BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026799
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2T9S3|RPC6_BOVIN DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus
GN=POLR3F PE=2 SV=1
Length = 316
Score = 124 bits (312), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ VS P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVSPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>sp|Q9H1D9|RPC6_HUMAN DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens
GN=POLR3F PE=1 SV=1
Length = 316
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>sp|Q921X6|RPC6_MOUSE DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus
GN=Polr3f PE=1 SV=1
Length = 316
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG + + PCG+CP C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPIL----PPTGVVRA-PCGLCPVFEDCHEGGEISPSNCIYMTEWLEF 316
>sp|Q9VD25|RPC6_DROME Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila
melanogaster GN=CG5380 PE=2 SV=1
Length = 293
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 34/241 (14%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
S P D+ + E+++Y ++ + GIW RD++ + +N+ + K +K+L+ K LIK
Sbjct: 70 SALPKDA-DNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQ--LNKILKNLETKKLIKA 126
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK------------ 116
V ++++ KK M EP I+GGAWY + + EF+ V+ QCL+
Sbjct: 127 VKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKK 186
Query: 117 -----QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE 171
++ T+ + I G KV+L + +E I++ +V D G+ E
Sbjct: 187 REGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYD---------GNAE 237
Query: 172 FTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
G Y+ V+ P TG L +PCG+CP I C G ++ TC Y WL
Sbjct: 238 RVRQQDGSFVYRAVN----APLPPTG-LVQMPCGICPVIKNCSNCGDVTAITCEYMRDWL 292
Query: 232 D 232
D
Sbjct: 293 D 293
>sp|Q86JM3|RPC6_DICDI DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium
discoideum GN=polr3f PE=3 SV=1
Length = 293
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 38/246 (15%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
K P+ A L + LIY +I + + G WTR++K +TK +K+L++
Sbjct: 62 KEVNPEDQAKFRGLGVEDFLIYQLIEASSNTGAWTRELKNS--SGYQQVQITKILKTLES 119
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
+ LIK V +I S KK M EPS+EI+GG YS+ S D ++I+++K +K + K
Sbjct: 120 RKLIKSVKSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMH-IKTFVDNK 178
Query: 123 VAT-LEGISDSIKRSG--AFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEF------- 172
A L I +++ A L + I+ +V ++ D I E++ G
Sbjct: 179 GAVDLADIITYLRKVAEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGAMLGRRSGI 238
Query: 173 ------TNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVY 226
T IPV C ++PCG CP +IC +G++SPK CVY
Sbjct: 239 LYKPTKTPIPVNNFC-------------------NMPCGNCPVFDICSDNGLVSPKRCVY 279
Query: 227 YTKWLD 232
+ ++L+
Sbjct: 280 FKQYLE 285
>sp|O94553|RPC6_SCHPO Probable DNA-directed RNA polymerase III subunit rpc6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc6 PE=2 SV=1
Length = 301
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 116/247 (46%), Gaps = 38/247 (15%)
Query: 6 RPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSL 65
R D ++ E+++Y I++ + GIW + + LR NL ++V + +KSL++K+L
Sbjct: 73 RLDEAKTVSTMEGDEQIVYSFIKNSGNEGIWRKTLT--LRTNLHVSVVDRCLKSLESKNL 130
Query: 66 IKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVA- 124
+K + ++ + +K M + PS E++GG W+++ LD EFI+ +K + +
Sbjct: 131 VKSIKSVKNPTRKIYMLYDLVPSTELTGGPWFTDQELDVEFIENLKKVIYRYVHSKSFPP 190
Query: 125 -------------------TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165
T I + ++ + KVDL+ + +V L+ D ++ E +
Sbjct: 191 KKAAMGPDLVWGPEYNGYPTALQIHNWLRSTNITKVDLSLANVISLVDVLIYDGKV-EKR 249
Query: 166 SNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCV 225
