Query 026803
Match_columns 233
No_of_seqs 138 out of 344
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 22:34:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026803.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026803hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wmia1 d.298.1.2 (A:1-88) Hyp 45.5 9.9 0.00072 25.2 3.7 61 85-154 19-82 (88)
2 d1xhca3 d.87.1.1 (A:290-351) N 36.0 6.4 0.00047 25.3 1.3 29 176-204 2-33 (62)
3 d1mu2a2 e.8.1.2 (A:3-429) HIV- 33.9 19 0.0014 31.2 4.5 46 82-129 22-74 (427)
4 d2gu3a1 d.17.1.6 (A:99-161) Un 26.0 27 0.0019 22.3 3.1 23 194-216 23-46 (63)
5 d2gyc31 a.108.1.1 (3:2-48) Rib 24.1 34 0.0025 20.6 3.1 27 68-103 3-29 (47)
6 d2zd1b1 e.8.1.2 (B:5-428) HIV- 18.0 43 0.0031 28.7 3.7 45 83-129 21-72 (424)
7 d2hsga1 a.35.1.5 (A:2-58) Gluc 16.2 43 0.0032 20.6 2.4 18 83-100 27-44 (57)
8 d1qpza1 a.35.1.5 (A:2-58) Puri 16.0 44 0.0032 20.6 2.4 18 83-100 26-43 (57)
9 d1o75a2 b.1.20.1 (A:333-414) T 15.9 40 0.0029 21.8 2.2 24 162-185 50-73 (82)
10 d1v8ha1 b.1.18.19 (A:2-107) Su 15.6 93 0.0068 21.3 4.4 20 192-211 74-93 (106)
No 1
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=45.53 E-value=9.9 Score=25.16 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=33.6
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCCCccc-C--CCCCCCceeeeeecccceeccceEEEEcCCCceeEEEEe
Q 026803 85 AKEEHKEVAEVAQELQKYCVEAPVKCPLIF-G--VPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSF 154 (233)
Q Consensus 85 s~~~r~~I~~lI~~LEa~n~~~Pt~~Pl~~-g--~~~~l~G~WrL~lgr~~~~~g~v~Q~Id~~~~v~N~V~~ 154 (233)
.+..+..|.+.+++|+. | |.+.|... + ......|.|++.+|.. .-+|++- .+..+..++.+
T Consensus 19 ~~~~~~~I~~~l~~L~~-~---P~~~~~~~~~kL~G~~~~~~~rlRvG~Y----Riiy~i~-~~~~~I~V~~I 82 (88)
T d1wmia1 19 PKAHYRRFLEFRDILEY-E---PVPREKFDVIKLEGTGDLDLYRARLGDY----RVIYSVN-WKDKVIKILKL 82 (88)
T ss_dssp CHHHHHHHHHHHHHHTT-C---SCCHHHHTCEEEECCSSEEEEEEECSSS----EEEEEEE-TTTTEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHh-C---cCcCCccccccccCCCCCCEEEEEeCCc----EEEEEEE-CCeeEEEEEEE
Confidence 56677888888877764 4 54433210 0 1223456899998875 1245543 33445555544
No 2
>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}
Probab=36.00 E-value=6.4 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=20.7
Q ss_pred cEEEEEEecceEeeCceeeee-C-CCcee-EE
Q 026803 176 KWIQVVFEPPELKVGGLEFRY-G-GQSEV-KL 204 (233)
Q Consensus 176 ~rv~V~F~~~~l~~g~~~~~l-~-~~~~G-wl 204 (233)
.+.++.|.+..++||.+.+.+ + ....| |+
T Consensus 2 d~YdF~frSs~FKfgd~~iAiiG~~~g~G~Wi 33 (62)
T d1xhca3 2 RRYNFKFRSTVFKFGKLQIAIIGNTKGEGKWI 33 (62)
T ss_dssp CCCCSSCCEEEEEETTEEEEEEECCSSCEEEE
T ss_pred CccCcEeeeeeeeeCCccEEEEEeccCcceee
Confidence 456778889999999888876 3 34444 54
No 3
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=33.87 E-value=19 Score=31.19 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=28.4
Q ss_pred ccCChhhHHHHHHHHHHHHHhcCC------CCCCCCcccCCCCCC-Cceeeeeec
Q 026803 82 VSLAKEEHKEVAEVAQELQKYCVE------APVKCPLIFGVPTSP-GGGYRSAFG 129 (233)
Q Consensus 82 ~~as~~~r~~I~~lI~~LEa~n~~------~Pt~~Pl~~g~~~~l-~G~WrL~lg 129 (233)
-..++++++++.+.|++|+..+.= .|-.+|... -..- .|.||+.++
T Consensus 22 ~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~--V~KKd~gk~Rl~vD 74 (427)
T d1mu2a2 22 WPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFA--IKKKDKNKWRMLID 74 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEE--CCCCC----CEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEE--EEcCCCCCcEEEEc
Confidence 456899999999999999998731 233445431 1233 489999754
No 4
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=26.02 E-value=27 Score=22.32 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=14.3
Q ss_pred eeeC-CCceeEEEEEEecCCeEEE
Q 026803 194 FRYG-GQSEVKLQITYIDEKIRLG 216 (233)
