BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026801
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 60 CNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDG 119
C + ++ HK++ P E +T++++KG ++G ++ F ++G
Sbjct: 20 CTKKMKISHKRLNP--------------DGKSIRNEDKILTIEVKKGWKEGTKITFPKEG 65
Query: 120 EPKIDGEPGDLKFRIRTAPHDRFRREGNNXXXXXXXXXXXXXXGFEKTIEHLDEHLVDIS 179
+ + P D+ F ++ PH+ F+R+G++ G + LD + +
Sbjct: 66 DQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVV 125
Query: 180 TKGITKPKEVRKFGGEGMPL-HFSNKKGDLYITFEVLFPTTLTEDQKTRIKEVL 232
K + +P RK GEG+PL K+GDL I FEV+FP + + +T +++VL
Sbjct: 126 FKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 179
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 60 CNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDG 119
C + ++ HK++ P E +T++++KG ++G ++ F ++G
Sbjct: 29 CTKKMKISHKRLNP--------------DGKSIRNEDKILTIEVKKGWKEGTKITFPKEG 74
Query: 120 EPKIDGEPGDLKFRIRTAPHDRFRREGNNXXXXXXXXXXXXXXGFEKTIEHLDEHLVDIS 179
+ + P D+ F ++ PH+ F+R+G++ G + LD + +
Sbjct: 75 DQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVV 134
Query: 180 TKGITKPKEVRKFGGEGMPL-HFSNKKGDLYITFEVLFPTTLTEDQKTRIKEVL 232
K + +P RK GEG+PL K+GDL I FEV+FP + + +T +++VL
Sbjct: 135 FKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 188
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 60 CNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDG 119
C + ++ HK++ P E +T++++KG ++G ++ F ++G
Sbjct: 22 CTKKMKISHKRLNP--------------DGKSIRNEDKILTIEVKKGWKEGTKITFPKEG 67
Query: 120 EPKIDGEPGDLKFRIRTAPHDRFRREGNNXXXXXXXXXXXXXXGFEKTIEHLDEHLVDIS 179
+ + P D+ F ++ PH+ F+R+G++ G + LD + +
Sbjct: 68 DQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVV 127
Query: 180 TKGITKPKEVRKFGGEGMPL-HFSNKKGDLYITFEVLFPTTLTEDQKTRIKEVL 232
K + +P RK GEG+PL K+GDL I FEV+FP + + +T +++VL
Sbjct: 128 FKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 181
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 30/226 (13%)
Query: 21 KGDDVIVELDATLEDLYMGGSLKVWREKNVI-KPAPGK-------RRCNCRN----EVYH 68
+G D+ E+ A+LE+LY G + K+ K ++ K G+ ++C N +
Sbjct: 10 RGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVT 69
Query: 69 KQIGPGMFQQMTEQV---------------CDQCQNVKYEREGYFVTVDIEKGMQDGQEV 113
+Q+GP M Q+ + C C K E E + V +E GM+DGQ +
Sbjct: 70 RQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRI 128
Query: 114 VFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNXXXXXXXXXXXXXXGFEKTIEHL-- 171
VF + + D PGD+ F + PH F+R+G++ G E +EH+
Sbjct: 129 VFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSG 188
Query: 172 DEHLVDISTKGITKPKEVRKFGGEGMPLHFSNKKGDLYITFEVLFP 217
D V I + P + G+GMP+ G+L I F + P
Sbjct: 189 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDP 234
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 91 KYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDG-EPGDLKFRIRTAPHDRFRREGNNX 149
K E V V+I+ G +DG ++ + +G+ + G PGDL I+T H RF R+ +
Sbjct: 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHL 95
Query: 150 XXXXXXXXXXXXXGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPL-HFSNKKGDL 208
GF + LD + I K I PK + EG P+ + +KGDL
Sbjct: 96 IXKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGXPIKNQPGQKGDL 155
Query: 209 YITFEVLFPTTLTEDQKTRIKEVL 232
+ F++ FP +LT +QK IKE L
Sbjct: 156 ILEFDICFPKSLTPEQKKLIKEAL 179
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 99 VTVDIEKGMQDGQEVVFYEDGE--PKIDGEPGDLKFRIRTAPHDRFRREGNNXXXXXXXX 156
+ + ++ G + G ++ + G+ P+ G L+F I+ H F+R+G++
