Query 026797
Match_columns 233
No_of_seqs 281 out of 1989
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 22:25:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 2E-18 6.9E-23 126.7 5.5 80 99-179 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 2.1E-16 7.2E-21 111.5 4.1 68 111-180 6-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 1E-15 3.5E-20 101.3 3.9 51 128-178 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.6 2.6E-15 8.9E-20 105.3 5.5 53 127-180 13-65 (74)
5 2kiz_A E3 ubiquitin-protein li 99.5 4.8E-15 1.6E-19 102.6 5.4 53 127-180 12-64 (69)
6 2ect_A Ring finger protein 126 99.5 6.8E-15 2.3E-19 104.2 5.1 53 127-180 13-65 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 8E-15 2.7E-19 105.2 4.4 53 128-180 14-77 (81)
8 2ecm_A Ring finger and CHY zin 99.5 3.7E-14 1.3E-18 93.6 4.5 49 128-177 4-53 (55)
9 2d8s_A Cellular modulator of i 99.4 1E-13 3.6E-18 99.4 5.2 56 123-180 9-71 (80)
10 1v87_A Deltex protein 2; ring- 99.4 7.9E-14 2.7E-18 105.6 4.5 51 129-180 25-95 (114)
11 2ea6_A Ring finger protein 4; 99.4 1.6E-13 5.6E-18 94.3 4.8 51 127-178 13-67 (69)
12 3ng2_A RNF4, snurf, ring finge 99.4 1.2E-13 4E-18 95.8 3.7 53 127-180 8-64 (71)
13 3dpl_R Ring-box protein 1; ubi 99.4 1.5E-13 5.2E-18 103.7 4.4 50 128-178 36-100 (106)
14 2xeu_A Ring finger protein 4; 99.4 1.4E-13 4.8E-18 93.3 3.3 52 128-180 2-57 (64)
15 1chc_A Equine herpes virus-1 r 99.3 6.7E-13 2.3E-17 91.3 4.5 50 128-180 4-53 (68)
16 2d8t_A Dactylidin, ring finger 99.3 6.2E-13 2.1E-17 92.5 3.5 50 127-180 13-62 (71)
17 2ecn_A Ring finger protein 141 99.3 4E-13 1.4E-17 93.0 2.4 49 127-180 13-61 (70)
18 2djb_A Polycomb group ring fin 99.3 2.4E-12 8.2E-17 89.8 5.3 51 127-180 13-63 (72)
19 4a0k_B E3 ubiquitin-protein li 99.3 3.1E-13 1.1E-17 103.6 0.2 49 128-177 47-110 (117)
20 2ct2_A Tripartite motif protei 99.3 2.9E-12 1E-16 92.2 5.2 52 127-179 13-68 (88)
21 2ct0_A Non-SMC element 1 homol 99.3 4E-12 1.4E-16 89.7 5.2 51 127-180 13-65 (74)
22 2csy_A Zinc finger protein 183 99.3 5E-12 1.7E-16 90.0 5.2 48 127-178 13-60 (81)
23 2yur_A Retinoblastoma-binding 99.2 7.4E-12 2.5E-16 87.9 5.0 51 127-180 13-65 (74)
24 4ayc_A E3 ubiquitin-protein li 99.2 4.2E-12 1.4E-16 99.6 3.3 48 129-180 53-100 (138)
25 2ysl_A Tripartite motif-contai 99.2 1.1E-11 3.9E-16 86.1 5.1 50 127-180 18-70 (73)
26 2ecy_A TNF receptor-associated 99.2 1.2E-11 4.2E-16 84.6 4.6 50 127-180 13-63 (66)
27 4ap4_A E3 ubiquitin ligase RNF 99.2 1.1E-11 3.9E-16 95.2 3.5 52 128-180 6-61 (133)
28 3lrq_A E3 ubiquitin-protein li 99.1 2.6E-11 8.9E-16 90.0 4.1 48 129-179 22-70 (100)
29 2ecw_A Tripartite motif-contai 99.1 4.9E-11 1.7E-15 84.8 5.2 49 127-179 17-71 (85)
30 2ysj_A Tripartite motif-contai 99.1 5.4E-11 1.8E-15 80.5 5.0 43 127-173 18-63 (63)
31 1t1h_A Gspef-atpub14, armadill 99.1 4.4E-11 1.5E-15 84.3 4.6 47 128-178 7-54 (78)
32 2ecv_A Tripartite motif-contai 99.1 5.1E-11 1.7E-15 84.7 4.9 49 127-179 17-71 (85)
33 1g25_A CDK-activating kinase a 99.1 4.4E-11 1.5E-15 81.5 4.1 51 129-180 3-56 (65)
34 4ap4_A E3 ubiquitin ligase RNF 99.1 3.5E-11 1.2E-15 92.5 3.9 53 127-180 70-126 (133)
35 2ecj_A Tripartite motif-contai 99.1 5.5E-11 1.9E-15 78.8 4.3 43 127-173 13-58 (58)
36 2egp_A Tripartite motif-contai 99.1 1.6E-11 5.6E-16 86.5 1.6 49 127-179 10-65 (79)
37 2y43_A E3 ubiquitin-protein li 99.1 4.6E-11 1.6E-15 88.2 4.1 48 129-179 22-69 (99)
38 2ckl_A Polycomb group ring fin 99.1 6E-11 2.1E-15 89.0 4.0 48 129-179 15-62 (108)
39 3fl2_A E3 ubiquitin-protein li 99.0 1.1E-10 3.6E-15 89.7 4.1 47 129-179 52-99 (124)
40 2ckl_B Ubiquitin ligase protei 99.0 1.4E-10 4.7E-15 93.4 4.3 48 129-179 54-102 (165)
41 3ztg_A E3 ubiquitin-protein li 99.0 2.2E-10 7.5E-15 83.2 4.5 49 127-178 11-61 (92)
42 1jm7_A BRCA1, breast cancer ty 99.0 1.9E-10 6.7E-15 86.2 3.9 46 130-179 22-70 (112)
43 1e4u_A Transcriptional repress 98.9 8.6E-10 2.9E-14 78.4 5.4 53 127-180 9-63 (78)
44 1z6u_A NP95-like ring finger p 98.9 4.2E-10 1.5E-14 89.6 4.3 48 129-180 78-126 (150)
45 2vje_A E3 ubiquitin-protein li 98.9 2.9E-10 9.9E-15 77.7 2.6 48 128-179 7-57 (64)
46 3hct_A TNF receptor-associated 98.9 4.8E-10 1.6E-14 85.4 3.9 50 127-180 16-66 (118)
47 1rmd_A RAG1; V(D)J recombinati 98.9 5.3E-10 1.8E-14 84.7 3.7 48 129-180 23-71 (116)
48 3l11_A E3 ubiquitin-protein li 98.9 2.2E-10 7.4E-15 86.8 0.9 47 129-179 15-62 (115)
49 2y1n_A E3 ubiquitin-protein li 98.9 1.1E-09 3.7E-14 99.5 4.9 48 129-180 332-380 (389)
50 2vje_B MDM4 protein; proto-onc 98.9 7.1E-10 2.4E-14 75.5 2.4 50 128-179 6-56 (63)
51 1bor_A Transcription factor PM 98.9 7.8E-10 2.7E-14 73.4 2.2 47 127-180 4-50 (56)
52 2kr4_A Ubiquitin conjugation f 98.8 2.8E-09 9.6E-14 76.8 4.2 48 128-179 13-60 (85)
53 3knv_A TNF receptor-associated 98.8 1.8E-09 6.1E-14 85.1 2.7 48 127-178 29-77 (141)
54 4ic3_A E3 ubiquitin-protein li 98.8 2E-09 6.7E-14 75.5 1.9 44 129-180 24-68 (74)
55 2kre_A Ubiquitin conjugation f 98.8 3.9E-09 1.3E-13 78.5 3.5 48 128-179 28-75 (100)
56 3k1l_B Fancl; UBC, ring, RWD, 98.7 2.5E-09 8.7E-14 95.1 2.7 52 127-178 306-372 (381)
57 1jm7_B BARD1, BRCA1-associated 98.7 1.9E-09 6.5E-14 81.9 1.4 44 129-178 22-66 (117)
58 1wgm_A Ubiquitin conjugation f 98.7 6.1E-09 2.1E-13 77.1 4.1 48 128-179 21-69 (98)
59 2ea5_A Cell growth regulator w 98.6 2.8E-08 9.4E-13 68.6 4.9 46 127-180 13-59 (68)
60 1vyx_A ORF K3, K3RING; zinc-bi 98.6 2.1E-08 7.3E-13 67.6 3.9 47 127-177 4-57 (60)
61 3hcs_A TNF receptor-associated 98.6 2.1E-08 7.2E-13 80.8 3.4 50 127-180 16-66 (170)
62 1wim_A KIAA0161 protein; ring 98.6 2.7E-08 9.3E-13 72.6 3.3 48 128-176 4-61 (94)
63 2ecg_A Baculoviral IAP repeat- 98.6 2.8E-08 9.5E-13 69.6 2.8 42 130-179 26-68 (75)
64 2c2l_A CHIP, carboxy terminus 98.5 4.7E-08 1.6E-12 83.8 4.7 48 128-179 207-255 (281)
65 2yu4_A E3 SUMO-protein ligase 98.5 3.9E-08 1.3E-12 72.0 3.4 46 128-176 6-59 (94)
66 2yho_A E3 ubiquitin-protein li 98.5 3.9E-08 1.3E-12 69.8 1.6 44 129-180 18-62 (79)
67 2f42_A STIP1 homology and U-bo 98.4 2.2E-07 7.4E-12 76.0 3.7 48 128-179 105-153 (179)
68 3t6p_A Baculoviral IAP repeat- 98.3 1.9E-07 6.4E-12 83.8 1.4 43 129-179 295-338 (345)
69 2bay_A PRE-mRNA splicing facto 98.2 7.2E-07 2.5E-11 60.2 2.9 47 130-180 4-51 (61)
70 3htk_C E3 SUMO-protein ligase 98.1 9E-07 3.1E-11 76.2 3.1 47 129-178 181-231 (267)
71 3vk6_A E3 ubiquitin-protein li 98.1 2.5E-06 8.6E-11 62.8 4.1 48 131-181 3-51 (101)
72 3nw0_A Non-structural maintena 97.9 9E-06 3.1E-10 69.2 4.3 48 128-178 179-228 (238)
73 2ko5_A Ring finger protein Z; 95.8 0.0087 3E-07 43.3 3.9 47 129-180 28-74 (99)
74 2lri_C Autoimmune regulator; Z 95.5 0.0094 3.2E-07 40.4 3.1 47 126-176 9-59 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 93.6 0.042 1.4E-06 39.6 2.8 34 129-163 3-36 (101)
76 1wil_A KIAA1045 protein; ring 92.5 0.15 5E-06 36.2 4.1 35 127-163 13-47 (89)
77 1we9_A PHD finger family prote 90.2 0.061 2.1E-06 35.7 0.3 49 127-175 4-57 (64)
78 2l5u_A Chromodomain-helicase-D 90.1 0.18 6.1E-06 33.3 2.5 45 127-175 9-57 (61)
79 3lqh_A Histone-lysine N-methyl 89.2 0.14 4.8E-06 41.5 1.7 48 130-177 3-64 (183)
80 3u5n_A E3 ubiquitin-protein li 88.9 0.099 3.4E-06 42.9 0.7 46 127-176 5-54 (207)
81 3o36_A Transcription intermedi 88.1 0.11 3.9E-06 41.7 0.5 46 128-177 3-52 (184)
82 1mm2_A MI2-beta; PHD, zinc fin 87.5 0.13 4.5E-06 33.9 0.5 46 127-176 7-56 (61)
83 2k16_A Transcription initiatio 86.1 0.18 6.3E-06 34.4 0.5 50 127-177 16-69 (75)
84 1f62_A Transcription factor WS 85.6 0.36 1.2E-05 30.3 1.8 44 131-175 2-49 (51)
85 2puy_A PHD finger protein 21A; 84.4 0.1 3.5E-06 34.3 -1.4 47 128-178 4-54 (60)
86 1xwh_A Autoimmune regulator; P 83.7 0.17 5.8E-06 33.9 -0.5 45 127-175 6-54 (66)
87 2yql_A PHD finger protein 21A; 82.8 0.16 5.4E-06 32.9 -0.9 45 127-175 7-55 (56)
88 1wep_A PHF8; structural genomi 82.2 1.1 3.9E-05 30.8 3.3 48 129-177 12-64 (79)
89 2ysm_A Myeloid/lymphoid or mix 82.1 0.4 1.4E-05 35.2 1.0 47 127-174 5-55 (111)
90 2vpb_A Hpygo1, pygopus homolog 82.1 0.98 3.3E-05 30.2 2.8 34 128-161 7-41 (65)
91 3v43_A Histone acetyltransfera 80.1 0.42 1.4E-05 35.3 0.4 45 131-175 63-111 (112)
92 2kgg_A Histone demethylase jar 79.8 0.6 2.1E-05 29.6 1.1 44 131-174 4-52 (52)
93 2yt5_A Metal-response element- 79.2 0.97 3.3E-05 29.8 2.0 50 127-176 4-61 (66)
94 2ro1_A Transcription intermedi 79.0 0.46 1.6E-05 38.4 0.4 44 129-176 2-49 (189)
95 2ri7_A Nucleosome-remodeling f 77.1 0.52 1.8E-05 37.3 0.2 48 128-176 7-59 (174)
96 1fp0_A KAP-1 corepressor; PHD 76.4 0.9 3.1E-05 32.3 1.2 46 127-176 23-72 (88)
97 2lv9_A Histone-lysine N-methyl 76.2 1.1 3.6E-05 32.4 1.6 45 130-176 29-76 (98)
98 2e6r_A Jumonji/ARID domain-con 76.0 0.4 1.4E-05 34.3 -0.7 48 128-176 15-66 (92)
99 2l43_A N-teminal domain from h 75.8 2.8 9.7E-05 29.5 3.8 50 127-176 23-75 (88)
100 2lbm_A Transcriptional regulat 75.7 3.1 0.00011 32.1 4.3 46 127-176 61-117 (142)
101 1wem_A Death associated transc 73.7 1.6 5.3E-05 29.8 1.9 46 129-176 16-70 (76)
102 2ku3_A Bromodomain-containing 71.9 4.2 0.00014 27.5 3.7 49 127-175 14-65 (71)
103 3v43_A Histone acetyltransfera 70.9 5.5 0.00019 29.1 4.5 34 129-162 5-43 (112)
104 1wev_A Riken cDNA 1110020M19; 70.9 0.51 1.8E-05 33.4 -1.2 49 129-177 16-73 (88)
105 2xb1_A Pygopus homolog 2, B-ce 70.8 2.3 7.8E-05 31.0 2.3 48 129-176 3-61 (105)
106 3ql9_A Transcriptional regulat 70.5 5.4 0.00019 30.3 4.4 47 126-176 54-111 (129)
107 2l8s_A Integrin alpha-1; trans 70.2 13 0.00043 23.9 5.4 29 54-82 8-36 (54)
