BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026804
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR 133
E +GV +G P A K A L+K V ++ ++R ++ S L K++ ++
Sbjct: 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDA 71
Query: 134 GEVVSEDIIFGLLSKRLE-----DGYYRDNFIVTNRGGSL--------KEKLEAYAELSK 180
G++VS++++ L+ K LE +G+ D F T R + KEKL++ E S
Sbjct: 72 GKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSI 131
Query: 181 P 181
P
Sbjct: 132 P 132
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEV 136
+G+ +G P A K A L++ V ++ ++R ++ S L K++ ++ G++
Sbjct: 15 KGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 74
Query: 137 VSEDIIFGLLSKRLE-----DGYYRDNFIVTNRGGSL--------KEKLEAYAELSKP 181
VS++++ L+ K LE +G+ D F T R + KEKL++ E S P
Sbjct: 75 VSDEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP 132
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
+G+P A K A+ + + +P+IS ++R + S L KQ + ++ G++V+++++
Sbjct: 5 LLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRDNFIV 161
L+ +R+ R+ F++
Sbjct: 65 IALVKERIAQEDCRNGFLL 83
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
+G+P A K A+ + + +P+IS ++R + S L KQ + ++ G++V+++++
Sbjct: 5 LLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRDNFIV 161
L+ +R+ R+ F++
Sbjct: 65 IALVKERIAQEDCRNGFLL 83
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
+G+P A K A+ + + +P+IS ++R + S L KQ + ++ G++V+++++
Sbjct: 5 LLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELV 64
Query: 143 FGLLSKRLEDGYYRDNFIV 161
L+ +R+ R+ F++
Sbjct: 65 IALVKERIAQEDCRNGFLL 83
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K AE + +P IS + R + + L Q ++RG++V
Sbjct: 1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 139 EDIIFGLLSKRL-----EDGYYRDNF 159
+++ G++ +RL ++G+ D F
Sbjct: 61 DEVTIGIVRERLSKDDCQNGFLLDGF 86
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K AE + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRL-----EDGYYRDNF 159
+++ G++ +RL E G+ D F
Sbjct: 61 DEVTIGIVRERLSKSDCERGFLLDGF 86
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRL-----EDGYYRDNF 159
+++ G++ +RL E G+ D F
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGF 86
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRL-----EDGYYRDNF 159
+++ G++ +RL E G+ D F
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGF 86
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV 137
G F+G P A K A L++ L ++S I+R ++ + L +++ + RG++V
Sbjct: 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLV 63
Query: 138 SEDIIFGLLSKRLEDGYYRDNF 159
+D+I L+ + L + D F
Sbjct: 64 PDDLILELIREELAERVIFDGF 85
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRL-----EDGYYRDNF 159
+++ G++ +RL E G+ D F
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGF 86
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
+G+P A K A + + +P+IS +R + + L + + G++V + +I
Sbjct: 13 LLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSLI 72
Query: 143 FGLLSKRLE-----DGYYRDNF 159
GL+ +RL+ +GY D F
Sbjct: 73 IGLVKERLKEADCANGYLFDGF 94
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRL-----EDGYYRDNF 159
+++ G++ +RL E G+ D F
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGF 86
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRL-----EDGYYRDNF 159
+++ G++ +RL E G+ D F
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGF 86
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRL-----EDGYYRDNF 159
+++ G++ +RL E G+ D F
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGF 86
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRL-----EDGYYRDNF 159
+++ G++ +RL E G+ D F
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGF 86
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K E + + +P IS + R + + L + + +++GE+V
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 139 EDIIFGLLSKRL-----EDGYYRDNF 159
+++ G++ +RL E G+ D F
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGF 86
