Query 026803
Match_columns 233
No_of_seqs 138 out of 344
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 22:34:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026803.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026803hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gzv_A Hypothetical protein; A 76.1 26 0.00088 27.9 9.8 64 117-183 9-79 (142)
2 4i95_A Putative uncharacterize 69.6 40 0.0014 26.7 9.8 65 117-184 9-80 (142)
3 4fxi_A MRNA interferase RELE; 33.0 90 0.0031 22.5 5.5 49 85-143 19-68 (95)
4 2ia9_A Putative septation prot 26.2 53 0.0018 24.5 3.2 27 198-226 18-49 (100)
5 3oei_C RELK (toxin RV3358); to 20.3 1.2E+02 0.0041 22.0 4.2 41 85-130 32-74 (96)
6 3g5o_B Uncharacterized protein 19.5 99 0.0034 22.2 3.5 41 85-131 34-75 (102)
7 1qwd_A Outer membrane lipoprot 19.3 3.3E+02 0.011 21.2 11.3 31 201-231 113-146 (177)
8 3fsi_A RT, reverse transcripta 19.1 62 0.0021 26.8 2.7 46 82-129 41-91 (255)
9 2kvu_A MKL/myocardin-like prot 18.4 1.8E+02 0.0062 20.5 4.5 35 63-103 30-64 (75)
10 3bpq_B Toxin RELE3; protein to 17.5 2.2E+02 0.0076 18.5 4.9 40 86-131 18-61 (88)
No 1
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=76.06 E-value=26 Score=27.93 Aligned_cols=64 Identities=11% Similarity=0.117 Sum_probs=45.2
Q ss_pred CCCCCceeeee--ecc-----cceeccceEEEEcCCCceeEEEEeeeCCccceEEEEEEEEEEcCCcEEEEEEe
Q 026803 117 PTSPGGGYRSA--FGR-----LFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFE 183 (233)
Q Consensus 117 ~~~l~G~WrL~--lgr-----~~~~~g~v~Q~Id~~~~v~N~V~~~~~g~l~G~v~v~a~~~~~~~~rv~V~F~ 183 (233)
+..|.|-|+++ ... .-++.+.++-+|..++++.|++-... -...+...|+++..+|....-..+
T Consensus 9 ~~~L~GvWQ~c~y~~~~~~~~~~l~~s~~~KIlS~DgtF~N~~m~~~---~~aiIt~yGtY~l~SD~~Y~E~i~ 79 (142)
T 4gzv_A 9 AADLKGIWQLCHYVSESPDVPGALKPSNTFKVLSDDGRIVNFTIIPG---ADAIITGYGTYKQLTDDSYKESIE 79 (142)
T ss_dssp SCCCCEEEEEEEEEESSTTSCCEEEEEEEEEEECTTSEEEEEECCTT---SCCEEEEEEEEEEEETTEEEEEEE
T ss_pred cccceEEeEEeeEeecCCCCCceEeecCceEEECCCCcEEEEEEeCC---CCcEEEEeEEEEecCCCeeeeeec
Confidence 56689999997 221 12356778999998889999996432 123467889999988877665544
No 2
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=69.60 E-value=40 Score=26.75 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=45.2
Q ss_pred CCCCCceeeeeecc---c----ceeccceEEEEcCCCceeEEEEeeeCCccceEEEEEEEEEEcCCcEEEEEEec
Q 026803 117 PTSPGGGYRSAFGR---L----FFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEP 184 (233)
Q Consensus 117 ~~~l~G~WrL~lgr---~----~~~~g~v~Q~Id~~~~v~N~V~~~~~g~l~G~v~v~a~~~~~~~~rv~V~F~~ 184 (233)
+..|.|-|++..=. . .++-+..+-+|..++++.|++-..+ ....+...|+++..++..+.-..++
T Consensus 9 ~~~L~GvWQ~C~y~s~~pd~~g~L~psn~lKIlSdDgtF~Ni~m~~~---~~aiIt~~GtY~~~SD~~Y~E~IeK 80 (142)
T 4i95_A 9 PAHLQGIWQLCHYVSENPDIPGVLKPSNTFKVLSDDGRIVNFTIRPG---TDAIITGYGTYRQISAAAYKESIEK 80 (142)
T ss_dssp CCSCCEEEEEEEEECSSTTSCCEEEEEEEEEEECTTSEEEEEECCTT---SCCEEEEEEEEEEEETTEEEEEEEE