108 2knc_A Integrin alpha-IIB; tra 69.7 19 0.00065 23.0 6.3 28 55-82 12-39 (54)
109 4gne_A Histone-lysine N-methyl 68.4 3.4 0.00012 30.3 2.8 44 127-176 13-62 (107)
110 1wen_A Inhibitor of growth fam 66.3 4.5 0.00015 27.3 2.9 45 127-176 14-65 (71)
111 3shb_A E3 ubiquitin-protein li 66.2 1 3.6E-05 31.1 -0.4 44 131-175 28-76 (77)
112 1wee_A PHD finger family prote 65.6 0.91 3.1E-05 30.7 -0.8 47 129-176 16-66 (72)
113 3asl_A E3 ubiquitin-protein li 65.1 1.5 5E-05 29.6 0.3 44 131-175 20-68 (70)
114 2klu_A T-cell surface glycopro 64.9 16 0.00054 24.5 5.2 19 62-80 13-31 (70)
115 1weu_A Inhibitor of growth fam 62.9 4.7 0.00016 28.7 2.6 44 128-176 35-85 (91)
116 3o70_A PHD finger protein 13; 62.7 1.8 6.3E-05 29.0 0.4 46 128-175 18-66 (68)
117 2knc_B Integrin beta-3; transm 62.0 9.6 0.00033 26.3 4.0 25 57-81 12-36 (79)
118 2kwj_A Zinc finger protein DPF 61.7 5 0.00017 29.4 2.7 34 130-163 2-41 (114)
119 1y02_A CARP2, FYVE-ring finger 60.8 1.2 4.1E-05 33.5 -1.0 47 129-175 19-65 (120)
120 2e6s_A E3 ubiquitin-protein li 59.9 2.3 7.7E-05 29.3 0.4 46 129-175 26-76 (77)
121 1wew_A DNA-binding family prot 59.5 3.1 0.00011 28.5 1.1 47 128-176 15-72 (78)
122 1zfo_A LAsp-1; LIM domain, zin 58.7 3.5 0.00012 23.1 1.0 28 130-160 4-31 (31)
123 1zza_A Stannin, AG8_1; helix, 57.2 12 0.0004 25.6 3.6 23 66-88 23-45 (90)
124 1z60_A TFIIH basal transcripti 57.1 5.7 0.0002 26.0 2.0 43 130-173 16-58 (59)
125 1vfy_A Phosphatidylinositol-3- 56.8 8.9 0.00031 25.7 3.1 33 129-161 11-43 (73)
126 3m62_A Ubiquitin conjugation f 56.1 9.3 0.00032 38.3 4.2 48 128-179 890-938 (968)
127 2cu8_A Cysteine-rich protein 2 55.4 10 0.00035 25.0 3.2 41 128-179 8-48 (76)
128 2l2t_A Receptor tyrosine-prote 55.4 15 0.00052 22.5 3.6 24 50-73 7-30 (44)
129 2cs3_A Protein C14ORF4, MY039 54.7 26 0.0009 24.4 5.1 40 127-166 13-52 (93)
130 1joc_A EEA1, early endosomal a 54.4 6.8 0.00023 29.3 2.3 33 130-162 70-102 (125)
131 1wfk_A Zinc finger, FYVE domai 53.9 8.3 0.00028 27.0 2.6 50 128-177 8-64 (88)
132 2co8_A NEDD9 interacting prote 53.6 14 0.00047 25.0 3.7 43 127-180 13-55 (82)
133 2k9j_B Integrin beta-3; transm 53.5 25 0.00085 21.3 4.4 28 56-83 10-37 (43)
134 3ask_A E3 ubiquitin-protein li 53.4 3.3 0.00011 34.5 0.4 45 130-175 175-224 (226)
135 2yw8_A RUN and FYVE domain-con 53.4 8.9 0.00031 26.3 2.7 35 129-163 19-53 (82)
136 2klu_A T-cell surface glycopro 53.2 10 0.00034 25.4 2.7 28 58-85 12-40 (70)
137 3t7l_A Zinc finger FYVE domain 52.9 7.9 0.00027 27.2 2.3 35 130-164 21-55 (90)
138 1z2q_A LM5-1; membrane protein 52.8 9.2 0.00032 26.4 2.7 35 129-163 21-55 (84)
139 2gmg_A Hypothetical protein PF 52.1 3.1 0.0001 30.5 0.0 26 150-180 72-97 (105)
140 1zbd_B Rabphilin-3A; G protein 51.7 7.9 0.00027 29.4 2.3 49 127-175 53-106 (134)
141 1dvp_A HRS, hepatocyte growth 51.4 6.7 0.00023 32.0 2.0 35 128-162 160-194 (220)
142 2k1a_A Integrin alpha-IIB; sin 51.4 29 0.00099 21.0 4.4 25 55-79 10-34 (42)
143 2ysm_A Myeloid/lymphoid or mix 51.3 2.3 7.9E-05 31.0 -0.8 45 131-176 56-104 (111)
144 1weo_A Cellulose synthase, cat 51.2 31 0.0011 24.4 5.1 51 128-178 15-69 (93)
145 2dj7_A Actin-binding LIM prote 51.1 14 0.00047 24.9 3.3 40 128-178 14-53 (80)
146 3c6w_A P28ING5, inhibitor of g 50.5 4.1 0.00014 26.4 0.5 42 129-175 9-57 (59)
147 3zyq_A Hepatocyte growth facto 50.1 7.6 0.00026 31.9 2.2 36 128-163 163-198 (226)
148 2jwa_A Receptor tyrosine-prote 49.6 25 0.00084 21.5 3.9 16 63-78 21-36 (44)
149 1g47_A Pinch protein; LIM doma 49.2 13 0.00044 24.4 2.9 42 128-179 10-51 (77)
150 2ks1_B Epidermal growth factor 48.9 21 0.0007 21.8 3.5 11 68-78 26-36 (44)
151 2vnf_A ING 4, P29ING4, inhibit 48.0 4.4 0.00015 26.3 0.3 42 129-175 10-58 (60)
152 1x4u_A Zinc finger, FYVE domai 46.0 12 0.00042 25.7 2.4 33 129-161 14-46 (84)
153 3f6q_B LIM and senescent cell 45.9 10 0.00035 24.4 1.9 42 129-180 11-52 (72)
154 3i2d_A E3 SUMO-protein ligase 44.1 18 0.00062 32.2 3.7 46 130-178 250-299 (371)
155 1x64_A Alpha-actinin-2 associa 44.0 23 0.00079 24.1 3.7 40 128-179 24-63 (89)
156 2kwj_A Zinc finger protein DPF 43.2 2.9 9.9E-05 30.8 -1.3 46 131-177 60-109 (114)
157 2d8v_A Zinc finger FYVE domain 43.1 17 0.00058 24.3 2.6 31 128-163 7-38 (67)
158 1wyh_A SLIM 2, skeletal muscle 42.9 17 0.00057 23.5 2.6 41 129-179 5-45 (72)
159 3kqi_A GRC5, PHD finger protei 42.5 5.2 0.00018 27.1 -0.0 46 130-176 11-61 (75)
160 4fo9_A E3 SUMO-protein ligase 42.2 23 0.00078 31.4 4.1 46 130-178 216-265 (360)
161 1iml_A CRIP, cysteine rich int 41.5 13 0.00046 24.4 2.0 37 131-178 2-38 (76)
162 1x4k_A Skeletal muscle LIM-pro 40.1 17 0.00057 23.5 2.3 40 130-179 6-45 (72)
163 3a1b_A DNA (cytosine-5)-methyl 40.0 26 0.00087 27.5 3.6 35 127-165 77-113 (159)
164 2o35_A Hypothetical protein DU 39.5 12 0.00041 27.1 1.5 12 154-165 42-53 (105)
165 2cor_A Pinch protein; LIM doma 39.5 28 0.00097 23.1 3.5 40 129-180 15-54 (79)
166 3fyb_A Protein of unknown func 39.2 12 0.00042 27.0 1.5 12 154-165 41-52 (104)
167 2jo1_A Phospholemman; FXYD1, N 38.9 87 0.003 21.0 5.8 25 52-76 11-35 (72)
168 1x61_A Thyroid receptor intera 38.8 24 0.00083 22.7 2.9 40 129-178 5-44 (72)
169 1a7i_A QCRP2 (LIM1); LIM domai 38.8 9.3 0.00032 25.6 0.8 40 129-179 7-46 (81)
170 1x63_A Skeletal muscle LIM-pro 38.6 22 0.00074 23.6 2.7 41 129-179 15-55 (82)
171 3mpx_A FYVE, rhogef and PH dom 38.5 6.6 0.00023 35.0 0.0 36 129-164 375-410 (434)
172 2d8y_A Eplin protein; LIM doma 38.1 22 0.00074 24.3 2.7 40 129-179 15-54 (91)
173 2g6q_A Inhibitor of growth pro 37.6 6.9 0.00024 25.6 -0.0 44 129-175 11-59 (62)
174 1x4l_A Skeletal muscle LIM-pro 36.6 28 0.00095 22.4 3.0 40 129-178 5-46 (72)
175 2jp3_A FXYD domain-containing 36.5 35 0.0012 22.8 3.3 25 52-76 12-36 (67)
176 2l3k_A Rhombotin-2, linker, LI 36.1 20 0.0007 26.1 2.4 28 131-160 10-37 (123)
177 2jo1_A Phospholemman; FXYD1, N 35.7 53 0.0018 22.1 4.1 32 55-86 18-49 (72)
178 3kv5_D JMJC domain-containing 35.6 8 0.00027 35.7 0.1 47 130-177 38-89 (488)
179 2l4z_A DNA endonuclease RBBP8, 34.7 20 0.00068 26.4 2.2 38 130-178 62-99 (123)
180 3o7a_A PHD finger protein 13 v 34.4 6.4 0.00022 24.6 -0.6 41 134-175 8-51 (52)
181 2pv0_B DNA (cytosine-5)-methyl 33.9 27 0.00093 31.2 3.3 46 127-176 91-148 (386)
182 2k9y_A Ephrin type-A receptor 32.5 21 0.00073 20.9 1.6 9 57-65 14-22 (41)
183 2d8x_A Protein pinch; LIM doma 32.4 32 0.0011 22.0 2.7 40 129-180 5-44 (70)
184 1nyp_A Pinch protein; LIM doma 32.2 20 0.00068 22.8 1.6 38 130-179 6-43 (66)
185 1x68_A FHL5 protein; four-and- 32.0 29 0.00099 22.7 2.5 38 130-178 6-46 (76)
186 2jp3_A FXYD domain-containing 31.9 83 0.0028 20.9 4.5 32 55-86 19-50 (67)
187 2zxe_G FXYD10, phospholemman-l 31.5 64 0.0022 21.9 4.0 28 50-77 12-39 (74)
188 2ku7_A MLL1 PHD3-CYP33 RRM chi 31.1 1.2E+02 0.004 21.6 6.0 27 150-176 7-44 (140)
189 2dar_A PDZ and LIM domain prot 30.3 27 0.00093 23.7 2.2 39 129-179 25-63 (90)
190 2pk7_A Uncharacterized protein 28.0 13 0.00045 24.9 0.1 20 161-180 2-21 (69)
191 1x6a_A LIMK-2, LIM domain kina 27.7 35 0.0012 22.5 2.3 37 130-178 16-52 (81)
192 3ihp_A Ubiquitin carboxyl-term 27.0 39 0.0013 33.3 3.3 62 147-213 173-234 (854)
193 3mjh_B Early endosome antigen 26.8 17 0.00057 21.0 0.4 15 129-143 5-19 (34)
194 1x62_A C-terminal LIM domain p 26.6 40 0.0014 22.2 2.5 38 129-178 15-52 (79)
195 2wwb_C SEC61BETA, protein tran 26.3 53 0.0018 23.5 3.0 22 50-71 66-87 (96)
196 2zet_C Melanophilin; complex, 26.2 31 0.0011 26.7 2.0 46 128-175 67-116 (153)
197 2jvx_A NF-kappa-B essential mo 25.9 17 0.00057 20.1 0.3 13 168-180 4-16 (28)
198 2rgt_A Fusion of LIM/homeobox 25.6 31 0.0011 26.5 2.0 39 130-178 66-104 (169)
199 1j2o_A FLIN2, fusion of rhombo 25.2 46 0.0016 23.7 2.7 10 131-140 5-14 (114)
200 1v6g_A Actin binding LIM prote 25.0 38 0.0013 22.4 2.1 38 130-179 16-53 (81)
201 2jny_A Uncharacterized BCR; st 25.0 12 0.00042 24.9 -0.5 20 161-180 4-23 (67)
202 2ehe_A Four and A half LIM dom 24.5 49 0.0017 21.8 2.6 40 130-179 16-55 (82)
203 2knc_B Integrin beta-3; transm 24.1 1.1E+02 0.0037 20.9 4.3 24 56-79 15-38 (79)
204 2kog_A Vesicle-associated memb 23.9 71 0.0024 23.5 3.5 21 56-76 98-118 (119)
205 2jmo_A Parkin; IBR, E3 ligase, 23.8 6.7 0.00023 26.9 -2.1 14 150-163 55-68 (80)
206 3kv4_A PHD finger protein 8; e 23.4 17 0.00058 33.2 -0.0 48 131-178 6-58 (447)
207 2d8z_A Four and A half LIM dom 23.4 55 0.0019 20.7 2.6 38 129-178 5-42 (70)
208 2cur_A Skeletal muscle LIM-pro 23.4 53 0.0018 20.8 2.5 38 129-178 5-42 (69)
209 1wig_A KIAA1808 protein; LIM d 23.3 54 0.0018 21.3 2.6 37 130-178 6-42 (73)
210 1wd2_A Ariadne-1 protein homol 23.0 17 0.0006 23.5 -0.0 35 130-164 7-45 (60)
211 1pi7_A VPU protein, U ORF prot 21.6 1.3E+02 0.0044 17.4 4.0 9 63-71 11-19 (36)
212 2fiy_A Protein FDHE homolog; F 20.7 8.4 0.00029 33.5 -2.6 48 128-176 181-231 (309)
213 2egq_A FHL1 protein; LIM domai 20.1 55 0.0019 21.2 2.1 38 130-178 16-57 (77)
214 2kpi_A Uncharacterized protein 20.0 36 0.0012 21.6 1.1 12 130-141 11-22 (56)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.73 E-value=2e-18 Score=126.71 Aligned_cols=80 Identities=29% Similarity=0.661 Sum_probs=70.1
Q ss_pred hHHHhcCCCHHHHhhCCceecccccCCCCCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 99 TKAINKGINKKALKAFPVVKYSAELKLPGLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 99 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
......+++++.++.+|.+.+.......+.+..|+||+++|..++.++.++ |+|.||..||..|+..+.+||+||..+.
