Query 026802
Match_columns 233
No_of_seqs 109 out of 1494
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 12:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.2E-34 2.6E-39 257.0 27.5 216 9-230 233-450 (455)
2 PRK10189 MATE family multidrug 100.0 8.9E-34 1.9E-38 253.1 28.3 212 11-228 253-467 (478)
3 PRK00187 multidrug efflux prot 100.0 3E-32 6.5E-37 242.6 26.2 207 10-216 229-443 (464)
4 COG0534 NorM Na+-driven multid 100.0 5E-32 1.1E-36 240.2 26.7 212 6-218 7-222 (455)
5 PRK09575 vmrA multidrug efflux 100.0 6E-31 1.3E-35 233.7 26.5 207 10-216 227-435 (453)
6 PRK01766 multidrug efflux prot 100.0 7E-31 1.5E-35 233.4 26.7 207 10-216 232-441 (456)
7 PRK10367 DNA-damage-inducible 100.0 1.9E-30 4E-35 229.7 27.7 205 12-216 4-211 (441)
8 PRK00187 multidrug efflux prot 100.0 1.6E-30 3.5E-35 231.6 27.2 205 11-216 4-214 (464)
9 PRK10189 MATE family multidrug 100.0 2E-30 4.2E-35 231.6 26.9 202 14-215 26-235 (478)
10 PRK10367 DNA-damage-inducible 100.0 8.1E-29 1.8E-33 219.2 26.0 197 14-216 229-430 (441)
11 PRK09575 vmrA multidrug efflux 100.0 9.2E-29 2E-33 219.7 26.4 205 12-216 7-214 (453)
12 PRK01766 multidrug efflux prot 100.0 2.7E-27 5.8E-32 210.4 27.1 205 12-216 7-217 (456)
13 PF01554 MatE: MatE; InterPro 99.9 7.2E-26 1.6E-30 173.8 6.5 161 25-185 1-162 (162)
14 TIGR00797 matE putative efflux 99.9 2.4E-22 5.1E-27 171.8 25.0 192 25-216 1-196 (342)
15 TIGR01695 mviN integral membra 99.9 5.3E-22 1.1E-26 178.1 26.5 207 11-217 217-428 (502)
16 TIGR02900 spore_V_B stage V sp 99.9 3.9E-19 8.4E-24 159.0 26.5 203 11-217 219-434 (488)
17 PRK15099 O-antigen translocase 99.8 1.2E-17 2.7E-22 146.9 25.3 204 8-216 206-411 (416)
18 KOG1347 Uncharacterized membra 99.8 2.6E-19 5.7E-24 158.8 8.1 211 13-229 243-458 (473)
19 PF03023 MVIN: MviN-like prote 99.8 1.8E-15 3.8E-20 134.5 27.0 208 11-218 192-404 (451)
20 TIGR01695 mviN integral membra 99.7 2.8E-15 6.1E-20 134.6 24.9 195 19-216 2-206 (502)
21 KOG1347 Uncharacterized membra 99.7 3.8E-16 8.3E-21 138.7 18.7 203 13-216 24-229 (473)
22 TIGR00797 matE putative efflux 99.7 7E-16 1.5E-20 131.9 18.1 134 9-142 208-341 (342)
23 TIGR02900 spore_V_B stage V sp 99.7 7.4E-15 1.6E-19 131.4 22.9 193 20-216 2-203 (488)
24 COG0728 MviN Uncharacterized m 99.6 5.3E-13 1.1E-17 118.8 26.7 207 11-217 226-437 (518)
25 PRK15099 O-antigen translocase 99.6 4.7E-14 1E-18 124.2 19.9 191 19-216 3-196 (416)
26 PRK10459 colanic acid exporter 99.6 6.4E-13 1.4E-17 119.3 25.4 202 11-216 201-404 (492)
27 COG2244 RfbX Membrane protein 99.6 1.1E-12 2.5E-17 117.2 23.6 185 13-199 209-394 (480)
28 PF03023 MVIN: MviN-like prote 99.3 1.1E-09 2.4E-14 97.5 22.1 172 45-217 3-182 (451)
29 PF01943 Polysacc_synt: Polysa 98.7 1.7E-05 3.6E-10 65.0 23.5 188 20-218 2-192 (273)
30 COG0728 MviN Uncharacterized m 98.7 2.4E-05 5.2E-10 70.3 24.7 208 18-225 8-224 (518)
31 PRK10459 colanic acid exporter 98.6 7.9E-06 1.7E-10 73.5 20.8 184 17-214 5-191 (492)
32 PF14667 Polysacc_synt_C: Poly 98.6 7.8E-07 1.7E-11 66.7 9.9 83 139-221 2-84 (146)
33 PF13440 Polysacc_synt_3: Poly 98.5 0.0001 2.2E-09 59.8 21.9 167 36-216 3-172 (251)
34 PF04506 Rft-1: Rft protein; 98.2 0.00013 2.8E-09 66.5 16.7 205 16-220 252-473 (549)
35 PF07260 ANKH: Progressive ank 98.1 0.0018 3.9E-08 54.4 21.0 157 12-174 6-167 (345)
36 COG2244 RfbX Membrane protein 98.1 0.00064 1.4E-08 60.9 19.4 151 14-175 3-156 (480)
37 KOG2864 Nuclear division RFT1 97.5 0.014 3E-07 51.4 16.5 173 48-220 273-452 (530)
38 PF01943 Polysacc_synt: Polysa 97.3 0.002 4.3E-08 52.6 9.8 74 10-83 198-272 (273)
39 PF13440 Polysacc_synt_3: Poly 96.0 0.095 2.1E-06 42.2 10.1 67 16-82 182-250 (251)
40 COG4267 Predicted membrane pro 72.3 69 0.0015 28.3 13.2 117 87-207 317-436 (467)
41 PF04505 Dispanin: Interferon- 70.3 29 0.00064 23.2 6.9 44 70-114 34-77 (82)
42 PRK13629 threonine/serine tran 53.7 1.7E+02 0.0037 26.4 13.6 65 66-130 218-292 (443)
43 COG4267 Predicted membrane pro 52.1 1.7E+02 0.0037 25.9 21.1 136 67-216 75-210 (467)
44 COG4536 CorB Putative Mg2+ and 51.1 1.8E+02 0.0038 25.7 9.6 96 23-128 60-156 (423)
45 COG4662 TupA ABC-type tungstat 49.7 1.3E+02 0.0028 23.9 7.8 42 118-159 8-49 (227)
46 PF14936 p53-inducible11: Tumo 45.3 1.4E+02 0.0031 23.0 9.3 53 77-129 32-86 (179)
47 PRK09546 zntB zinc transporter 44.5 88 0.0019 26.6 6.6 48 168-216 263-320 (324)
48 COG0170 SEC59 Dolichol kinase 43.2 41 0.00089 27.0 4.1 24 64-87 117-140 (216)
49 TIGR00383 corA magnesium Mg(2+ 42.1 1.1E+02 0.0025 25.6 7.0 14 203-216 301-314 (318)
50 PF14248 DUF4345: Domain of un 42.0 1.3E+02 0.0028 21.6 13.2 119 93-216 1-123 (124)
51 PF05975 EcsB: Bacterial ABC t 40.8 2.5E+02 0.0054 24.6 14.5 37 87-123 88-124 (386)
52 PF04235 DUF418: Protein of un 37.7 1.7E+02 0.0038 21.8 15.7 28 88-115 9-36 (163)
53 PRK10739 putative antibiotic t 37.2 2.1E+02 0.0045 22.6 10.6 69 65-139 11-79 (197)
54 TIGR01301 GPH_sucrose GPH fami 36.6 3.3E+02 0.0072 24.7 10.9 36 16-51 3-38 (477)
55 PF01914 MarC: MarC family int 35.8 2.2E+02 0.0048 22.5 10.5 69 65-139 11-79 (203)
56 PRK11085 magnesium/nickel/coba 31.5 2.3E+02 0.0051 24.2 7.1 49 167-216 254-312 (316)
57 PF10507 DUF2453: Protein of u 31.4 2E+02 0.0043 20.6 8.9 42 33-74 19-60 (111)
58 PF07260 ANKH: Progressive ank 29.0 3.6E+02 0.0079 23.3 7.6 37 12-48 230-267 (345)
59 PF01654 Bac_Ubq_Cox: Bacteria 27.6 4.6E+02 0.0099 23.6 8.6 49 68-116 17-69 (436)
60 PF13347 MFS_2: MFS/sugar tran 26.8 4.3E+02 0.0092 23.0 17.0 18 73-90 156-173 (428)
61 COG0598 CorA Mg2+ and Co2+ tra 26.5 4E+02 0.0087 22.6 9.5 49 167-216 260-318 (322)
62 COG1738 yhhQ Uncharacterized m 25.9 3.7E+02 0.0079 22.0 7.2 77 73-155 65-141 (233)
63 PRK09855 PTS system N-acetylga 25.9 3.9E+02 0.0084 22.2 12.5 86 64-171 26-114 (263)
64 PF12250 AftA_N: Arabinofurano 25.8 4.5E+02 0.0098 23.5 7.8 127 15-153 199-325 (429)
65 PRK10207 dipeptide/tripeptide 24.3 5.3E+02 0.012 23.3 12.2 22 107-128 465-486 (489)
66 PTZ00370 STEVOR; Provisional 22.0 1.4E+02 0.003 25.2 3.8 21 205-228 269-289 (296)
67 PF01148 CTP_transf_1: Cytidyl 21.8 4.2E+02 0.009 21.1 7.8 26 62-87 131-156 (259)
68 KOG2468 Dolichol kinase [Lipid 21.3 55 0.0012 29.4 1.5 43 64-106 413-455 (510)
69 PF02687 FtsX: FtsX-like perme 20.9 2.8E+02 0.006 18.8 6.0 44 80-123 32-75 (121)
70 TIGR00427 membrane protein, Ma 20.3 4.4E+02 0.0095 20.8 10.3 68 66-139 15-82 (201)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.2e-34 Score=257.01 Aligned_cols=216 Identities=22% Similarity=0.298 Sum_probs=208.1
Q ss_pred CCCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCC
Q 026802 9 PSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKD 88 (233)
Q Consensus 9 ~~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~ 88 (233)
+++|++.+|+++++|.|.+++++++..++.+.+.+++++|++++|||+++.++.++.+++..|+++|+++++||++||||
T Consensus 233 ~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~ 312 (455)
T COG0534 233 LKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGN 312 (455)
T ss_pred cCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHH
Q 026802 89 YKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYS 168 (233)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 168 (233)
+|++|++.+.+..++..++++.+.+.+++++++.++|++|||+.+.+.+++++.+..+++++.+.+..|++||.||++.+
T Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~ 392 (455)
T COG0534 313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIP 392 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhhh
Q 026802 169 AYSM-VLVAIASIASIFVLSKA-SGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQ 230 (233)
Q Consensus 169 ~~~~-~~~~~~~i~l~~~~~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 230 (233)
+++. +..|.+++|+.+++... +|..|+|+++..++.++.+...+++++ .+|++.+.
