)
...|.||-+++.-. +.-...-.|+--.++.|..-=. ..++.||-|+...-
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 46899999986432 2211112355566777765443 35678999997654
No 225
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=26.18 E-value=1.5e+02 Score=21.21 Aligned_cols=19 Identities=5% Similarity=0.104 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 026797 67 VICTIVLNFVIKCALSSLR 85 (233)
Q Consensus 67 ~i~~l~l~~i~rc~~r~~~ 85 (233)
|++++++.++++...+..+
T Consensus 19 F~fL~lLi~~i~~~~~~~~ 37 (82)
T TIGR01195 19 FLFLSLLIYAVRGMGKVVG 37 (82)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444455554444433
No 226
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=25.74 E-value=71 Score=27.58 Aligned_cols=7 Identities=14% Similarity=0.524 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 026797 72 VLNFVIK 78 (233)
Q Consensus 72 ~l~~i~r 78 (233)
++++++|
T Consensus 243 ~mvl~ir 249 (251)
T PF09753_consen 243 MMVLFIR 249 (251)
T ss_pred HHHHHhe
Confidence 3333443
No 227
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=25.67 E-value=54 Score=26.43 Aligned_cols=25 Identities=36% Similarity=0.760 Sum_probs=17.1
Q ss_pred CCCccchhHHHHHHhc-----------CCCCcccccccccc
Q 026797 151 CNHGFHVRCIDRWLRS-----------NSSCPKCRHCLIET 180 (233)
Q Consensus 151 C~H~FH~~Ci~~Wl~~-----------~~~CP~CR~~l~~~ 180 (233)
++|.|-. |+.. --+||+|-..-+..
T Consensus 10 ~gH~FEg-----WF~ss~~fd~Q~~~glv~CP~Cgs~~V~K 45 (148)
T PF06676_consen 10 NGHEFEG-----WFRSSAAFDRQQARGLVSCPVCGSTEVSK 45 (148)
T ss_pred CCCccce-----ecCCHHHHHHHHHcCCccCCCCCCCeEee
Confidence 6788765 8753 23799997766554
No 228
>PRK11827 hypothetical protein; Provisional
Probab=25.63 E-value=26 Score=23.85 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=15.2
Q ss_pred HHHHhcCCCCcccccccccc
Q 026797 161 DRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 161 ~~Wl~~~~~CP~CR~~l~~~ 180 (233)
+.||..--.||+|+..+...
T Consensus 2 d~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred ChHHHhheECCCCCCcCeEc
Confidence 45777777899999988654
No 229
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=25.54 E-value=1.4e+02 Score=20.50 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026797 61 SVLVCTVICTIVLNFVIKCAL 81 (233)
Q Consensus 61 ~ill~~~i~~l~l~~i~rc~~ 81 (233)
+++++++|++.+..+..++..
T Consensus 9 ii~l~AlI~~pLGyl~~~~~~ 29 (62)
T PF11120_consen 9 IIILCALIFFPLGYLARRWLP 29 (62)
T ss_pred HHHHHHHHHHhHHHHHHHHhH
Confidence 344455444444444444433
No 230
>PRK06287 cobalt transport protein CbiN; Validated
Probab=25.43 E-value=2.2e+02 Score=21.45 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=4.0
Q ss_pred CCCCCCCCC
Q 026797 40 PPHPSLFSS 48 (233)
Q Consensus 40 ~p~~~~~~~ 48 (233)
+|-+.|...