T ss_pred cccceeEeEEEEEecCCCCCceEeccCccEEEEcCCCcEEEEEEecC---CCcEEEEeEEEEecCCcceeeeecc
Confidence 45689999997211 1 3455678999998889999997632 2235678899998887766555443
No 3
>4fxi_A MRNA interferase RELE; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, B-ME on Cys50; HET: CME; 1.80A {Escherichia coli} PDB: 4fxe_D 3kha_A* 4fxh_A* 2kc8_A 2kc9_A 3kiq_y* 3kis_y* 3kiu_y* 3kix_y*
Probab=32.97 E-value=90 Score=22.49 Aligned_cols=49 Identities=8% Similarity=0.040 Sum_probs=29.5
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCCCcccCCCCCCCc-eeeeeecccceeccceEEEEc
Q 026803 85 AKEEHKEVAEVAQELQKYCVEAPVKCPLIFGVPTSPGG-GYRSAFGRLFFKTKEMIQAVE 143 (233)
Q Consensus 85 s~~~r~~I~~lI~~LEa~n~~~Pt~~Pl~~g~~~~l~G-~WrL~lgr~~~~~g~v~Q~Id 143 (233)
++..++.|.+.|++|.. | |.|...++. . ..+| .|++..|.. .-+||+.|
T Consensus 19 d~~~~~ri~~~l~~l~~-n-P~~~~k~L~---g-~~~~y~~RlRvg~Y----Riiy~i~d 68 (95)
T 4fxi_A 19 GSTVREQLKKKLVEVLE-S-PRIEANKLR---G-MPDCYKIKLRSSGY----RLVYQVID 68 (95)
T ss_dssp CHHHHHHHHHHHHHHHH-S-CCCGGGBCS---S-STTEEEEECTTSCE----EEEEEEEG
T ss_pred CHHHHHHHHHHHHHHhh-C-CCCcCccCc---C-CCCCCeEEEEeCCe----EEEEEEEC
Confidence 45678889888888853 5 223334553 2 3455 699987754 11465554
No 4
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=26.18 E-value=53 Score=24.51 Aligned_cols=27 Identities=41% Similarity=0.552 Sum_probs=20.5
Q ss_pred CCceeEEEEEEecC-----CeEEEeCCCCcEEEE
Q 026803 198 GQSEVKLQITYIDE-----KIRLGLGSRGSLFVF 226 (233)
Q Consensus 198 ~~~~GwldiTYLDe-----~lRIsRG~kGslFVl 226 (233)
+.=+|.-.+|+ || +++|--|++| +||-
T Consensus 18 gklkA~aSVt~-dd~fvI~dIkVieg~~G-lFVa 49 (100)
T 2ia9_A 18 GRMRAIASITL-DHEFVVHDIRVIDGNNG-LFVA 49 (100)
T ss_dssp SSEEEEEEEEE-TTTEEEEEEEEEEETTE-EEEE
T ss_pred CCEEEEEEEEE-CCEEEEeeEEEEECCCc-eEEE
Confidence 34467777776 54 8999999998 9985
No 5
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=20.30 E-value=1.2e+02 Score=22.04 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=25.8
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCC--CCcccCCCCCCCceeeeeecc
Q 026803 85 AKEEHKEVAEVAQELQKYCVEAPVK--CPLIFGVPTSPGGGYRSAFGR 130 (233)
Q Consensus 85 s~~~r~~I~~lI~~LEa~n~~~Pt~--~Pl~~g~~~~l~G~WrL~lgr 130 (233)
.+..++.|.++|++|+. |+-.+.. .|+. . .+.|.|+..++.
T Consensus 32 dk~~~krI~~~I~~l~~-nP~~g~gK~e~Lk---g-~l~g~~s~RI~~ 74 (96)
T 3oei_C 32 DRKTARRITRLIGEIQR-DPFSGIGKPEPLQ---G-ELSGYWSRRIDD 74 (96)
T ss_dssp CHHHHHHHHHHHHHHHH-CTTSSTTCCEECC---G-GGTTCEEEESSS
T ss_pred CHHHHHHHHHHHHHHHh-CCCcCCCchhhcC---C-CCCCcEEEECCC
Confidence 34567889999998874 5111122 2453 2 257889998775
No 6
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=19.49 E-value=99 Score=22.18 Aligned_cols=41 Identities=22% Similarity=0.193 Sum_probs=26.1
Q ss_pred ChhhHHHHHHHH-HHHHHhcCCCCCCCCcccCCCCCCCceeeeeeccc
Q 026803 85 AKEEHKEVAEVA-QELQKYCVEAPVKCPLIFGVPTSPGGGYRSAFGRL 131 (233)
Q Consensus 85 s~~~r~~I~~lI-~~LEa~n~~~Pt~~Pl~~g~~~~l~G~WrL~lgr~ 131 (233)
.+..++.|.+.| ++|+ .| |.+...|+. . .+.|.|++.+|..
