BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026803
MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRAVSISSPDL
RTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGVPTSP
GGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQV
VFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQRRTQAA

High Scoring Gene Products

Symbol, full name Information P value
AT5G19940 protein from Arabidopsis thaliana 1.1e-66

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026803
        (233 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2147720 - symbol:AT5G19940 species:3702 "Arabi...   678  1.1e-66   1


>TAIR|locus:2147720 [details] [associations]
            symbol:AT5G19940 species:3702 "Arabidopsis thaliana"
            [GO:0005198 "structural molecule activity" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IEA;IDA] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0019344 "cysteine biosynthetic process"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
            evidence=RCA] [GO:0030003 "cellular cation homeostasis"
            evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
            evidence=RCA] [GO:0070838 "divalent metal ion transport"
            evidence=RCA] InterPro:IPR006843 Pfam:PF04755 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0005198 GO:GO:0009941 GO:GO:0009534
            EMBL:AF296836 EMBL:AY052240 EMBL:AY060505 EMBL:AY087141
            IPI:IPI00536244 RefSeq:NP_197494.1 UniGene:At.31238
            UniGene:At.66761 STRING:Q941D3 PaxDb:Q941D3 PRIDE:Q941D3
            EnsemblPlants:AT5G19940.1 GeneID:832116 KEGG:ath:AT5G19940
            GeneFarm:2861 TAIR:At5g19940 eggNOG:NOG326941 HOGENOM:HOG000005808
            InParanoid:Q941D3 OMA:PLIFGEW ProtClustDB:CLSN2687182
            Genevestigator:Q941D3 Uniprot:Q941D3
        Length = 239

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 144/241 (59%), Positives = 174/241 (72%)

Query:     1 MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCK----RSPRTALKIVRAVSIS 56
             MAA A SLT++S  S+P T   S  S+ +N     S+P K    RS R  L +V +VS  
Sbjct:     1 MAATASSLTIASSFSEPRTQIHS--SRRLNLPLQYSIPYKVLRSRSRRLGL-VVSSVSAP 57

Query:    57 SPDLRTGPDDLVASILSKVNQSDGGVSLXXXXXXXXXXXXXXLQKYCVEAPVKCPLIFGV 116
             + +LRTGPDDL++++LSKV  SDGGV+L              LQKYCV+ PVK PLIFG 
Sbjct:    58 NVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGD 117

Query:   117 --------PTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKG 168
                     PTSPGGGYRS  GRLFFKTKEMIQA++APD VRNKVS  A GFLDG+VSL G
Sbjct:   118 WEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSLTG 177

Query:   169 KLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQR 228
             KL ALD +W+QV+FEPPE+KVG LEF+YG +SEVKL+ITY+DEK+RLGLGS+GSLFVF+R
Sbjct:   178 KLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDEKLRLGLGSKGSLFVFRR 237

Query:   229 R 229
             R
Sbjct:   238 R 238


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      233       219   0.00092  112 3  11 22  0.38    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  153 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.34u 0.11s 16.45t   Elapsed:  00:00:01
  Total cpu time:  16.34u 0.11s 16.45t   Elapsed:  00:00:01
  Start:  Sat May 11 06:23:18 2013   End:  Sat May 11 06:23:19 2013

Back to top