T Consensus 64 a~lpDY~i~ 72 (107)
T PRK06287 64 SPMPDYSIP 72 (107)
T ss_pred CCCCCCCCC
Confidence 344456433
No 231
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=25.28 E-value=1.7e+02 Score=21.19 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=18.3
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026797 50 SNLDKNVLIVLSVLVCTVICTIVLNFVIKCALSSLR 85 (233)
Q Consensus 50 ~~~~~~viiil~ill~~~i~~l~l~~i~rc~~r~~~ 85 (233)
+.+-.|+++.+.+.++.+++.+.+...++.+....+
T Consensus 10 ~~lVvNiil~llvc~~~liv~~AlL~~IqLC~~cc~ 45 (82)
T PF02723_consen 10 HGLVVNIILWLLVCLVVLIVCIALLQLIQLCFQCCR 45 (82)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555555555555555555554444433
No 232
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=24.90 E-value=32 Score=34.53 Aligned_cols=33 Identities=24% Similarity=0.591 Sum_probs=25.4
Q ss_pred eeecCCCCCccchhHHHHHHhcCCCCccccccc
Q 026797 145 VRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCL 177 (233)
Q Consensus 145 ~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 177 (233)
+...|.|.-.||.+=+..-..++..||.||.+-
T Consensus 1044 it~Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~ 1076 (1081)
T KOG1538|consen 1044 ITMCPSCFQMFHSEDFELLVLQKGHCPFCRTSK 1076 (1081)
T ss_pred hhhCchHHhhhccchhhHHHHhcCCCCcccccc
Confidence 445567888888877777667788899999874
No 233
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=24.88 E-value=33 Score=30.72 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=24.2
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHH
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDR 162 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 162 (233)
..|.||+....+.+.+-.- -|.-.||.-|+.-
T Consensus 315 ~lC~IC~~P~~E~E~~FCD-~CDRG~HT~CVGL 346 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCD-VCDRGPHTLCVGL 346 (381)
T ss_pred HhhhccCCcccchheeccc-cccCCCCcccccc
Confidence 4699999887776665443 4999999999753
No 234
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=24.86 E-value=1.2e+02 Score=24.50 Aligned_cols=8 Identities=13% Similarity=0.447 Sum_probs=3.2
Q ss_pred HHHHHHhh
Q 026797 76 VIKCALSS 83 (233)
Q Consensus 76 i~rc~~r~ 83 (233)
++.|..|+
T Consensus 49 i~lcssRK 56 (189)
T PF05568_consen 49 IYLCSSRK 56 (189)
T ss_pred HHHHhhhh
Confidence 33444333
No 235
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=24.76 E-value=1.6e+02 Score=20.88 Aligned_cols=23 Identities=13% Similarity=0.026 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026797 58 IVLSVLVCTVICTIVLNFVIKCA 80 (233)
Q Consensus 58 iil~ill~~~i~~l~l~~i~rc~ 80 (233)
.++.+.+++|+++++...++.-+
T Consensus 4 ~fl~~plivf~ifVap~WL~lHY 26 (75)
T PF06667_consen 4 EFLFVPLIVFMIFVAPIWLILHY 26 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554454433
No 236
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=24.71 E-value=1.3e+02 Score=28.02 Aligned_cols=30 Identities=13% Similarity=0.466 Sum_probs=11.9
Q ss_pred CchhhHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 026797 52 LDKNVLIVLSVLVCT-VICTIVLNFVIKCALS 82 (233)
Q Consensus 52 ~~~~viiil~ill~~-~i~~l~l~~i~rc~~r 82 (233)
|-..+++.++|-+++ +++++++.++. |+.|
T Consensus 281 y~~d~~vtl~iPl~i~llL~llLs~Im-c~rR 311 (386)
T PF05510_consen 281 YFPDFLVTLAIPLIIALLLLLLLSYIM-CCRR 311 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh-eech
Confidence 334444444333333 33333343333 4433
No 237
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=24.69 E-value=1e+02 Score=22.25 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 026797 55 NVLIVLSVLVCTVICTIVLN 74 (233)
Q Consensus 55 ~viiil~ill~~~i~~l~l~ 74 (233)
..++.+++++.+.+++..++
T Consensus 7 ~~iialiv~~iiaIvvW~iv 26 (81)
T PF00558_consen 7 LAIIALIVALIIAIVVWTIV 26 (81)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555544444443
No 238
>PLN02436 cellulose synthase A
Probab=24.65 E-value=74 Score=33.57 Aligned_cols=50 Identities=22% Similarity=0.486 Sum_probs=32.1
Q ss_pred CCcccccccccc---cCceeeecCCCCCccchhHHHHHH-hcCCCCcccccccc
Q 026797 129 DAECVICLSDFA---LGERVRLLPKCNHGFHVRCIDRWL-RSNSSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~---~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~ 178 (233)
...|.||-+++. +|+.-.-...|+--.|..|.+-=- ..+++||-|++..-
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 458999999963 334332222355558899984322 34668999988654
No 239
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=24.46 E-value=39 Score=22.92 Aligned_cols=14 Identities=21% Similarity=0.790 Sum_probs=10.1
Q ss_pred CCCCcccccccccc
Q 026797 167 NSSCPKCRHCLIET 180 (233)
Q Consensus 167 ~~~CP~CR~~l~~~ 180 (233)
...||+|..++...