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 344567899999999999999876655566789999999999999999999 9999999999999999999999999875
Q ss_pred c
Q 026797 179 E 179 (233)
Q Consensus 179 ~ 179 (233)
.
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-16 Score=111.45 Aligned_cols=68 Identities=34% Similarity=0.855 Sum_probs=57.3
Q ss_pred HhhCCceecccccCCCCCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 111 LKAFPVVKYSAELKLPGLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 111 ~~~lp~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
++.+|...+.... ....+..|+||+++|..++.++.++ |+|.||..||..|+..+.+||+||..+.+.
T Consensus 6 i~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4568888886543 2345678999999999999899999 999999999999999999999999987543
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.57 E-value=1e-15 Score=101.28 Aligned_cols=51 Identities=47% Similarity=1.169 Sum_probs=45.9
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
++.+|+||+++|..++.+..++.|+|.||..||..|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 457899999999998888888679999999999999999999999998763
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.6e-15 Score=105.35 Aligned_cols=53 Identities=32% Similarity=0.913 Sum_probs=48.2
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..+..|+||+++|..++.++.++ |+|.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 44678999999999988888888 999999999999999999999999988665
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=4.8e-15 Score=102.57 Aligned_cols=53 Identities=45% Similarity=0.938 Sum_probs=47.5
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..+..|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 45678999999998888888898 999999999999999999999999987543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.53 E-value=6.8e-15 Score=104.22 Aligned_cols=53 Identities=53% Similarity=1.079 Sum_probs=47.9
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..+.+|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 44678999999999888888898 999999999999999999999999988655
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8e-15 Score=105.21 Aligned_cols=53 Identities=28% Similarity=0.693 Sum_probs=42.7
Q ss_pred CCCccccccccccc-----------CceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 128 LDAECVICLSDFAL-----------GERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 128 ~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
.++.|+||+++|.. ++.++.++.|+|.||..||+.||..+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 35678888888854 444556656999999999999999999999999987543
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.46 E-value=3.7e-14 Score=93.57 Aligned_cols=49 Identities=31% Similarity=0.690 Sum_probs=42.6
Q ss_pred CCCcccccccccccCc-eeeecCCCCCccchhHHHHHHhcCCCCccccccc
Q 026797 128 LDAECVICLSDFALGE-RVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCL 177 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 177 (233)
.+.+|+||+++|..++ .+..++ |+|.||..||..|+..+.+||+||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 4578999999996544 567777 999999999999999889999999876
No 9
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=99.40 Aligned_cols=56 Identities=25% Similarity=0.612 Sum_probs=45.6
Q ss_pred cCCCCCCCcccccccccccCceeeecCCCC-----CccchhHHHHHHhcC--CCCcccccccccc
Q 026797 123 LKLPGLDAECVICLSDFALGERVRLLPKCN-----HGFHVRCIDRWLRSN--SSCPKCRHCLIET 180 (233)
Q Consensus 123 ~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~ 180 (233)
......+..|.||+++|..++.+ ++| |+ |.||..||+.||..+ .+||+||+.+...
T Consensus 9 s~~~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 9 SITPSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCCCTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 33445668999999999877766 588 96 999999999999765 4899999987654
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.42 E-value=7.9e-14 Score=105.63 Aligned_cols=51 Identities=29% Similarity=0.770 Sum_probs=41.3
Q ss_pred CCcccccccccccCc---------------eeeecCCCCCccchhHHHHHH-----hcCCCCcccccccccc
Q 026797 129 DAECVICLSDFALGE---------------RVRLLPKCNHGFHVRCIDRWL-----RSNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~l~~~ 180 (233)
+.+|+||+++|..+. .+++++ |+|.||..||..|+ ..+.+||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999996643 344677 99999999999999 4466899999987544
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=94.31 Aligned_cols=51 Identities=24% Similarity=0.610 Sum_probs=43.2
Q ss_pred CCCCcccccccccccC----ceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 127 GLDAECVICLSDFALG----ERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..+..|+||++.|... ..+..++ |||.||..||..|+..+.+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4457899999999763 3346777 9999999999999999999999999864
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.40 E-value=1.2e-13 Score=95.78 Aligned_cols=53 Identities=23% Similarity=0.590 Sum_probs=44.5
Q ss_pred CCCCcccccccccccC----ceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALG----ERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..+..|+||++.|.+. +....++ |||.||..||..|+..+.+||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 3457899999998763 4456777 999999999999999999999999987543
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.40 E-value=1.5e-13 Score=103.66 Aligned_cols=50 Identities=34% Similarity=0.689 Sum_probs=42.2
Q ss_pred CCCcccccccccccC-------------c--eeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 128 LDAECVICLSDFALG-------------E--RVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~-------------~--~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
.++.|+||++.|... + .++.++ |+|.||..||+.||..+.+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 467899999999754 1 356677 9999999999999999999999999853
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=93.28 Aligned_cols=52 Identities=23% Similarity=0.600 Sum_probs=43.7
Q ss_pred CCCcccccccccccC----ceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 128 LDAECVICLSDFALG----ERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
++.+|+||++.+... +.+..++ |||.||..||..|+..+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 357899999998753 3446777 999999999999999999999999987543
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.34 E-value=6.7e-13 Score=91.30 Aligned_cols=50 Identities=38% Similarity=0.846 Sum_probs=42.9
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
.+..|+||++.+.+ ....++ |||.||..|+..|+..+.+||+||..+...
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 45789999999864 346777 999999999999999999999999987644
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=6.2e-13 Score=92.54 Aligned_cols=50 Identities=30% Similarity=0.534 Sum_probs=42.7
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..+..|+||++.+.+ ...++ |+|.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 345789999999865 35567 999999999999999889999999988654
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4e-13 Score=93.02 Aligned_cols=49 Identities=37% Similarity=0.889 Sum_probs=42.7
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..+..|+||++.+.. ..++ |+|.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 345789999999876 5677 999999999999999899999999987654
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.4e-12 Score=89.78 Aligned_cols=51 Identities=27% Similarity=0.513 Sum_probs=42.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..+..|+||++.+.+ .+.+++ |+|.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 345789999999875 333446 999999999999999889999999987544
No 19
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.29 E-value=3.1e-13 Score=103.59 Aligned_cols=49 Identities=35% Similarity=0.721 Sum_probs=1.0
Q ss_pred CCCcccccccccccC-------------c--eeeecCCCCCccchhHHHHHHhcCCCCccccccc
Q 026797 128 LDAECVICLSDFALG-------------E--RVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCL 177 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~-------------~--~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 177 (233)
.++.|+||+++|... + .+..++ |+|.||..||+.||..+.+||+||..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 457899999999752 2 222345 999999999999999999999999975
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.9e-12 Score=92.17 Aligned_cols=52 Identities=29% Similarity=0.617 Sum_probs=43.9
Q ss_pred CCCCcccccccccccCce-eeecCCCCCccchhHHHHHHhcC---CCCccccccccc
Q 026797 127 GLDAECVICLSDFALGER-VRLLPKCNHGFHVRCIDRWLRSN---SSCPKCRHCLIE 179 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~l~~ 179 (233)
..+.+|+||++.|..++. .+.++ |||.||..||..|+..+ ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 445789999999987664 66777 99999999999999875 689999997644
No 21
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=4e-12 Score=89.70 Aligned_cols=51 Identities=25% Similarity=0.645 Sum_probs=42.6
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC--CCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN--SSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~ 180 (233)
+...+|+||++.+..++... .|+|.||..||..||+.+ .+||+||..+...
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 34578999999998876554 499999999999999887 7899999876533
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5e-12 Score=90.04 Aligned_cols=48 Identities=23% Similarity=0.460 Sum_probs=41.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..+..|+||++.|.. ..+++ |||.||..||..|+....+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345789999999965 34577 9999999999999998899999999874
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.23 E-value=7.4e-12 Score=87.85 Aligned_cols=51 Identities=22% Similarity=0.544 Sum_probs=40.9
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC--CCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN--SSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~ 180 (233)
..+..|+||++.|.+. ..++.|||.||..||..|+..+ ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 3457899999999753 3455599999999999999765 5899999975543
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.21 E-value=4.2e-12 Score=99.62 Aligned_cols=48 Identities=31% Similarity=0.839 Sum_probs=41.4
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
+..|+||++.|.. ...++ |||.||..||..|+..+.+||+||..+...
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 3579999999975 45678 999999999999999999999999987543
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=86.13 Aligned_cols=50 Identities=24% Similarity=0.569 Sum_probs=40.7
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHh---cCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR---SNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~l~~~ 180 (233)
..+..|+||++.+.+ ...++ |||.||..||..|+. .+..||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 345789999999875 44567 999999999999996 455899999987543
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=84.61 Aligned_cols=50 Identities=20% Similarity=0.514 Sum_probs=40.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHH-hcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWL-RSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~~~ 180 (233)
..+..|+||++.+.+. ..++ |||.||..||..|+ ..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3457899999998763 2367 99999999999999 4566899999987543
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.16 E-value=1.1e-11 Score=95.20 Aligned_cols=52 Identities=23% Similarity=0.599 Sum_probs=44.4
Q ss_pred CCCcccccccccccC----ceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 128 LDAECVICLSDFALG----ERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
++..|+||++.|.+. +.+..++ |||.||..||..|+..+.+||+||..+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 457899999999764 4446777 999999999999999999999999988654
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.14 E-value=2.6e-11 Score=90.00 Aligned_cols=48 Identities=29% Similarity=0.634 Sum_probs=40.2
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcC-CCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN-SSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~ 179 (233)
+..|+||++.|.. .+..++ |||.||..||..|+... .+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4679999999975 333377 99999999999999887 699999998754
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=4.9e-11 Score=84.82 Aligned_cols=49 Identities=31% Similarity=0.522 Sum_probs=40.9
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhc------CCCCccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS------NSSCPKCRHCLIE 179 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~ 179 (233)
..+..|+||++.|... ..++ |+|.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3457899999998763 3677 9999999999999977 6689999998754
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=5.4e-11 Score=80.54 Aligned_cols=43 Identities=28% Similarity=0.634 Sum_probs=35.9
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHh---cCCCCccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR---SNSSCPKC 173 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C 173 (233)
..+..|+||++.|.+ ...++ |||.||..||..|+. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 446789999999875 34567 999999999999997 45589998
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.12 E-value=4.4e-11 Score=84.32 Aligned_cols=47 Identities=21% Similarity=0.485 Sum_probs=40.0
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhc-CCCCcccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS-NSSCPKCRHCLI 178 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~ 178 (233)
.+..|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||..+.
T Consensus 7 ~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred ccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 45789999999975 34567 9999999999999986 778999999764
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=5.1e-11 Score=84.74 Aligned_cols=49 Identities=31% Similarity=0.611 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhc------CCCCccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS------NSSCPKCRHCLIE 179 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~ 179 (233)
..+..|+||++.+.+ ...++ |||.||..|+..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 345789999999875 34567 9999999999999976 6789999998754
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=4.4e-11 Score=81.55 Aligned_cols=51 Identities=22% Similarity=0.512 Sum_probs=40.1
Q ss_pred CCccccccc-ccccCcee-eecCCCCCccchhHHHHHHhc-CCCCcccccccccc
Q 026797 129 DAECVICLS-DFALGERV-RLLPKCNHGFHVRCIDRWLRS-NSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~-~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 180 (233)
+..|+||++ .+.+.... ..++ |||.||..||..|+.. ...||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 468999999 77665433 3466 9999999999999754 45799999987543
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=3.5e-11 Score=92.46 Aligned_cols=53 Identities=23% Similarity=0.590 Sum_probs=44.2
Q ss_pred CCCCcccccccccccC----ceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALG----ERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..+..|+||++.|... .....++ |||.||..||+.|+..+.+||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4457899999998763 2335666 999999999999999999999999988654
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=5.5e-11 Score=78.83 Aligned_cols=43 Identities=33% Similarity=0.908 Sum_probs=35.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHh---cCCCCccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR---SNSSCPKC 173 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C 173 (233)
..+..|+||++.+.+. ..++ |||.||..||..|+. .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3457899999999763 4567 999999999999954 56689998
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.10 E-value=1.6e-11 Score=86.52 Aligned_cols=49 Identities=29% Similarity=0.498 Sum_probs=40.7
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhc-------CCCCccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS-------NSSCPKCRHCLIE 179 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~l~~ 179 (233)
..+..|+||++.|.+ ...++ |||.||..||..|+.. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 345789999999876 34467 9999999999999976 5689999998754
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.10 E-value=4.6e-11 Score=88.18 Aligned_cols=48 Identities=27% Similarity=0.714 Sum_probs=40.3
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
+..|+||++.|.+ .+..++ |||.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI--AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC--cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3689999999975 333346 99999999999999988999999998754
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.08 E-value=6e-11 Score=88.97 Aligned_cols=48 Identities=29% Similarity=0.665 Sum_probs=41.0
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
+..|+||++.|.+ .+.+++ |||.||..||..|+..+.+||+||..+..
