Query 026802
Match_columns 233
No_of_seqs 109 out of 1494
Neff 9.1
Searched_HMMs 13730
Date Mon Mar 25 22:32:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026802.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026802hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 13.8 1.1E+02 0.0076 16.8 3.9 18 169-186 6-23 (64)
2 d1jvra_ a.61.1.2 (A:) HTLV-II 12.4 50 0.0037 21.4 1.9 23 2-24 33-55 (137)
3 d1ppjd2 f.23.11.1 (D:196-241) 11.1 91 0.0066 16.2 2.4 18 207-230 20-37 (46)
4 d2jeka1 a.255.1.1 (A:6-145) Hy 9.7 2.3E+02 0.017 18.3 6.7 90 79-170 47-136 (140)
5 d2onkc1 f.58.1.1 (C:1-252) Mol 8.6 1.5E+02 0.011 20.6 3.8 36 80-115 161-196 (252)
6 d2fyuk1 f.23.15.1 (K:1-53) Sub 7.7 1.3E+02 0.0098 16.0 2.2 30 80-109 2-31 (53)
7 d3cx5d2 f.23.11.1 (D:261-307) 7.6 1.5E+02 0.011 15.4 2.4 17 208-230 21-37 (47)
8 d1rk8c_ b.72.3.1 (C:) Pym (Wit 7.1 43 0.0031 15.9 -0.1 12 219-230 15-26 (33)
9 d2csba3 a.60.2.4 (A:410-464) T 5.9 80 0.0058 16.2 0.6 20 119-138 16-35 (55)
10 d3dhwa1 f.58.1.1 (A:6-208) D-m 4.7 4.5E+02 0.033 17.0 5.8 49 80-128 117-165 (203)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=13.75 E-value=1.1e+02 Score=16.76 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026802 169 AYSMVLVAIASIASIFVL 186 (233)
Q Consensus 169 ~~~~~~~~~~~i~l~~~~ 186 (233)
+.....-..+.+|+.++-
T Consensus 6 mk~lT~it~iflP~t~i~ 23 (64)
T d2iuba2 6 MKVLTIIATIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344334445666777665
No 2
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=12.35 E-value=50 Score=21.37 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=18.0
Q ss_pred cccccCCCCCCcHHHHHHHhhcH
Q 026802 2 KEVHLLPPSLKDLQFSRFLKNGF 24 (233)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~g~ 24 (233)
+|++--|..+|+..+|+++|+++
T Consensus 33 yRLqPgPS~~DF~qLr~flklal 55 (137)
T d1jvra_ 33 YRLQPGPSDFDFQQLRRFLKLAL 55 (137)
T ss_dssp HHSSCCCSTTTHHHHHHHHHHHH
T ss_pred HhcCCCCCcccHHHHHHHHHHHH
Confidence 45666677789999999999865
No 3
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.12 E-value=91 Score=16.20 Aligned_cols=18 Identities=17% Similarity=0.468 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhhccccccchhhhh
Q 026802 207 TFAGVWRMRDVYDKSLKQWKFGRQ 230 (233)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~w~~~~~ 230 (233)
+....++.++ ..|...|+
T Consensus 20 l~~l~yy~KR------~~Ws~lKs 37 (46)
T d1ppjd2 20 LLPLVYAMKR------HKWSVLKS 37 (46)
T ss_dssp HHHHHHHHHH------HHHHHHHT
T ss_pred HHHHHHHHHH------Hhhhhccc
Confidence 3344555666 67776654
No 4
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.66 E-value=2.3e+02 Score=18.34 Aligned_cols=90 Identities=17% Similarity=0.010 Sum_probs=58.6
Q ss_pred HHhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 026802 79 ILAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKDVNVIHLIHIGIPFVAATQPINSLAFVFDGV 158 (233)
Q Consensus 79 ~i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~ 158 (233)
-.++.+|-++.++|+.+...=++-.=..-+ +-.+.-.-......+|+. ++....-+....+-...---.....++.-+
T Consensus 47 ~~a~~YaI~sl~EA~AYL~HPvLG~RL~ec-~~~ll~~~~~s~~~IfG~-~D~lKlrSsmTLF~~a~~~~~~F~~~L~~~ 124 (140)
T d2jeka1 47 PLAVRYGISSLEEAQAYLQHDLLGPRLHEC-TGLVNQVQGRSIEEIFGP-PDDLKLCSSMTLFARATDANQDFVALLAKY 124 (140)
T ss_dssp HHHHHTSBCSHHHHHHHHHSTTHHHHHHHH-HHHHHHCCSCCHHHHSCT-THHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHhChHhHHHHHHH-HHHHHHccCCCHHHHCCC-hhHHHHHhHHHHHHHhCCCchHHHHHHHHH
Confidence 468899999999999998765433322322 233444566777788887 444554444444443433234678889999
Q ss_pred HhhcCchHHHHH
Q 026802 159 NFGASDFVYSAY 170 (233)
Q Consensus 159 l~g~g~~~~~~~ 170 (233)
+.|.-|.+..-.