T Consensus 393 ~~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 450 (455)
T COG0534 393 FIISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRR------GRWRRKAV 450 (455)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhhh
Confidence 9995 56889999999999776 999999999999999999999999999 88877644
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=8.9e-34 Score=253.09 Aligned_cols=212 Identities=17% Similarity=0.192 Sum_probs=203.1
Q ss_pred CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHH
Q 026802 11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYK 90 (233)
Q Consensus 11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~ 90 (233)
.|++.+|+++++|+|.+++++....+..+.+.+++++|++++|||+++.+++++.+++..|+++|+++++||++|+||+|
T Consensus 253 ~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~ 332 (478)
T PRK10189 253 LNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIA 332 (478)
T ss_pred CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802 91 KATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY 170 (233)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 170 (233)
++|+..+.+..+++.++++++++.+++++++.++|++|+|+.+.+..++++.++.+++++.+++..+.+||.||++.+++
T Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhh
Q 026802 171 SM-VLVAIASIASIFVLS--KASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFG 228 (233)
Q Consensus 171 ~~-~~~~~~~i~l~~~~~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 228 (233)
+. ...|++.+|+.|++. .++|+.|+|++..+++.++.+..++|+++ ++|++.
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~------~~W~~~ 467 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVS------GRWLWK 467 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHc------CccccC
Confidence 94 678899999998873 57999999999999999999999999999 888773
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=3e-32 Score=242.62 Aligned_cols=207 Identities=18% Similarity=0.121 Sum_probs=195.1
Q ss_pred CCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCH
Q 026802 10 SLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDY 89 (233)
Q Consensus 10 ~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~ 89 (233)
+.+++.+|+++++|+|.+++++.+...+.+++.+++++|++++||++++.++..+.+.+..|+++|+++++||++|+||+
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC--CH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCc
Q 026802 90 KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSK--DV---NVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASD 164 (233)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~---~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~ 164 (233)
|+++++.+.++.+++.++++++++.+++++++.++|++ || |+.+.+..|+++.+++.++.+++.+..+++||.||
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 99999999999999999999999999999999999974 44 78999999999999999999999999999999999
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 165 FVYSAYSMV-LVAIASIASIFVLS--KASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 165 ~~~~~~~~~-~~~~~~i~l~~~~~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
++.++++.+ ..|++++|+.|++. +++|+.|+|+++.+++++..+..+.++++
T Consensus 389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999965 56799999999884 57999999999999999999888888766
No 4
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=5e-32 Score=240.24 Aligned_cols=212 Identities=19% Similarity=0.179 Sum_probs=201.3
Q ss_pred cCCCCCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhh
Q 026802 6 LLPPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFA 85 (233)
Q Consensus 6 ~~~~~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~G 85 (233)
..+.+ +++..|+++++++|++++++.+.+.+.+|+.++||+|++++||.+++.++..+.+.+..|++.|++++++|++|
T Consensus 7 ~~~~~-~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~G 85 (455)
T COG0534 7 LLEGP-FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIG 85 (455)
T ss_pred hhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 33344 56689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCch
Q 026802 86 EKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDF 165 (233)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~ 165 (233)
+||++++|+..++++.++..++++.+++.+.++++++.+++.++|+.+.+.+|+++..++.|+..+.++.++++|+.||+
T Consensus 86 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~ 165 (455)
T COG0534 86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDT 165 (455)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc---c-CChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026802 166 VYSAYSMVLVAIASIASIFVLSK---A-SGFVGIWVALTIYMGLRTFAGVWRMRDVY 218 (233)
Q Consensus 166 ~~~~~~~~~~~~~~i~l~~~~~~---~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 218 (233)
+.++++++.+.++|+.+++++.+ + +|+.|+++|+.+++.+..+....++++++
T Consensus 166 ~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 166 KTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998843 4 99999999999999999998888887744
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=6e-31 Score=233.70 Aligned_cols=207 Identities=14% Similarity=0.155 Sum_probs=195.8
Q ss_pred CCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCC
Q 026802 10 SLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGS-IPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKD 88 (233)
Q Consensus 10 ~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~-~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~ 88 (233)
++|++.+|+++++|.|..+++..+.....+.+.+++++|+ +++|+++++.++.++++.+..|+++|+++++||++|+||
T Consensus 227 ~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~ 306 (453)
T PRK09575 227 RFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQ 306 (453)
T ss_pred CcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCC
Confidence 4678889999999999999999999999999999999996 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC-CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHH
Q 026802 89 YKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSK-DVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVY 167 (233)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~-~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~ 167 (233)
+||+|+..+.++.+++..+++.+++++.+++++..+|++ |||+.+.+.+|+++.++++++++++.+..+++||.||++.
T Consensus 307 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~ 386 (453)
T PRK09575 307 YDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGK 386 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 999999999999999999999999999999999999995 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 168 SAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 168 ~~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
++..++..+++++|+.+++...+|+.|+|+++.+++.+..+...+++++
T Consensus 387 ~~~~~~~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 387 ALFISIGNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999878888899999988766899999999999999998877776665
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=7e-31 Score=233.36 Aligned_cols=207 Identities=19% Similarity=0.151 Sum_probs=197.7
Q ss_pred CCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCH
Q 026802 10 SLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDY 89 (233)
Q Consensus 10 ~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~ 89 (233)
+.+++.+|+++++++|.+++++.+...+.+++.+++++|++++||++++.++.++.+.+..|++.|.++++||++|+||+
T Consensus 232 ~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~ 311 (456)
T PRK01766 232 KPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRT 311 (456)
T ss_pred CCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHH
Q 026802 90 KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSA 169 (233)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 169 (233)
+++|+..+.++.+++.++++++.+.+.+++++.++|++|||+.+.+..|+++.+++.++.+++.+..+++||.||++.++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 391 (456)
T PRK01766 312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF 391 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHH--hccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 170 YSMVL-VAIASIASIFVL--SKASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 170 ~~~~~-~~~~~i~l~~~~--~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
.+.+. .|++++|+.+++ .+++|+.|+|+++.+++.++.+..++++++
T Consensus 392 ~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 392 FITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 99654 668999998887 357999999999999999999999999888
No 7
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.9e-30 Score=229.67 Aligned_cols=205 Identities=14% Similarity=0.050 Sum_probs=193.0
Q ss_pred CcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHH
Q 026802 12 KDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYK 90 (233)
Q Consensus 12 ~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~ 90 (233)
-.++.|++++++.|.+++++.+.....+|+.+++++ |++++||++++.++.++.+.+..|++.++++++||++|+||+|
T Consensus 4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 356799999999999999999999999999999999 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802 91 KATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY 170 (233)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 170 (233)
+++++.++++.++..+++++..+...+.+++..+++.|||+.+.+.+|+++.+++.|+..+..+.++++||.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999998888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 171 SMVLVAIASIASIFVLS--KASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 171 ~~~~~~~~~i~l~~~~~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
..+.+.++|+++++++. +++|+.|+|+++.+++.+..+...+++++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988999999999874 47999999999999999998877666654
No 8
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=1.6e-30 Score=231.55 Aligned_cols=205 Identities=16% Similarity=0.081 Sum_probs=191.1
Q ss_pred CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHH
Q 026802 11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYK 90 (233)
Q Consensus 11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~ 90 (233)
+|++++|+++++++|.+++++++.+...+|+.+++++|++++||++++.++.+++..+..|++.|+++++||++|+||+|
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802 91 KATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY 170 (233)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 170 (233)
+++++.+.++.++.+++++..++.+ +.++++.+|+.|||+.+.+.+|+++.+++.|+..+.+..++++||.||++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999998777766 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc------cCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 171 SMVLVAIASIASIFVLSK------ASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 171 ~~~~~~~~~i~l~~~~~~------~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
.++...++|++++|++.+ ++|+.|+|+++.+++....+...+++++
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~ 214 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRR 214 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988743 4899999999999888777666555543
No 9
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2e-30 Score=231.61 Aligned_cols=202 Identities=16% Similarity=0.147 Sum_probs=190.8
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHHHH
Q 026802 14 LQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKAT 93 (233)
Q Consensus 14 ~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~ 93 (233)
+.+|+++++++|.+++++++.....+|+.+++++|++++||++++.++.++.+.+..|+++|+++++||++|+||+|+++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~ 105 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRAR 105 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc--CCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHH
Q 026802 94 LAATRVLQMGFILGLGLALVVGLGLYFGSGIFS--KDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYS 171 (233)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~ 171 (233)
++.+.++.+++.++++.+++.+++++++..+|+ .|||+.+.+.+|+++..++.|+..+..+.++++||.||++.++.+
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i 185 (478)
T PRK10189 106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLI 185 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHH
Confidence 999999999999999999999999999999995 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh------ccCChHHHHHHHHHHHHHHHHHHHHHHh
Q 026802 172 MVLVAIASIASIFVLS------KASGFVGIWVALTIYMGLRTFAGVWRMR 215 (233)
Q Consensus 172 ~~~~~~~~i~l~~~~~------~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 215 (233)
.+..+.+|+++++.+. +++|+.|+|+++.+++.+..+...+++.