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140
F+G P A K A+ L+K IS I+R+ + + L K+ + RGE+V +D
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 141 IIFGLLSK 148
+I L+ +
Sbjct: 63 LIIALIEE 70
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 168 LKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVE 203
+K++LE Y E + PL +YY K+K +L S PVE
Sbjct: 158 IKKRLEVYREQTAPLIEYY-KKKGILRIIDASKPVE 192
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K AE + + E+P IS + R + + L + + +++G +V
Sbjct: 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVP 60
Query: 139 EDIIFGLLSKRL-----EDGYYRDNF 159
+++ G++ +RL + G+ D F
Sbjct: 61 DEVTIGIVHERLSKDDCQKGFLLDGF 86
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 77 RGVHW--AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134
RG H +G P A K A L++ L +P+IS + R+++ + L + ++ G
Sbjct: 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAG 76
Query: 135 EVVSEDIIFGLLSKRLEDGYYRDNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLE 194
++V D+ L+ RL + + FI+ +E L + LE +LE
Sbjct: 77 DLVPSDLTNELVDDRLNNPDAANGFILD----GYPRSVEQAKALHEMLERRGTDIDAVLE 132
Query: 195 FQV 197
F+V
Sbjct: 133 FRV 135
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 42/81 (51%)
Query: 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140
+ F+G+P + K + L K +S ++R+ ++ L +I N +N G++V +
Sbjct: 32 YIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQ 91
Query: 141 IIFGLLSKRLEDGYYRDNFIV 161
++ L+ ++L+ + FI+
Sbjct: 92 MVLSLVDEKLKTPQCKKGFIL 112
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
+G P A K A L++ L +P+IS + R+++ + L + ++ G++V D+
Sbjct: 5 LLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLT 64
Query: 143 FGLLSKRLEDGYYRDNFIV 161
L+ RL + + FI+
Sbjct: 65 NELVDDRLNNPDAANGFIL 83
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 48/178 (26%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
IG P + K E L + +S ++R++L+ S K I + + RG++V I+
Sbjct: 17 IIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIV 76
Query: 143 FGLLSKR-----------LEDGYYRD--------------NFIV---------TNR---- 164
LL + L DGY R+ ++ TNR
Sbjct: 77 LELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQM 136
Query: 165 ----------GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 212
++ ++LEAY S P+ YY+ + +L + P + + L TA+
Sbjct: 137 SRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAI 194
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138
++ +G P A K A+ + + P IS + R + + L + + +++G +V
Sbjct: 1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVP 60
Query: 139 EDIIFGLLSKRL-----EDGYYRDNF 159
+++ G++ +RL ++G+ D F
Sbjct: 61 DEVTIGIVRERLSKSDCDNGFLLDGF 86
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
G + K ++ + I I R+ + + L K+ ++RG++V +DI
Sbjct: 5 IFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDIT 64
Query: 143 FGLLSKRLE----DGYYRDNF 159
++ + LE DG+ D F
Sbjct: 65 IPMVLETLESKGKDGWLLDGF 85
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII 142
G + K ++ + I I R+ + + L K+ ++RG++V +DI
Sbjct: 5 IFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDIT 64
Query: 143 FGLLSKRLE----DGYYRDNF 159
++ + LE DG+ D F
Sbjct: 65 IPMVLETLESKGKDGWLLDGF 85
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Query: 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSS---LHKQIANA 130
E RRG HW G PR AE L K+ EV + +I + L R S +H
Sbjct: 100 ENRRGQHWLLDGFPRTLGQ--AEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRV 157
Query: 131 ----VNRGEVVSEDIIFGLLSKRLEDGYYRDNFIVTNRGGSLKEKLEAYAELSKPLEDYY 186
N V D + G + ED ++ ++ +L Y +++KP+ + Y
Sbjct: 158 YNLDFNPPHVHGIDDVTGEPLVQQED----------DKPEAVAARLRQYKDVAKPVIELY 207
Query: 187 QKQKKLLEFQVGSAPVETW 205
+ + L +F G+ + W
Sbjct: 208 KSRGVLHQFS-GTETNKIW 225
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 48/158 (30%)
Query: 84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF 143
+G P + K E L + +S ++R ++ S K++ + RGE+V +++
