Query 026804
Match_columns 233
No_of_seqs 176 out of 1462
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 12:57:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 1.3E-29 2.9E-34 222.6 16.5 135 78-212 31-243 (244)
2 PLN02459 probable adenylate ki 100.0 8.5E-29 1.8E-33 219.1 17.3 142 77-218 28-255 (261)
3 KOG3079 Uridylate kinase/adeny 100.0 1.2E-28 2.5E-33 206.5 15.9 140 75-214 5-193 (195)
4 PRK14526 adenylate kinase; Pro 100.0 4.1E-27 8.8E-32 202.8 17.1 137 79-215 1-210 (211)
5 PRK14528 adenylate kinase; Pro 99.9 1.4E-26 3E-31 195.1 16.6 134 79-212 2-186 (186)
6 PRK14529 adenylate kinase; Pro 99.9 1.8E-26 3.9E-31 200.4 16.0 133 79-212 1-222 (223)
7 PTZ00088 adenylate kinase 1; P 99.9 2.5E-26 5.5E-31 200.2 16.7 136 77-212 5-229 (229)
8 PRK14531 adenylate kinase; Pro 99.9 3.6E-26 7.7E-31 191.6 16.8 133 79-212 3-182 (183)
9 PRK13808 adenylate kinase; Pro 99.9 2.5E-26 5.5E-31 209.5 16.5 137 79-215 1-194 (333)
10 PRK00279 adk adenylate kinase; 99.9 5E-26 1.1E-30 195.0 16.8 136 79-214 1-214 (215)
11 TIGR01351 adk adenylate kinase 99.9 7.7E-26 1.7E-30 193.3 16.5 133 80-212 1-209 (210)
12 PRK14532 adenylate kinase; Pro 99.9 1.6E-25 3.5E-30 187.3 16.5 135 79-213 1-186 (188)
13 COG0563 Adk Adenylate kinase a 99.9 8.4E-26 1.8E-30 190.0 14.2 129 79-212 1-177 (178)
14 PRK02496 adk adenylate kinase; 99.9 4.4E-25 9.5E-30 184.3 16.4 136 78-213 1-183 (184)
15 PRK14527 adenylate kinase; Pro 99.9 1.3E-24 2.8E-29 183.0 16.2 135 77-212 5-190 (191)
16 PLN02200 adenylate kinase fami 99.9 2.3E-24 5E-29 188.2 17.7 140 76-216 41-226 (234)
17 TIGR01359 UMP_CMP_kin_fam UMP- 99.9 5.5E-24 1.2E-28 176.7 16.3 132 80-212 1-182 (183)
18 PRK14530 adenylate kinase; Pro 99.9 1.4E-23 3E-28 179.9 17.2 133 78-214 3-213 (215)
19 PF00406 ADK: Adenylate kinase 99.9 2E-24 4.4E-29 175.1 11.2 109 83-191 1-151 (151)
20 KOG3078 Adenylate kinase [Nucl 99.9 1.9E-24 4.2E-29 187.9 11.8 139 77-216 14-226 (235)
21 cd01428 ADK Adenylate kinase ( 99.9 1.3E-21 2.8E-26 163.2 13.3 125 80-204 1-194 (194)
22 TIGR01360 aden_kin_iso1 adenyl 99.9 1.6E-20 3.5E-25 155.6 16.8 136 78-213 3-186 (188)
23 PLN02842 nucleotide kinase 99.9 6.8E-21 1.5E-25 181.7 15.0 131 82-214 1-202 (505)
24 PRK03839 putative kinase; Prov 99.5 4.1E-13 8.9E-18 111.6 12.9 124 79-215 1-154 (180)
25 PRK13974 thymidylate kinase; P 99.4 3.9E-12 8.5E-17 109.1 12.2 138 77-214 2-206 (212)