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 4689999999965 344447 99999999999999988999999998754
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=89.74 Aligned_cols=47 Identities=30% Similarity=0.574 Sum_probs=39.5
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCC-CCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS-SCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~ 179 (233)
+..|+||++.|.. ...++ |||.||..||..|+..+. .||+||..+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4679999999975 44567 999999999999997554 89999998754
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.03 E-value=1.4e-10 Score=93.36 Aligned_cols=48 Identities=38% Similarity=0.726 Sum_probs=40.3
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhc-CCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS-NSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 179 (233)
+..|+||++.|.+ .+.+++ |||.||..||..|+.. +..||+||..+..
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4589999999975 344457 9999999999999987 7789999998853
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.01 E-value=2.2e-10 Score=83.22 Aligned_cols=49 Identities=22% Similarity=0.561 Sum_probs=39.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC--CCCcccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN--SSCPKCRHCLI 178 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~ 178 (233)
..+..|+||++.|.+ ...++.|||.||..||..|+... ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345789999999975 33455599999999999999644 58999999863
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=1.9e-10 Score=86.24 Aligned_cols=46 Identities=28% Similarity=0.609 Sum_probs=38.4
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCC---CCccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS---SCPKCRHCLIE 179 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~l~~ 179 (233)
..|+||++.+.. ...++ |||.||..||..|+..+. +||+||..+..
T Consensus 22 ~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 579999999875 33467 999999999999998654 89999998754
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.95 E-value=8.6e-10 Score=78.44 Aligned_cols=53 Identities=23% Similarity=0.456 Sum_probs=40.5
Q ss_pred CCCCcccccccccccCce-eeecCCCCCccchhHHHHHHh-cCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGER-VRLLPKCNHGFHVRCIDRWLR-SNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 180 (233)
..+.+|+||++.+...+. ...++ |||.||..|+..|+. ....||+||..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 445789999999865432 22345 999999999999874 356899999987654
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.95 E-value=4.2e-10 Score=89.58 Aligned_cols=48 Identities=29% Similarity=0.562 Sum_probs=40.0
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCC-CCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS-SCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~ 180 (233)
+..|+||++.|.+ ...++ |||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4689999999875 34477 999999999999998665 899999987543
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.94 E-value=2.9e-10 Score=77.70 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=39.9
Q ss_pred CCCcccccccccccCceeeec--CCCCCc-cchhHHHHHHhcCCCCccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLL--PKCNHG-FHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
.+.+|.||++.+.+ ...+ | |||. |+..|+..|...+..||+||..+..
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 35689999998765 3344 8 9999 7999999999888899999998743
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.93 E-value=4.8e-10 Score=85.43 Aligned_cols=50 Identities=32% Similarity=0.618 Sum_probs=41.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCC-CCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS-SCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~ 180 (233)
..+..|+||++.+... ..++ |||.||..||..|+.... +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 3457899999998753 4567 999999999999997665 899999987653
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.92 E-value=5.3e-10 Score=84.73 Aligned_cols=48 Identities=35% Similarity=0.555 Sum_probs=40.3
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhc-CCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS-NSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 180 (233)
+..|+||++.+.+ ...++ |||.||..||..|+.. ..+||+||..+...
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 3679999999875 33467 9999999999999986 67899999987653
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.90 E-value=2.2e-10 Score=86.76 Aligned_cols=47 Identities=28% Similarity=0.663 Sum_probs=39.7
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhc-CCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS-NSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 179 (233)
+..|+||++.|.. ...++ |||.||..||..|+.. ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4689999999875 44567 9999999999999966 5689999998764
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.88 E-value=1.1e-09 Score=99.46 Aligned_cols=48 Identities=29% Similarity=0.665 Sum_probs=41.4
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHh-cCCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-SNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 180 (233)
...|+||++.+.. ...+| |||.||..|+..|+. ...+||+||..+...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4689999999865 56778 999999999999998 678999999987654
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.86 E-value=7.1e-10 Score=75.49 Aligned_cols=50 Identities=22% Similarity=0.390 Sum_probs=39.8
Q ss_pred CCCcccccccccccCceeeecCCCCCc-cchhHHHHHHhcCCCCccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHG-FHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
.+..|.||++...+. .+..+| |||. |+..|+..|...+..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 357899999986541 122348 9998 9999999999888899999998743
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=7.8e-10 Score=73.41 Aligned_cols=47 Identities=23% Similarity=0.464 Sum_probs=38.5
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
.++..|+||++.|.. .+.++ |||.||..|+..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 345789999999976 46678 9999999999885 66899999987543
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.81 E-value=2.8e-09 Score=76.81 Aligned_cols=48 Identities=19% Similarity=0.053 Sum_probs=41.6
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
.+..|+||++-|.+ ..+++ |||.|+..||..|+..+.+||+||..+..
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45789999999976 45677 99999999999999988999999987643
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.79 E-value=1.8e-09 Score=85.10 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=39.9
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCC-CCcccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS-SCPKCRHCLI 178 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~ 178 (233)
..+..|+||++.+.+. ..++ |||.||..||..|+.... +||+||..+.
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3457899999999763 4466 999999999999997665 8999999764
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.76 E-value=2e-09 Score=75.51 Aligned_cols=44 Identities=23% Similarity=0.616 Sum_probs=37.3
Q ss_pred CCcccccccccccCceeeecCCCCCc-cchhHHHHHHhcCCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHG-FHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
+..|+||++.+.+ ...+| |||. |+..|+..| ..||+||..+...
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 3679999998765 56678 9999 999999998 8899999987543
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.76 E-value=3.9e-09 Score=78.46 Aligned_cols=48 Identities=19% Similarity=0.047 Sum_probs=41.6
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
.+..|+||++-|.+ ..+++ |||.|+..||..|+..+.+||+||..+..
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 35789999999976 45667 99999999999999988899999998753
No 56
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.75 E-value=2.5e-09 Score=95.14 Aligned_cols=52 Identities=27% Similarity=0.609 Sum_probs=39.5
Q ss_pred CCCCcccccccccccCceee----ecCCCCCccchhHHHHHHhcC-----------CCCcccccccc
Q 026797 127 GLDAECVICLSDFALGERVR----LLPKCNHGFHVRCIDRWLRSN-----------SSCPKCRHCLI 178 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~----~lp~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~l~ 178 (233)
....+|+||++.+.++..+- ..+.|+|.||..|+.+||+.. .+||.||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45678999999988733221 123599999999999999642 36999999875
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=1.9e-09 Score=81.95 Aligned_cols=44 Identities=23% Similarity=0.481 Sum_probs=37.5
Q ss_pred CCcccccccccccCceeeec-CCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 129 DAECVICLSDFALGERVRLL-PKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
+..|+||++.|.. ...+ + |||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 4689999999975 3445 7 999999999999987 78999999874
No 58
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.74 E-value=6.1e-09 Score=77.13 Aligned_cols=48 Identities=21% Similarity=0.059 Sum_probs=41.3
Q ss_pred CCCcccccccccccCceeeecCCCC-CccchhHHHHHHhcCCCCccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCN-HGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
.+..|+||++-|.+ ..+++ || |.|+..||..|+..+.+||+||..+..
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 35789999999976 44567 99 999999999999988899999998753
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2.8e-08 Score=68.64 Aligned_cols=46 Identities=30% Similarity=0.704 Sum_probs=38.2
Q ss_pred CCCCcccccccccccCceeeecCCCCCc-cchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHG-FHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..+..|.||++...+ +..+| |+|. |+..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 446789999998754 77889 9999 99999984 47899999988654
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.63 E-value=2.1e-08 Score=67.63 Aligned_cols=47 Identities=26% Similarity=0.658 Sum_probs=36.2
Q ss_pred CCCCcccccccccccCceeeecCCCC--C---ccchhHHHHHHhc--CCCCccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCN--H---GFHVRCIDRWLRS--NSSCPKCRHCL 177 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~FH~~Ci~~Wl~~--~~~CP~CR~~l 177 (233)
+.+..|.||+++. ++.+ ++| |. | .||..|+..|+.. +.+||+|++.+
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 3457899999984 2333 577 65 4 9999999999964 57899999875
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.59 E-value=2.1e-08 Score=80.78 Aligned_cols=50 Identities=32% Similarity=0.614 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC-CCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN-SSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~~ 180 (233)
..+..|+||++.|.+. ..++ |||.|+..||..|+... .+||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 3457899999999763 4467 99999999999999764 4899999987653
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=2.7e-08 Score=72.58 Aligned_cols=48 Identities=21% Similarity=0.654 Sum_probs=39.6
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhc--------CCCCcc--cccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS--------NSSCPK--CRHC 176 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~ 176 (233)
...+|+||++++...+.+.+.+ |||.|+..|+..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3568999999998777666667 9999999999999853 236999 9987
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2.8e-08 Score=69.62 Aligned_cols=42 Identities=24% Similarity=0.626 Sum_probs=35.0
Q ss_pred CcccccccccccCceeeecCCCCCc-cchhHHHHHHhcCCCCccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHG-FHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
..|+||++.+.+ ...+| |||. |+..|+.. ...||+||..+..
T Consensus 26 ~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 579999999765 55678 9999 99999964 4789999998754
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=4.7e-08 Score=83.78 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=40.1
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC-CCCccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN-SSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~ 179 (233)
....|+||++-|.+ ..+++ |||.|+..||..|+..+ .+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 45789999999976 45677 99999999999999764 459999998753
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=3.9e-08 Score=71.96 Aligned_cols=46 Identities=26% Similarity=0.519 Sum_probs=36.7
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC------CCCcc--cccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN------SSCPK--CRHC 176 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~ 176 (233)
.+..|+||++.|.+ .+ +++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~d--PV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK--PV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS--EE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC--CE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45789999999975 33 443499999999999999754 48999 9855
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.46 E-value=3.9e-08 Score=69.82 Aligned_cols=44 Identities=25% Similarity=0.617 Sum_probs=36.9
Q ss_pred CCcccccccccccCceeeecCCCCCc-cchhHHHHHHhcCCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHG-FHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
+..|.||++.+.+ ...+| |||. |+..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 3579999998765 66788 9999 999999887 4899999987654
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.35 E-value=2.2e-07 Score=76.01 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=39.9
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC-CCCccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN-SSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~ 179 (233)
.+..|+||++-|.+ ..+++ |||.|+..||..|+..+ .+||+||..+..
T Consensus 105 ~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 45789999999986 44567 99999999999999764 479999987743
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.26 E-value=1.9e-07 Score=83.76 Aligned_cols=43 Identities=26% Similarity=0.689 Sum_probs=37.1
Q ss_pred CCcccccccccccCceeeecCCCCCc-cchhHHHHHHhcCCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHG-FHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
+..|+||++.+.. ...+| |||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4689999999865 56678 9999 999999988 789999998754
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.20 E-value=7.2e-07 Score=60.20 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=40.0
Q ss_pred CcccccccccccCceeeec-CCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 130 AECVICLSDFALGERVRLL-PKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
..|+||++-+.+ ..++ + |||.|...||.+|+..+.+||+++..+...
T Consensus 4 ~~CpIs~~~m~d---PV~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSS---EEEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCC---CEEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 579999999985 2344 5 999999999999998888999999987544
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.14 E-value=9e-07 Score=76.18 Aligned_cols=47 Identities=23% Similarity=0.556 Sum_probs=38.3
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcC--CCCcc--cccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN--SSCPK--CRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~l~ 178 (233)
+..|+||++.|.+ .|+... |||.|+..||..|+..+ ..||+ ||..+.
T Consensus 181 el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 181 ELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4679999999965 455455 99999999999999764 36999 998764
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.08 E-value=2.5e-06 Score=62.76 Aligned_cols=48 Identities=23% Similarity=0.455 Sum_probs=39.1
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHh-cCCCCccccccccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-SNSSCPKCRHCLIETC 181 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~~ 181 (233)
-|.+|--.+ ....|+.| |+|+|+.+|+..|.+ +.++||.|+..+...+
T Consensus 3 fC~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 478885554 35788999 999999999999974 5678999999887654
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.87 E-value=9e-06 Score=69.21 Aligned_cols=48 Identities=27% Similarity=0.687 Sum_probs=39.3
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCC--CCcccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS--SCPKCRHCLI 178 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~l~ 178 (233)
....|.||.+-...+..+. .|+|.||..|+..|++.+. .||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~---~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS---SSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccC---ccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3578999999988765543 4999999999999997654 8999988653
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.79 E-value=0.0087 Score=43.29 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=37.3
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
-..|-.|+-+.+. ++ .-.+|.++..|+...|.....||+|++.|...
T Consensus 28 ~~nCKsCWf~~k~---LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENKG---LV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCSS---EE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cccChhhccccCC---ee--eecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3679999977543 32 21469999999999999999999999998765
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.51 E-value=0.0094 Score=40.43 Aligned_cols=47 Identities=26% Similarity=0.422 Sum_probs=34.1
Q ss_pred CCCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCC----CCcccccc
Q 026797 126 PGLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS----SCPKCRHC 176 (233)
Q Consensus 126 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 176 (233)
...+..|.||.+. ++ +..-..|...||..|++..|.... .||.|+..