T Consensus 34 ~~~~~~~I~~~I~~~L~-~~-P~~~gk~L~---g-~~~g~~r~Rig~y 75 (102)
T 3g5o_B 34 PPRILAAVVEFAFGDLS-RE-PLRVGKPLR---R-ELAGTFSARRGTY 75 (102)
T ss_dssp CHHHHHHHHHHHTTHHH-HC-TTTSSEECC---G-GGTTCEEEECSSE
T ss_pred CHHHHHHHHHHHHHHHH-hC-cccCCeecc---C-CCceEEEEEeCCE
Confidence 456778888888 7775 45 122234553 2 2578899998754
No 7
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=19.27 E-value=3.3e+02 Score=21.20 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=22.8
Q ss_pred eeEEEEEEecCCeE---EEeCCCCcEEEEEeccc
Q 026803 201 EVKLQITYIDEKIR---LGLGSRGSLFVFQRRTQ 231 (233)
Q Consensus 201 ~GwldiTYLDe~lR---IsRG~kGslFVl~R~~~ 231 (233)
.+-+.+.++|++-+ ++..++..++||.|..+
T Consensus 113 ~~~y~Vl~tD~~Ya~~~v~~~~~~~~wILsR~p~ 146 (177)
T 1qwd_A 113 YGGYNVIALDREYRHALVCGPDRDYLWILSRTPT 146 (177)
T ss_dssp EEEEEEEEEBTTSSEEEEECSSTTCEEEEESSSS
T ss_pred cceEEEEEECCCeeEEEEecCCCcEEEEEECCCC
Confidence 46667899998833 34457778999999764
No 8
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=19.10 E-value=62 Score=26.85 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=26.9
Q ss_pred ccCChhhHHHHHHHHHHHHHhcCCC----CCCCCcccCCCCCC-Cceeeeeec
Q 026803 82 VSLAKEEHKEVAEVAQELQKYCVEA----PVKCPLIFGVPTSP-GGGYRSAFG 129 (233)
Q Consensus 82 ~~as~~~r~~I~~lI~~LEa~n~~~----Pt~~Pl~~g~~~~l-~G~WrL~lg 129 (233)
...++++++++.+.|++|...+.=. |..+|.. --..- .|.||+.++
T Consensus 41 ~~~~~~~~~~~~~~i~~ll~~G~I~~~~sp~~sp~~--~V~Kk~~g~~R~~~D 91 (255)
T 3fsi_A 41 YPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLL--PVKKPGTNDYRPVQD 91 (255)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSEEEECCSCBCCBC--CC-------CCCCBC
T ss_pred ccCCHHHHHHHHHHHHHHHhCCeEEecCCCeECcee--EeecCCCCceeEEeE
Confidence 4567888999999999998876322 3334443 11222 499999643
No 9
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=18.40 E-value=1.8e+02 Score=20.48 Aligned_cols=35 Identities=3% Similarity=0.050 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHhccCCCCccCChhhHHHHHHHHHHHHHhc
Q 026803 63 GPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYC 103 (233)
Q Consensus 63 ~~~~lK~~LL~aia~t~rG~~as~~~r~~I~~lI~~LEa~n 103 (233)
...+||++|-. ||+.++--+.+-|+.|.+.++..+
T Consensus 30 kVaeLK~eLk~------RGL~~sG~KaeLIeRL~~~~~~~~ 64 (75)
T 2kvu_A 30 KVAELKQELKL------RSLPVSGTKTELIERLRAYQDQIS 64 (75)
T ss_dssp CHHHHHHHHHH------TTCCCCSCHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHH------cCCCCCCCHHHHHHHHHHHHHccC
Confidence 36788887765 787776666666777766666544
No 10
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=17.52 E-value=2.2e+02 Score=18.54 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCC----CCcccCCCCCCCceeeeeeccc
Q 026803 86 KEEHKEVAEVAQELQKYCVEAPVK----CPLIFGVPTSPGGGYRSAFGRL 131 (233)
Q Consensus 86 ~~~r~~I~~lI~~LEa~n~~~Pt~----~Pl~~g~~~~l~G~WrL~lgr~ 131 (233)
+..++.+.+++++++.+. .+|.. .++. . ..|.|++.+|..
T Consensus 18 ~~~~~~i~~~i~~~~~l~-~~P~~~~~~~~l~----g-~~~~~~~rv~~y 61 (88)
T 3bpq_B 18 GHIRKRIKLIIEECQNSN-SLNDLKLDIKKIK----G-YHNYYRIRVGNY 61 (88)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCC-CCCCEEECT----T-SSSEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHhcc-cCcCcccCceecc----C-CCCeEEEEECCE
Confidence 455677888888887654 12431 2332 1 468999988754
Done!