S+G+ Y+ + + T S PCG CP +IC + ++P TC
Sbjct: 250 SDGAS-----------YRAIRVNNENIDAFTES----PCGNCPVSDICDANSRVNPITCE 294
Query: 226 YYTKWLD 232
Y KWL+
Sbjct: 295 YLDKWLN 301
>sp|P91529|RPC6_CAEEL Probable DNA-directed RNA polymerase III subunit RPC6
OS=Caenorhabditis elegans GN=W09C3.4 PE=3 SV=1
Length = 296
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 43/235 (18%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
T+ E++IY +I + GIW ++++ +N + K++KSL+ K LIK + + +
Sbjct: 82 TEEEQVIYSLIEESKTRGIWIKELREGSGLNQLQ--LRKTLKSLETKKLIKTIKAVGTTR 139
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQC------------------LKQI 118
K +++ EP ++GG +YS+ LD+E I + S C ++
Sbjct: 140 KCYIL-FSIEPDMSLTGGTFYSDQQLDSELINTLISVCGSYAASRRKHAIDENPNNIQMQ 198
Query: 119 IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVG 178
+ + I+ I V L+ + +E I+ VLD I + G+ P
Sbjct: 199 REASYIRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTI---ERRADGKIRACP-- 253
Query: 179 KVCYKNVSKGGGGGEPKTG--SLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
P++ L S+PC +CP + C+P VISP++C Y WL
Sbjct: 254 ---------------PRSSISPLVSVPCAICPVVEDCRPGYVISPQSCDYMKNWL 293
>sp|P32910|RPC6_YEAST DNA-directed RNA polymerase III subunit RPC6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC34 PE=1
SV=1
Length = 317
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKF 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS +I+GG W+++G LD EFI
Sbjct: 143 PTRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 175
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 35.4 bits (80), Expect = 0.36, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIH 73
D + E L+YD IR K+ I+ ++ RV L ++K +KSL K I+ + +
Sbjct: 221 DRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALE---LSKKVKSLLTKPEIRALNELA 277
Query: 74 SKGKKHLMAVEFEPSKE-----ISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVAT 125
++E P+ E I GG + L + +V+ K IIK VAT
Sbjct: 278 D-------SLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVAT 327
>sp|O92532|POLG_HCVVP Genome polyprotein OS=Hepatitis C virus genotype 6h (isolate VN004)
PE=1 SV=3
Length = 3015
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 178 GKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
G + Y N+S G +P A PCG+ P N+C P +P V T
Sbjct: 469 GPISYVNIS-GSSEDKPYCWHYAPRPCGIVPARNVCGPVYCFTPSPVVVGT 518
>sp|O35655|PPE1_MOUSE Serine/threonine-protein phosphatase with EF-hands 1 OS=Mus
musculus GN=Ppef1 PE=2 SV=2
Length = 650
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 21/80 (26%)
Query: 142 DLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV-CYKNVSKGGG---GGEPKTG 197
DLTKQ+ E+IV L D P GK CY N S+GGG G + +
Sbjct: 348 DLTKQEWEQIVDILWSD-----------------PRGKKGCYPNTSRGGGCYFGPDVTSK 390
Query: 198 SLASIPCGVCPQINICKPDG 217
L+ + + + CKPDG
Sbjct: 391 VLSKNQLKMLIRSHECKPDG 410
>sp|Q2YUK0|ATPG_STAAB ATP synthase gamma chain OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=atpG PE=3 SV=1
Length = 288
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 27 IRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIH----SKGKKHLMA 82
+S Q + D+ E ++ + + + L+NK ++V+ + SKG HL +
Sbjct: 146 FKSVQALANHAIDLYSEEEIDELNIYYSHYVSVLENKPTSRQVLPLSQEDSSKGHGHLSS 205
Query: 83 VEFEPSKEISGGA---WYSEGSLDTEFIKVVKSQCLKQIIKLKVAT---LEGISD-SIKR 135
EFEP KE Y E + + S+ ++ +K AT E I D S++
Sbjct: 206 YEFEPDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEY 265
Query: 136 SGAFKVDLTKQQIEEIV 152
+ A + ++T QQI EIV
Sbjct: 266 NRARQAEIT-QQITEIV 281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,283,968
Number of Sequences: 539616
Number of extensions: 3643621
Number of successful extensions: 7945
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 7919
Number of HSP's gapped (non-prelim): 40
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)