26 COG0703 AroK Shikimate kinase 99.4 2E-12 4.3E-17 108.2 9.4 131 78-215 2-169 (172)
27 PRK08233 hypothetical protein; 99.3 5.5E-11 1.2E-15 97.9 13.7 38 77-114 2-39 (182)
28 PRK13949 shikimate kinase; Pro 99.3 3.8E-11 8.3E-16 99.9 12.8 125 79-212 2-169 (169)
29 PRK13973 thymidylate kinase; P 99.2 2E-10 4.4E-15 98.6 13.2 139 77-215 2-207 (213)
30 PRK03731 aroL shikimate kinase 99.2 2.4E-10 5.2E-15 93.9 12.5 127 79-213 3-169 (171)
31 PRK08356 hypothetical protein; 99.2 3.9E-10 8.4E-15 95.3 12.4 132 78-214 5-192 (195)
32 PRK13948 shikimate kinase; Pro 99.2 1.3E-09 2.9E-14 92.0 14.9 130 77-214 9-175 (182)
33 PRK13947 shikimate kinase; Pro 99.1 2E-09 4.4E-14 88.2 14.7 37 80-116 3-39 (171)
34 PRK01184 hypothetical protein; 99.1 3.9E-09 8.4E-14 87.8 15.4 38 79-117 2-39 (184)
35 TIGR01313 therm_gnt_kin carboh 99.1 2.1E-09 4.5E-14 87.7 12.9 132 81-212 1-161 (163)
36 COG1102 Cmk Cytidylate kinase 99.1 1.6E-09 3.5E-14 90.0 12.1 39 79-117 1-39 (179)
37 PRK13946 shikimate kinase; Pro 99.1 5.3E-09 1.1E-13 87.7 15.3 134 75-214 7-176 (184)
38 PRK00131 aroK shikimate kinase 99.1 5.3E-09 1.2E-13 85.1 14.8 41 77-117 3-43 (175)
39 PRK00625 shikimate kinase; Pro 99.1 2E-09 4.3E-14 90.2 12.3 39 79-117 1-39 (173)
40 PLN02924 thymidylate kinase 99.1 3.3E-09 7.1E-14 92.1 13.3 140 73-214 11-203 (220)
41 PRK14021 bifunctional shikimat 99.1 2.1E-09 4.6E-14 104.5 13.3 134 75-215 3-177 (542)
42 PHA02530 pseT polynucleotide k 99.1 1.1E-09 2.3E-14 97.8 10.4 124 79-203 3-171 (300)
43 PRK06217 hypothetical protein; 99.0 5.9E-09 1.3E-13 87.2 14.0 38 79-116 2-39 (183)
44 COG1936 Predicted nucleotide k 99.0 2.5E-09 5.5E-14 89.5 11.3 127 79-214 1-156 (180)
45 PRK06762 hypothetical protein; 99.0 7.4E-09 1.6E-13 84.7 13.7 135 78-214 2-164 (166)
46 PRK00081 coaE dephospho-CoA ki 99.0 6.5E-09 1.4E-13 88.1 13.1 52 79-131 3-54 (194)
47 PLN02199 shikimate kinase 99.0 1.1E-08 2.3E-13 92.7 14.1 131 77-214 101-288 (303)
48 PRK14730 coaE dephospho-CoA ki 99.0 1.2E-08 2.7E-13 86.7 13.9 53 79-131 2-54 (195)
49 PRK08118 topology modulation p 99.0 8E-10 1.7E-14 91.8 5.9 84 79-165 2-88 (167)
50 PRK00698 tmk thymidylate kinas 99.0 8.2E-09 1.8E-13 86.6 12.1 26 77-102 2-27 (205)
51 PRK04182 cytidylate kinase; Pr 99.0 7.5E-09 1.6E-13 84.8 11.2 38 79-116 1-38 (180)
52 PRK13975 thymidylate kinase; P 98.9 3.4E-08 7.3E-13 82.6 14.8 28 78-105 2-29 (196)
53 cd01672 TMPK Thymidine monopho 98.9 3.7E-08 7.9E-13 81.5 14.7 31 79-109 1-34 (200)