Sbjct: 35 LGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVL 94
Query: 144 GLLSKR-----------LEDGYYRD------------------NFIVT------------ 162
LL + L DGY R+ NF V+
Sbjct: 95 ALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRA 154
Query: 163 ---NRGG----SLKEKLEAYAELSKPLEDYYQKQKKLL 193
NR ++ ++ + EL+KP+ ++Y++Q K++
Sbjct: 155 ETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVI 192
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSS 122
E RRG HW G PR AE L K+ EV + +I + L R S
Sbjct: 78 ENRRGQHWLLDGFPRTLGQ--AEALDKICEVDLVISLNIPFETLKDRLS 124
>pdb|1ZKO|A Chain A, Crystal Structure Of Glycine Cleavage System H Protein
(Tm0212) From Thermotoga Maritima At 1.65 A Resolution
pdb|1ZKO|B Chain B, Crystal Structure Of Glycine Cleavage System H Protein
(Tm0212) From Thermotoga Maritima At 1.65 A Resolution
Length = 136
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104
V LP+ GRE ++G A I S +A VYA + K++EV
Sbjct: 50 VDLPEV-GREVKKGEVVASIESVKAAADVYAPLSGKIVEV 88
>pdb|2KA7|A Chain A, Nmr Solution Structure Of Tm0212 At 40 C
Length = 124
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 65 VTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104
V LP+ GRE ++G A I S +A VYA + K++EV
Sbjct: 38 VDLPEV-GREVKKGEVVASIESVKAAADVYAPLSGKIVEV 76
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 160 IVTNRGGSLKEKLE---AYAE----LSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 212
IV G+ ++ LE AY + KPL +Y Q+KL V E +G+L A+
Sbjct: 260 IVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTV-----ELGKGMLLAI 314
Query: 213 HLQHINAA 220
HL I A
Sbjct: 315 HLGRIKDA 322
>pdb|3L9F|A Chain A, The Crystal Structure Of Smu.1604c From Streptococcus
Mutans Ua159
pdb|3L9F|B Chain B, The Crystal Structure Of Smu.1604c From Streptococcus
Mutans Ua159
pdb|3L9F|C Chain C, The Crystal Structure Of Smu.1604c From Streptococcus
Mutans Ua159
pdb|3L9F|D Chain D, The Crystal Structure Of Smu.1604c From Streptococcus
Mutans Ua159
Length = 204
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 117 LSPRSSLHKQIANA--VNRGEVVSEDIIFGLLSKRLEDGY 154
L PR S + + RG + +DII G+LSK+ GY
Sbjct: 14 LVPRGSHMASMTGGQQMGRGSMQGKDIILGILSKKERSGY 53
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 167 SLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETW 205
++ ++L+AY + +KP+ +YYQK K +LE G+ + W
Sbjct: 168 TVIKRLKAYEDQTKPVLEYYQK-KGVLETFSGTETNKIW 205
>pdb|1SZQ|A Chain A, Crystal Structure Of 2-Methylcitrate Dehydratase
pdb|1SZQ|B Chain B, Crystal Structure Of 2-Methylcitrate Dehydratase
Length = 483
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 129 NAVNRGEVVSEDIIFGLLSKRLEDGYYRDNFIVTNRGGSLKEKLEAYAELSKPLEDYYQK 188
N +R + + LL RL Y DN R +L+EK+ + E DY+
Sbjct: 340 NPADRDHCIQYXVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCF-EDPAFTADYHDP 398
Query: 189 QKK------LLEFQVGS 199
+K+ LEF G+
Sbjct: 399 EKRAIANAITLEFTDGT 415
>pdb|3LQZ|B Chain B, Crystal Structure Of Hla-dp2
Length = 212
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 154 YYRDNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLE 194
Y R+ F+ R S + A EL +P E+Y+ QK +LE
Sbjct: 53 YNREEFV---RFDSDVGEFRAVTELGRPDEEYWNSQKDILE 90
>pdb|2P8T|A Chain A, Hypothetical Protein Ph0730 From Pyrococcus Horikoshii Ot3
Length = 200
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 156 RDNFIVTNRGGSL----KEKLEAYAELSKPLEDYY-QKQKKLLEFQVGSAPVETW----- 205
RD I + G++ K+ + E +PL++ Y + KK+++++ G A + TW
Sbjct: 114 RDEAIKFDAKGAMILTVKDNEIVFPEDFRPLKEMYPEVAKKIVDYEDGDAVIITWAETPA 173
Query: 206 QGLLTALHLQHI 217
+ L +A+H+ +I
Sbjct: 174 KALKSAIHVAYI 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,654,731
Number of Sequences: 62578
Number of extensions: 265409
Number of successful extensions: 861
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 822
Number of HSP's gapped (non-prelim): 58
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)