T Consensus 125 f~G~~d~~Tl~~ 136 (140)
T d2jeka1 125 YGGGEDRRTVAL 136 (140)
T ss_dssp STTCCCHHHHHH
T ss_pred hCCCCCHHHHHH
Confidence 999999886543
No 5
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.63 E-value=1.5e+02 Score=20.65 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=27.0
Q ss_pred HhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026802 80 LAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVG 115 (233)
Q Consensus 80 i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (233)
.+|..|+++.+..+++.--..+-+...+.++....-
T Consensus 161 aA~~lGas~~~~~~~i~lP~~~p~i~~~~~l~~~~~ 196 (252)
T d2onkc1 161 VARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARG 196 (252)
T ss_dssp HHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCccccceEEEhHHhHHHHHHHHHHHHHHH
Confidence 788899999999998887666666666665555444
No 6
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.70 E-value=1.3e+02 Score=16.02 Aligned_cols=30 Identities=13% Similarity=0.043 Sum_probs=21.7
Q ss_pred HhHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 026802 80 LAGAFAEKDYKKATLAATRVLQMGFILGLG 109 (233)
Q Consensus 80 i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~ 109 (233)
.++.+|.+-.+-++.-...+...+.+.++.
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~gl~ 31 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGAVG 31 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhhee
Confidence 467788888888888888776666655443
No 7
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.63 E-value=1.5e+02 Score=15.38 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhccccccchhhhh
Q 026802 208 FAGVWRMRDVYDKSLKQWKFGRQ 230 (233)
Q Consensus 208 ~~~~~~~~~~~~~~~~~w~~~~~ 230 (233)
....+++++ -+|...|+
T Consensus 21 ~~~~~y~KR------~kWs~lKs 37 (47)
T d3cx5d2 21 YLLSIWVKK------FKWAGIKT 37 (47)
T ss_dssp HHHHHHHHH------HHHHHHHT
T ss_pred HHHHHHHHH------hhcccccc
Confidence 344555666 66766554
No 8
>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=7.07 E-value=43 Score=15.93 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=7.7
Q ss_pred ccccccchhhhh
Q 026802 219 DKSLKQWKFGRQ 230 (233)
Q Consensus 219 ~~~~~~w~~~~~ 230 (233)
++..+.|++.++
T Consensus 15 qRpDGtWRK~rr 26 (33)
T d1rk8c_ 15 KRPDGTWRKARR 26 (33)
T ss_dssp ECTTSCEECCEE
T ss_pred cCCCCcccccee
Confidence 356678887653
No 9
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=5.86 E-value=80 Score=16.23 Aligned_cols=20 Identities=15% Similarity=-0.162 Sum_probs=12.2
Q ss_pred hhhhccccCCHHHHHHHHHH
Q 026802 119 YFGSGIFSKDVNVIHLIHIG 138 (233)
Q Consensus 119 ~~i~~lf~~~~~v~~~~~~~ 138 (233)
+.++.-|++++.+.+.+.++
T Consensus 16 erllrafgnpervkqlaref 35 (55)
T d2csba3 16 ERLLRAFGNPERVKQLAREF 35 (55)
T ss_dssp HHHHHHHSSHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 44555677766676666543
No 10
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=4.69 E-value=4.5e+02 Score=17.00 Aligned_cols=49 Identities=10% Similarity=0.067 Sum_probs=34.0
Q ss_pred HhHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCC
Q 026802 80 LAGAFAEKDYKKATLAATRVLQMGFILGLGLALVVGLGLYFGSGIFSKD 128 (233)
Q Consensus 80 i~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~ 128 (233)
.++..|+++.+..++..--...-....+........+....+....+.+
T Consensus 117 aa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig~~ 165 (203)
T d3dhwa1 117 ASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 165 (203)
T ss_dssp HHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTCC
T ss_pred HHHHcCCchhhhhHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999988877766666666666666654444444444443
Done!