54 PRK08154 anaerobic benzoate ca 98.9 1.4E-08 3.1E-13 92.1 12.7 135 72-214 127-301 (309)
55 PRK14738 gmk guanylate kinase; 98.9 7.3E-09 1.6E-13 88.6 10.0 144 74-219 9-199 (206)
56 KOG3347 Predicted nucleotide k 98.9 7.7E-09 1.7E-13 85.0 9.4 41 76-116 5-45 (176)
57 PF13207 AAA_17: AAA domain; P 98.9 1.7E-09 3.6E-14 83.6 4.1 34 80-113 1-34 (121)
58 PRK05057 aroK shikimate kinase 98.9 5.4E-08 1.2E-12 81.0 13.2 39 78-116 4-42 (172)
59 TIGR00041 DTMP_kinase thymidyl 98.8 1.2E-07 2.6E-12 79.2 14.6 27 77-103 2-28 (195)
60 PRK13951 bifunctional shikimat 98.8 1.6E-08 3.5E-13 97.2 10.1 125 79-209 1-156 (488)
61 PRK12339 2-phosphoglycerate ki 98.8 1.5E-09 3.2E-14 92.8 2.6 43 77-119 2-44 (197)
62 COG3265 GntK Gluconate kinase 98.8 4.5E-08 9.8E-13 80.3 11.0 130 84-214 1-159 (161)
63 PRK14734 coaE dephospho-CoA ki 98.8 1.4E-07 3.1E-12 80.5 14.5 52 79-131 2-53 (200)
64 TIGR02173 cyt_kin_arch cytidyl 98.8 1E-07 2.2E-12 77.6 12.8 38 79-116 1-38 (171)
65 cd00227 CPT Chloramphenicol (C 98.8 6.9E-08 1.5E-12 80.1 12.0 135 78-212 2-174 (175)
66 COG0125 Tmk Thymidylate kinase 98.8 2.5E-07 5.4E-12 79.9 15.2 134 76-215 1-204 (208)
67 PF01202 SKI: Shikimate kinase 98.8 3.6E-08 7.7E-13 80.7 9.6 120 87-213 1-158 (158)
68 PRK00023 cmk cytidylate kinase 98.8 2.1E-07 4.4E-12 81.0 14.5 39 77-115 3-41 (225)
69 COG0283 Cmk Cytidylate kinase 98.8 2.8E-07 6E-12 79.8 14.3 38 78-115 4-41 (222)
70 PRK07261 topology modulation p 98.7 2E-08 4.4E-13 83.5 6.5 74 79-152 1-78 (171)
71 PRK10078 ribose 1,5-bisphospho 98.7 1.8E-07 3.9E-12 78.3 12.3 134 79-214 3-176 (186)
72 TIGR00152 dephospho-CoA kinase 98.7 1.1E-07 2.5E-12 79.6 10.7 50 80-129 1-50 (188)
73 PRK05537 bifunctional sulfate 98.7 1.4E-07 3.1E-12 92.3 12.9 137 76-216 390-564 (568)
74 PRK14731 coaE dephospho-CoA ki 98.7 2E-07 4.3E-12 79.9 12.2 46 77-123 4-49 (208)
75 PRK04040 adenylate kinase; Pro 98.7 2.5E-07 5.5E-12 78.3 12.5 39 78-116 2-42 (188)
76 PRK00300 gmk guanylate kinase; 98.7 2.9E-07 6.3E-12 77.6 12.6 27 77-103 4-30 (205)
77 KOG3354 Gluconate kinase [Carb 98.7 2.2E-07 4.7E-12 77.0 10.2 136 79-214 13-188 (191)
78 PRK13477 bifunctional pantoate 98.7 4.4E-07 9.5E-12 87.8 13.9 39 77-115 283-321 (512)
79 smart00072 GuKc Guanylate kina 98.6 1.8E-07 3.8E-12 78.4 9.5 25 78-102 2-26 (184)
80 TIGR02322 phosphon_PhnN phosph 98.6 6.2E-07 1.3E-11 74.1 12.4 26 79-104 2-27 (179)
81 cd02022 DPCK Dephospho-coenzym 98.6 6.8E-08 1.5E-12 80.6 6.0 51 80-131 1-51 (179)
