Query 026802
Match_columns 233
No_of_seqs 109 out of 1494
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 22:32:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1E-27 3.5E-32 210.6 20.3 208 10-217 231-446 (460)
2 3mkt_A Multi antimicrobial ext 99.9 9.3E-24 3.2E-28 185.4 18.6 205 12-217 7-217 (460)
3 4hkr_A Calcium release-activat 29.9 1.8E+02 0.0063 22.1 14.1 89 28-116 29-132 (214)
4 4ev6_A Magnesium transport pro 25.7 1E+02 0.0034 25.2 5.2 26 193-225 313-338 (339)
5 2jek_A RV1873; structural geno 19.7 2.5E+02 0.0085 20.0 6.7 88 80-169 53-140 (145)
6 2iub_A CORA, divalent cation t 16.3 1.5E+02 0.005 24.5 4.2 48 168-216 302-359 (363)
7 1jvr_A HTLV-II MA, MA, human T 12.4 1.1E+02 0.0037 21.1 1.9 22 3-24 34-55 (137)
8 1b9u_A Protein (ATP synthase); 11.2 1.9E+02 0.0065 14.5 3.0 26 199-230 6-31 (34)
9 2kdc_A Diacylglycerol kinase; 8.1 5.4E+02 0.018 17.5 4.6 51 64-115 63-116 (121)
10 3hd7_B Syntaxin-1A; membrane p 6.3 6.2E+02 0.021 16.6 4.4 6 88-93 71-76 (109)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.96 E-value=1e-27 Score=210.63 Aligned_cols=208 Identities=19% Similarity=0.169 Sum_probs=197.7
Q ss_pred CCCcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCH
Q 026802 10 SLKDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDY 89 (233)
Q Consensus 10 ~~~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~ 89 (233)
+.|++.+|++++.|.|..++++.+.....+++.+++++|++++|+|+++.++.++...+..+++++..+.++|++|+||+
T Consensus 231 ~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~ 310 (460)
T 3mkt_A 231 KPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDT 310 (460)
T ss_dssp SSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHH
Q 026802 90 KKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSA 169 (233)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~ 169 (233)
|++++..+++...+..+++++++.+.++++++..+|++|+|+.+.+..++++.+++.++.+++.+..++++|.||++.++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 390 (460)
T 3mkt_A 311 KGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIF 390 (460)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHhcc-------CChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026802 170 YSMVL-VAIASIASIFVLSKA-------SGFVGIWVALTIYMGLRTFAGVWRMRDV 217 (233)
Q Consensus 170 ~~~~~-~~~~~i~l~~~~~~~-------~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 217 (233)
...+. .+++++|+++++.+. +|..|+|+++.+++.+..+...+++++.
T Consensus 391 ~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 391 HRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99765 559999999998655 9999999999999999998888877763
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.92 E-value=9.3e-24 Score=185.38 Aligned_cols=205 Identities=17% Similarity=0.090 Sum_probs=191.8
Q ss_pred CcHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHhhcCCHHH
Q 026802 12 KDLQFSRFLKNGFWLLTRVIAVTICVTLAASRAATLGSIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGAFAEKDYKK 91 (233)
Q Consensus 12 ~~~~~~~~l~~g~P~~~~~~~~~~~~~~~~~~~~~lg~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~~Ga~~~~~ 91 (233)
.++..|++++.++|.+++++...+...+|+.+++++|++++++++++.++..+...+..|++.+..+.++|++|++|+++
T Consensus 7 ~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~ 86 (460)
T 3mkt_A 7 YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHK 86 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH
Confidence 35679999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchHHHHHH
Q 026802 92 ATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVNFGASDFVYSAYS 171 (233)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~ 171 (233)
+++..+.++.+....++++.++ +.+.+++..+++.|+|+.+.+..|+++.+++.++..+....++++||.||++.++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (460)
T 3mkt_A 87 IPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVI 165 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9999999999999999987766 668899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc------cCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026802 172 MVLVAIASIASIFVLSK------ASGFVGIWVALTIYMGLRTFAGVWRMRDV 217 (233)
Q Consensus 172 ~~~~~~~~i~l~~~~~~------~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 217 (233)
.+...++++++++++.. ++|+.|+++++.+++.+..+...++++++
T Consensus 166 ~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 166 GFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999988853 69999999999999999998888777664
No 3
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=29.89 E-value=1.8e+02 Score=22.09 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHH-hcC------chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH--------hhcCCHHHH
Q 026802 28 TRVIAVTICVTLAASRAA-TLG------SIPMAAFQICLQVWLTSSLLADGLAVAGQAILAGA--------FAEKDYKKA 92 (233)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~-~lg------~~~lAa~~i~~~~~~~~~~~~~g~~~a~~~~i~~~--------~Ga~~~~~~ 92 (233)
..+++.-++.+..+.++. ++. +.-+.+|++...+......+..-+++-.-+-+-.. ..+.-.+|.