T Consensus 39 ~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 39 EPVCPLCKSPMVSG 52 (59)
T ss_pred CccCCCcCCccccc
Confidence 45799998876554
No 240
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=24.31 E-value=19 Score=32.40 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=26.5
Q ss_pred CCccccccccccc--------CceeeecCCCCCccchhHHHHHHhcCCCCccccc
Q 026797 129 DAECVICLSDFAL--------GERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRH 175 (233)
Q Consensus 129 ~~~C~ICl~~~~~--------~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 175 (233)
...|+||-..-.. .+..| |.+|.-|-..|-..+..||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~R------yL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLR------YLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCce------EEEcCCCCCcccccCccCCCCCC
Confidence 3589999776321 12333 34445566678777888999965
No 241
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=24.30 E-value=43 Score=32.78 Aligned_cols=34 Identities=29% Similarity=0.593 Sum_probs=23.3
Q ss_pred CCCcccccccccccC-----------ceeeecCCCCCccchhHHHHH
Q 026797 128 LDAECVICLSDFALG-----------ERVRLLPKCNHGFHVRCIDRW 163 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~-----------~~~~~lp~C~H~FH~~Ci~~W 163 (233)
....|+||-|.|+.- +.+.+ . =|-+||..|+..-
T Consensus 512 ~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~l-e-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 512 RQASCPICQEKFEVVFDQEEDLWMYKDAVYL-E-FGRIFHSKCLSEK 556 (579)
T ss_pred cccCCcccccccceeecchhhheeecceeee-c-cCceeeccccchH
Confidence 346899999998631 12222 1 4789999998774
No 242
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=24.21 E-value=1.2e+02 Score=29.46 Aligned_cols=22 Identities=18% Similarity=0.508 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026797 59 VLSVLVCTVICTIVLNFVIKCA 80 (233)
Q Consensus 59 il~ill~~~i~~l~l~~i~rc~ 80 (233)
|+++|++++++++++++++|..
T Consensus 473 Il~~l~i~~~~~~~~i~~~~~~ 494 (507)
T PF07245_consen 473 ILGFLIIGILIFVLLIFICRSG 494 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 243
>PTZ00046 rifin; Provisional
Probab=23.64 E-value=1.3e+02 Score=27.79 Aligned_cols=14 Identities=0% Similarity=0.311 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhc
Q 026797 71 IVLNFVIKCALSSL 84 (233)
Q Consensus 71 l~l~~i~rc~~r~~ 84 (233)
+++.++.|+.++.+
T Consensus 332 vIIYLILRYRRKKK 345 (358)
T PTZ00046 332 VIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHhhhcch
Confidence 33445555555444
No 244
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=23.61 E-value=1.3e+02 Score=27.74 Aligned_cols=14 Identities=0% Similarity=0.311 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhhc
Q 026797 71 IVLNFVIKCALSSL 84 (233)
Q Consensus 71 l~l~~i~rc~~r~~ 84 (233)
+++.++.|+.++++
T Consensus 327 vIIYLILRYRRKKK 340 (353)
T TIGR01477 327 VIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHhhhcch
Confidence 34445555555444
No 245
>PRK14762 membrane protein; Provisional
Probab=23.51 E-value=1.5e+02 Score=16.58 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 026797 56 VLIVLSVLVCTVICTIV 72 (233)
Q Consensus 56 viiil~ill~~~i~~l~ 72 (233)
.|++.+++++.++.+.+
T Consensus 5 lw~i~iifligllvvtg 21 (27)
T PRK14762 5 LWAVLIIFLIGLLVVTG 21 (27)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555444444443
No 246
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=23.48 E-value=1.2e+02 Score=26.18 Aligned_cols=24 Identities=4% Similarity=0.325 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026797 57 LIVLSVLVCTVICTIVLNFVIKCA 80 (233)
Q Consensus 57 iiil~ill~~~i~~l~l~~i~rc~ 80 (233)
|+.+++++++++.++.++++++++
T Consensus 217 wf~~~miI~v~~sFVsMiliiqif 240 (244)
T KOG2678|consen 217 WFYITMIIFVILSFVSMILIIQIF 240 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444445555555544
No 247
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=23.44 E-value=2.6e+02 Score=21.80 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.5
Q ss_pred HHHhhc
Q 026797 79 CALSSL 84 (233)
Q Consensus 79 c~~r~~ 84 (233)
|..||.