T Consensus 9 ~~~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3455789999753 33 444456999999999998875443 69999764
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.57 E-value=0.042 Score=39.58 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=25.7
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHH
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRW 163 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 163 (233)
+..|.||++++.......-+. |+|.|+..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 467999998754433344466 9999999999983
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.48 E-value=0.15 Score=36.16 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=24.2
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHH
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRW 163 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 163 (233)
..|+.|.||- .+..++...-- .|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceeccc-cccccccHhhcccc
Confidence 4678999995 34443432222 39999999999996
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.22 E-value=0.061 Score=35.74 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=34.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHh-----cCCCCccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-----SNSSCPKCRH 175 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~ 175 (233)
.++..|+||...+.++...+.-..|..-||..|+..-.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 345679999988865554444456999999999865321 3446999965
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=90.09 E-value=0.18 Score=33.30 Aligned_cols=45 Identities=29% Similarity=0.750 Sum_probs=31.6
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC----CCCccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN----SSCPKCRH 175 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~ 175 (233)
..+..|.+|... ++ +..-..|...||..|+..-+... -.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999863 33 44444699999999998754322 25999965
No 79
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=89.17 E-value=0.14 Score=41.49 Aligned_cols=48 Identities=19% Similarity=0.395 Sum_probs=35.1
Q ss_pred CcccccccccccCce---eeecCCCCCccchhHHHHH------Hh-----cCCCCccccccc
Q 026797 130 AECVICLSDFALGER---VRLLPKCNHGFHVRCIDRW------LR-----SNSSCPKCRHCL 177 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~---~~~lp~C~H~FH~~Ci~~W------l~-----~~~~CP~CR~~l 177 (233)
..|+||...|.+++. .+....|..-||..|+..- +. ....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 569999999988762 5555569999999997421 11 156899998754
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=88.94 E-value=0.099 Score=42.91 Aligned_cols=46 Identities=28% Similarity=0.499 Sum_probs=33.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC----CCCcccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN----SSCPKCRHC 176 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 176 (233)
.+++.|.+|... | .+.....|...||..|+.+.+... -.||.|+..
T Consensus 5 ~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 456789999743 3 355555799999999998766432 259999864
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=88.09 E-value=0.11 Score=41.69 Aligned_cols=46 Identities=28% Similarity=0.526 Sum_probs=33.0
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC----CCCccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN----SSCPKCRHCL 177 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~l 177 (233)
+++.|.+|.+. |+ +.....|.-.||..|+..-+... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45789999754 44 44445699999999987766432 2599998753
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.53 E-value=0.13 Score=33.93 Aligned_cols=46 Identities=24% Similarity=0.570 Sum_probs=31.3
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC----CCCcccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN----SSCPKCRHC 176 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 176 (233)
.++..|.||.+. ++ +..-..|...||..|+..-+... -.||.|+..
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 456789999752 33 33444589999999998644322 259999764
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.07 E-value=0.18 Score=34.43 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=34.5
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhc----CCCCccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS----NSSCPKCRHCL 177 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l 177 (233)
.....|.||..... ++.+..-..|.-.||..|+..-... .-.||.|+..+
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 34467999987653 4445555569999999999765432 33699997654
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.60 E-value=0.36 Score=30.32 Aligned_cols=44 Identities=27% Similarity=0.640 Sum_probs=29.0
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHhcC----CCCccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN----SSCPKCRH 175 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~ 175 (233)
.|.||...-..+ .+..-..|...||..|++.=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488997654333 344445699999999997544322 24998864
No 85
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=84.41 E-value=0.1 Score=34.28 Aligned_cols=47 Identities=23% Similarity=0.729 Sum_probs=32.1
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC----CCCcccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN----SSCPKCRHCLI 178 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~l~ 178 (233)
++..|.+|... ++ +..-..|...||..|+..-+... -.||.|+....
T Consensus 4 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45789999864 33 33444699999999998644322 25999976543
No 86
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=83.74 E-value=0.17 Score=33.91 Aligned_cols=45 Identities=29% Similarity=0.676 Sum_probs=31.3
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC----CCCccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN----SSCPKCRH 175 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~ 175 (233)
.++..|.||.+. ++ +..-..|...||..|+..-+... -.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999864 33 44444699999999998644322 25999965
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.80 E-value=0.16 Score=32.85 Aligned_cols=45 Identities=27% Similarity=0.814 Sum_probs=30.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCC----CCccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS----SCPKCRH 175 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~ 175 (233)
.++..|.+|... ++ +..-..|...||..|+..-+.... .||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999864 33 444446999999999986443222 4888753
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.19 E-value=1.1 Score=30.77 Aligned_cols=48 Identities=19% Similarity=0.468 Sum_probs=32.1
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHh-----cCCCCccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-----SNSSCPKCRHCL 177 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l 177 (233)
...| ||...+..+...+.-..|..-||..|+..-.. ....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3557 99888754444444446999999999853221 344699998753
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=82.15 E-value=0.4 Score=35.19 Aligned_cols=47 Identities=26% Similarity=0.632 Sum_probs=30.6
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhc----CCCCcccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS----NSSCPKCR 174 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR 174 (233)
.+++.|.||.+.=+..+.+ .-..|+..||..|+..++.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll-~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQF-FCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSE-ECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCe-ECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4578999998763222223 33459999999999887532 12466654
No 90
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=82.11 E-value=0.98 Score=30.15 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=26.6
Q ss_pred CCCcccccccccccCceeeecC-CCCCccchhHHH
Q 026797 128 LDAECVICLSDFALGERVRLLP-KCNHGFHVRCID 161 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~ 161 (233)
....|.+|...+..++..+.-. .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3467999999988776666665 699999999974
No 91
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=80.08 E-value=0.42 Score=35.31 Aligned_cols=45 Identities=27% Similarity=0.587 Sum_probs=30.1
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHhcC----CCCccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN----SSCPKCRH 175 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~ 175 (233)
.|.||.+.-.+++.+..-..|...||..|+++-|... -.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 6888886433333444555699999999987655432 25998874
No 92
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=79.82 E-value=0.6 Score=29.59 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=30.1
Q ss_pred cccccccccccCceeeecC-CCCCccchhHHHHHH----hcCCCCcccc
Q 026797 131 ECVICLSDFALGERVRLLP-KCNHGFHVRCIDRWL----RSNSSCPKCR 174 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl----~~~~~CP~CR 174 (233)
.|.+|...+..++..+.-. .|..-||..|+..-. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988886655555555 588899999975321 2456799885
No 93
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=79.24 E-value=0.97 Score=29.83 Aligned_cols=50 Identities=22% Similarity=0.622 Sum_probs=33.7
Q ss_pred CCCCccccccccccc-CceeeecCCCCCccchhHHHHHHh-------cCCCCcccccc
Q 026797 127 GLDAECVICLSDFAL-GERVRLLPKCNHGFHVRCIDRWLR-------SNSSCPKCRHC 176 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~ 176 (233)
+++..|.||...... +..+..-..|.-.||..|+..=+. ..-.|+.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456789999976432 334555556999999999876331 22358888653
No 94
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=78.98 E-value=0.46 Score=38.44 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=30.4
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcC----CCCcccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN----SSCPKCRHC 176 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 176 (233)
++.|.+|.+. ++ +.....|...||..|+..=+... -.||.|+..
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999854 33 33344589999999997644322 259999765
No 95
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=77.11 E-value=0.52 Score=37.26 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=32.6
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHH-----hcCCCCcccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWL-----RSNSSCPKCRHC 176 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~ 176 (233)
....| +|......+........|...||..|+..-. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34678 9988765444444555699999999985321 134479999763
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=76.40 E-value=0.9 Score=32.34 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=32.4
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCC----CCcccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNS----SCPKCRHC 176 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 176 (233)
.++..|.+|... ++ +..-..|.-.||..|+++=+.... .||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999864 33 444446889999999977554322 59999764
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.19 E-value=1.1 Score=32.37 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=29.8
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhc---CCCCcccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS---NSSCPKCRHC 176 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~ 176 (233)
..| ||-.....+..+ .-..|.-.||..|+..=+.. .-.||.|+..
T Consensus 29 vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 457 887766555444 44569999999998653221 2369999743
No 98
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.96 E-value=0.4 Score=34.30 Aligned_cols=48 Identities=21% Similarity=0.460 Sum_probs=32.5
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcC----CCCcccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN----SSCPKCRHC 176 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 176 (233)
++..|.||...-.. +.+..-..|...||..|+..=|... =.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45679999876433 3344555699999999997533322 259999654
No 99
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=75.79 E-value=2.8 Score=29.51 Aligned_cols=50 Identities=22% Similarity=0.410 Sum_probs=33.5
Q ss_pred CCCCccccccccc-ccCceeeecCCCCCccchhHHHHHHh--cCCCCcccccc
Q 026797 127 GLDAECVICLSDF-ALGERVRLLPKCNHGFHVRCIDRWLR--SNSSCPKCRHC 176 (233)
Q Consensus 127 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~ 176 (233)
.++..|.||...- ..++.+..-..|.-.||..|+..-+. ..-.||.|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 4567899998753 23335555567999999999975321 12259999654
No 100
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=75.74 E-value=3.1 Score=32.13 Aligned_cols=46 Identities=28% Similarity=0.590 Sum_probs=32.5
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHh-----------cCCCCcccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-----------SNSSCPKCRHC 176 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----------~~~~CP~CR~~ 176 (233)
+.++.|.+|.+. |+ +..-..|...||..||+.=+. ..-.||+|+..
T Consensus 61 g~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 567899999764 33 334445999999999996552 12269999753
No 101
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.74 E-value=1.6 Score=29.76 Aligned_cols=46 Identities=22% Similarity=0.409 Sum_probs=30.3
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHH---------hcCCCCcccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWL---------RSNSSCPKCRHC 176 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---------~~~~~CP~CR~~ 176 (233)
...| ||...+..+.. +.-..|..-||..|+..-. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~M-I~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFM-ICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCE-EECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCE-EEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3557 89887654333 3444599999999984221 245679999753
No 102
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=71.91 E-value=4.2 Score=27.47 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=32.7
Q ss_pred CCCCccccccccc-ccCceeeecCCCCCccchhHHHHHHh--cCCCCccccc
Q 026797 127 GLDAECVICLSDF-ALGERVRLLPKCNHGFHVRCIDRWLR--SNSSCPKCRH 175 (233)
Q Consensus 127 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~CR~ 175 (233)
..+..|.||.+.- .+++.+..-..|.-.||..|+..-.. ..=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4567899998753 23345555567999999999875321 1225888854
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=70.90 E-value=5.5 Score=29.08 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=23.2
Q ss_pred CCcccccccccc-----cCceeeecCCCCCccchhHHHH
Q 026797 129 DAECVICLSDFA-----LGERVRLLPKCNHGFHVRCIDR 162 (233)
Q Consensus 129 ~~~C~ICl~~~~-----~~~~~~~lp~C~H~FH~~Ci~~ 162 (233)
...|.+|+..-. .++.+..-..|+..||..|+..
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 467999987631 2233444445999999999953
No 104
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=70.88 E-value=0.51 Score=33.42 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=34.0
Q ss_pred CCccccccccccc-CceeeecCCCCCccchhHHHHHHh--------cCCCCccccccc
Q 026797 129 DAECVICLSDFAL-GERVRLLPKCNHGFHVRCIDRWLR--------SNSSCPKCRHCL 177 (233)
Q Consensus 129 ~~~C~ICl~~~~~-~~~~~~lp~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~l 177 (233)
+..|.||...-.. +..+..-..|...||..|+..-|. ..-.|+.|+...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 4689999876432 234555567999999999986543 122699997654
No 105
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=70.81 E-value=2.3 Score=31.01 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=33.7
Q ss_pred CCcccccccccccCceeeecC-CCCCccchhHHHHHH-----h-----cCCCCcccccc
Q 026797 129 DAECVICLSDFALGERVRLLP-KCNHGFHVRCIDRWL-----R-----SNSSCPKCRHC 176 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl-----~-----~~~~CP~CR~~ 176 (233)
...|.||...+.++...+.-. .|..-||..|+.--- . ..-.||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 357999999986655555553 589999999974221 0 33469999764
No 106
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=70.46 E-value=5.4 Score=30.25 Aligned_cols=47 Identities=28% Similarity=0.559 Sum_probs=32.2
Q ss_pred CCCCCcccccccccccCceeeecCCCCCccchhHHHHHH------hc-----CCCCcccccc
Q 026797 126 PGLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWL------RS-----NSSCPKCRHC 176 (233)
Q Consensus 126 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl------~~-----~~~CP~CR~~ 176 (233)
.+.++.|.||.+. ++ +..-..|-..||..||..-+ .. .=.|++|+-.
T Consensus 54 Dg~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3566789999864 33 44445699999999999742 11 1269999654
No 107
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=70.19 E-value=13 Score=23.88 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026797 54 KNVLIVLSVLVCTVICTIVLNFVIKCALS 82 (233)
Q Consensus 54 ~~viiil~ill~~~i~~l~l~~i~rc~~r 82 (233)
+..+++++++...+++++++..+++|-.-
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GFF 36 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGFF 36 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 34455566666666666655566665443
No 108
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=69.72 E-value=19 Score=23.04 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026797 55 NVLIVLSVLVCTVICTIVLNFVIKCALS 82 (233)
Q Consensus 55 ~viiil~ill~~~i~~l~l~~i~rc~~r 82 (233)
..+++++++...+++++++..+++|-.-
T Consensus 12 ~wiIi~svl~GLllL~li~~~LwK~GFF 39 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMWKVGFF 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 4455556666666655555556665443
No 109
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=68.44 E-value=3.4 Score=30.34 Aligned_cols=44 Identities=23% Similarity=0.548 Sum_probs=28.6
Q ss_pred CCCCcccccccccccCceeeecC--CCCCccchhHHHHHHhcCC----CCcccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLP--KCNHGFHVRCIDRWLRSNS----SCPKCRHC 176 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~ 176 (233)
.+++.|.+|.+ .++ +..-. .|...||..|+. |.... .||.|+-.
T Consensus 13 ~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 13 MHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp SSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 45678999983 233 43433 488999999997 43322 48876543
No 110
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=66.35 E-value=4.5 Score=27.31 Aligned_cols=45 Identities=27% Similarity=0.607 Sum_probs=28.0
Q ss_pred CCCCcccccccccccCceeeecCC--CC-CccchhHHHHHHhc----CCCCcccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPK--CN-HGFHVRCIDRWLRS----NSSCPKCRHC 176 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~ 176 (233)
.+...| ||..... ++ ++.-.. |. .-||..|+. |.. .-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 344567 8977532 43 333334 55 689999997 332 2369999764
No 111
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=66.23 E-value=1 Score=31.11 Aligned_cols=44 Identities=30% Similarity=0.748 Sum_probs=27.5
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHhc----C-CCCccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS----N-SSCPKCRH 175 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~-~~CP~CR~ 175 (233)
.|.||...-.. +.+..-..|...||..|++.-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666554332 334444569999999999865532 1 25888865
No 112
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=65.65 E-value=0.91 Score=30.70 Aligned_cols=47 Identities=28% Similarity=0.437 Sum_probs=31.3
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHH----hcCCCCcccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWL----RSNSSCPKCRHC 176 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl----~~~~~CP~CR~~ 176 (233)
...| ||......++..+.-..|..-||..|+..-- .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 3568 7988765555444545699999999986531 223469999653
No 113
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=65.15 E-value=1.5 Score=29.63 Aligned_cols=44 Identities=30% Similarity=0.739 Sum_probs=27.8
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHhc-----CCCCccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS-----NSSCPKCRH 175 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 175 (233)
.|.||...-.. ..+..-..|...||..|++.=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 46677654322 334454569999999999854432 225888864
No 114
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=64.91 E-value=16 Score=24.48 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026797 62 VLVCTVICTIVLNFVIKCA 80 (233)
Q Consensus 62 ill~~~i~~l~l~~i~rc~ 80 (233)
++..++.++++..+.+.|.
