BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026803
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q941D3|PAP8_ARATH Probable plastid-lipid-associated protein 8, chloroplastic
OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1
Length = 239
Score = 295 bits (755), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/241 (63%), Positives = 186/241 (77%), Gaps = 15/241 (6%)
Query: 1 MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCK----RSPRTALKIVRAVSIS 56
MAA A SLT++S S+P T S S+ +N S+P K RS R L +V +VS
Sbjct: 1 MAATASSLTIASSFSEPRTQIHS--SRRLNLPLQYSIPYKVLRSRSRRLGL-VVSSVSAP 57
Query: 57 SPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFG- 115
+ +LRTGPDDL++++LSKV SDGGV+L+ E+HKEVA+VA ELQKYCV+ PVK PLIFG
Sbjct: 58 NVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGD 117
Query: 116 -------VPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKG 168
PTSPGGGYRS GRLFFKTKEMIQA++APD VRNKVS A GFLDG+VSL G
Sbjct: 118 WEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSLTG 177
Query: 169 KLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQR 228
KL ALD +W+QV+FEPPE+KVG LEF+YG +SEVKL+ITY+DEK+RLGLGS+GSLFVF+R
Sbjct: 178 KLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDEKLRLGLGSKGSLFVFRR 237
Query: 229 R 229
R
Sbjct: 238 R 238
>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic
OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1
Length = 242
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 165 SLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLF 224
S+ G + L+ K + V + ++ +G + + + +L+ITY+DE++RL G +G+LF
Sbjct: 171 SVTGDIKPLNSKKVAVKLQVFKI-LGFIPIKAPDSARGELEITYVDEELRLSRGDKGNLF 229
Query: 225 VFQ 227
+ +
Sbjct: 230 ILK 232
>sp|Q9K809|SPPA_BACHD Putative signal peptide peptidase SppA OS=Bacillus halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
/ C-125) GN=sppA PE=3 SV=1
Length = 331
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 61 RTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGVPTSP 120
+ G D +A I+ +VN GGV + E HK+V E+ Q+ +K PV + G +
Sbjct: 93 KAGEDPNIAGIILQVNTPGGGVLESAEIHKQVEEIVQDSEK-----PVYVSM--GNMAAS 145
Query: 121 GGGYRSA 127
GG Y SA
Sbjct: 146 GGYYISA 152
>sp|Q9LX99|GRIMP_ARATH Geminivirus Rep-interacting motor protein OS=Arabidopsis thaliana
GN=GRIMP PE=1 SV=1
Length = 1273
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 27 KPINASFSASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAK 86
+P +S +AS RT ++R SIS+P L P +AS KVN V LAK
Sbjct: 19 EPRKSSSNASFAESTGHRTTGPLLRRNSISTPSL--PPKQAIAS---KVNGLKEKVKLAK 73
Query: 87 EEHKEVAEVAQELQKY 102
E++ E+ + A +LQ+Y
Sbjct: 74 EDYLELRQEATDLQEY 89
>sp|O34525|SPPA_BACSU Putative signal peptide peptidase SppA OS=Bacillus subtilis (strain
168) GN=sppA PE=1 SV=1
Length = 335
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 61 RTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGVPTSP 120
R D V I+ KVN GGV + E HK++ E+ +E +K P+ + G +
Sbjct: 95 RAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKK-----PIYVSM--GSMAAS 147
Query: 121 GGGYRSAFGRLFFKTKEMI 139
GG Y S F T E +
Sbjct: 148 GGYYISTAADKIFATPETL 166
>sp|Q9A823|LEU1_CAUCR 2-isopropylmalate synthase OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=leuA PE=3 SV=1
Length = 524
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 13/139 (9%)
Query: 60 LRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKC-PLIFGVPT 118
L+ PD ++ +I V+ + V + ++ ++ K CVEA +K +P
Sbjct: 121 LQMEPDAVLEAITRSVSHARNLVGDVEWSAEDATRTERDFLKRCVEAAIKAGATTINLPD 180
Query: 119 SPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWI 178
+ G Y S +G LF +++I +V D K F+A D +++ + A++