T Consensus 37 WLlkR~ 42 (124)
T PRK11486 37 WLVKRL 42 (124)
T ss_pred HHHHHc
Confidence 444443
No 248
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=23.40 E-value=55 Score=34.51 Aligned_cols=50 Identities=24% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCccccccccccc---CceeeecCCCCCccchhHHHHH-HhcCCCCcccccccc
Q 026797 129 DAECVICLSDFAL---GERVRLLPKCNHGFHVRCIDRW-LRSNSSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~~---~~~~~~lp~C~H~FH~~Ci~~W-l~~~~~CP~CR~~l~ 178 (233)
...|.||-+++.. |+.-.-...|+-=.|..|.+-= -..++.||-|++..-
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3589999999643 3322222224444888997321 235678999988654
No 249
>PF15179 Myc_target_1: Myc target protein 1
Probab=23.16 E-value=1.6e+02 Score=24.76 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 026797 60 LSVLVCTVICTIVLNFVIKCALSS 83 (233)
Q Consensus 60 l~ill~~~i~~l~l~~i~rc~~r~ 83 (233)
++++++++|..++..+ ..|+.|+
T Consensus 27 vSm~iGLviG~li~~L-ltwlSRR 49 (197)
T PF15179_consen 27 VSMAIGLVIGALIWAL-LTWLSRR 49 (197)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhc
Confidence 3444443333333333 3344433
No 250
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.11 E-value=43 Score=24.81 Aligned_cols=13 Identities=38% Similarity=1.147 Sum_probs=11.3
Q ss_pred ccchhHHHHHHhc
Q 026797 154 GFHVRCIDRWLRS 166 (233)
Q Consensus 154 ~FH~~Ci~~Wl~~ 166 (233)
.||..|+..|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 7999999999853
No 251
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=22.69 E-value=54 Score=28.42 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=18.4
Q ss_pred CcccccccccccCceeeecCCCCCccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFH 156 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH 156 (233)
..|++|...+...+..-..+ .+|.|-
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~fd 28 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQFD 28 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCCc
Confidence 36999999997655544444 678883
No 252
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=22.59 E-value=39 Score=19.17 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=6.2
Q ss_pred CCcccccccccc
Q 026797 169 SCPKCRHCLIET 180 (233)
Q Consensus 169 ~CP~CR~~l~~~ 180 (233)
.||+|-..+...
T Consensus 1 ~CP~C~s~l~~~ 12 (28)
T PF03119_consen 1 TCPVCGSKLVRE 12 (28)
T ss_dssp B-TTT--BEEE-
T ss_pred CcCCCCCEeEcC
Confidence 499998888744
No 253
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=22.45 E-value=75 Score=28.19 Aligned_cols=21 Identities=29% Similarity=0.814 Sum_probs=16.2
Q ss_pred ccchhHHHHH-HhcCCCCcccc
Q 026797 154 GFHVRCIDRW-LRSNSSCPKCR 174 (233)
Q Consensus 154 ~FH~~Ci~~W-l~~~~~CP~CR 174 (233)
.=|++|+.+| |..++.||.=+
T Consensus 56 RGHrdCFEK~HlIanQ~~prsk 77 (285)
T PF06937_consen 56 RGHRDCFEKYHLIANQDCPRSK 77 (285)
T ss_pred cchHHHHHHHHHHHcCCCCccc
Confidence 3478999999 67788899443
No 254
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=22.38 E-value=38 Score=25.05 Aligned_cols=28 Identities=36% Similarity=0.708 Sum_probs=17.6
Q ss_pred CCCCccchhHHHHHHhcCCCCccccccccccc
Q 026797 150 KCNHGFHVRCIDRWLRSNSSCPKCRHCLIETC 181 (233)
Q Consensus 150 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 181 (233)
+||-.|-.+= ++..+.||.|+...++.+
T Consensus 63 kCGfef~~~~----ik~pSRCP~CKSE~Ie~p 90 (97)
T COG3357 63 KCGFEFRDDK----IKKPSRCPKCKSEWIEEP 90 (97)
T ss_pred ccCccccccc----cCCcccCCcchhhcccCC
Confidence 3776666521 234567999988766653
No 255
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=22.22 E-value=75 Score=27.43 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026797 57 LIVLSVLVCTVICTIVLN 74 (233)
Q Consensus 57 iiil~ill~~~i~~l~l~ 74 (233)
|+++++++++||+.++++
T Consensus 231 ~~~i~~v~~~Fi~mvl~i 248 (251)
T PF09753_consen 231 WLMIFVVIIVFIMMVLFI 248 (251)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444444555555555443
No 256
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=22.11 E-value=42 Score=26.54 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=16.9
Q ss_pred CCCCCccchhHHHHHHhcCCCCccccccc
Q 026797 149 PKCNHGFHVRCIDRWLRSNSSCPKCRHCL 177 (233)
Q Consensus 149 p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 177 (233)
++|||+|+. -+..||.|....