Q Consensus 194 ~~l~-~~~~GwldiTYLDe~lRIs 216 (233)
+.++ ....-.||+||+|++=|.+
T Consensus 23 v~LG~~~~~pvWEVtY~~~~~~l~ 46 (63)
T d2gu3a1 23 VHLAREGNVLLWEVTYLDKEGQYS 46 (63)
T ss_dssp EEEEEETTEEEEEEEEECTTSCEE
T ss_pred EeeeeECCEEEEEEEEEeCCCCEE
Confidence 3444 2333345999999876655
No 5
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=24.07 E-value=34 Score=20.56 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=20.6
Q ss_pred HHHHHHHhccCCCCccCChhhHHHHHHHHHHHHHhc
Q 026803 68 VASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYC 103 (233)
Q Consensus 68 K~~LL~aia~t~rG~~as~~~r~~I~~lI~~LEa~n 103 (233)
|+++|++|+.. .--+|-+||..+|..-
T Consensus 3 ke~Ileaia~M---------SVmdvveLi~amEEKF 29 (47)
T d2gyc31 3 KDQIIEAVAAM---------SVMDVVELISAMEEKF 29 (47)
T ss_dssp HHHHHHHHHHS---------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh---------hHHHHHHHHHHHHHHh
Confidence 78999999865 2356888999998654
No 6
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=18.00 E-value=43 Score=28.73 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=30.3
Q ss_pred cCChhhHHHHHHHHHHHHHhcCCCC------CCCCcccCCCCCCCc-eeeeeec
Q 026803 83 SLAKEEHKEVAEVAQELQKYCVEAP------VKCPLIFGVPTSPGG-GYRSAFG 129 (233)
Q Consensus 83 ~as~~~r~~I~~lI~~LEa~n~~~P------t~~Pl~~g~~~~l~G-~WrL~lg 129 (233)
..++++.+++.+.|++|++.+.=+| -.+|... -..-+| +||+.++
T Consensus 21 pLs~ek~~al~~~i~~ll~~G~I~~~~s~Sp~~sPvf~--V~KKdg~k~R~~iD 72 (424)
T d2zd1b1 21 PLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFA--IKKKDSTKWRKLVD 72 (424)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSEEECCTTCCCBBCEEE--ECCTTCSSCEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHCCeeEecCCCCCCcCCeEE--EEeCCCCceEEEEc
Confidence 4789999999999999999874222 3334321 123345 6999855
No 7
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=16.23 E-value=43 Score=20.58 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=16.0
Q ss_pred cCChhhHHHHHHHHHHHH
Q 026803 83 SLAKEEHKEVAEVAQELQ 100 (233)
Q Consensus 83 ~as~~~r~~I~~lI~~LE 100 (233)
.++++.|++|.+++++|.
T Consensus 27 ~Vs~~tr~rV~~aa~~lg 44 (57)
T d2hsga1 27 NVKPSTRKKVLETIERLG 44 (57)
T ss_dssp TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 479999999999999984
No 8
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.05 E-value=44 Score=20.59 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.8
Q ss_pred cCChhhHHHHHHHHHHHH
Q 026803 83 SLAKEEHKEVAEVAQELQ 100 (233)
Q Consensus 83 ~as~~~r~~I~~lI~~LE 100 (233)
.++++.|++|.+++++|-
T Consensus 26 ~vs~~tr~rV~~~a~~lg 43 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELH 43 (57)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 478999999999999884
No 9
>d1o75a2 b.1.20.1 (A:333-414) Tp47 lipoprotein, middle and C-terminal domains {Treponema pallidum [TaxId: 160]}
Probab=15.90 E-value=40 Score=21.79 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.7
Q ss_pred eEEEEEEEEEEcCCcEEEEEEecc
Q 026803 162 GEVSLKGKLNALDEKWIQVVFEPP 185 (233)
Q Consensus 162 G~v~v~a~~~~~~~~rv~V~F~~~ 185 (233)
|...+.|.|.|-...+++|+|+++
T Consensus 50 gqnvlsadftpgteytvevrfkef 73 (82)
T d1o75a2 50 GQNVLSADFTPGTEYTVEVRFKEF 73 (82)
T ss_dssp EEEEEEEEECTTCEEEEEEECSSS
T ss_pred ccceeccccCCCceEEEEEEeecc
Confidence 566788999999999999999875
No 10
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=15.58 E-value=93 Score=21.28 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=14.8
Q ss_pred eeeeeCCCceeEEEEEEecC
Q 026803 192 LEFRYGGQSEVKLQITYIDE 211 (233)
Q Consensus 192 ~~~~l~~~~~GwldiTYLDe 211 (233)
+.|.+.+...|-+.++|.|+
T Consensus 74 ~~F~~~~~~~g~l~v~~~Dn 93 (106)
T d1v8ha1 74 YAFKFKAEKAGTFTIKLKDT 93 (106)
T ss_dssp EEEEEECCSCEEEEEEEEET
T ss_pred EEEEEccCCCceEEEEEEEC
Confidence 35666666678899999886
Done!