Sbjct: 181 TVGYSYPSEYGELF---RDVITSVPGAD----KAIFSAHCHNDLGLAVANSIAAIEGGAR 233
Query: 179 QVVFEPPELKVGGLEFRYG 197
QV E+ + G+ R G
Sbjct: 234 QV-----EVAINGIGERAG 247
>sp|B8H607|LEU1_CAUCN 2-isopropylmalate synthase OS=Caulobacter crescentus (strain NA1000
/ CB15N) GN=leuA PE=3 SV=1
Length = 524
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 13/139 (9%)
Query: 60 LRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKC-PLIFGVPT 118
L+ PD ++ +I V+ + V + ++ ++ K CVEA +K +P
Sbjct: 121 LQMEPDAVLEAITRSVSHARNLVGDVEWSAEDATRTERDFLKRCVEAAIKAGATTINLPD 180
Query: 119 SPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWI 178
+ G Y S +G LF +++I +V D K F+A D +++ + A++
Sbjct: 181 TVGYSYPSEYGELF---RDVITSVPGAD----KAIFSAHCHNDLGLAVANSIAAIEGGAR 233
Query: 179 QVVFEPPELKVGGLEFRYG 197
QV E+ + G+ R G
Sbjct: 234 QV-----EVAINGIGERAG 247
>sp|Q5M755|PAP7_ARATH Probable plastid-lipid-associated protein 7, chloroplastic
OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1
Length = 273
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 122 GGYRSAFG-RLFFKTKEMIQAVEAPD--TVRN-KVSFTALGFLDGEVSLKGKLNALDEKW 177
G R+ G R F +++Q ++ TV K L LDGE + +
Sbjct: 150 GSKRTKLGLRDFVSLGDLLQQIDIAQGKTVHVLKFDVRGLNLLDGEFRIVASFKISSKSS 209
Query: 178 IQVVFEPPELKVGGLEFRYGGQSEVKL---------QITYIDEKIRLGLGSRGSLFVFQR 228
+++ +E +K L + ++ L +I+Y+DE +++G +G++FV +R
Sbjct: 210 VEITYESSTIKPDQLMNIFRKNMDLLLGIFNPEGLFEISYLDEDLQVGRDGKGNVFVLER 269
>sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana
GN=ABCC14 PE=1 SV=1
Length = 1539
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 48 KIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQK-YCVEA 106
+++R S+ SP L D+ + S L N + G L KEE +EV +V+ ++ K Y EA
Sbjct: 916 RVLRTTSMESPRLSELNDESIKSFLGS-NIPEDGSRLIKEEEREVGQVSFQVYKLYSTEA 974
>sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4
PE=1 SV=2
Length = 1516
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 38 PCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQ 97
P SPRT S+ SP L D+ + S L DG L KEE +E +V+
Sbjct: 891 PHASSPRT--------SMESPHLSDLNDEHIKSFLGSHIVEDGS-KLIKEEERETGQVSL 941
Query: 98 ELQK-YCVEA 106
+ K YC EA
Sbjct: 942 GVYKQYCTEA 951
>sp|Q9CXP8|GBG10_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10
OS=Mus musculus GN=Gng10 PE=3 SV=1
Length = 68
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 88 EHKEVAEVAQELQKYCVEAPVKCPLIFGVPT 118
E +V++ A ELQ+YC++ K L+ GVP
Sbjct: 24 ERIKVSQAAAELQQYCIQNACKDALLLGVPA 54
>sp|Q9CWS0|DDAH1_MOUSE N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Mus musculus
GN=Ddah1 PE=1 SV=3
Length = 285
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 42 SPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAK--EEHKEVAEVAQEL 99
S + ALKI++ +S D T PDD+ A+ + S G V L + EE+ E A+V ++L
Sbjct: 193 SAQKALKIMQQMSDHRYDKLTVPDDMAANCIYLNIPSKGHVLLHRTPEEYPESAKVYEKL 252
Query: 100 QKY 102
+ +
Sbjct: 253 KDH 255
>sp|O08557|DDAH1_RAT N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 OS=Rattus
norvegicus GN=Ddah1 PE=1 SV=3
Length = 285
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 42 SPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAK--EEHKEVAEVAQEL 99
S + ALKI++ +S D T PDD+ A+ + S G V L + EE+ E A+V ++L
Sbjct: 193 SAQKALKIMQQMSDHRYDKLTVPDDMAANCIYLNIPSKGHVLLHRTPEEYPESAKVYEKL 252
Query: 100 QKY 102
+ +
Sbjct: 253 KDH 255
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,343,472
Number of Sequences: 539616
Number of extensions: 3207177
Number of successful extensions: 7993
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 7984
Number of HSP's gapped (non-prelim): 17
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)