82 COG0194 Gmk Guanylate kinase [ 98.6 5.9E-07 1.3E-11 76.2 11.1 130 77-216 3-184 (191)
83 TIGR00017 cmk cytidylate kinas 98.6 1.4E-06 3E-11 75.5 13.3 38 79-116 3-40 (217)
84 PRK09825 idnK D-gluconate kina 98.6 8.5E-07 1.9E-11 74.3 11.3 126 78-215 3-169 (176)
85 PTZ00451 dephospho-CoA kinase; 98.6 1.6E-06 3.5E-11 76.5 13.3 51 79-129 2-52 (244)
86 PLN02422 dephospho-CoA kinase 98.6 1.8E-06 3.9E-11 75.8 13.5 50 80-130 3-52 (232)
87 PF13671 AAA_33: AAA domain; P 98.5 1.4E-07 3E-12 74.5 5.9 37 80-116 1-37 (143)
88 PRK14733 coaE dephospho-CoA ki 98.5 4.2E-06 9.1E-11 72.0 14.6 43 77-119 5-47 (204)
89 PRK11545 gntK gluconate kinase 98.5 6.2E-07 1.3E-11 74.0 9.0 129 84-214 1-160 (163)
90 PRK03846 adenylylsulfate kinas 98.5 8.5E-07 1.8E-11 75.1 10.0 142 74-216 20-194 (198)
91 TIGR03574 selen_PSTK L-seryl-t 98.5 1.5E-06 3.2E-11 76.0 11.8 134 80-214 1-169 (249)
92 TIGR03263 guanyl_kin guanylate 98.5 1.3E-06 2.8E-11 72.1 10.8 31 78-108 1-31 (180)
93 PRK11860 bifunctional 3-phosph 98.5 1.9E-06 4.2E-11 85.7 13.8 40 77-116 441-480 (661)
94 PRK14732 coaE dephospho-CoA ki 98.5 2.2E-06 4.8E-11 73.1 12.1 48 81-129 2-49 (196)
95 PRK06547 hypothetical protein; 98.5 4E-07 8.7E-12 76.2 6.8 40 76-115 13-52 (172)
96 cd00464 SK Shikimate kinase (S 98.5 2.1E-07 4.5E-12 74.5 4.7 38 80-117 1-38 (154)
97 TIGR00455 apsK adenylylsulfate 98.5 6.9E-07 1.5E-11 74.4 8.0 136 76-212 16-184 (184)
98 PRK12338 hypothetical protein; 98.4 2.7E-06 5.8E-11 77.9 12.2 42 77-118 3-44 (319)
99 PRK05541 adenylylsulfate kinas 98.4 2.2E-06 4.9E-11 70.8 10.1 139 76-217 5-175 (176)
100 PF02223 Thymidylate_kin: Thym 98.4 1.1E-06 2.4E-11 73.2 8.2 47 83-132 1-47 (186)
101 COG0237 CoaE Dephospho-CoA kin 98.4 4.7E-07 1E-11 77.8 5.9 50 78-128 2-51 (201)
102 PRK07933 thymidylate kinase; V 98.4 5.1E-06 1.1E-10 71.6 12.4 24 79-102 1-24 (213)
103 PRK03333 coaE dephospho-CoA ki 98.4 5.7E-06 1.2E-10 77.7 13.3 49 79-128 2-50 (395)
104 PRK00889 adenylylsulfate kinas 98.4 1.9E-06 4.1E-11 71.1 8.9 138 77-215 3-171 (175)
105 PRK14737 gmk guanylate kinase; 98.4 8.2E-06 1.8E-10 69.0 12.6 27 76-102 2-28 (186)
106 PRK13976 thymidylate kinase; P 98.4 1.4E-05 3E-10 68.9 14.1 25 79-103 1-25 (209)
107 cd02020 CMPK Cytidine monophos 98.3 4.2E-07 9.1E-12 71.9 4.0 33 80-112 1-33 (147)
108 PRK05800 cobU adenosylcobinami 98.3 5.8E-07 1.3E-11 75.1 4.1 37 79-115 2-40 (170)