T Consensus 33 ~~CG~v~~P--------Pr~~Cp~C~~~~ 53 (140)
T COG1545 33 KKCGRVYFP--------PRAYCPKCGSET 53 (140)
T ss_pred CCCCeEEcC--------CcccCCCCCCCC
Confidence 469999996 566799998874
No 257
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=22.07 E-value=49 Score=33.18 Aligned_cols=52 Identities=23% Similarity=0.498 Sum_probs=33.5
Q ss_pred CCCcccccccccccCce-------eeecCCCCCccchhHHHHH-Hh---------cCCCCcccccccccc
Q 026797 128 LDAECVICLSDFALGER-------VRLLPKCNHGFHVRCIDRW-LR---------SNSSCPKCRHCLIET 180 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~-------~~~lp~C~H~FH~~Ci~~W-l~---------~~~~CP~CR~~l~~~ 180 (233)
....|-||-|+=.+.+. +-.- .|...||..|-..- |. .-+.|-.|++.+-..
T Consensus 116 fnKtCYIC~E~GrpnkA~~GACMtCNKs-~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKl 184 (900)
T KOG0956|consen 116 FNKTCYICNEEGRPNKAAKGACMTCNKS-GCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKL 184 (900)
T ss_pred hcceeeeecccCCccccccccceecccc-cchhhhhhhHhhhhccceeccccccccceechhHHHHHHHh
Confidence 34789999888443321 1112 47889999998765 21 234699998876543
No 258
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.99 E-value=50 Score=32.95 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=28.1
Q ss_pred Ccccccccccc-cCceeeecCCCCCccchhHHHHHHhcCCCCccc
Q 026797 130 AECVICLSDFA-LGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKC 173 (233)
Q Consensus 130 ~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 173 (233)
..|-+|...-. +.+..+.+. |+-.||..| |+--.+.||+|
T Consensus 655 r~C~vcq~pedse~~v~rt~~-C~~~~C~~c---~~~~~~~~~vC 695 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTF-CYTPYCVAC---SLDYASISEVC 695 (717)
T ss_pred HHHHHhcCCcCccccccCccc-cCCcchHhh---hhhhhccCccc
Confidence 57888866533 234455555 888888877 66568889999
No 259
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.95 E-value=19 Score=22.32 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=13.3
Q ss_pred CCCCccchhHHHHHHhcCCCCccccc
Q 026797 150 KCNHGFHVRCIDRWLRSNSSCPKCRH 175 (233)
Q Consensus 150 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 175 (233)
.|||.|...--..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 37777765210000 12346999977
No 260
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.88 E-value=69 Score=29.17 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=31.5
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCC---CCccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS---SCPKC 173 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~C 173 (233)
..|++--+.-.+......+. |||+.-..-++.--+... .||-|
T Consensus 337 FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 337 FICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 56998777766666666776 999999988887543222 49999
No 261
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=21.72 E-value=1.1e+02 Score=26.14 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=18.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026797 52 LDKNVLIVLSVLVCTVICTIVLNFVIKCA 80 (233)
Q Consensus 52 ~~~~viiil~ill~~~i~~l~l~~i~rc~ 80 (233)
+...-|.++.++++++++++++..+.|-.