T Consensus 13 vlGg~~~lll~~glcI~cc 31 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFS 31 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHh
Confidence 3333333344444444433
No 115
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.85 E-value=4.7 Score=28.71 Aligned_cols=44 Identities=27% Similarity=0.618 Sum_probs=27.4
Q ss_pred CCCcccccccccccCceeeecCC--CC-CccchhHHHHHHhc----CCCCcccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPK--CN-HGFHVRCIDRWLRS----NSSCPKCRHC 176 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~ 176 (233)
....| ||..... ++ ++.-.. |. .-||..|+. |.. +-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 34567 9987642 33 333334 54 689999997 322 2369999764
No 116
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=62.73 E-value=1.8 Score=29.00 Aligned_cols=46 Identities=26% Similarity=0.544 Sum_probs=29.9
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHH---hcCCCCccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWL---RSNSSCPKCRH 175 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---~~~~~CP~CR~ 175 (233)
....| ||..... ++..+.-..|..-||..|+..-- .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34568 9987765 44344444599999999986432 12346888864
No 117
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=61.99 E-value=9.6 Score=26.30 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026797 57 LIVLSVLVCTVICTIVLNFVIKCAL 81 (233)
Q Consensus 57 iiil~ill~~~i~~l~l~~i~rc~~ 81 (233)
.++++++.+++++.+++.++++++.
T Consensus 12 ~Iv~gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555443
No 118
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=61.67 E-value=5 Score=29.44 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=23.0
Q ss_pred Cccccccccccc------CceeeecCCCCCccchhHHHHH
Q 026797 130 AECVICLSDFAL------GERVRLLPKCNHGFHVRCIDRW 163 (233)
Q Consensus 130 ~~C~ICl~~~~~------~~~~~~lp~C~H~FH~~Ci~~W 163 (233)
+.|.||+..-.. ++.+..-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 569999875421 2233444459999999998754
No 119
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=60.77 E-value=1.2 Score=33.52 Aligned_cols=47 Identities=21% Similarity=0.485 Sum_probs=30.1
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRH 175 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 175 (233)
...|..|-..|..-..-.....||.+|+..|..........|-.|..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 36899999998653322222359999999997766555667877744
No 120
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.94 E-value=2.3 Score=29.32 Aligned_cols=46 Identities=24% Similarity=0.616 Sum_probs=29.6
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhc-----CCCCccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS-----NSSCPKCRH 175 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 175 (233)
+..|.||...-.. ..+..-..|...||..|+++=|.. .=.||.|+.
T Consensus 26 ~c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3478899864333 334454569999999999854322 225888864
No 121
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.51 E-value=3.1 Score=28.47 Aligned_cols=47 Identities=19% Similarity=0.443 Sum_probs=30.2
Q ss_pred CCCcccccccccccCceeeecC--CCCCccchhHHHHHHh---------cCCCCcccccc
Q 026797 128 LDAECVICLSDFALGERVRLLP--KCNHGFHVRCIDRWLR---------SNSSCPKCRHC 176 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~ 176 (233)
....| ||-.....+..+ .-. .|..-||..|+.---. .+..||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI-~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEE-EECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34568 898774444333 333 5999999999854211 24469999764
No 122
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=58.75 E-value=3.5 Score=23.10 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=20.5
Q ss_pred CcccccccccccCceeeecCCCCCccchhHH
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCI 160 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci 160 (233)
+.|+.|-..+-..+++.. -|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 479999888766555542 6789999884
No 123
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=57.22 E-value=12 Score=25.60 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 026797 66 TVICTIVLNFVIKCALSSLRLLL 88 (233)
Q Consensus 66 ~~i~~l~l~~i~rc~~r~~~~~~ 88 (233)
++..+-.+++.++|++|-.|...
T Consensus 23 avaalg~li~gcwcylrlqri~q 45 (90)
T 1zza_A 23 AIAALGALILGCWCYLRLQRISQ 45 (90)
T ss_dssp HHHHHHHHHHHHHTTTSSCSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334445556667776665444
No 124
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=57.08 E-value=5.7 Score=25.96 Aligned_cols=43 Identities=28% Similarity=0.453 Sum_probs=28.8
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKC 173 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 173 (233)
..|-.|...|.... .-.-++|++.|+.+|=.---..-..||.|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45999999885432 23356799999999933321334479988
No 125
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=56.80 E-value=8.9 Score=25.71 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=22.9
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHH
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCID 161 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~ 161 (233)
+..|.+|...|..-..-.--..||.+|+..|-.
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 358999999987533222222499999999854
No 126
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=56.14 E-value=9.3 Score=38.27 Aligned_cols=48 Identities=19% Similarity=0.050 Sum_probs=39.7
Q ss_pred CCCcccccccccccCceeeecCCCC-CccchhHHHHHHhcCCCCccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCN-HGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
.+-.|+|-++-+.+ ..++| -| +.|-..+|..|+..+.+||+=|.++..
T Consensus 890 ~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 34679999999876 45667 66 689999999999999999999888754
No 127
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.44 E-value=10 Score=25.04 Aligned_cols=41 Identities=22% Similarity=0.566 Sum_probs=30.9
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
....|+.|-+.+..++.+.. -+..||..| -.|-.|+..|..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 34689999999887776543 678999877 458888887753
No 128
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=55.43 E-value=15 Score=22.48 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=11.8
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHH
Q 026797 50 SNLDKNVLIVLSVLVCTVICTIVL 73 (233)
Q Consensus 50 ~~~~~~viiil~ill~~~i~~l~l 73 (233)
++......-+++-+++++++++++
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~ 30 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTF 30 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEeehHHHHHHHHHHHHH
Confidence 344455566666444444444333
No 129
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=54.66 E-value=26 Score=24.38 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=28.8
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS 166 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~ 166 (233)
.....|.+|.+.+++..-+.--..=.|.|+..|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 3446899999998875544322234699999999988864
No 130
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=54.39 E-value=6.8 Score=29.32 Aligned_cols=33 Identities=21% Similarity=0.552 Sum_probs=23.0
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHH
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDR 162 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 162 (233)
..|.+|...|..-..-.--..||++|+..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 579999999875432222224999999998544
No 131
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=53.85 E-value=8.3 Score=27.03 Aligned_cols=50 Identities=20% Similarity=0.475 Sum_probs=31.2
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHh-------cCCCCccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-------SNSSCPKCRHCL 177 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~l 177 (233)
....|.+|...|..-..-.--..||++|+..|....+. ....|-.|...+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 34689999999875432222224999999999765421 123466665544
No 132
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.60 E-value=14 Score=24.97 Aligned_cols=43 Identities=28% Similarity=0.557 Sum_probs=30.9
Q ss_pred CCCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
.....|+.|-..+...+.+.. -+..||..| -+|-.|+..|...
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCC
Confidence 344689999998876665543 578999988 4577887776544
No 133
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=53.52 E-value=25 Score=21.26 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026797 56 VLIVLSVLVCTVICTIVLNFVIKCALSS 83 (233)
Q Consensus 56 viiil~ill~~~i~~l~l~~i~rc~~r~ 83 (233)
..++++++..++++.+++.+++|++...
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliwk~~~~i 37 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIWKLLITI 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 3444455555555555555566655443
No 134
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=53.43 E-value=3.3 Score=34.53 Aligned_cols=45 Identities=29% Similarity=0.726 Sum_probs=26.2
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhc-----CCCCccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS-----NSSCPKCRH 175 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 175 (233)
..|.+|...-.. ..+.....|...||..|+++=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 358888764322 334455569999999999854432 225999964
No 135
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=53.35 E-value=8.9 Score=26.34 Aligned_cols=35 Identities=23% Similarity=0.520 Sum_probs=24.3
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHH
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRW 163 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 163 (233)
...|.+|...|..-..-.--..||.+|+..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 35799999998754322222359999999996543
No 136
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=53.22 E-value=10 Score=25.41 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=16.3
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhcc
Q 026797 58 IVLS-VLVCTVICTIVLNFVIKCALSSLR 85 (233)
Q Consensus 58 iil~-ill~~~i~~l~l~~i~rc~~r~~~ 85 (233)
++++ ++..+++..+.+++.+||..|+++
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrq 40 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQ 40 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4554 444444555566667888765554
No 137
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=52.86 E-value=7.9 Score=27.19 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=24.9
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHH
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWL 164 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 164 (233)
..|.+|...|..-..-..-..||++|+..|...+.
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 57999999987543222233599999999976653
No 138
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=52.84 E-value=9.2 Score=26.40 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=24.4
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHH
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRW 163 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 163 (233)
...|.+|...|..-..-.--..||++|+..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 46899999998754322222249999999996554
No 139
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=52.13 E-value=3.1 Score=30.52 Aligned_cols=26 Identities=38% Similarity=0.730 Sum_probs=17.0
Q ss_pred CCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 150 KCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 150 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
+||+.|. .=+.....||.|+..-++.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCC
Confidence 4999981 1123456799998875554
No 140
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=51.67 E-value=7.9 Score=29.45 Aligned_cols=49 Identities=16% Similarity=0.409 Sum_probs=30.3
Q ss_pred CCCCcccccccccc-cCceeeecCCCCCccchhHHHHHHhcC-C---CCccccc
Q 026797 127 GLDAECVICLSDFA-LGERVRLLPKCNHGFHVRCIDRWLRSN-S---SCPKCRH 175 (233)
Q Consensus 127 ~~~~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~---~CP~CR~ 175 (233)
..+..|.+|...|. ....-+.-..|+|.+|..|-..-.... . .|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 35688999999983 323334444599999998854311111 1 3777765
No 141
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=51.44 E-value=6.7 Score=32.01 Aligned_cols=35 Identities=20% Similarity=0.460 Sum_probs=24.0
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHH
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDR 162 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~ 162 (233)
.+..|.+|...|.--..-.-...||++||..|-..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 45799999999864332222224999999988544
No 142
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=51.41 E-value=29 Score=20.96 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 026797 55 NVLIVLSVLVCTVICTIVLNFVIKC 79 (233)
Q Consensus 55 ~viiil~ill~~~i~~l~l~~i~rc 79 (233)
..+++++++...+++.++...+.+|
T Consensus 10 ~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555555555555555455544
No 143
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=51.27 E-value=2.3 Score=30.97 Aligned_cols=45 Identities=24% Similarity=0.673 Sum_probs=28.8
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHhc----CCCCcccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRS----NSSCPKCRHC 176 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 176 (233)
.|.+|...-.. +.+..-..|...||..|+++=+.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 47777665333 234444569999999999864432 2258888654
No 144
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=51.20 E-value=31 Score=24.43 Aligned_cols=51 Identities=18% Similarity=0.369 Sum_probs=33.6
Q ss_pred CCCcccccccccccC---ceeeecCCCCCccchhHHHHHH-hcCCCCcccccccc
Q 026797 128 LDAECVICLSDFALG---ERVRLLPKCNHGFHVRCIDRWL-RSNSSCPKCRHCLI 178 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~---~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~ 178 (233)
....|.||-+++-.. +.-.....|+--.++.|.+-=. ..++.||-|+..+-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 346899999986432 2211122366677888986544 45778999988764
No 145
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.12 E-value=14 Score=24.92 Aligned_cols=40 Identities=23% Similarity=0.550 Sum_probs=29.7
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
....|+-|-..+..++.+.. -+..||.+| -.|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 34689999999877666554 567899877 45788887764
No 146
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=50.54 E-value=4.1 Score=26.41 Aligned_cols=42 Identities=31% Similarity=0.718 Sum_probs=26.4
Q ss_pred CCcccccccccccCceeeecCC--CC-CccchhHHHHHHhc----CCCCccccc
Q 026797 129 DAECVICLSDFALGERVRLLPK--CN-HGFHVRCIDRWLRS----NSSCPKCRH 175 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 175 (233)
...| ||.... .++ ++.-.. |. .-||..|+. |.. .-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4557 897753 343 444445 55 699999997 332 235998864
No 147
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.13 E-value=7.6 Score=31.95 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=25.0
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHH
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRW 163 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W 163 (233)
.+..|.+|...|..-..-.-...||++||..|-..+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 357899999998754322223359999999996543
No 148
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=49.63 E-value=25 Score=21.53 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 026797 63 LVCTVICTIVLNFVIK 78 (233)
Q Consensus 63 ll~~~i~~l~l~~i~r 78 (233)
+++++++.+++.+++|
T Consensus 21 vll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhee
Confidence 3344444444444443
No 149
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.24 E-value=13 Score=24.42 Aligned_cols=42 Identities=26% Similarity=0.517 Sum_probs=29.2
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
....|+.|-..+..++.+... -+..||..| -.|-.|...|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 347899999998755544321 577899877 357788777654
No 150
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=48.89 E-value=21 Score=21.85 Aligned_cols=11 Identities=0% Similarity=0.416 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 026797 68 ICTIVLNFVIK 78 (233)
Q Consensus 68 i~~l~l~~i~r 78 (233)
++++++++++|
T Consensus 26 ii~~~~~~~~R 36 (44)
T 2ks1_B 26 VVALGIGLFMR 36 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 33333334443
No 151
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=48.05 E-value=4.4 Score=26.30 Aligned_cols=42 Identities=29% Similarity=0.710 Sum_probs=25.7
Q ss_pred CCcccccccccccCceeeecCC--CC-CccchhHHHHHHhc----CCCCccccc
Q 026797 129 DAECVICLSDFALGERVRLLPK--CN-HGFHVRCIDRWLRS----NSSCPKCRH 175 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 175 (233)
...| ||.... .++ +..-.. |. ..||..|+. |.. .-.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4557 897753 233 444344 44 689999997 432 235998854
No 152
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.98 E-value=12 Score=25.70 Aligned_cols=33 Identities=24% Similarity=0.585 Sum_probs=22.2
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHH
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCID 161 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~ 161 (233)
...|.+|...|..-..-.--..||.+|+..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 357999999986432111122499999998843
No 153
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=45.93 E-value=10 Score=24.38 Aligned_cols=42 Identities=26% Similarity=0.547 Sum_probs=30.4
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
...|+.|-..+..++.+... -+..||..|+ .|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 46899999998876654321 5678998885 588888777543
No 154
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=44.14 E-value=18 Score=32.24 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=29.3
Q ss_pred CcccccccccccCceeeecCCCCCc--cchhHHHHHHhcC--CCCcccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHG--FHVRCIDRWLRSN--SSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~--FH~~Ci~~Wl~~~--~~CP~CR~~l~ 178 (233)
..|++=...+.. .+|-.. |.|. |-..-+.....+. -.||+|...+.