109 cd02021 GntK Gluconate kinase 98.3 5.3E-07 1.2E-11 72.3 3.6 35 80-114 1-35 (150)
110 PRK04220 2-phosphoglycerate ki 98.3 1.6E-05 3.4E-10 72.3 12.9 41 76-116 90-130 (301)
111 COG0529 CysC Adenylylsulfate k 98.3 1.2E-05 2.7E-10 68.0 11.3 139 75-217 20-194 (197)
112 PRK05506 bifunctional sulfate 98.2 4.5E-06 9.7E-11 82.6 9.0 139 76-215 458-629 (632)
113 PF01583 APS_kinase: Adenylyls 98.2 2.1E-05 4.7E-10 65.0 11.0 42 77-119 1-47 (156)
114 PF01121 CoaE: Dephospho-CoA k 98.2 3.7E-06 7.9E-11 71.0 6.2 51 79-130 1-51 (180)
115 PRK12337 2-phosphoglycerate ki 98.2 2.2E-05 4.7E-10 75.2 11.6 41 76-116 253-293 (475)
116 PRK12269 bifunctional cytidyla 98.1 2.8E-06 6E-11 86.7 5.3 44 73-116 29-72 (863)
117 PF00004 AAA: ATPase family as 98.1 3.2E-06 6.8E-11 65.3 3.8 29 81-109 1-29 (132)
118 COG4088 Predicted nucleotide k 98.1 1.1E-05 2.5E-10 69.9 7.2 24 79-102 2-25 (261)
119 PRK09518 bifunctional cytidyla 98.1 3.4E-06 7.4E-11 84.6 4.6 37 79-115 2-38 (712)
120 COG1618 Predicted nucleotide k 98.1 3.8E-05 8.2E-10 64.1 9.9 138 77-215 4-178 (179)
121 cd02030 NDUO42 NADH:Ubiquinone 98.0 8.7E-05 1.9E-09 63.9 12.4 28 80-107 1-28 (219)
122 PRK06696 uridine kinase; Valid 98.0 5.2E-06 1.1E-10 71.6 4.7 40 75-114 19-63 (223)
123 KOG3327 Thymidylate kinase/ade 98.0 8.9E-05 1.9E-09 63.1 11.6 135 76-215 3-196 (208)
124 TIGR01663 PNK-3'Pase polynucle 98.0 6.1E-06 1.3E-10 80.2 4.6 58 75-137 366-423 (526)
125 PF00625 Guanylate_kin: Guanyl 98.0 4.4E-05 9.4E-10 63.7 9.2 26 78-103 2-27 (183)
126 PF07931 CPT: Chloramphenicol 98.0 9.5E-05 2.1E-09 62.2 11.2 132 79-213 2-174 (174)
127 KOG3220 Similar to bacterial d 97.9 0.00034 7.3E-09 60.4 13.6 52 79-131 2-53 (225)
128 COG2074 2-phosphoglycerate kin 97.9 6.3E-05 1.4E-09 66.9 8.9 43 75-117 86-128 (299)
129 cd02019 NK Nucleoside/nucleoti 97.9 1.1E-05 2.5E-10 57.2 3.5 29 80-108 1-32 (69)
130 PF05496 RuvB_N: Holliday junc 97.9 2.1E-05 4.5E-10 68.9 5.1 31 79-109 51-81 (233)
131 PRK05480 uridine/cytidine kina 97.9 1.6E-05 3.5E-10 67.5 4.3 39 76-114 4-45 (209)
132 PLN02772 guanylate kinase 97.8 0.00016 3.4E-09 68.1 11.1 26 77-102 134-159 (398)
133 PF13238 AAA_18: AAA domain; P 97.8 1.4E-05 3.1E-10 61.3 3.4 22 81-102 1-22 (129)
134 cd02024 NRK1 Nicotinamide ribo 97.8 1.4E-05 3.1E-10 67.9 3.5 36 80-115 1-37 (187)
135 PLN02165 adenylate isopentenyl 97.8 2.7E-05 5.9E-10 71.7 5.3 37 76-112 41-77 (334)
136 smart00763 AAA_PrkA PrkA AAA d 97.8 2.4E-05 5.1E-10 72.8 4.4 49 51-104 56-104 (361)