T Consensus 175 ~~~~~W~i~~~~~i~~i~~i~i~~irR~i 203 (215)
T PHA02947 175 YSNKPWFIVGVVIILIIFVIAICSIKRKI 203 (215)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33346777777777777777766655543
No 262
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=21.70 E-value=21 Score=23.22 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=8.7
Q ss_pred Cccccccccccc
Q 026797 130 AECVICLSDFAL 141 (233)
Q Consensus 130 ~~C~ICl~~~~~ 141 (233)
..|+.|-++|..
T Consensus 3 f~CP~C~~~~~~ 14 (54)
T PF05605_consen 3 FTCPYCGKGFSE 14 (54)
T ss_pred cCCCCCCCccCH
Confidence 579999886553
No 263
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=21.53 E-value=32 Score=24.17 Aligned_cols=42 Identities=19% Similarity=0.446 Sum_probs=20.2
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..|+.|-.++.... +|.++..|-.. +.....||-|..+|...
T Consensus 2 ~~CP~C~~~L~~~~--------~~~~C~~C~~~-~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQG--------GHYHCEACQKD-YKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEET--------TEEEETTT--E-EEEEEE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEeC--------CEEECcccccc-ceecccCCCcccHHHHH
Confidence 46999988865422 44444555443 33455799998877433
No 264
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=21.44 E-value=1.5e+02 Score=24.73 Aligned_cols=19 Identities=5% Similarity=0.224 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026797 62 VLVCTVICTIVLNFVIKCA 80 (233)
Q Consensus 62 ill~~~i~~l~l~~i~rc~ 80 (233)
+.++++++++++++..|-.
T Consensus 17 ~a~g~l~~vllfIfaKRQI 35 (186)
T PF07406_consen 17 IAYGSLVFVLLFIFAKRQI 35 (186)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 265
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=21.19 E-value=1.7e+02 Score=25.37 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026797 60 LSVLVCTVICTIVLNFVIKCALSSLR 85 (233)
Q Consensus 60 l~ill~~~i~~l~l~~i~rc~~r~~~ 85 (233)
+-++++++++.+.++.++..++-+..
T Consensus 191 lpvvIaliVitl~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 191 LPVVIALIVITLSVFTLVGLYRMCWK 216 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444444444445555554433
No 266
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=21.19 E-value=2.4e+02 Score=27.33 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=8.7
Q ss_pred hhHHHHHHhcCC
Q 026797 157 VRCIDRWLRSNS 168 (233)
Q Consensus 157 ~~Ci~~Wl~~~~ 168 (233)
+.|+..||+.+-
T Consensus 292 kGsL~dyL~~nt 303 (534)
T KOG3653|consen 292 KGSLCDYLKANT 303 (534)
T ss_pred CCcHHHHHHhcc
Confidence 568888887654
No 267
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=21.09 E-value=73 Score=28.80 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=27.5
Q ss_pred CCCccccccccccc-------CceeeecCCCCCccchhHHHHHHhcCCCCccccc
Q 026797 128 LDAECVICLSDFAL-------GERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRH 175 (233)
Q Consensus 128 ~~~~C~ICl~~~~~-------~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 175 (233)
....|+||-..-.. .+..| |.+|.-|-..|-..+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~R------yL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLR------YLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCce------EEEcCCCCCcccccCccCCCCCC
Confidence 35789999776321 12233 44455666778777888999965
No 268
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=21.03 E-value=71 Score=29.49 Aligned_cols=47 Identities=28% Similarity=0.622 Sum_probs=25.9
Q ss_pred CCCcccccccccccCceeeecC--CCCCccch--------hHHHHHH-----hcCCCCccccc
Q 026797 128 LDAECVICLSDFALGERVRLLP--KCNHGFHV--------RCIDRWL-----RSNSSCPKCRH 175 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~--------~Ci~~Wl-----~~~~~CP~CR~ 175 (233)
.+.-|++|-+... |-+-.++. .|.-.|.. .|+..-- ..++.||.||.
T Consensus 14 l~ElCPVCGDkVS-GYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 14 LGELCPVCGDKVS-GYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred cccccccccCccc-cceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 4568999988754 34444554 23333332 2433220 13457999987
No 269
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=33 Score=30.87 Aligned_cols=49 Identities=24% Similarity=0.571 Sum_probs=37.9
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
+..+.|-||...+...... .+|.|.|...|-..|....+.||.|+....