T Consensus 186 ~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 186 NGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999988773 3789999999999999999877665554
No 10
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.97 E-value=8.1e-29 Score=219.23 Aligned_cols=197 Identities=19% Similarity=0.197 Sum_probs=175.1
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHHHH
Q 026802 14 LQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKAT 93 (233)
Q Consensus 14 ~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~ 93 (233)
+.+|+++++|.|.++++..+..++.+.+.+++++|++++|||+++.+++++.+++..|+++|+++++||++|+||+|++|
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~ 308 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLL 308 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHhhcCchHHHH
Q 026802 94 LAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAF----VFDGVNFGASDFVYSA 169 (233)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~----~~~~~l~g~g~~~~~~ 169 (233)
+..+.+..++.+++.+++++++.+++++.++|++|||+.+.+.+++++.+...+...... +..|.+||. ||+.++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~-dt~~~~ 387 (441)
T PRK10367 309 DVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA-EMRNSM 387 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH-HHHHHH
Confidence 999999999999999999999999999999999999999999999999987644332333 455666665 799999
Q ss_pred HHHHH-HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 170 YSMVL-VAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 170 ~~~~~-~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
.+... .|++.+ ..+.+|+.|+|++..+++.++.+...+++++
T Consensus 388 ~~~~~~~~~~~~-----~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~ 430 (441)
T PRK10367 388 AVAAAGFALTLL-----TLPWLGNHGLWLALTVFLALRGLSLAAIWRR 430 (441)
T ss_pred HHHHHHHHHHHH-----HHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98654 443222 2346799999999999999999999999888
No 11
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.97 E-value=9.2e-29 Score=219.71 Aligned_cols=205 Identities=13% Similarity=0.011 Sum_probs=194.4
Q ss_pred CcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHH
Q 026802 12 KDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYK 90 (233)
Q Consensus 12 ~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~ 90 (233)
+++..|+++++++|.+++++.+.+...+|+.+++++ |++++||++++.++.++...+..+++.|+++++||++|+||+|
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 456789999999999999999999999999999996 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802 91 KATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY 170 (233)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 170 (233)
++++..+.++.++..++++.+++.+.+++++..+|+.|+|+.+.+.+|+++..++.|+..+.+...+++|+.||++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 171 SMVLVAIASIASIFVLS--KASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 171 ~~~~~~~~~i~l~~~~~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
.++.+.++|+++++++. +++|+.|+|+++.+++.+..+...+++++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~ 214 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFS 214 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 98888899999998884 47999999999999999998887776654
No 12
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.96 E-value=2.7e-27 Score=210.39 Aligned_cols=205 Identities=17% Similarity=0.093 Sum_probs=193.8
Q ss_pred CcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHH
Q 026802 12 KDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKK 91 (233)
Q Consensus 12 ~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~ 91 (233)
.++.+|++++++.|.++++++..+...+|+.+++++|++++||++++.++..+...+..|++.+.++++||++|+||+|+
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~ 86 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRER 86 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 46679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHH
Q 026802 92 ATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYS 171 (233)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~ 171 (233)
+++..+.++.++..+++++.++.+.+++++..+|+.|||+.+.+.+|+++.+++.|+..+..+.++++||.||++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (456)
T PRK01766 87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI 166 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh------ccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 172 MVLVAIASIASIFVLS------KASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 172 ~~~~~~~~i~l~~~~~------~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
.+...++|+++++++. +.+|+.|+|+++.+++.+..+...++.++
T Consensus 167 ~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~ 217 (456)
T PRK01766 167 GFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKR 217 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888899999988874 46899999999999999998887777665
No 13
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.92 E-value=7.2e-26 Score=173.80 Aligned_cols=161 Identities=24% Similarity=0.313 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHH
Q 026802 25 WLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGF 104 (233)
Q Consensus 25 P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~ 104 (233)
|.+++++.+...+.+++.+++++|++++|+++++.++.++...+..|+++|.++++||++|+||+||++++.+.++.++.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHH-HHHHHHHHH
Q 026802 105 ILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVL-VAIASIASI 183 (233)
Q Consensus 105 ~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~-~~~~~i~l~ 183 (233)
.++++++++..++++++..+|++|+|+.+.+.+|+++..+..|+..+.+..++++||.||++.+++..+. .|++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 160 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLA 160 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999665 559999998
Q ss_pred HH
Q 026802 184 FV 185 (233)
Q Consensus 184 ~~ 185 (233)
|+
T Consensus 161 yl 162 (162)
T PF01554_consen 161 YL 162 (162)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 14
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.91 E-value=2.4e-22 Score=171.85 Aligned_cols=192 Identities=20% Similarity=0.212 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHH
Q 026802 25 WLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGF 104 (233)
Q Consensus 25 P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~ 104 (233)
|.++++.+..+...+++.+++++|++++++++++.++.++...+..|++++..+.++|++|++|+|++++..+.+..+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH
Q 026802 105 ILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIF 184 (233)
Q Consensus 105 ~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~i~l~~ 184 (233)
.++++.+++.+++++++..+|+.|+|..+.+.+++++.+++.++..++....+++|+.||++.++...+...+++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~ 160 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY 160 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999998899999999999999999999999999999999999999999998888888888877
Q ss_pred HHhc---c-CChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 185 VLSK---A-SGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 185 ~~~~---~-~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
.+.. + +|+.|+++++.+++.+..+...+++++
T Consensus 161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6643 4 679999999999999998887777665
No 15
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.91 E-value=5.3e-22 Score=178.14 Aligned_cols=207 Identities=12% Similarity=0.028 Sum_probs=192.7
Q ss_pred CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhHHhhcCCH
Q 026802 11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSL-LADGLAVAGQAILAGAFAEKDY 89 (233)
Q Consensus 11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~-~~~g~~~a~~~~i~~~~Ga~~~ 89 (233)
.+++..|++++.+.|..+++........+|+.+.+.+|++++++++.+.++.++... +..+++.+..|.++|++|+||+
T Consensus 217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~ 296 (502)
T TIGR01695 217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW 296 (502)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 467889999999999999999999999999998888899999999999999988765 6789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC----CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCch
Q 026802 90 KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSK----DVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDF 165 (233)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~ 165 (233)
+++|+..+++......++++.+..+..+++++..+|.. |+|..+.+..++.+.+++.++..++....+.+++.||+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~ 376 (502)
T TIGR01695 297 NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDT 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Confidence 99999999999999999999999999999999998865 67888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026802 166 VYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDV 217 (233)
Q Consensus 166 ~~~~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 217 (233)
+.++.......++++++++++.+.+|..|+|+++.+++.+..+...++++|+
T Consensus 377 ~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 377 RTPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888889999999998889999999999999999999888888774
No 16
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.86 E-value=3.9e-19 Score=158.98 Aligned_cols=203 Identities=13% Similarity=0.126 Sum_probs=178.0
Q ss_pred CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc----Cc---hHHHHH----HHHHHHHHHHHHhHHHHHHHHHHH
Q 026802 11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL----GS---IPMAAF----QICLQVWLTSSLLADGLAVAGQAI 79 (233)
Q Consensus 11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l----g~---~~lAa~----~i~~~~~~~~~~~~~g~~~a~~~~ 79 (233)
.|++.+|++++.+.|..++++.......+|+.++++. |. ++.+.+ +++.++.++...+..+++.+..|.
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPD 298 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999998764 32 222333 344566677777889999999999
Q ss_pred HhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 026802 80 LAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVN 159 (233)
Q Consensus 80 i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l 159 (233)
++|+.|+||+|+.++..++...++..++++.++.+..+++++..+|.++++ +..++.+.++..++..++...++++
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876554 5678999999999999999999999
Q ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026802 160 FGASDFVYSAYSMVLVAIASIASIFVLS--KASGFVGIWVALTIYMGLRTFAGVWRMRDV 217 (233)
Q Consensus 160 ~g~g~~~~~~~~~~~~~~~~i~l~~~~~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 217 (233)
++.||++.+++..+...++++++++++. +.+|..|+|+++.+++.+..+...++.+|.
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888899999998876 889999999999999999999988888774
No 17
>PRK15099 O-antigen translocase; Provisional
Probab=99.82 E-value=1.2e-17 Score=146.86 Aligned_cols=204 Identities=10% Similarity=-0.011 Sum_probs=175.0
Q ss_pred CCCCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHhHHhh
Q 026802 8 PPSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAA-TLGSIPMAAFQICLQVWLT-SSLLADGLAVAGQAILAGAFA 85 (233)
Q Consensus 8 ~~~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~-~lg~~~lAa~~i~~~~~~~-~~~~~~g~~~a~~~~i~~~~G 85 (233)
+.+.|++.+|++++.|.|..+++....+....++.+++ ++|++++++|+++.++.+. ...+..+++++..|.++|+
T Consensus 206 ~~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~-- 283 (416)
T PRK15099 206 KPSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL-- 283 (416)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 34578888999999999999999999999999999996 8899999999999999774 5789999999999999995
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCch
Q 026802 86 EKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDF 165 (233)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~ 165 (233)
+|+||.++..++.......++++.+...+++++++..+|..|+ .+.+.+++++.+++.++...+......+-..+++
T Consensus 284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~ 360 (416)
T PRK15099 284 -TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASL 360 (416)
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999888899999999998765 2225667788777777776666666656666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 166 VYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 166 ~~~~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
+......+....+++|+++++.+.+|..|++++..+++.+.++.......+
T Consensus 361 ~~~~~~~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 361 RFYILAEVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778888999999999999999999999999999998877665554
No 18
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.78 E-value=2.6e-19 Score=158.83 Aligned_cols=211 Identities=17% Similarity=0.192 Sum_probs=196.7
Q ss_pred cHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHH
Q 026802 13 DLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGS--IPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYK 90 (233)
Q Consensus 13 ~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~--~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~ 90 (233)
.+.++++++.++|.+++...+...+.+.....|.+++ .++++.+++.++....++...|++.|+++++++.+|+||++
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 6779999999999999999999999999999999985 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802 91 KATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY 170 (233)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 170 (233)
++|..+..+...++..++..+..++..++.+..+|++|+|+.+...+..++.+...+.+..+.+.+|+.||.|..+...+
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~ 402 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAV 402 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHH-HHHHHHHHHHHHH--hccCChHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhh
Q 026802 171 SMV-LVAIASIASIFVL--SKASGFVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQWKFGR 229 (233)
Q Consensus 171 ~~~-~~~~~~i~l~~~~--~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 229 (233)
+.+ ...++.+|...++ ..++|+.|+|.++..+..+..........+ .+|++.-
T Consensus 403 vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~------tdW~~~~ 458 (473)
T KOG1347|consen 403 INLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTAR------TDWKNQA 458 (473)
T ss_pred EeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheee------ccHHHHH
Confidence 865 4567888887776 468999999999999977788888888787 8888763
No 19
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.75 E-value=1.8e-15 Score=134.55 Aligned_cols=208 Identities=15% Similarity=0.126 Sum_probs=193.1
Q ss_pred CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhHHhhcCCH
Q 026802 11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSS-LLADGLAVAGQAILAGAFAEKDY 89 (233)
Q Consensus 11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~-~~~~g~~~a~~~~i~~~~Ga~~~ 89 (233)
.+.++.|++++...|..+.....+....++..+.+.+++-++++.+-+.++.++-. .+..++++..-|..++..-+||.