137 TIGR00235 udk uridine kinase. 97.8 2.8E-05 6E-10 66.2 4.4 39 75-113 3-44 (207)
138 CHL00181 cbbX CbbX; Provisiona 97.8 0.00044 9.6E-09 62.3 12.1 28 75-102 56-83 (287)
139 cd03115 SRP The signal recogni 97.7 0.00081 1.7E-08 55.2 12.6 23 80-102 2-24 (173)
140 PF03029 ATP_bind_1: Conserved 97.7 0.00018 3.8E-09 63.2 9.1 117 83-211 1-148 (238)
141 smart00382 AAA ATPases associa 97.7 2.7E-05 5.9E-10 58.8 3.4 28 78-105 2-29 (148)
142 PF13401 AAA_22: AAA domain; P 97.7 0.00018 3.9E-09 55.7 7.9 86 78-168 4-99 (131)
143 PF13521 AAA_28: AAA domain; P 97.7 2.3E-05 5.1E-10 63.9 2.7 32 80-114 1-32 (163)
144 PRK00091 miaA tRNA delta(2)-is 97.7 4.8E-05 1.1E-09 69.3 4.9 36 77-112 3-38 (307)
145 PLN02840 tRNA dimethylallyltra 97.7 6.2E-05 1.3E-09 71.3 5.7 36 76-111 19-54 (421)
146 PRK05416 glmZ(sRNA)-inactivati 97.7 0.00076 1.6E-08 61.0 12.5 29 79-108 7-35 (288)
147 PRK07667 uridine kinase; Provi 97.7 3.9E-05 8.5E-10 64.8 3.6 39 77-115 16-59 (193)
148 TIGR02881 spore_V_K stage V sp 97.7 6.5E-05 1.4E-09 66.3 5.1 27 76-102 40-66 (261)
149 PF07728 AAA_5: AAA domain (dy 97.7 4.8E-05 1E-09 60.1 3.9 29 81-109 2-30 (139)
150 PF06414 Zeta_toxin: Zeta toxi 97.6 5.8E-05 1.2E-09 63.9 4.3 41 76-117 13-56 (199)
151 COG0645 Predicted kinase [Gene 97.6 0.0004 8.6E-09 58.2 8.8 96 79-177 2-126 (170)
152 TIGR01241 FtsH_fam ATP-depende 97.6 0.00053 1.1E-08 66.0 10.9 32 79-110 89-120 (495)
153 PF01745 IPT: Isopentenyl tran 97.6 0.00064 1.4E-08 59.3 10.2 81 80-161 3-95 (233)
154 TIGR00390 hslU ATP-dependent p 97.6 6.7E-05 1.5E-09 71.2 4.5 35 77-111 46-80 (441)
155 PRK05201 hslU ATP-dependent pr 97.6 0.00014 2.9E-09 69.2 6.2 35 77-111 49-83 (443)
156 TIGR02880 cbbX_cfxQ probable R 97.6 0.0016 3.5E-08 58.5 12.9 26 77-102 57-82 (284)
157 PRK12724 flagellar biosynthesi 97.5 0.00083 1.8E-08 63.9 11.2 81 76-165 221-308 (432)
158 cd02027 APSK Adenosine 5'-phos 97.5 0.00012 2.6E-09 59.5 4.6 36 81-116 2-41 (149)
159 cd02028 UMPK_like Uridine mono 97.5 7.3E-05 1.6E-09 62.6 3.3 36 80-115 1-41 (179)
160 PHA00729 NTP-binding motif con 97.5 9.3E-05 2E-09 64.8 4.1 25 79-103 18-42 (226)
161 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00012 2.6E-09 59.1 4.3 45 52-105 5-49 (133)
162 cd02023 UMPK Uridine monophosp 97.5 8.6E-05 1.9E-09 62.4 3.4 35 80-114 1-38 (198)
163 KOG0737 AAA+-type ATPase [Post 97.5 0.00044 9.6E-09 64.3 8.1 46 64-109 113-158 (386)