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 569987777654 466666 9997 5544333332222 36999988764
No 155
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=44.03 E-value=23 Score=24.05 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 128 LDAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
....|..|-+.+.. +.+. .-+..||.+| -.|-.|...|..
T Consensus 24 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVVK---ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCEE---SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEEE---ECCceECccC--------CEecCCCCCCCC
Confidence 34679999988874 3322 2678999888 348888877754
No 156
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=43.25 E-value=2.9 Score=30.76 Aligned_cols=46 Identities=22% Similarity=0.603 Sum_probs=29.7
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHhcC----CCCccccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSN----SSCPKCRHCL 177 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~l 177 (233)
.|.||...-..++ +..-..|...||..|++.=|... -.||.|+..+
T Consensus 60 ~C~~C~~~~~~~~-ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQ-LLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTT-EEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCc-eEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 5888877543333 44444699999999988543322 2488886543
No 157
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=43.07 E-value=17 Score=24.29 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=24.1
Q ss_pred CCCcccccccccccCceeeecCCC-CCccchhHHHHH
Q 026797 128 LDAECVICLSDFALGERVRLLPKC-NHGFHVRCIDRW 163 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~lp~C-~H~FH~~Ci~~W 163 (233)
+..-|.||.++ ..++-+. | +-+|+..|+.+.
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 44679999987 3477776 9 789999997664
No 158
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.94 E-value=17 Score=23.50 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=28.6
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
...|..|-..+..++.+.. .-+..||..| -+|-.|...|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE--YGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC--STTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEE--ECccccCccc--------CeECCCCCcCCC
Confidence 3579999998876433322 2678999877 357888877654
No 159
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=42.54 E-value=5.2 Score=27.05 Aligned_cols=46 Identities=20% Similarity=0.484 Sum_probs=30.1
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHh-----cCCCCcccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-----SNSSCPKCRHC 176 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 176 (233)
..| ||...+..+...+.-..|.--||..|+..--. ....||.|+..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 345 88876654444444456999999999954321 23469999764
No 160
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=42.20 E-value=23 Score=31.44 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=29.8
Q ss_pred CcccccccccccCceeeecCCCCCc--cchhHHHHHHhcC--CCCcccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHG--FHVRCIDRWLRSN--SSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~--FH~~Ci~~Wl~~~--~~CP~CR~~l~ 178 (233)
..|++=...+.. .+|-.. |.|. |-..-+.....+. -.||+|...+.
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 569988777654 466666 9998 5544443333333 36999988764
No 161
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=41.48 E-value=13 Score=24.40 Aligned_cols=37 Identities=30% Similarity=0.657 Sum_probs=22.0
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
.|+.|-+.+..++.+.. -+..||..| -.|-.|+..|.
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCC
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCC
Confidence 47777777665554433 366777766 33666666554
No 162
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.13 E-value=17 Score=23.50 Aligned_cols=40 Identities=20% Similarity=0.457 Sum_probs=28.1
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
..|+.|-..+...+.+... -+..||..| -.|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 5799999998875433221 567899877 357788777654
No 163
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=39.99 E-value=26 Score=27.48 Aligned_cols=35 Identities=29% Similarity=0.661 Sum_probs=25.5
Q ss_pred CCCCcccccccccccCceeeecC--CCCCccchhHHHHHHh
Q 026797 127 GLDAECVICLSDFALGERVRLLP--KCNHGFHVRCIDRWLR 165 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~ 165 (233)
+.+..|.||-+. ..+..-. .|...|+..||+.++.
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 456789999753 3344433 5889999999999863
No 164
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=39.50 E-value=12 Score=27.07 Aligned_cols=12 Identities=42% Similarity=1.237 Sum_probs=11.0
Q ss_pred ccchhHHHHHHh
Q 026797 154 GFHVRCIDRWLR 165 (233)
Q Consensus 154 ~FH~~Ci~~Wl~ 165 (233)
.||..|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 799999999985
No 165
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.49 E-value=28 Score=23.12 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=28.6
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
...|+-|-..+. ++.+. .-+..||..| -+|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI---FKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC---CSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEEE---ECcceeCCCC--------CEeCCCCCccCCC
Confidence 468999999887 33332 2678899877 4588888877543
No 166
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=39.25 E-value=12 Score=26.99 Aligned_cols=12 Identities=33% Similarity=1.035 Sum_probs=11.0
Q ss_pred ccchhHHHHHHh
Q 026797 154 GFHVRCIDRWLR 165 (233)
Q Consensus 154 ~FH~~Ci~~Wl~ 165 (233)
.||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 799999999985
No 167
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=38.87 E-value=87 Score=21.03 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=12.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q 026797 52 LDKNVLIVLSVLVCTVICTIVLNFV 76 (233)
Q Consensus 52 ~~~~viiil~ill~~~i~~l~l~~i 76 (233)
+|.-.+-+-+.++.++++++++.++
T Consensus 11 YDY~tLRiGGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 11 YDYQSLQIGGLVIAGILFILGILIV 35 (72)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhhccchHHHHHHHHHHHHHH
Confidence 3444555555555555555544443
No 168
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.82 E-value=24 Score=22.71 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=27.3
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
...|+.|-..+...+.... . -+..||..| -.|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV-A-LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE-C-SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE-E-CCCeEcccC--------CcccccCCcCC
Confidence 3579999988775432222 2 578899877 35888887774
No 169
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=38.81 E-value=9.3 Score=25.58 Aligned_cols=40 Identities=28% Similarity=0.496 Sum_probs=28.5
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
...|+.|-..+..++.+.. -+..||.+|+ +|-.|+..|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCC
Confidence 4679999999877665543 6788998773 47778776643
No 170
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.58 E-value=22 Score=23.63 Aligned_cols=41 Identities=17% Similarity=0.491 Sum_probs=29.3
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
...|+.|-..+..++.+.. .-+..||.+| -+|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE--YKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE--CSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEE--ECcccccccc--------CchhhCCCccCC
Confidence 3689999999886655422 2578999877 358888877654
No 171
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=38.49 E-value=6.6 Score=34.95 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=0.0
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHH
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWL 164 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl 164 (233)
...|.+|...|..-..-.....||++||..|-..++
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 367999999986432212222499999999987764
No 172
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.11 E-value=22 Score=24.32 Aligned_cols=40 Identities=28% Similarity=0.555 Sum_probs=28.6
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
...|+.|-..+...+.+. . -+..||..|+ .|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCCC
Confidence 468999999987766553 2 6789998884 46677666543
No 173
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=37.62 E-value=6.9 Score=25.59 Aligned_cols=44 Identities=30% Similarity=0.631 Sum_probs=26.3
Q ss_pred CCcccccccccccCceeeecCC--CC-CccchhHHHHHH--hcCCCCccccc
Q 026797 129 DAECVICLSDFALGERVRLLPK--CN-HGFHVRCIDRWL--RSNSSCPKCRH 175 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~--C~-H~FH~~Ci~~Wl--~~~~~CP~CR~ 175 (233)
...| ||.... .++ ++.-.. |. .-||..|+..-- ...-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 4567 897753 343 444444 44 799999987210 12235999965
No 174
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.62 E-value=28 Score=22.44 Aligned_cols=40 Identities=23% Similarity=0.542 Sum_probs=28.0
Q ss_pred CCccccccccccc--CceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 129 DAECVICLSDFAL--GERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
...|+.|-..+.. ++.+.. .-+..||.+|+ +|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCcccC--------EeccCCCcCC
Confidence 3579999998875 233322 26789998873 5888888775
No 175
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=36.54 E-value=35 Score=22.77 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=14.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q 026797 52 LDKNVLIVLSVLVCTVICTIVLNFV 76 (233)
Q Consensus 52 ~~~~viiil~ill~~~i~~l~l~~i 76 (233)
+|.-.+-+-+.++.++++++++.++
T Consensus 12 YDY~tLRigGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 12 YDWESLQLGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHheecchhhHHHHHHHHHHHH
Confidence 4444555556666666666555554
No 176
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=36.06 E-value=20 Score=26.06 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=17.8
Q ss_pred cccccccccccCceeeecCCCCCccchhHH
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCI 160 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci 160 (233)
.|+.|-..+...+.+.. .-+..||..|+
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~CF 37 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLECF 37 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTTC
T ss_pred cccCCCCeecCCceEEE--ECCcccccccC
Confidence 68888877765443322 24677887774
No 177
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=35.73 E-value=53 Score=22.08 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 026797 55 NVLIVLSVLVCTVICTIVLNFVIKCALSSLRL 86 (233)
Q Consensus 55 ~viiil~ill~~~i~~l~l~~i~rc~~r~~~~ 86 (233)
..-+|++.+++++.+++++.--++|..+++.+
T Consensus 18 iGGLifA~vLfi~GI~iilS~KckCk~~qk~r 49 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVLSRRCRCKFNQQQR 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCccccCCCCCCC
Confidence 44566777777777777777778887776653
No 178
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=35.60 E-value=8 Score=35.74 Aligned_cols=47 Identities=19% Similarity=0.443 Sum_probs=31.1
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHh-----cCCCCccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLR-----SNSSCPKCRHCL 177 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l 177 (233)
..| ||...+..+...+....|.--||..|+.---. ..-.||.|+...
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 446 99887654444445556999999999854321 234699997643
No 179
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=34.73 E-value=20 Score=26.39 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=28.6
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..|+-|-..+.....+.. -+..||..| -+|-.|+..|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 579999988875443433 678999888 45888988875
No 180
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=34.42 E-value=6.4 Score=24.59 Aligned_cols=41 Identities=27% Similarity=0.585 Sum_probs=25.5
Q ss_pred ccccccccCceeeecCCCCCccchhHHHHHH---hcCCCCccccc
Q 026797 134 ICLSDFALGERVRLLPKCNHGFHVRCIDRWL---RSNSSCPKCRH 175 (233)
Q Consensus 134 ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---~~~~~CP~CR~ 175 (233)
||..... +...+.-..|+.-||..|+..-- .....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544 33344444599999999986432 13346888865
No 181
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=33.91 E-value=27 Score=31.24 Aligned_cols=46 Identities=26% Similarity=0.613 Sum_probs=31.4
Q ss_pred CCCCcccccccccccCceeeecC--CCCCccchhHHHHHHhc----------CCCCcccccc
Q 026797 127 GLDAECVICLSDFALGERVRLLP--KCNHGFHVRCIDRWLRS----------NSSCPKCRHC 176 (233)
Q Consensus 127 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~FH~~Ci~~Wl~~----------~~~CP~CR~~ 176 (233)
+.+..|.+|-+. ..+.... .|...||..||+.++.. .=.|=+|.-.
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 456789999754 2344433 59999999999998721 2258888543
No 182
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=32.48 E-value=21 Score=20.89 Aligned_cols=9 Identities=22% Similarity=0.172 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 026797 57 LIVLSVLVC 65 (233)
Q Consensus 57 iiil~ill~ 65 (233)
.++.+++..
T Consensus 14 ~I~~~vv~G 22 (41)
T 2k9y_A 14 AVIGGVAVG 22 (41)
T ss_dssp HHHHHHHHH
T ss_pred EEEeehhHH
Confidence 334444333
No 183
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.40 E-value=32 Score=22.00 Aligned_cols=40 Identities=20% Similarity=0.521 Sum_probs=27.8
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 180 (233)
...|..|-+.+.. +.+.. -+..||.+|+ +|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCCC
Confidence 4679999988763 33332 5778998874 588888776543
No 184
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=32.22 E-value=20 Score=22.75 Aligned_cols=38 Identities=24% Similarity=0.514 Sum_probs=27.3
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
..|+.|-..+. ++.+. .-+..||..| -.|-.|+..|..
T Consensus 6 ~~C~~C~~~I~-~~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRVVN---AMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCEEC---CTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ceEEE---ECccccccCc--------CEECCCCCCCCC
Confidence 57999998887 44332 2678999877 358888887753
No 185
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.00 E-value=29 Score=22.71 Aligned_cols=38 Identities=26% Similarity=0.660 Sum_probs=27.1
Q ss_pred Cccccccccccc--C-ceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 130 AECVICLSDFAL--G-ERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~--~-~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..|+.|-..+.. + +.+.. -+..||.+| -.|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a---~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF---QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE---TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEE---CCcccCccc--------CChhhCCCcCC
Confidence 579999998874 2 33322 678999988 35788877765
No 186
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=31.88 E-value=83 Score=20.91 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 026797 55 NVLIVLSVLVCTVICTIVLNFVIKCALSSLRL 86 (233)
Q Consensus 55 ~viiil~ill~~~i~~l~l~~i~rc~~r~~~~ 86 (233)
..-+|++.+++++.+++++.--+||...++.+
T Consensus 19 igGLifA~vLfi~GI~iilS~kcrCk~~qk~~ 50 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALALSGKCKCRRNHTPS 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHTCCTT
T ss_pred ecchhhHHHHHHHHHHHHHcCcccccCCCCCC
Confidence 34456666777777777777778887665543
No 187
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=31.51 E-value=64 Score=21.87 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=17.3
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 026797 50 SNLDKNVLIVLSVLVCTVICTIVLNFVI 77 (233)
Q Consensus 50 ~~~~~~viiil~ill~~~i~~l~l~~i~ 77 (233)
-.+|.-.+-+-+.++.++++++++.++.