T Consensus 192 ~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~ 271 (451)
T PF03023_consen 192 WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDW 271 (451)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 44567999999999999999999999999999999999999999999999999866 57789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc---C-CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCch
Q 026802 90 KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFS---K-DVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDF 165 (233)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~---~-~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~ 165 (233)
++.++..++++.....+.++..+.+..++++++.+.- + |+|-.+...+.+.+.+++.|+.+++.++...+-+.+|+
T Consensus 272 ~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~ 351 (451)
T PF03023_consen 272 EEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDT 351 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCc
Confidence 9999999999999999999999999999999888773 1 66667888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026802 166 VYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVY 218 (233)
Q Consensus 166 ~~~~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 218 (233)
+.++...+.+.++++.+++++.+.+|..|+.+++.++..+..+..+++++|+.
T Consensus 352 ~~~~~~~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 352 KTPVRISVISVVLNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999998888743
No 20
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.73 E-value=2.8e-15 Score=134.63 Aligned_cols=195 Identities=17% Similarity=0.090 Sum_probs=157.5
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHh-cCchHH-HHHHHHHHHHHHHHHhHH--HHHHHHHHHHhHHhhcCCH-HHHH
Q 026802 19 FLKNGFWLLTRVIAVTICVTLAASRAAT-LGSIPM-AAFQICLQVWLTSSLLAD--GLAVAGQAILAGAFAEKDY-KKAT 93 (233)
Q Consensus 19 ~l~~g~P~~~~~~~~~~~~~~~~~~~~~-lg~~~l-Aa~~i~~~~~~~~~~~~~--g~~~a~~~~i~~~~Ga~~~-~~~~ 93 (233)
++|-..=.++.++......+++..++++ +|++++ ++++++.++.+.+..+.. |++++ .+++..|+++. |+++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a---~i~~~~~~~~~~~~~~ 78 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSA---FVPVFTKAKKKEKEAR 78 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHhhhhHHH
Confidence 4566667788899999999999999998 799999 799999999888766544 45555 55555555554 5888
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccc--cCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802 94 LAATRVLQMGFIL-GLGLALVVGLGLYFGSGIF--SKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY 170 (233)
Q Consensus 94 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~lf--~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 170 (233)
+....+....... ++++..+.+++++++..++ +.|+|..+.+.+|+++.+++.|+..+..+.++++|+.||.+.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (502)
T TIGR01695 79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSF 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHH
Confidence 7777766655544 4455677788899999988 457888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCChHHHH--HHHHHHHHHHHHHHHHHHhh
Q 026802 171 SMVLVAIASIASIFVLSKASGFVGIW--VALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 171 ~~~~~~~~~i~l~~~~~~~~g~~G~~--~a~~~~~~~~~~~~~~~~~~ 216 (233)
..+...++++...+++.+++|..|+. +++.+++.+..+..++++++
T Consensus 159 ~~i~~~i~~i~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~ 206 (502)
T TIGR01695 159 SPILFNIGVILSLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK 206 (502)
T ss_pred HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97777677776666667889999988 99999999888877776655
No 21
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.73 E-value=3.8e-16 Score=138.74 Aligned_cols=203 Identities=12% Similarity=0.037 Sum_probs=190.1
Q ss_pred cHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHhHHhhcCCHHH
Q 026802 13 DLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTS-SLLADGLAVAGQAILAGAFAEKDYKK 91 (233)
Q Consensus 13 ~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~-~~~~~g~~~a~~~~i~~~~Ga~~~~~ 91 (233)
.++.|++.+++.|..+..+.+.....+.+.++||+|+.++|+.+++.++.+.+ +.+..|+..+..|+.+|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 47789999999999999999999999999999999999999999999999985 66999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHH
Q 026802 92 ATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYS 171 (233)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~ 171 (233)
...+..++..+-...++.+..+.. +.+++...+++||++...+..|.++..+..+.......+.-.+|+++++....++
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 999999999999999999888777 5699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH--hccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 172 MVLVAIASIASIFVL--SKASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 172 ~~~~~~~~i~l~~~~--~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
.....++++++.|++ .+++|..|+..+..+++........+|...
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence 999999999999988 568999999999999999888877777654
No 22
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.71 E-value=7e-16 Score=131.86 Aligned_cols=134 Identities=32% Similarity=0.345 Sum_probs=128.0
Q ss_pred CCCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCC
Q 026802 9 PSLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKD 88 (233)
Q Consensus 9 ~~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~ 88 (233)
.+.+++..|++++.|.|..++++.......+++.+++++|++++++++++.++.++...+..+++++..+.++|++|+||
T Consensus 208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 287 (342)
T TIGR00797 208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGD 287 (342)
T ss_pred cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHH
Q 026802 89 YKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFV 142 (233)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~ 142 (233)
.|+.++..+++....+.++++.....+.+++++.++|++|||+.+.+..++++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 288 PKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998764
No 23
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.69 E-value=7.4e-15 Score=131.40 Aligned_cols=193 Identities=20% Similarity=0.213 Sum_probs=163.5
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhHHhhcCCHHHHHHHHH
Q 026802 20 LKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLLA-DGLAVAGQAILAGAFAEKDYKKATLAAT 97 (233)
Q Consensus 20 l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~~-~g~~~a~~~~i~~~~Ga~~~~~~~~~~~ 97 (233)
.+.+.|.++.+........+++.+++|+ |+++.++++.+.++.+++..+. .|++.+....++|+.|++|++++++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 4678999999999999999999999985 9999999999999998887765 5999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q 026802 98 RVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAI 177 (233)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~ 177 (233)
.+..+....+++++++.+.+.+.+...+.+|++.. .++++.++..++..+..+.++++||.+|.+..+...+...+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSL----YSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 99999999999999999889999988777776543 46778888999999999999999999999999988777666
Q ss_pred HHHHHHHHH-------hccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 178 ASIASIFVL-------SKASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 178 ~~i~l~~~~-------~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
+++.+...+ ..+.++.|..++..+++.+..+..++++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~ 203 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKR 203 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665443222 224567788888888888888877666554
No 24
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.63 E-value=5.3e-13 Score=118.79 Aligned_cols=207 Identities=14% Similarity=0.073 Sum_probs=190.7
Q ss_pred CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhHHhhcCCH
Q 026802 11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSS-LLADGLAVAGQAILAGAFAEKDY 89 (233)
Q Consensus 11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~-~~~~g~~~a~~~~i~~~~Ga~~~ 89 (233)
+|.+..|++++...|..+.....++...+++.+.+.+.+-+++...-+.++.++=. .+..++++..-+..+++..++|.
T Consensus 226 ~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~ 305 (518)
T COG0728 226 FKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDW 305 (518)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 55578999999999999999999999999999999999999999999999999954 79999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccC----CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCch
Q 026802 90 KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSK----DVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDF 165 (233)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~ 165 (233)
++.++..+.++.++..+.++.+..++.+++++..+.-. +++-.....+.+..++.+.++..+.-++.-.+-+.+|+
T Consensus 306 ~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ 385 (518)
T COG0728 306 PEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDT 385 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999987622 45556778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026802 166 VYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDV 217 (233)
Q Consensus 166 ~~~~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 217 (233)
|.|+.+.+.+.++|+.++..+.+.+|..|++.+..++..+.....++.++|+
T Consensus 386 ktP~~i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 386 KTPMKIAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred CcChHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998888899999999999988888887777777764
No 25
>PRK15099 O-antigen translocase; Provisional
Probab=99.63 E-value=4.7e-14 Score=124.15 Aligned_cols=191 Identities=16% Similarity=0.080 Sum_probs=155.8
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhHHhhcCCHHHHHHHH
Q 026802 19 FLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLL-ADGLAVAGQAILAGAFAEKDYKKATLAA 96 (233)
Q Consensus 19 ~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~-~~g~~~a~~~~i~~~~Ga~~~~~~~~~~ 96 (233)
+.|........+........+.....+|+ |+++.+..+...++..++..+ ..|++++.+..++|+ ++|+|+++++.
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 45666677777888887777777666655 999999999999988877665 888889989999998 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHH
Q 026802 97 TRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVA 176 (233)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~ 176 (233)
+.++.+....+++++++.+++.+++...+.+|||. ..++.+..+..+...+.+...+++||.||++.++...+.+.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998878777753 24555556666667888899999999999999998888888
Q ss_pred HHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 177 IASIASIFVLS-KASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 177 ~~~i~l~~~~~-~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
++++.+ +++. ...|+.|+.+++.+++.+..+...+++++
T Consensus 157 ~~~i~l-~i~~~~~~Gv~Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 157 LIGVAA-YYLCYRLGGYEGALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred HHHHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888776 3333 23499999999999999987766655544
No 26
>PRK10459 colanic acid exporter; Provisional
Probab=99.61 E-value=6.4e-13 Score=119.28 Aligned_cols=202 Identities=11% Similarity=0.089 Sum_probs=171.6
Q ss_pred CCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhHHhhcCC
Q 026802 11 LKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSL-LADGLAVAGQAILAGAFAEKD 88 (233)
Q Consensus 11 ~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~-~~~g~~~a~~~~i~~~~Ga~~ 88 (233)
.|++..|++++.+.|...++........+|..+++++ |+++++.|+.+.++.+.... +...++...-|..++. ++|
T Consensus 201 ~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~ 278 (492)
T PRK10459 201 FSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDD 278 (492)
T ss_pred ecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCC
Confidence 5677899999999999999999999999999998876 89999999999998876443 4444666677778775 678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHH
Q 026802 89 YKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYS 168 (233)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 168 (233)
.++.++..++.......+++++.+.+.+..+++..++-.|+ .+.+...+.+.++...+..+......++++.||++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~ 356 (492)
T PRK10459 279 TEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLS 356 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh
Confidence 89999999999999999999888888888888776654433 3557788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 169 AYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 169 ~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
+...+....+.+|..+.+...+|..|+.+++.+++.+......++.++
T Consensus 357 ~~~~~~~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 357 FKWNVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888899988888888899999999999999888888877744
No 27
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.57 E-value=1.1e-12 Score=117.24 Aligned_cols=185 Identities=13% Similarity=0.061 Sum_probs=170.9
Q ss_pred cHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHH
Q 026802 13 DLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKK 91 (233)
Q Consensus 13 ~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~ 91 (233)
++..+++++.+.|..+.+........+|+.+++++ |+++++-|+.+.++......+...++...-|.+++...+||.++
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~ 288 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKA 288 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 68899999999999999999999999999998877 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHH
Q 026802 92 ATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYS 171 (233)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~ 171 (233)
.++..+++......++++..+....+.+++..++..++... +...+.+.++..++..+.......+++.|+++..+..