T Consensus 29 ~S~lSALLaGFAMVAmVE~ql~~~~~~p~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~ 108 (214)
T 4hkr_A 29 SSKTSALLSGFAMVAMVEVQLDHDTNVPPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERL 108 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHH
T ss_pred HHHHHHHHhccceeeEEEEeccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHH
Confidence 345556666666666655 233 34588999998888887777766666544433322 335668899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026802 93 TLAATRVLQMGFILGLGLALVVGL 116 (233)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~ 116 (233)
+.+.-.+..++.++|+++-++-..
T Consensus 109 ~~yIE~AW~fST~lGi~LFL~eva 132 (214)
T 4hkr_A 109 HWYIETAWAFSTLLGLILFLLEIA 132 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887765554443
No 4
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=25.73 E-value=1e+02 Score=25.17 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 026802 193 VGIWVALTIYMGLRTFAGVWRMRDVYDKSLKQW 225 (233)
Q Consensus 193 ~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~w 225 (233)
.|.|+.+.+ .++..+..++++|| .+|
T Consensus 313 ~gy~~~l~~-m~~~~~~~~~~fkr------k~W 338 (339)
T 4ev6_A 313 QGFWLVMAL-MVVIIMIFVYIFRR------SGW 338 (339)
T ss_dssp THHHHHHHH-HHHHHHHHHHHHHT------TTC
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHH------cCC
Confidence 355554433 44555667777887 777
No 5
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=19.71 E-value=2.5e+02 Score=20.03 Aligned_cols=88 Identities=17% Similarity=0.020 Sum_probs=57.7
Q ss_pred HhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 026802 80 LAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGVN 159 (233)
Q Consensus 80 i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l 159 (233)
.+|.+|-.+.++|+.|...-++-.=..-+ +..+.-.-......+|+. |+....-+....+-....--.....++..++
T Consensus 53 ~A~~YgI~sl~EA~AYL~hpvLg~RL~e~-~~~ll~~~~~sa~~IfG~-~D~~KlrSsMTLFa~a~~~~~~F~~vL~~~f 130 (145)
T 2jek_A 53 LAVRYGISSLEEAQAYLQHDLLGPRLHEC-TGLVNQVQGRSIEEIFGP-PDDLKLCSSMTLFARATDANQDFVALLAKYY 130 (145)
T ss_dssp HHHHTSBCSHHHHHHHHHSTTHHHHHHHH-HHHHHHCCSCCHHHHSCT-THHHHHHHHHHHHHHHCSCCHHHHHHHHHHS
T ss_pred hhhHhccCCHHHHHHHHcChHHHHHHHHH-HHHHHhccCCCHHHHcCC-hhHHHHHhHHHHHHHcCCCchHHHHHHHHHc
Confidence 48999999999999998765443333322 233333355677788888 4444544444444444332457888899999
Q ss_pred hhcCchHHHH
Q 026802 160 FGASDFVYSA 169 (233)
Q Consensus 160 ~g~g~~~~~~ 169 (233)
.|.-|.+..-
T Consensus 131 ~G~~D~~Tl~ 140 (145)
T 2jek_A 131 GGGEDRRTVA 140 (145)
T ss_dssp TTCCCHHHHH
T ss_pred CCCCCHHHHH
Confidence 9999988653
No 6
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=16.29 E-value=1.5e+02 Score=24.47 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-hccCChH---------HHHHHHHHHHHHHHHHHHHHHhh