T Consensus 103 ~~~~~~~~~~g~l~vpt~~---qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRI---QGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccc---cCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 3457899998887654322 249999999999999999999999987543
No 270
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=20.94 E-value=1.3e+02 Score=18.70 Aligned_cols=22 Identities=9% Similarity=0.418 Sum_probs=14.2
Q ss_pred CCCchhhHHHHHHHHHHHHHHH
Q 026797 50 SNLDKNVLIVLSVLVCTVICTI 71 (233)
Q Consensus 50 ~~~~~~viiil~ill~~~i~~l 71 (233)
-..++..++++++.+.++++++
T Consensus 16 iki~P~~Vl~~si~fi~~V~~L 37 (41)
T PF03911_consen 16 IKIDPKTVLIISIAFIAIVILL 37 (41)
T ss_dssp S-BSCCHHHHHHHHHHHHHHHH
T ss_pred ceeCCeehHHHHHHHHHHHHHH
Confidence 4567777777777776665543
No 271
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=20.68 E-value=61 Score=18.43 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=17.0
Q ss_pred cccccccccccCceeeecCCCCCccchhH
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRC 159 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~C 159 (233)
.|.+|..+......-.-. .|+..+|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~-~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCS-ECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeC-CCCCeEcCcc
Confidence 488887776543222222 3777788776
No 272
>PHA03283 envelope glycoprotein E; Provisional
Probab=20.64 E-value=1.7e+02 Score=28.40 Aligned_cols=11 Identities=27% Similarity=0.619 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 026797 58 IVLSVLVCTVI 68 (233)
Q Consensus 58 iil~ill~~~i 68 (233)
.++++++++.+
T Consensus 401 ~~~~~~~~~~~ 411 (542)
T PHA03283 401 AFLLAIICTCA 411 (542)
T ss_pred hhHHHHHHHHH
Confidence 34444444433
No 273
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.60 E-value=18 Score=31.86 Aligned_cols=49 Identities=24% Similarity=0.465 Sum_probs=36.4
Q ss_pred CCcccccccccccCc---eeeecCC-------CCCccchhHHHHHHhcC-CCCccccccc
Q 026797 129 DAECVICLSDFALGE---RVRLLPK-------CNHGFHVRCIDRWLRSN-SSCPKCRHCL 177 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~---~~~~lp~-------C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l 177 (233)
+..|.||...|...+ .-+++.. |+|-.+..|++.-+... ..||.|+...
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 367999999998432 2233333 99999999999987544 4799998764
No 274
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=20.55 E-value=1.3e+02 Score=23.56 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=4.3
Q ss_pred CCHHHHhhCCc
Q 026797 106 INKKALKAFPV 116 (233)
Q Consensus 106 ~~~~~~~~lp~ 116 (233)
+++.++...|.
T Consensus 77 LKr~a~~~~pr 87 (146)
T PF14316_consen 77 LKRVALQYYPR 87 (146)
T ss_pred HHHHHHHhCCc
Confidence 33334444433
No 275
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=20.10 E-value=56 Score=31.20 Aligned_cols=48 Identities=21% Similarity=0.600 Sum_probs=31.2
Q ss_pred CCcccccccc-cccCceeeecCCCCCccchhHHHHHHh----cCC----CCcccccc
Q 026797 129 DAECVICLSD-FALGERVRLLPKCNHGFHVRCIDRWLR----SNS----SCPKCRHC 176 (233)
Q Consensus 129 ~~~C~ICl~~-~~~~~~~~~lp~C~H~FH~~Ci~~Wl~----~~~----~CP~CR~~ 176 (233)
+..|.+|..- .-....+....+|+--||..|...... ... .|=+|...
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 4569999843 333344545557899999999766532 111 49999664
No 276
>PF15353 HECA: Headcase protein family homologue
Probab=20.07 E-value=66 Score=24.46 Aligned_cols=13 Identities=23% Similarity=0.894 Sum_probs=11.9
Q ss_pred CCCccchhHHHHH
Q 026797 151 CNHGFHVRCIDRW 163 (233)
Q Consensus 151 C~H~FH~~Ci~~W 163 (233)
.++..|.+|++.|
T Consensus 40 ~~~~MH~~CF~~w 52 (107)
T PF15353_consen 40 FGQYMHRECFEKW 52 (107)
T ss_pred CCCchHHHHHHHH
Confidence 4789999999999
Done!