T Consensus 289 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~--~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 366 (480)
T COG2244 289 LKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYAS--AAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLI 366 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHH
Confidence 99999999999999999999999999988888775544322 7778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCChHHHHHHH
Q 026802 172 MVLVAIASIASIFVLSKASGFVGIWVAL 199 (233)
Q Consensus 172 ~~~~~~~~i~l~~~~~~~~g~~G~~~a~ 199 (233)
......+++.+++.+.+..|..|...+.
T Consensus 367 ~~~~~i~~~~l~~~li~~~g~~g~~~a~ 394 (480)
T COG2244 367 SLISALLNLILNLLLIPRFGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHhHHHHhhhhhhHHHHH
Confidence 9888899999999999999999998888
No 28
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.29 E-value=1.1e-09 Score=97.50 Aligned_cols=172 Identities=19% Similarity=0.143 Sum_probs=149.1
Q ss_pred HhcCc-hHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026802 45 ATLGS-IPMAAFQICLQVWLTSSLLA--DGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFG 121 (233)
Q Consensus 45 ~~lg~-~~lAa~~i~~~~~~~~~~~~--~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 121 (233)
..+|+ .+..|+.++.++-++..... .+++++.-|...+.. ++++|++++..+..........++++++..++++++
T Consensus 3 ~~fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~i 81 (451)
T PF03023_consen 3 YFFGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPI 81 (451)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45675 55669999999999998644 358899999999999 999999999999999999999999999999999999
Q ss_pred hccccC--CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCC---hHHHH
Q 026802 122 SGIFSK--DVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASG---FVGIW 196 (233)
Q Consensus 122 ~~lf~~--~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~i~l~~~~~~~~g---~~G~~ 196 (233)
..++.. |+|..+.+.+++++..+..++.++..+..+++++.+|-..+....+...+..+...+++....| +.++.
T Consensus 82 v~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~~~~~~i~~la 161 (451)
T PF03023_consen 82 VRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNSWGQENIYALA 161 (451)
T ss_pred HHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 999854 7899999999999999999999999999999999999999988877666666665556666677 88899
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 026802 197 VALTIYMGLRTFAGVWRMRDV 217 (233)
Q Consensus 197 ~a~~~~~~~~~~~~~~~~~~~ 217 (233)
++..++...+.+......++.
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~ 182 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRF 182 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 999999999998888887773
No 29
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.73 E-value=1.7e-05 Score=65.03 Aligned_cols=188 Identities=21% Similarity=0.256 Sum_probs=121.7
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhHHhhcCCHHHHHHHHH
Q 026802 20 LKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLL-ADGLAVAGQAILAGAFAEKDYKKATLAAT 97 (233)
Q Consensus 20 l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~-~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~ 97 (233)
+|...-....+.......++...++.|. |+++..-++...++.+++..+ -.|+.++..-.++++..+ .++.+.+..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3455566677777777777777776655 999999999999999887764 788888877777766555 344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q 026802 98 RVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAI 177 (233)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~ 177 (233)
.........++++........ .+.+ ++.... +........+.........+++++.++.+......+...+
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS-----FFGN-PSLSLI---LIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HcCC-chHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333333222 3333 332221 1222222226778888899999999999988777776666
Q ss_pred HHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026802 178 ASIASIFVL-SKASGFVGIWVALTIYMGLRTFAGVWRMRDVY 218 (233)
Q Consensus 178 ~~i~l~~~~-~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 218 (233)
..+.....+ ..+.+..+...+..++..+..+...++.+++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (273)
T PF01943_consen 151 LSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRRKL 192 (273)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544444 33444888888888888888888887777643
No 30
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.69 E-value=2.4e-05 Score=70.30 Aligned_cols=208 Identities=15% Similarity=0.068 Sum_probs=155.1
Q ss_pred HHHhhcHHHHHHHH-HHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHhHHhhcCCHHHHH
Q 026802 18 RFLKNGFWLLTRVI-AVTICVTLAASRAATLGS-IPMAAFQICLQVWLTSSLLA--DGLAVAGQAILAGAFAEKDYKKAT 93 (233)
Q Consensus 18 ~~l~~g~P~~~~~~-~~~~~~~~~~~~~~~lg~-~~lAa~~i~~~~~~~~~~~~--~g~~~a~~~~i~~~~Ga~~~~~~~ 93 (233)
+++|-+.-.+...+ +...+..=++.+...+|+ ....|+.++.++=|++--.. ..++++--|.-.++..++..|+++
T Consensus 8 sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~ 87 (518)
T COG0728 8 SLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAAR 87 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHH
Confidence 33333333333333 445566666777778897 77789999999999986644 345799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-ccccC--CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802 94 LAATRVLQMGFILGLGLALVVGLGLYFGS-GIFSK--DVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY 170 (233)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~lf~~--~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 170 (233)
+..+...-....+.++..++..++.+.+. .+++. |++....+....++..+..++.++.....++++..++-..+.+
T Consensus 88 ~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~ 167 (518)
T COG0728 88 FFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAF 167 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhh
Confidence 99988887777777888888888899998 55554 3555557889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhc-cCC-hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 026802 171 SMVLVAIASIASIFVLSK-ASG-FVGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQW 225 (233)
Q Consensus 171 ~~~~~~~~~i~l~~~~~~-~~g-~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~w 225 (233)
.-+...+..|....++.+ ..+ ..+..+++.++-+++.++.+..++|.......+|
T Consensus 168 aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~ 224 (518)
T COG0728 168 APVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRF 224 (518)
T ss_pred hHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCC
Confidence 865555555533333322 233 5566778889999999999998888543333444
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=98.65 E-value=7.9e-06 Score=73.50 Aligned_cols=184 Identities=10% Similarity=0.038 Sum_probs=128.0
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhHHhhcCCHHHHHH
Q 026802 17 SRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSL-LADGLAVAGQAILAGAFAEKDYKKATL 94 (233)
Q Consensus 17 ~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~-~~~g~~~a~~~~i~~~~Ga~~~~~~~~ 94 (233)
++..+-+....+.+.......++....++|+ |+++...++....+..++.. .-.|++++. .|. .+.+. +
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~-~~~~~----~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR-QDISH----L 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc-ccCCH----H
Confidence 5677778888888888888888887777766 99999999999998888765 445776654 221 11122 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHH
Q 026802 95 AATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVL 174 (233)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~ 174 (233)
.......+....++++.++.+++.+++...|. +|+. ...+.+.++..++..+.....+.+++..+.+........
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 33445556666677777777777888877664 4443 345677777777788888899999999999877766555
Q ss_pred HHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHHHHHHH
Q 026802 175 VAIASIASIFVL-SKASGFVGIWVALTIYMGLRTFAGVWRM 214 (233)
Q Consensus 175 ~~~~~i~l~~~~-~~~~g~~G~~~a~~~~~~~~~~~~~~~~ 214 (233)
..+........+ ..+.|..+..++..+++.+..+......
T Consensus 151 ~~i~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~ 191 (492)
T PRK10459 151 AVVAGFTFAVVSAFFWPGALAAILGYLVNSSVRTLLFGYFG 191 (492)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544444443333 4578888888888888877766554433
No 32
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.56 E-value=7.8e-07 Score=66.72 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=76.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026802 139 IPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRDVY 218 (233)
Q Consensus 139 l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 218 (233)
+.+.+++.++..+....+.++++.||++..+...+....+++++++.+.+.+|..|+.+++.+++........++.+|+.
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~~ 81 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVRKKI 81 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999888865
Q ss_pred ccc
Q 026802 219 DKS 221 (233)
Q Consensus 219 ~~~ 221 (233)
+.+
T Consensus 82 ~~~ 84 (146)
T PF14667_consen 82 GIK 84 (146)
T ss_pred CCC
Confidence 444
No 33
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.50 E-value=0.0001 Score=59.85 Aligned_cols=167 Identities=17% Similarity=0.158 Sum_probs=109.5
Q ss_pred HHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026802 36 CVTLAASRAAT-LGSIPMAAFQICLQVWLTSSLL-ADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALV 113 (233)
Q Consensus 36 ~~~~~~~~~~~-lg~~~lAa~~i~~~~~~~~~~~-~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (233)
.+++....++| +|+++.+.++....+..+...+ ..|+...... ..++|+++.++..+.........++++.++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 4999999999999999988775 4555444333 344677777777777776655555554444
Q ss_pred HHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHH-HHHhccCCh
Q 026802 114 VGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASI-FVLSKASGF 192 (233)
Q Consensus 114 ~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~i~l~-~~~~~~~g~ 192 (233)
...... .+ ++++. ..++...+...+...+.....+.+++.+|.+................. .....+.+.
T Consensus 78 ~~~~~~----~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (251)
T PF13440_consen 78 AILIAY----FF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNL 148 (251)
T ss_pred HHHHHH----Hh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 332222 33 34433 234556667778889999999999999999998777665555443322 222334488
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 193 VGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 193 ~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
.+..++..++..+..+..+...++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~ 172 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRR 172 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888888777666654443
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.18 E-value=0.00013 Score=66.49 Aligned_cols=205 Identities=13% Similarity=0.071 Sum_probs=156.5
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHh--c-CchHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHhHHhhcCCH--
Q 026802 16 FSRFLKNGFWLLTRVIAVTICVTLAASRAAT--L-GSIPMAAFQICLQVWLTS-SLLADGLAVAGQAILAGAFAEKDY-- 89 (233)
Q Consensus 16 ~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~--l-g~~~lAa~~i~~~~~~~~-~~~~~g~~~a~~~~i~~~~Ga~~~-- 89 (233)
-++.+++......|.....+...-+-.++.. + ..++.+.|+++.+.-++. -.++..+-.+.-..-++....++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 5888999999999999999988888877777 4 569999999999998886 446667888888888888765433
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Q 026802 90 -------KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGA 162 (233)
Q Consensus 90 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~ 162 (233)
+++.+.....+++...++++...+.....+.++.++..+.=....+.+.++..|...|+.+++.+.+++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3456666667777777776666666666677777764322122224677899999999999999999999999
Q ss_pred CchHHHHHH---HHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 026802 163 SDFVYSAYS---MVLVAIASIASIFVLSK-ASGFVGIWVALTIYMGLRTFAGVWRMRDVYDK 220 (233)
Q Consensus 163 g~~~~~~~~---~~~~~~~~i~l~~~~~~-~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 220 (233)
.+++....- +....++.+...+++.. ++|..|.-+|..+...+|.+..+.++++..++
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~~ 473 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIRRYFRN 473 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998876433 34445666667777755 79999999999999999999998888774443
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.14 E-value=0.0018 Score=54.38 Aligned_cols=157 Identities=10% Similarity=0.091 Sum_probs=111.3
Q ss_pred CcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCC
Q 026802 12 KDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGS---IPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKD 88 (233)
Q Consensus 12 ~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~---~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~ 88 (233)
....++++.+.-+|.+++.....++--+.+..+++-.+ +.+|+++++.++.-++-.+...+-+.+..++.+.