Q 026802 168 SAYSMVLVAIASIASIFVL-SKASGFV---------GIWVALTIYMGLRTFAGVWRMRD 216 (233)
Q Consensus 168 ~~~~~~~~~~~~i~l~~~~-~~~~g~~---------G~~~a~~~~~~~~~~~~~~~~~~ 216 (233)
.|....+...+.+|+.++. .++|.+. |.|+.. +..++..+..++++||
T Consensus 302 imk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l-~~m~~i~~~~~~~Fkr 359 (363)
T 2iub_A 302 VMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVL-AVMGVIAVIMVVYFKK 359 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC--------------CHHHH-HHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3444333345566777665 3333322 222222 2234445566677777
No 7
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=12.38 E-value=1.1e+02 Score=21.05 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=16.9
Q ss_pred ccccCCCCCCcHHHHHHHhhcH
Q 026802 3 EVHLLPPSLKDLQFSRFLKNGF 24 (233)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~g~ 24 (233)
|+.--|..+|+..+|+++|+++
T Consensus 34 RLqPgPS~fDFhqLr~fLklAl 55 (137)
T 1jvr_A 34 RLQPGPSDFDFQQLRRFLKLAL 55 (137)
T ss_dssp HSSCCCSTTTHHHHHHHHHHHH
T ss_pred hcCCCCCcccHHHHHHHHHHHh
Confidence 5555566789999999999765
No 8
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=11.22 E-value=1.9e+02 Score=14.53 Aligned_cols=26 Identities=8% Similarity=-0.159 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccchhhhh
Q 026802 199 LTIYMGLRTFAGVWRMRDVYDKSLKQWKFGRQ 230 (233)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 230 (233)
+.+.+.+..++..+.++| --|+...+
T Consensus 6 ~l~~~~i~Flil~~~l~k------f~~~Pi~~ 31 (34)
T 1b9u_A 6 TILGQAIAFVLFVLFCMK------YVWPPLMA 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH------HTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 445566667777777776 55554443
No 9
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=8.10 E-value=5.4e+02 Score=17.53 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=35.8
Q ss_pred HHHHhHHHHHHHHHHHHhHHhhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026802 64 TSSLLADGLAVAGQAILAGAFAEK---DYKKATLAATRVLQMGFILGLGLALVVG 115 (233)
Q Consensus 64 ~~~~~~~g~~~a~~~~i~~~~Ga~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (233)
.......-+++|....+-. .+.. .-+++|+....+..++...+++.+...+
T Consensus 63 ~lVl~~EllNTAIE~vvD~-v~~e~h~lak~AKD~aaaAVlv~~~~a~~v~~~i~ 116 (121)
T 2kdc_A 63 MLVMIVEILNSAIEAVVDR-IGSEYHELSGRAKDMGSAAVLIAIIVAVITWCILL 116 (121)
T ss_dssp HHHHHHHTHHHHHHHHHTT-CCCCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888888764 4443 3457788888888888887777776665
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=6.29 E-value=6.2e+02 Score=16.63 Aligned_cols=6 Identities=67% Similarity=0.645 Sum_probs=2.3
Q ss_pred CHHHHH
Q 026802 88 DYKKAT 93 (233)
Q Consensus 88 ~~~~~~ 93 (233)
+.++|.
T Consensus 71 eL~kA~ 76 (109)
T 3hd7_B 71 DTKKAV 76 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
Done!