164 TIGR00064 ftsY signal recognit 97.5 0.0028 6.1E-08 56.7 13.1 28 75-102 69-96 (272)
165 TIGR00174 miaA tRNA isopenteny 97.5 0.00012 2.6E-09 66.2 4.3 31 81-111 2-32 (287)
166 cd00009 AAA The AAA+ (ATPases 97.4 0.0002 4.3E-09 54.8 4.6 31 79-109 20-53 (151)
167 PTZ00301 uridine kinase; Provi 97.4 0.00011 2.3E-09 63.5 3.4 38 77-114 2-46 (210)
168 COG0572 Udk Uridine kinase [Nu 97.4 0.0002 4.4E-09 62.3 5.1 39 76-114 6-47 (218)
169 PF00485 PRK: Phosphoribulokin 97.4 0.00014 3E-09 61.3 4.0 24 80-103 1-24 (194)
170 PRK06761 hypothetical protein; 97.4 0.00015 3.3E-09 65.4 4.3 32 78-109 3-34 (282)
171 PLN02748 tRNA dimethylallyltra 97.4 0.00014 3.1E-09 69.8 4.3 36 76-111 20-55 (468)
172 PRK15453 phosphoribulokinase; 97.4 0.00036 7.8E-09 63.1 6.7 37 76-112 3-44 (290)
173 PRK05439 pantothenate kinase; 97.4 0.00016 3.4E-09 66.2 4.4 40 75-114 83-129 (311)
174 TIGR03575 selen_PSTK_euk L-ser 97.4 0.00017 3.7E-09 66.7 4.6 34 81-114 2-41 (340)
175 TIGR01650 PD_CobS cobaltochela 97.4 0.00017 3.7E-09 66.3 4.2 30 80-109 66-95 (327)
176 COG2256 MGS1 ATPase related to 97.4 0.00021 4.6E-09 67.1 4.7 54 58-111 14-81 (436)
177 cd01673 dNK Deoxyribonucleosid 97.4 0.00016 3.5E-09 60.3 3.5 28 80-107 1-28 (193)
178 PLN00020 ribulose bisphosphate 97.3 0.00027 5.8E-09 66.2 5.0 41 76-116 146-188 (413)
179 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0002 4.3E-09 70.4 4.2 40 69-110 216-255 (802)
180 PRK07429 phosphoribulokinase; 97.3 0.00026 5.5E-09 65.1 4.8 40 74-113 4-46 (327)
181 PRK10416 signal recognition pa 97.3 0.0023 4.9E-08 58.7 10.9 27 76-102 112-138 (318)
182 PHA02575 1 deoxynucleoside mon 97.3 0.00021 4.7E-09 62.4 3.7 38 79-117 1-39 (227)
183 TIGR02640 gas_vesic_GvpN gas v 97.3 0.00028 6.2E-09 62.4 4.5 31 79-109 22-52 (262)
184 cd00544 CobU Adenosylcobinamid 97.3 0.0052 1.1E-07 51.3 11.6 79 81-167 2-84 (169)
185 PRK09270 nucleoside triphospha 97.3 0.0002 4.3E-09 62.0 3.1 30 74-103 29-58 (229)
186 COG1223 Predicted ATPase (AAA+ 97.3 0.0033 7.1E-08 56.7 10.8 117 78-215 151-278 (368)
187 PRK05342 clpX ATP-dependent pr 97.2 0.00029 6.4E-09 66.7 4.3 32 79-110 109-140 (412)
188 cd02025 PanK Pantothenate kina 97.2 0.00025 5.5E-09 61.4 3.5 33 81-113 2-41 (220)
189 KOG0730 AAA+-type ATPase [Post 97.2 0.00061 1.3E-08 67.3 6.5 45 71-117 463-509 (693)
190 TIGR00554 panK_bact pantothena 97.2 0.00035 7.6E-09 63.2 4.4 39 75-113 59-104 (290)