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s~----- 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNSK----- 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcch-----
Confidence 34568999999999999999999999999999988543 4499999999999999999999988877776552
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchH
Q 026802 89 YKKATLAATRVLQMGFILGLGLALVV--GLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFV 166 (233)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~ 166 (233)
.+|-|.+... ...+.+..++...+. -+..--+-.++..||++.+.++..+.++....+++++.....|++-=..++.
T Consensus 81 rsrr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSRRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhhHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 3332222222 222222211111111 1122234456788999999999999999999999999999999998555544
Q ss_pred HHHHHHHH
Q 026802 167 YSAYSMVL 174 (233)
Q Consensus 167 ~~~~~~~~ 174 (233)
.....++.
T Consensus 160 iV~~aSI~ 167 (345)
T PF07260_consen 160 IVGSASIA 167 (345)
T ss_pred EeehHHHH
Confidence 44333443
No 36
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.10 E-value=0.00064 Score=60.90 Aligned_cols=151 Identities=22% Similarity=0.206 Sum_probs=114.8
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhHHhhcCCHHH
Q 026802 14 LQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLLA-DGLAVAGQAILAGAFAEKDYKK 91 (233)
Q Consensus 14 ~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~~-~g~~~a~~~~i~~~~Ga~~~~~ 91 (233)
...++..|...-....+........+.....+|. |+++...++.+.++..++..+. .|+..+..-.++++...++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 3467788888888888888888888877665554 9999999999999999988866 8999999888999988888888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHH
Q 026802 92 ATLA-ATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAY 170 (233)
Q Consensus 92 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 170 (233)
.+.. ...........+.+.........+. +++ ....+.+.....+.........+.+|+.++.+....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI-------DPV----LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLAL 151 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Chh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 7777 6666555555555544444433222 232 344567788888999999999999999999998877
Q ss_pred HHHHH
Q 026802 171 SMVLV 175 (233)
Q Consensus 171 ~~~~~ 175 (233)
..+..
T Consensus 152 ~~~~~ 156 (480)
T COG2244 152 SIVSS 156 (480)
T ss_pred HHHHH
Confidence 74433
No 37
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.014 Score=51.42 Aligned_cols=173 Identities=12% Similarity=0.102 Sum_probs=125.4
Q ss_pred CchHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHhHHhhcCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 026802 48 GSIPMAAFQICLQVWLTS-SLLADGLAVAGQAILAGAFAEKDYKKATLAA---TRVLQMGFILGLGLALVVGLGLYFGSG 123 (233)
Q Consensus 48 g~~~lAa~~i~~~~~~~~-~~~~~g~~~a~~~~i~~~~Ga~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~ 123 (233)
+-.+.+.|.+..+.-++. -.++..+--..-..-+|..-.++.|+.|+.. ...+++...++++........++.++.
T Consensus 273 s~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~ 352 (530)
T KOG2864|consen 273 SFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLL 352 (530)
T ss_pred CcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHH
Confidence 334566777776666554 4466677777788888888776666666544 455555555665555555556667777
Q ss_pred cccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHH---HHHHHHHHHHHHHHHHHhccCChHHHHHHHH
Q 026802 124 IFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSA---YSMVLVAIASIASIFVLSKASGFVGIWVALT 200 (233)
Q Consensus 124 lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~---~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~ 200 (233)
+++.+.=....+...+++.|...|+.+++.+.+++..+.++.+..- ..+....++.+.++|++...+|..|.-.|..
T Consensus 353 lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANi 432 (530)
T KOG2864|consen 353 LYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANI 432 (530)
T ss_pred HHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 7754332233345789999999999999999999999999888664 3345556777788898877788899999999
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 026802 201 IYMGLRTFAGVWRMRDVYDK 220 (233)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~ 220 (233)
+.+.+|.+..+.++++.+++
T Consensus 433 iNm~lRIlys~~fI~~~yr~ 452 (530)
T KOG2864|consen 433 INMSLRILYSLRFIRHYYRD 452 (530)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999888777765444
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.35 E-value=0.002 Score=52.60 Aligned_cols=74 Identities=11% Similarity=0.123 Sum_probs=69.2
Q ss_pred CCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 026802 10 SLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATL-GSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGA 83 (233)
Q Consensus 10 ~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~l-g~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~ 83 (233)
..+++..|++++.+.|..+.++...+....|..+++++ |+++++-|+++.++......+...+.+...|..++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 198 FFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999999999987 899999999999999999999999999999998875
No 39
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=95.97 E-value=0.095 Score=42.20 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=61.4
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhH
Q 026802 16 FSRFLKNGFWLLTRVIAVTICVTLAASRAAT-LGSIPMAAFQICLQVWLTSS-LLADGLAVAGQAILAG 82 (233)
Q Consensus 16 ~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~-lg~~~lAa~~i~~~~~~~~~-~~~~g~~~a~~~~i~~ 82 (233)
.++.++.+.|....++......-.+..+++. +|+++++.++++.++..... .+..++++...|.++|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 182 WRRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3348999999999999999999999999998 89999999999999999887 8999999998888876
No 40
>COG4267 Predicted membrane protein [Function unknown]
Probab=72.26 E-value=69 Score=28.28 Aligned_cols=117 Identities=15% Similarity=0.001 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchH
Q 026802 87 KDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFV 166 (233)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~ 166 (233)
++.++.....++.+.-.+-+-.+.++.+++.++.+..+|+-++-..+.-..-..-......+.++-+ +.-=..+.+
T Consensus 317 ~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~l~lF~vd~lg~s~~i~f~~ll~----i~lyfd~r~ 392 (467)
T COG4267 317 NNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYYLDLFYVDVLGVSCQIVFMSLLN----IFLYFDYRR 392 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhh
Confidence 4556677777888888888888899999999999999998766444332211111111111111111 111122223
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hccCChHHHHHHHHHHHHHHH
Q 026802 167 YSAYSMVLVAIASIASIFVL---SKASGFVGIWVALTIYMGLRT 207 (233)
Q Consensus 167 ~~~~~~~~~~~~~i~l~~~~---~~~~g~~G~~~a~~~~~~~~~ 207 (233)
..+.....-...|-.+.++. .+++-..|.+.|..+.-.++.
T Consensus 393 i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~ 436 (467)
T COG4267 393 IALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLVAF 436 (467)
T ss_pred hhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHHHH
Confidence 33333333445555566655 456666677777655444443
No 41
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=70.30 E-value=29 Score=23.17 Aligned_cols=44 Identities=18% Similarity=0.288 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026802 70 DGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVV 114 (233)
Q Consensus 70 ~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (233)
.-++.--+..+-..+-+||+++|++..+++-.++..- ++++++.
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia-~~~g~~~ 77 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIA-IIIGIVI 77 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence 3344444566777889999999999998888777544 3334443
No 42
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=53.67 E-value=1.7e+02 Score=26.37 Aligned_cols=65 Identities=6% Similarity=0.063 Sum_probs=35.2
Q ss_pred HHhHHHHHHHHHHHHhHH---hh---cCC--HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhhccccCCHH
Q 026802 66 SLLADGLAVAGQAILAGA---FA---EKD--YKKATLAATRVLQMGFILGLGL--ALVVGLGLYFGSGIFSKDVN 130 (233)
Q Consensus 66 ~~~~~g~~~a~~~~i~~~---~G---a~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~lf~~~~~ 130 (233)
..+..++....++++-.. +| .+| .+|+++..+.+..+-+++.++. +...-+.++.+...-.++.+
T Consensus 218 ~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s 292 (443)
T PRK13629 218 MVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIP 292 (443)
T ss_pred HHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCc
Confidence 445666666777776664 55 335 6666666666655555544432 22233355665554444433
No 43
>COG4267 Predicted membrane protein [Function unknown]
Probab=52.06 E-value=1.7e+02 Score=25.94 Aligned_cols=136 Identities=14% Similarity=0.140 Sum_probs=85.5
Q ss_pred HhHHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhh
Q 026802 67 LLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQ 146 (233)
Q Consensus 67 ~~~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~ 146 (233)
.+-.|+....+=.+++.+=++|.++.....-.+..+....+.+++.+.+. ..+|++...-. ..+...
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~--------~~~~~si~yk~-----l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFF--------VNNQYSIVYKI-----LACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhh--------hcCchhHHHHH-----HHHHHH
Confidence 35667778888888999999999998887777777776666666643221 11222221111 112222
Q ss_pred hhhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 147 PINSLAFVFDGVNFGASDFVYSAYSMVLVAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 147 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
......-..-..+.|..|-+....+...+.++.+.+..++ .+++..|.-++..++..........+.++
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~-~~~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLF-LKSPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2233333345567788888877777778888887766554 24588888888888777776554444443
No 44
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=51.07 E-value=1.8e+02 Score=25.74 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=69.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHH-HHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHH
Q 026802 23 GFWLLTRVIAVTICVTLAASR-AATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQ 101 (233)
Q Consensus 23 g~P~~~~~~~~~~~~~~~~~~-~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~ 101 (233)
|.=...+++.-.+...+.+.+ +..+|+..+|-.+.++++..+.+. -+..+.+++-.+||........+.
T Consensus 60 g~iLIGNNLvNilasalaT~~~irl~Gd~GvaIAt~~mT~vilvFa----------EVlPKt~Aa~~perva~~~s~~l~ 129 (423)
T COG4536 60 GTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFA----------EVLPKTIAALYPERVALPSSFILA 129 (423)
T ss_pred eeeeecccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH----------HhcchHHhhhChhhhhhhhhHHHH
Confidence 444556777777777777665 666699888777777776666553 567888999999998877777666
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccCC
Q 026802 102 MGFILGLGLALVVGLGLYFGSGIFSKD 128 (233)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~i~~lf~~~ 128 (233)
..+-+.-++..++=.+...+..+|+-+
T Consensus 130 ~l~~l~~Plv~lln~it~~llrl~gi~ 156 (423)
T COG4536 130 ILVRLFGPLVWLLNAITRRLLRLLGIN 156 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 666666666666666788888888754
No 45
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]
Probab=49.72 E-value=1.3e+02 Score=23.86 Aligned_cols=42 Identities=14% Similarity=-0.054 Sum_probs=27.4
Q ss_pred hhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 026802 118 LYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVN 159 (233)
Q Consensus 118 ~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l 159 (233)
.+.+..++..|||+++....-+.+...+.....+-.+.-++.
