BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026802
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3
PE=1 SV=1
Length = 526
Score = 318 bits (814), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 158/230 (68%), Positives = 183/230 (79%), Gaps = 4/230 (1%)
Query: 2 KEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQV 61
K+V+L+PP+ DLQF RFLKNG LL R IAVT C TLAA+ AA LG+ PMAAFQICLQV
Sbjct: 295 KKVNLIPPNFGDLQFGRFLKNGLLLLARTIAVTFCQTLAAAMAARLGTTPMAAFQICLQV 354
Query: 62 WLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFG 121
WLTSSLL DGLAVAGQAILA +FAEKDY K T A+RVLQMGF+LGLGL++ VGLGLYFG
Sbjct: 355 WLTSSLLNDGLAVAGQAILACSFAEKDYNKVTAVASRVLQMGFVLGLGLSVFVGLGLYFG 414
Query: 122 SGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIA 181
+G+FSKD VIHL+ IGIPF+AATQPINSLAFV DGVNFGASDF Y+AYSMV VA SIA
Sbjct: 415 AGVFSKDPAVIHLMAIGIPFIAATQPINSLAFVLDGVNFGASDFAYTAYSMVGVAAISIA 474
Query: 182 SIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQR 231
++ ++K +GF+GIW+ALTIYM LR G+ RM W+F R R
Sbjct: 475 AVIYMAKTNGFIGIWIALTIYMALRAITGIARMA----TGTGPWRFLRGR 520
>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2
SV=2
Length = 515
Score = 274 bits (701), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 138/214 (64%), Positives = 166/214 (77%)
Query: 1 MKEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQ 60
M +V + S K LQF RF+KNGF LL RVIAVT CVTL+AS AA GS MAAFQ+CLQ
Sbjct: 290 MGQVDIFNMSTKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQ 349
Query: 61 VWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYF 120
VWL +SLLADG AVAGQAILA AFA+KDYK+A A+RVLQ+G +LG LA+++G GL+F
Sbjct: 350 VWLATSLLADGYAVAGQAILASAFAKKDYKRAAATASRVLQLGLVLGFVLAVILGAGLHF 409
Query: 121 GSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASI 180
G+ +F+KD V+HLI IG+PFVA TQPIN+LAFVFDGVNFGASDF Y+A S+V+VAI SI
Sbjct: 410 GARVFTKDDKVLHLISIGLPFVAGTQPINALAFVFDGVNFGASDFGYAAASLVMVAIVSI 469
Query: 181 ASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRM 214
+ LS GF+G+W LTIYM LR G WR+
Sbjct: 470 LCLLFLSSTHGFIGLWFGLTIYMSLRAAVGFWRI 503
>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana
GN=DTX45 PE=2 SV=2
Length = 560
Score = 181 bits (459), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 142/213 (66%)
Query: 2 KEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQV 61
K V LLPP + L+F +LK+G ++L R ++V + +T+A S AA G MAA QIC+QV
Sbjct: 330 KRVILLPPKIGSLKFGDYLKSGGFVLGRTLSVLVTMTVATSMAARQGVFAMAAHQICMQV 389
Query: 62 WLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFG 121
WL SLL D LA +GQA++A + +++D++ T VL++G + G+ LA+V+G+
Sbjct: 390 WLAVSLLTDALASSGQALIASSASKRDFEGVKEVTTFVLKIGVVTGIALAIVLGMSFSSI 449
Query: 122 SGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIA 181
+G+FSKD V+ ++ G+ FVAATQPI +LAF+FDG+++G SDF Y+A SM++V S A
Sbjct: 450 AGLFSKDPEVLRIVRKGVLFVAATQPITALAFIFDGLHYGMSDFPYAACSMMVVGGISSA 509
Query: 182 SIFVLSKASGFVGIWVALTIYMGLRTFAGVWRM 214
+ G G+WV L+++MGLR AG R+
Sbjct: 510 FMLYAPAGLGLSGVWVGLSMFMGLRMVAGFSRL 542
>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana
GN=DTX44 PE=2 SV=1
Length = 521
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 133/215 (61%), Gaps = 4/215 (1%)
Query: 2 KEVHLLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQV 61
+ V LL P +K + +++LK+G L+ R +A+ + TLA S AA G MA QI L++
Sbjct: 291 ENVVLLSPQIKVGRANQYLKSGGLLIGRTVALLVPFTLATSLAAQNGPTQMAGHQIVLEI 350
Query: 62 WLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFG 121
WL SLL D LA+A Q++LA +++ +YK+A VLQ+G G GLA V+ +
Sbjct: 351 WLAVSLLTDALAIAAQSLLATTYSQGEYKQAREVLFGVLQVGLATGTGLAAVLFITFEPF 410
Query: 122 SGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIA 181
S +F+ D V+ + G FVA +QP+N+LAFV DG+ +G SDF ++AYSMV+V I+
Sbjct: 411 SSLFTTDSEVLKIALSGTLFVAGSQPVNALAFVLDGLYYGVSDFGFAAYSMVIVGF--IS 468
Query: 182 SIFVLSKAS--GFVGIWVALTIYMGLRTFAGVWRM 214
S+F+L A G GIW L ++M LR AG WR+
Sbjct: 469 SLFMLVAAPTFGLAGIWTGLFLFMALRLVAGAWRL 503
>sp|P49022|PIP_LACLL Phage infection protein OS=Lactococcus lactis subsp. lactis GN=pip
PE=4 SV=1
Length = 901
Score = 32.0 bits (71), Expect = 4.1, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 44/149 (29%)
Query: 55 FQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLA--L 112
F L +W+ + LL+ A ++KD K+ + +MG + +GLA L
Sbjct: 703 FYTALCLWVGAVLLSS------LATTEVHLSDKDKKRYSKREQFFARMGSFVAIGLAQAL 756
Query: 113 VVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSM 172
+V LG YFG G+ +D PF YS
Sbjct: 757 IVTLGNYFGLGVDVRD-----------PF-------------------------YSVLFA 780
Query: 173 VLVAIASIASIFVLSKASGFVGIWVALTI 201
+L++IA + ++VL G VG +A+ I
Sbjct: 781 LLISIAFMIMVYVLVALFGNVGKGIAIII 809
>sp|Q6NYN7|S22A6_DANRE Solute carrier family 22 member 6 OS=Danio rerio GN=slc22a6 PE=2
SV=1
Length = 560
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 31 IAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSL--LADGLAVAGQAILAGAFAEKD 88
I VTIC+++ R + G++ +A I + + + S L L LAV G+ LA +F
Sbjct: 391 IIVTICMSMLGRRPSQCGALVLAGIMILINLLVPSDLQMLRTSLAVIGKGCLAASFNCCY 450
Query: 89 YKKATLAATRVLQMGF 104
L T + Q G
Sbjct: 451 LYAGELYPTVIRQSGM 466
>sp|A1URV4|RNH2_BARBK Ribonuclease HII OS=Bartonella bacilliformis (strain ATCC 35685 /
KC583) GN=rnhB PE=3 SV=1
Length = 222
Score = 30.8 bits (68), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 63 LTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVG 115
L +L LA++ +I A A + D +KATL A R MG + AL+ G
Sbjct: 79 LYCEILQSALAISIASICARAIDQSDIRKATLEAMRRCVMGLAVPAHYALIDG 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.141 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,812,162
Number of Sequences: 539616
Number of extensions: 2839044
Number of successful extensions: 11452
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 11422
Number of HSP's gapped (non-prelim): 81
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)