Sbjct: 38 IDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS 96
Query: 157 XXXXXXGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPL-HFSNKKGDLYITFEVL 215
GF KTI+ +D + +S +P + + G+GMP +++G+L + ++V
Sbjct: 97 FKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVD 156
Query: 216 FPTTLTEDQKTRIKE 230
+P +L + QK I E
Sbjct: 157 YPISLNDAQKRAIDE 171
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 99 VTVDIEKGMQDGQEVVFYEDGE--PKIDGEPGDLKFRIRTAPHDRFRREGNNXXXXXXXX 156
+ + ++ G + G ++ + G+ P+ G L+F I+ H F+R+G++
Sbjct: 38 IDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS 96
Query: 157 XXXXXXGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPL-HFSNKKGDLYITFEVL 215
GF KTI+ +D + +S +P + + G+GMP +++G+L + ++V
Sbjct: 97 FKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVD 156
Query: 216 FPTTLTEDQKTRI 228
+P +L + QK I
Sbjct: 157 YPISLNDAQKRAI 169
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 63/162 (38%), Gaps = 18/162 (11%)
Query: 79 MTEQVCDQCQNVKYEREGYFV------------TVDIEKGMQDGQEVVFYEDGEPKIDGE 126
+ E + +Q + + Y Y V V I G+ DGQ + G P +G
Sbjct: 151 LEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGG 210
Query: 127 P-GDLKFRIRTAPHDRFRREGNNXXXXXXXXXXXXXXGFEKTIEHLDEHLVDISTKGITK 185
P GDL I APH F G+N G + T+ L E ++ G
Sbjct: 211 PNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQA 270
Query: 186 PKEVRKFGGEGMPLHFSNKKGDLYITFEVLFPTTLTEDQKTR 227
+ +R G+G L GDL+ +++ PT D+K R
Sbjct: 271 GQRLR-IKGKG--LVSKTHTGDLFAVIKIVMPT--KPDEKAR 307
>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi
Length = 456
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 56 GKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQN-VKYEREGYFVTVDIEKGMQDGQEVV 114
K + +++HK+I + +M QVC++ N V E + YF T+ + + +
Sbjct: 147 SKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGIN 206
Query: 115 FYEDGEPKIDGEPGDLKFR 133
+ P E D++ +
Sbjct: 207 YGLVAPPATTAETLDVQMK 225
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 141 RFRREGNNXXXXXXXXXXXXXXGFEKTIEHL--DEHLVDISTKGITKPKEVRKFGGEGMP 198
F+R+G++ G E +EH+ D V I + P + G+GMP
Sbjct: 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMP 60
Query: 199 LHFSNKKGDLYITFEVLFPTT--LTEDQKTRIKEVL 232
+ G+L I F + FP +E+ +++E+L
Sbjct: 61 IPKYGGYGNLIIKFTIKFPENHFTSEENLKKLEEIL 96
>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal
Permeability-Increasing Protein
Length = 456
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 56 GKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQN-VKYEREGYFVTVDIEKGMQDGQEVV 114
K + +++HK+I + +M QVC++ N V + + YF T+ + + +
Sbjct: 147 SKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSKLQPYFQTLPVMTKIDSVAGIN 206
Query: 115 FYEDGEPKIDGEPGDLKFR 133
+ P E D++ +
Sbjct: 207 YGLVAPPATTAETLDVQMK 225
>pdb|3F6Q|B Chain B, Crystal Structure Of Integrin-Linked Kinase Ankyrin
Repeat Domain In Complex With Pinch1 Lim1 Domain
Length = 72
Score = 27.7 bits (60), Expect = 5.9, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 34 EDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQ--IGPGMFQQMTEQVCDQCQNVK 91
E+LY GS E+ AP ++ N E+YH+Q + FQQ E + + + K
Sbjct: 2 ENLYFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRK 61
Query: 92 Y 92
Y
Sbjct: 62 Y 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.141 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,402,054
Number of Sequences: 62578
Number of extensions: 309247
Number of successful extensions: 671
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 13
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)