T Consensus 8 ~~Al~Ll~~ld~~l~~iv~~tl~vSl~~i~laalv~~pLa~v 49 (227)
T COG4662 8 KQALFLLFSLDPELIGIVATTLYVSLISIFLAALVGVPLAFV 49 (227)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 344555678899999988877777776665554444433333
No 46
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=45.31 E-value=1.4e+02 Score=23.02 Aligned_cols=53 Identities=4% Similarity=-0.231 Sum_probs=28.6
Q ss_pred HHHHhHHhhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCH
Q 026802 77 QAILAGAFAEKDYKKATL--AATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDV 129 (233)
Q Consensus 77 ~~~i~~~~Ga~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~ 129 (233)
-+-|+|.+|.+..=..+. -.+.--.++.+....+++..+.||+.+.+...+.+
T Consensus 32 rSKISQlLGne~k~~vr~P~GLr~Wq~~sa~~f~~~~~m~L~FP~~~~~~vf~~~ 86 (179)
T PF14936_consen 32 RSKISQLLGNEIKFAVREPRGLRLWQFLSAVYFTLVALMALVFPDQLYDHVFEEE 86 (179)
T ss_pred HHHHHHHhcccceeeecCCCchhHHHHHHHHHHHHHHHHHHHccHHHHHhhcccc
Confidence 356888888544222210 11122223444445567777888998877665433
No 47
>PRK09546 zntB zinc transporter; Reviewed
Probab=44.48 E-value=88 Score=26.59 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-hccCCh---------HHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 168 SAYSMVLVAIASIASIFVL-SKASGF---------VGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 168 ~~~~~~~~~~~~i~l~~~~-~~~~g~---------~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
.+....+...+.+|+.++. .++|.+ .|.|+... ..++..+..++++||
T Consensus 263 ~m~~Ltilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~-im~~i~~~~~~~fkr 320 (324)
T PRK09546 263 RTYTMSLMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCL-LLVVLIGGVAWWLKR 320 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHH-HHHHHHHHHHHHHHh
Confidence 3444333335556776654 222221 24443333 344445566677777
No 48
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=43.17 E-value=41 Score=26.99 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=20.3
Q ss_pred HHHHhHHHHHHHHHHHHhHHhhcC
Q 026802 64 TSSLLADGLAVAGQAILAGAFAEK 87 (233)
Q Consensus 64 ~~~~~~~g~~~a~~~~i~~~~Ga~ 87 (233)
.......+++-+.++++|+.+|+.
T Consensus 117 ~~~I~~l~~GD~lAsiiG~~~G~~ 140 (216)
T COG0170 117 IAGILVLALGDGLASIIGKRYGRH 140 (216)
T ss_pred HHHHHHHHHhhHHHHHhCcccCcc
Confidence 345578899999999999999985
No 49
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=42.15 E-value=1.1e+02 Score=25.64 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhh
Q 026802 203 MGLRTFAGVWRMRD 216 (233)
Q Consensus 203 ~~~~~~~~~~~~~~ 216 (233)
.++..+..++++||
T Consensus 301 m~~i~~~~~~~fkr 314 (318)
T TIGR00383 301 MAVIALGPLIYFRR 314 (318)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445567778888
No 50
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=41.96 E-value=1.3e+02 Score=21.57 Aligned_cols=119 Identities=11% Similarity=0.028 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHHH
Q 026802 93 TLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYSM 172 (233)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~ 172 (233)
|+..+..+.++....+.++....+.++.....++..+..-....+..+...-.+...++...... +-..+.+..+...
T Consensus 1 ~~~~~~~l~~~~l~~~~~Gl~~~~~p~~~~~~~~~~~~~~~~~~s~~R~~~G~~~g~Gl~~l~~~--~~~~~~~~al~~l 78 (124)
T PF14248_consen 1 KRILRIFLILSALVFIGIGLAYFLAPSSTAPWFGGVLANAAALDSEFRAYGGLYLGLGLLLLWAA--FKPEYRRPALRLL 78 (124)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCcHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHHHHHHH--ccHhHHHHHHHHH
Confidence 34566777788888888899999889888888865332223344555554444444444444332 2233333332221
Q ss_pred H---H-HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 173 V---L-VAIASIASIFVLSKASGFVGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 173 ~---~-~~~~~i~l~~~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
. . ..+-++ .++. ..+..-...|.++.+ |++......+.+++
T Consensus 79 ~~~~~~~~lgRl-is~~-~dG~p~~~~~~~l~~-Elv~~~l~~~~l~~ 123 (124)
T PF14248_consen 79 ALFIGGGGLGRL-ISLA-LDGPPSPFLWVALIF-ELVLAPLLLWWLRR 123 (124)
T ss_pred HHHHHHHHHHHH-HHHH-HcCCCchHHHHHHHH-HHHHHHHHHHHHHh
Confidence 1 1 122222 2332 344444555555554 44544444444443
No 51
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=40.77 E-value=2.5e+02 Score=24.56 Aligned_cols=37 Identities=24% Similarity=0.106 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 026802 87 KDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSG 123 (233)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 123 (233)
.++++.+++.+++...+.....+...+.....-|+..
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477899999999999999987776666655555544
No 52
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=37.66 E-value=1.7e+02 Score=21.83 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026802 88 DYKKATLAATRVLQMGFILGLGLALVVG 115 (233)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (233)
|.++-++..++....++.++++......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777666665555
No 53
>PRK10739 putative antibiotic transporter; Provisional
Probab=37.15 E-value=2.1e+02 Score=22.62 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=43.3
Q ss_pred HHHhHHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHH
Q 026802 65 SSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGI 139 (233)
Q Consensus 65 ~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l 139 (233)
++.+.+-+++. +..-..-...++++-|+.++++...+..+ .++..+.++.+.+.|+-+-+..+.+...+
T Consensus 11 Lf~iinPig~i--piflslt~~~~~~~r~~ia~~a~~~a~~i----ll~f~~~G~~iL~~fGIsl~afrIAGGil 79 (197)
T PRK10739 11 LILIMDPLGNL--PIFMSVLKHLEPKRRRAIMIRELLIALLV----MLVFLFAGEKILAFLNLRTETVSISGGII 79 (197)
T ss_pred HHHHHhHhhHH--HHHHHHhCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34455555544 44444455556666677777765544433 44566789999999998877777666443
No 54
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=36.55 E-value=3.3e+02 Score=24.74 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=26.3
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchH
Q 026802 16 FSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIP 51 (233)
Q Consensus 16 ~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~ 51 (233)
.++++.++.-...-|+.+.+...........+|.+.
T Consensus 3 ~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~ 38 (477)
T TIGR01301 3 LRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPH 38 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 356677777777778888888888877777777644
No 55
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=35.83 E-value=2.2e+02 Score=22.51 Aligned_cols=69 Identities=12% Similarity=0.020 Sum_probs=41.1
Q ss_pred HHHhHHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHH
Q 026802 65 SSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGI 139 (233)
Q Consensus 65 ~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l 139 (233)
++.+.+-+++. +..-..-...+.++-|+.++++...++ +...+..++++.+++.|+-+-+..+.+...+
T Consensus 11 lf~iinP~g~i--p~f~~lt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fgIsl~af~IaGGii 79 (203)
T PF01914_consen 11 LFAIINPIGNI--PIFLSLTKGMSPKERRRIARRASIIAF----IILLIFAFFGQLILNFFGISLPAFRIAGGII 79 (203)
T ss_pred HHHHHhHHHHH--HHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34444555444 334444445555555666666544443 3344566789999999998877777666443
No 56
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=31.50 E-value=2.3e+02 Score=24.17 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hccCCh---------HHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 167 YSAYSMVLVAIASIASIFVL-SKASGF---------VGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 167 ~~~~~~~~~~~~~i~l~~~~-~~~~g~---------~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
-.+....+..++..|+.++. .++|.+ .|.|++..+ .++..+..+++++|
T Consensus 254 ~~mk~lTv~s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~-~~~~~~~~~~~f~r 312 (316)
T PRK11085 254 RIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIIL-MILAGLAPYLYFKR 312 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34455333445555665554 233222 344444433 33444456777777
No 57
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=31.36 E-value=2e+02 Score=20.58 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHH
Q 026802 33 VTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAV 74 (233)
Q Consensus 33 ~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~ 74 (233)
...+-.++..+-..+|-..+||.++++.+....-....+.-.
T Consensus 19 I~AGd~Id~~lg~~~giStmAAAalGN~vSDv~Gi~~~~~vE 60 (111)
T PF10507_consen 19 IIAGDYIDNTLGVTFGISTMAAAALGNLVSDVAGIGLGGYVE 60 (111)
T ss_pred HHcchHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence 344557777777888999999999999888876544444433
No 58
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=29.04 E-value=3.6e+02 Score=23.30 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=33.3
Q ss_pred CcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHh-cC
Q 026802 12 KDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAAT-LG 48 (233)
Q Consensus 12 ~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~-lg 48 (233)
|...++++++...|.+..+..+-.+-.+.+.+++| +|
T Consensus 230 ~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~ 267 (345)
T PF07260_consen 230 DSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLS 267 (345)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34569999999999999999999999999999999 54
No 59
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=27.57 E-value=4.6e+02 Score=23.60 Aligned_cols=49 Identities=10% Similarity=0.205 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHhHHh----hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026802 68 LADGLAVAGQAILAGAF----AEKDYKKATLAATRVLQMGFILGLGLALVVGL 116 (233)
Q Consensus 68 ~~~g~~~a~~~~i~~~~----Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (233)
+..+++.+.-..+.+.. |..++++..+-..+.+.+.+.++++.+.+..+
T Consensus 17 v~~tiGl~~~~~i~e~~~~rt~d~~y~~lar~w~k~~~i~fa~GvvtG~~~~f 69 (436)
T PF01654_consen 17 VPLTIGLALLLAILETLYYRTGDPRYDRLARFWGKLFAINFAVGVVTGTVMEF 69 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 55556666666666777778888887777754
No 60
>PF13347 MFS_2: MFS/sugar transport protein
Probab=26.80 E-value=4.3e+02 Score=23.00 Aligned_cols=18 Identities=28% Similarity=0.154 Sum_probs=9.8
Q ss_pred HHHHHHHHhHHhhcCCHH
Q 026802 73 AVAGQAILAGAFAEKDYK 90 (233)
Q Consensus 73 ~~a~~~~i~~~~Ga~~~~ 90 (233)
.....+.+-+..|+++..