T Consensus 12 F~YDY~tLRigGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 12 FTYDYYRLRVVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp GCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchHHheeccchhHHHHHHHHHHHHH
Confidence 3455666666666666666666665553
No 188
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=31.11 E-value=1.2e+02 Score=21.59 Aligned_cols=27 Identities=30% Similarity=0.709 Sum_probs=18.0
Q ss_pred CCCCccchhHH---HH---HHhc-----CCCCcccccc
Q 026797 150 KCNHGFHVRCI---DR---WLRS-----NSSCPKCRHC 176 (233)
Q Consensus 150 ~C~H~FH~~Ci---~~---Wl~~-----~~~CP~CR~~ 176 (233)
.|+.-||..|+ +. -+.. ...||.|...
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 49999999995 11 1222 3579999654
No 189
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.31 E-value=27 Score=23.74 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=28.0
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
...|+.|-..+. ++.+.. -+..||..| -.|-.|+..|..
T Consensus 25 ~~~C~~C~~~I~-~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLVA---LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCC-SCEEEE---TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCccCCCEec-ceEEEE---CCccccccC--------CccCCCCCCCCC
Confidence 468999999884 444432 678999877 458888887753
No 190
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.99 E-value=13 Score=24.91 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=14.9
Q ss_pred HHHHhcCCCCcccccccccc
Q 026797 161 DRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 161 ~~Wl~~~~~CP~CR~~l~~~ 180 (233)
+.||..--.||+|+..+...
T Consensus 2 d~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLKLS 21 (69)
T ss_dssp -CCGGGTCCCTTTCCCCEEC
T ss_pred ChHHHhheeCCCCCCcCeEe
Confidence 45677777899999987644
No 191
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.71 E-value=35 Score=22.53 Aligned_cols=37 Identities=19% Similarity=0.418 Sum_probs=26.6
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..|+.|-+.+. +..+. .-+..||.+| -.|-.|...|.
T Consensus 16 ~~C~~C~~~I~-~~~~~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFMV---AGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCCBC---CTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcC-ceEEE---ECCceecccc--------CCccCCCCccC
Confidence 57999998887 33332 2678999877 45888888774
No 192
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=26.98 E-value=39 Score=33.28 Aligned_cols=62 Identities=10% Similarity=0.122 Sum_probs=24.2
Q ss_pred ecCCCCCccchhHHHHHHhcCCCCccccccccccccccccCcccccccccCCCCCCCCcceeeecCC
Q 026797 147 LLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIETCEKIVGCSQQQASSLASSTAPVQETVVISIVPL 213 (233)
Q Consensus 147 ~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~ 213 (233)
++. +.+.+|..|+..| ....||+|++...-.. ...+.. -..+...+..+.....+|+++.--
T Consensus 173 i~~-~~~~~~~~~~~~w--~~~~~~~c~h~~~~~~-~~~~~~-~~~~~~~C~~c~~~~~lw~CL~Cg 234 (854)
T 3ihp_A 173 LLS-ADSASRKQEVQAW--DGEVRQVSKHAFSLKQ-LDNPAR-IPPCGWKCSKCDMRENLWLNLTDG 234 (854)
T ss_dssp HTC-------------------CCCBCTTTTTCCC-CSSCCC-CCSSCCCCSSSCCCSSEEEETTTC
T ss_pred HHh-cCCHHHHHHHHhh--cCccCCCCcCcccccc-cccccc-CCCCCCcCcCcCCcCceEEEecCC
Confidence 344 8899999999999 4456999988632110 000000 011224567788888888887643
No 193
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.75 E-value=17 Score=20.99 Aligned_cols=15 Identities=13% Similarity=0.476 Sum_probs=11.1
Q ss_pred CCcccccccccccCc
Q 026797 129 DAECVICLSDFALGE 143 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~ 143 (233)
.-.|++|+.++...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 367999998876644
No 194
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.63 E-value=40 Score=22.18 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=27.7
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
...|+.|-+.+.. +.+. .-+..||.+|+ +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFVK---LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-SCEE---CSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-cEEE---ECcceeCcCcC--------eeCCCCCCCC
Confidence 4689999998875 3322 26789999884 5888888774
No 195
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=26.28 E-value=53 Score=23.47 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=14.9
Q ss_pred CCCchhhHHHHHHHHHHHHHHH
Q 026797 50 SNLDKNVLIVLSVLVCTVICTI 71 (233)
Q Consensus 50 ~~~~~~viiil~ill~~~i~~l 71 (233)
-.+++.+++++.+++++++++|
T Consensus 66 lKV~P~~VLv~sl~Fi~~Vi~L 87 (96)
T 2wwb_C 66 LKVGPVPVLVMSLLFIASVFML 87 (96)
T ss_dssp CCCSSCSHHHHHHHHHHHHHHH
T ss_pred eEECCEEehhhHHHHHHHHHHH
Confidence 4567777777777776666554
No 196
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.20 E-value=31 Score=26.71 Aligned_cols=46 Identities=20% Similarity=0.445 Sum_probs=30.0
Q ss_pred CCCccccccccccc--CceeeecCCCCCccchhHHHHHHhcCC--CCccccc
Q 026797 128 LDAECVICLSDFAL--GERVRLLPKCNHGFHVRCIDRWLRSNS--SCPKCRH 175 (233)
Q Consensus 128 ~~~~C~ICl~~~~~--~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~CR~ 175 (233)
.+..|.+|...|.- +....- .+|+|.+|..|- .|+.... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C-~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQC-LECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEEC-TTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcC-CCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 46899999998642 233333 359999999996 2433222 3777755
No 197
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=25.93 E-value=17 Score=20.07 Aligned_cols=13 Identities=31% Similarity=0.674 Sum_probs=9.1
Q ss_pred CCCcccccccccc
Q 026797 168 SSCPKCRHCLIET 180 (233)
Q Consensus 168 ~~CP~CR~~l~~~ 180 (233)
..||+|+..+.+.
T Consensus 4 ~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 4 FCCPKCQYQAPDM 16 (28)
T ss_dssp EECTTSSCEESSH
T ss_pred ccCccccccCcCh
Confidence 4699998866543
No 198
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=25.63 E-value=31 Score=26.46 Aligned_cols=39 Identities=23% Similarity=0.605 Sum_probs=23.0
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..|..|-..+..++.+.. .-++.||..|+ .|-.|...|.
T Consensus 66 ~~C~~C~~~I~~~~~v~~--a~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRR--AQDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEEEE--ETTEEEEGGGC--------BCTTTCCBCC
T ss_pred ccccccccccCCCcEEEE--cCCceEeeCCC--------cCCCCCCCCC
Confidence 457777666655443322 15677777774 5667766654
No 199
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.15 E-value=46 Score=23.72 Aligned_cols=10 Identities=20% Similarity=0.581 Sum_probs=4.8
Q ss_pred cccccccccc
Q 026797 131 ECVICLSDFA 140 (233)
Q Consensus 131 ~C~ICl~~~~ 140 (233)
.|+-|-..+.
T Consensus 5 ~C~~C~~~I~ 14 (114)
T 1j2o_A 5 TCGGCQQNIG 14 (114)
T ss_dssp CBSSSCSCBC
T ss_pred CCcCCCCeeC
Confidence 4555544444
No 200
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.99 E-value=38 Score=22.35 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=26.8
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
..|+.|-..+. ++.+.. -+..||.+| -.|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA---LGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE---TTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cceEEE---CCceeCccC--------CccccCCCCCCC
Confidence 57999998877 343332 678999877 347788777653
No 201
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.97 E-value=12 Score=24.92 Aligned_cols=20 Identities=30% Similarity=0.248 Sum_probs=15.4
Q ss_pred HHHHhcCCCCcccccccccc
Q 026797 161 DRWLRSNSSCPKCRHCLIET 180 (233)
Q Consensus 161 ~~Wl~~~~~CP~CR~~l~~~ 180 (233)
+.||..--.||+|+.++...
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 45777777899999987654
No 202
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.49 E-value=49 Score=21.81 Aligned_cols=40 Identities=23% Similarity=0.523 Sum_probs=27.3
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCccccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLIE 179 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 179 (233)
..|+.|-..+..++.+.. .-+..||..| -.|-.|...|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccCC
Confidence 579999998874333322 2578999877 347788877653
No 203
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.14 E-value=1.1e+02 Score=20.85 Aligned_cols=24 Identities=8% Similarity=0.290 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 026797 56 VLIVLSVLVCTVICTIVLNFVIKC 79 (233)
Q Consensus 56 viiil~ill~~~i~~l~l~~i~rc 79 (233)
..++.+++++.+++++++-+++..
T Consensus 15 ~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666655555554443
No 204
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=23.89 E-value=71 Score=23.51 Aligned_cols=21 Identities=24% Similarity=0.630 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 026797 56 VLIVLSVLVCTVICTIVLNFV 76 (233)
Q Consensus 56 viiil~ill~~~i~~l~l~~i 76 (233)
++++++++++++++++++.++
T Consensus 98 ~~iii~~iv~iii~iIi~~~c 118 (119)
T 2kog_A 98 MMIILGVICAIILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhee
No 205
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=23.77 E-value=6.7 Score=26.91 Aligned_cols=14 Identities=21% Similarity=0.736 Sum_probs=12.9
Q ss_pred CCCCccchhHHHHH
Q 026797 150 KCNHGFHVRCIDRW 163 (233)
Q Consensus 150 ~C~H~FH~~Ci~~W 163 (233)
.|+|.|+..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999999888
No 206
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=23.37 E-value=17 Score=33.20 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=31.1
Q ss_pred cccccccccccCceeeecCCCCCccchhHHHHHH-----hcCCCCcccccccc
Q 026797 131 ECVICLSDFALGERVRLLPKCNHGFHVRCIDRWL-----RSNSSCPKCRHCLI 178 (233)
Q Consensus 131 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~l~ 178 (233)
...||...+..+...+....|.--||..|+.--- ...-.||.|+....
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 3448887765444444455699999999984321 13457999976543
No 207
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.37 E-value=55 Score=20.74 Aligned_cols=38 Identities=26% Similarity=0.556 Sum_probs=27.0
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
...|+.|-..+.. +.+. . -+..||.+| -+|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGVT--Y-REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-SEEE--S-SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeecc-ceEE--E-CccccCCCC--------CccCCCCCcCC
Confidence 3579999988864 3332 2 678999877 35888888774
No 208
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.35 E-value=53 Score=20.81 Aligned_cols=38 Identities=21% Similarity=0.570 Sum_probs=26.8
Q ss_pred CCcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 129 DAECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 129 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
...|+.|-..+.. +.+.. -+..||.+|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCC
Confidence 3579999988864 43332 5788998773 5888888774
No 209
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.30 E-value=54 Score=21.28 Aligned_cols=37 Identities=16% Similarity=0.467 Sum_probs=25.9
Q ss_pred CcccccccccccCceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 130 AECVICLSDFALGERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..|+-|-..+.. +.+ ..-+..||.+| -+|-.|...|.
T Consensus 6 ~~C~~C~~~I~~-~~v---~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL---EAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCB---CCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-eeE---EeCCCCCCCCc--------CEeCCCCCCCC
Confidence 579999888764 222 23678999887 35777877765
No 210
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.95 E-value=17 Score=23.47 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=20.6
Q ss_pred CcccccccccccCceeeecC--C--CCCccchhHHHHHH
Q 026797 130 AECVICLSDFALGERVRLLP--K--CNHGFHVRCIDRWL 164 (233)
Q Consensus 130 ~~C~ICl~~~~~~~~~~~lp--~--C~H~FH~~Ci~~Wl 164 (233)
..|+-|...++..+....+. . |++.|+..|...|-
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 57898887776654332222 2 55666666666653
No 211
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=21.64 E-value=1.3e+02 Score=17.43 Aligned_cols=9 Identities=44% Similarity=0.689 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 026797 63 LVCTVICTI 71 (233)
Q Consensus 63 ll~~~i~~l 71 (233)
+++++++.+
T Consensus 11 livalIiaI 19 (36)
T 1pi7_A 11 LVVAIIIAI 19 (36)
T ss_pred HHHHHHHHH
Confidence 333333333
No 212
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.65 E-value=8.4 Score=33.47 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=27.4
Q ss_pred CCCcccccccccccCceeee---cCCCCCccchhHHHHHHhcCCCCcccccc
Q 026797 128 LDAECVICLSDFALGERVRL---LPKCNHGFHVRCIDRWLRSNSSCPKCRHC 176 (233)
Q Consensus 128 ~~~~C~ICl~~~~~~~~~~~---lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 176 (233)
....|++|-..-..+ .++. ..+=.+.+|.-|-..|-..+..||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 357899997764322 1110 00011344555666676677889999664
No 213
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.08 E-value=55 Score=21.19 Aligned_cols=38 Identities=26% Similarity=0.523 Sum_probs=27.2
Q ss_pred Cccccccccccc---C-ceeeecCCCCCccchhHHHHHHhcCCCCcccccccc
Q 026797 130 AECVICLSDFAL---G-ERVRLLPKCNHGFHVRCIDRWLRSNSSCPKCRHCLI 178 (233)
Q Consensus 130 ~~C~ICl~~~~~---~-~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 178 (233)
..|+.|-..+.. + +.+.. -+..||..| -+|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY---EGQSWHDYC--------FHCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE---TTEEEETTT--------CBCSSSCCBCT
T ss_pred ccCcccCCcccCCCCCceeEEE---CcceeCccc--------CEehhcCCCCC
Confidence 679999988874 2 33332 577999877 45888888775
No 214
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.02 E-value=36 Score=21.64 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=8.9
Q ss_pred Cccccccccccc
Q 026797 130 AECVICLSDFAL 141 (233)
Q Consensus 130 ~~C~ICl~~~~~ 141 (233)
-.|++|...+..
T Consensus 11 L~CP~c~~~L~~ 22 (56)
T 2kpi_A 11 LACPACHAPLEE 22 (56)
T ss_dssp CCCSSSCSCEEE
T ss_pred eeCCCCCCccee
Confidence 579999887543
Done!