T Consensus 156 ~~~~~~~l~~~~g~~~~~ 173 (428)
T PF13347_consen 156 ASFLAPILVSWFGGGDTS 173 (428)
T ss_pred HHHHhhhhhhhhccCccc
Confidence 334444444667777654
No 61
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=26.48 E-value=4e+02 Score=22.60 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hccCCh---------HHHHHHHHHHHHHHHHHHHHHHhh
Q 026802 167 YSAYSMVLVAIASIASIFVL-SKASGF---------VGIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 167 ~~~~~~~~~~~~~i~l~~~~-~~~~g~---------~G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
..+....+..++..|+.++. .++|.+ .|.|++..+ .++..+..+++++|
T Consensus 260 ~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~-m~~~~~~~~~~frr 318 (322)
T COG0598 260 EIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALIL-MLLLALLLYLYFRR 318 (322)
T ss_pred HHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHH-HHHHHHHHHHHHHh
Confidence 44455444445566666655 222221 255655544 34445566777777
No 62
>COG1738 yhhQ Uncharacterized member of the PurR regulon [General function prediction only]
Probab=25.94 E-value=3.7e+02 Score=21.95 Aligned_cols=77 Identities=9% Similarity=0.003 Sum_probs=42.0
Q ss_pred HHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHH
Q 026802 73 AVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLA 152 (233)
Q Consensus 73 ~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~ 152 (233)
.-.++=+..+.+|.+ ++|+.+..++....+.+++....+. +++ ......+++..+.-....++...+.....+.
T Consensus 65 ~Fl~tD~~~e~yG~~---~Ark~V~~gf~~~lv~~~l~~~~~~-~~~--~~~~~~~~a~~~~f~~~~RI~lASl~Ayivs 138 (233)
T COG1738 65 IFLATDLTVEIYGKK---EARKAVFLGFFSALVFSILTQIALH-FPP--SGSDEAQEALAALFSFVPRIALASLLAYIVS 138 (233)
T ss_pred HHHHHHHHHHHhCHH---HHHHHHHHHHHHHHHHHHHHHHHHh-CCC--CcchhhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 334445677777754 4555666666666666555444444 222 2222334444455455667777776666665
Q ss_pred HHH
Q 026802 153 FVF 155 (233)
Q Consensus 153 ~~~ 155 (233)
...
T Consensus 139 Q~~ 141 (233)
T COG1738 139 QLL 141 (233)
T ss_pred HHH
Confidence 554
No 63
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=25.93 E-value=3.9e+02 Score=22.24 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=51.9
Q ss_pred HHHHhHHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHH
Q 026802 64 TSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGF---ILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIP 140 (233)
Q Consensus 64 ~~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~ 140 (233)
.=-+-..|++.+..|.+-+.++.++.++.+..-|+.-.... ..+++.++.+. .-|. ..|+|.+
T Consensus 26 yErmq~~gf~~~m~P~L~KlY~~~~e~~~~Al~rHl~ffNT~p~~~~~I~Gi~~a-mEE~-----~~~~~~I-------- 91 (263)
T PRK09855 26 YERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDNLEFINTHPNLVGFLMGLLIS-MEEK-----GENRDTI-------- 91 (263)
T ss_pred HHHHhhHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCchhhhHHHHHHHH-Hhhc-----cCCHHHH--------
Confidence 33445678889999999999977666666666666543321 22334444444 2333 1244443
Q ss_pred HHHHhhhhhHHHHHHHHHHhhcCchHHHHHH
Q 026802 141 FVAATQPINSLAFVFDGVNFGASDFVYSAYS 171 (233)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~ 171 (233)
..+...+-|-+.|.||+-+....
T Consensus 92 --------~~iKtaLMGPlAGIGDSlf~gt~ 114 (263)
T PRK09855 92 --------KGLKVALFGPIAGIGDAIFWFTL 114 (263)
T ss_pred --------HHHHHHHhccchhchhHHHHHHH
Confidence 34555666778899999866444
No 64
>PF12250 AftA_N: Arabinofuranosyltransferase N terminal; InterPro: IPR020963 The arabinofuranosyltransferase enzyme AftA is involved in cell wall arabinan biosynthesis in bacteria []. It catalyses the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. As this enzyme is important for cell growth and is found in some important pathogens, such as Mycobacterium tuberculosis, it represents a potential target for the devlopment of new antibacterial drugs. This entry represents the N-terminal domain of AftA, which is predicted to contain 11 transmembrane helices.; GO: 0016757 transferase activity, transferring glycosyl groups, 0044038 cell wall macromolecule biosynthetic process, 0005886 plasma membrane, 0016021 integral to membrane
Probab=25.84 E-value=4.5e+02 Score=23.46 Aligned_cols=127 Identities=14% Similarity=0.063 Sum_probs=75.4
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHHHHH
Q 026802 15 QFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKKATL 94 (233)
Q Consensus 15 ~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~~ 94 (233)
-+..++..++|.++- +.+. .+-++-|-.++.+.++-.-+...+|....|++.-+.++++-.......+..+.
T Consensus 199 PYaAvia~~lP~~~V-la~~-------alrg~~~w~avvg~gvfLG~sA~~YTLytg~~Altvvlma~~~a~~~~~~~~p 270 (429)
T PF12250_consen 199 PYAAVIAMGLPPVLV-LAWR-------ALRGRAGWAAVVGTGVFLGLSATFYTLYTGYAALTVVLMALVAAVAVRRSWRP 270 (429)
T ss_pred chHHHHHhcccHHHH-HHHH-------hhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Confidence 366666677776652 1111 11113356788888888999999999999998888888777776553333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHH
Q 026802 95 AATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAF 153 (233)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~ 153 (233)
. .+...++++- ..++ .....+++....+++++-...+..|++-...-.|.=..+.
T Consensus 271 l-~RL~vigv~S-~~IA--li~W~PYLla~l~~~~~~~gtA~HYLP~~Ga~lp~Pm~~~ 325 (429)
T PF12250_consen 271 L-LRLAVIGVIS-IAIA--LIVWGPYLLAALRGPPASTGTAQHYLPEDGAELPLPMFQF 325 (429)
T ss_pred H-HHHHHHHHHH-HHHH--HHHHHHHHHHHhcCCCCCCCcccccCCccCCcCccchHhH
Confidence 3 3333333322 2223 3335788888887766655566667665544444333333
No 65
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=24.30 E-value=5.3e+02 Score=23.26 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhhhhhccccCC
Q 026802 107 GLGLALVVGLGLYFGSGIFSKD 128 (233)
Q Consensus 107 ~~~~~~~~~~~~~~i~~lf~~~ 128 (233)
.+++++++++..+.+-.+..+|
T Consensus 465 ~~~~~v~~~~~~~~~~~~~~~~ 486 (489)
T PRK10207 465 TLGVAVVMALMVPWLNRMINTP 486 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3444444544445554444333
No 66
>PTZ00370 STEVOR; Provisional
Probab=21.97 E-value=1.4e+02 Score=25.16 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhhccccccchhh
Q 026802 205 LRTFAGVWRMRDVYDKSLKQWKFG 228 (233)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~w~~~ 228 (233)
+.++++++++++ ||...|+..
T Consensus 269 vvliilYiwlyr---rRK~swkhe 289 (296)
T PTZ00370 269 VVLIILYIWLYR---RRKNSWKHE 289 (296)
T ss_pred HHHHHHHHHHHH---hhcchhHHH
Confidence 334444444333 266778643
No 67
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=21.77 E-value=4.2e+02 Score=21.11 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=22.2
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHhhcC
Q 026802 62 WLTSSLLADGLAVAGQAILAGAFAEK 87 (233)
Q Consensus 62 ~~~~~~~~~g~~~a~~~~i~~~~Ga~ 87 (233)
..+......+.+-+.+.++|+.+|.+
T Consensus 131 ~~~~~i~~~~~gD~~A~l~G~~fGk~ 156 (259)
T PF01148_consen 131 LALIGILILGIGDSFAYLVGRRFGKH 156 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44566688899999999999999988
No 68
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=21.28 E-value=55 Score=29.37 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=33.1
Q ss_pred HHHHhHHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHHHH
Q 026802 64 TSSLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFIL 106 (233)
Q Consensus 64 ~~~~~~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~~~ 106 (233)
+.-....|+|..+++++|+.+|+.|..+-||..-..+...+..
T Consensus 413 laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~Afivs~ 455 (510)
T KOG2468|consen 413 LAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTLAFIVSS 455 (510)
T ss_pred hhhheeeccchHHHHHHhhhhcceecCCCcceeehhhHHHHHH
Confidence 3345778999999999999999999999887766554444333
No 69
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=20.93 E-value=2.8e+02 Score=18.75 Aligned_cols=44 Identities=16% Similarity=-0.007 Sum_probs=28.9
Q ss_pred HhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 026802 80 LAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSG 123 (233)
Q Consensus 80 i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 123 (233)
+=+..|..+.+-.+.........+....++-.+......+.+..
T Consensus 32 il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~ 75 (121)
T PF02687_consen 32 ILRALGASKRQIRKMFLYEALLIALIGILIGILLGILLIIFLIN 75 (121)
T ss_pred HHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999888888777666555444444444444433
No 70
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=20.33 E-value=4.4e+02 Score=20.81 Aligned_cols=68 Identities=9% Similarity=-0.015 Sum_probs=40.7
Q ss_pred HHhHHHHHHHHHHHHhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHH
Q 026802 66 SLLADGLAVAGQAILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGI 139 (233)
Q Consensus 66 ~~~~~g~~~a~~~~i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l 139 (233)
+.+.+-+++. +..-..-...+.++-++.++++...+..+ .++..+.++.+.+.|+-+-+..+.+...+
T Consensus 15 f~iinPig~i--pvfl~lt~~~~~~~r~~ia~~~~l~a~~i----ll~f~~~G~~iL~~fgIsl~afrIaGGii 82 (201)
T TIGR00427 15 FAIINPIGNI--PIFISLTEYYTAAERNKIAKKANISSFII----LLIFLVFGDTILKLFGISIDAFRIAGGIL 82 (201)
T ss_pred HHHhCcchHH--HHHHHHhCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4444445443 44444445555665566666654444333 44566788999999998877666665443
Done!