191 PRK13342 recombination factor 97.2 0.00033 7.2E-09 65.9 4.4 33 78-110 36-68 (413)
192 KOG0738 AAA+-type ATPase [Post 97.2 0.0018 3.8E-08 61.0 9.0 132 81-222 248-383 (491)
193 PRK12723 flagellar biosynthesi 97.2 0.0025 5.5E-08 59.9 10.2 27 77-103 173-199 (388)
194 COG3709 Uncharacterized compon 97.2 0.011 2.4E-07 49.7 12.6 52 163-214 123-182 (192)
195 PRK08099 bifunctional DNA-bind 97.2 0.0004 8.6E-09 65.5 4.6 32 77-108 218-249 (399)
196 PF13173 AAA_14: AAA domain 97.2 0.00048 1E-08 54.1 4.3 34 79-112 3-40 (128)
197 TIGR01526 nadR_NMN_Atrans nico 97.2 0.0004 8.8E-09 63.6 4.4 30 78-107 162-191 (325)
198 PRK03992 proteasome-activating 97.2 0.00043 9.4E-09 64.8 4.7 38 78-115 165-204 (389)
199 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0012 2.7E-08 65.0 7.8 39 79-117 546-586 (802)
200 CHL00195 ycf46 Ycf46; Provisio 97.2 0.00045 9.7E-09 66.8 4.8 32 78-109 259-290 (489)
201 KOG0739 AAA+-type ATPase [Post 97.2 0.0023 5E-08 58.6 8.8 38 80-117 168-207 (439)
202 COG0466 Lon ATP-dependent Lon 97.2 0.00043 9.3E-09 69.1 4.5 61 74-135 346-416 (782)
203 COG2019 AdkA Archaeal adenylat 97.1 0.00048 1E-08 57.9 4.1 37 78-114 4-41 (189)
204 PHA02244 ATPase-like protein 97.1 0.00047 1E-08 64.5 4.3 36 78-113 119-154 (383)
205 KOG0744 AAA+-type ATPase [Post 97.1 0.00032 6.9E-09 64.6 3.1 28 78-105 177-204 (423)
206 TIGR00382 clpX endopeptidase C 97.1 0.00047 1E-08 65.3 4.4 31 79-109 117-147 (413)
207 PF05729 NACHT: NACHT domain 97.1 0.00046 9.9E-09 54.9 3.5 23 80-102 2-24 (166)
208 PF01591 6PF2K: 6-phosphofruct 97.1 0.0016 3.4E-08 56.9 7.1 42 76-117 10-56 (222)
209 PRK15455 PrkA family serine pr 97.1 0.00033 7.1E-09 68.9 3.1 50 49-103 79-128 (644)
210 cd00071 GMPK Guanosine monopho 97.1 0.00041 8.9E-09 55.6 3.1 23 81-103 2-24 (137)
211 PF03266 NTPase_1: NTPase; In 97.1 0.00047 1E-08 57.5 3.6 26 80-105 1-29 (168)
212 PF13191 AAA_16: AAA ATPase do 97.1 0.00056 1.2E-08 55.7 3.9 43 52-102 6-48 (185)
213 TIGR01242 26Sp45 26S proteasom 97.1 0.00071 1.5E-08 62.5 4.9 32 78-109 156-187 (364)
214 PRK00771 signal recognition pa 97.1 0.0083 1.8E-07 57.3 12.1 27 76-102 93-119 (437)
215 COG1222 RPT1 ATP-dependent 26S 97.1 0.0011 2.3E-08 61.7 5.8 55 71-127 180-236 (406)
216 TIGR02928 orc1/cdc6 family rep 97.0 0.00071 1.5E-08 61.8 4.5 59 34-102 6-64 (365)
217 PLN02348 phosphoribulokinase 97.0 0.00074 1.6E-08 63.5 4.6 28 76-103 47-74 (395)
218 TIGR00635 ruvB Holliday juncti 97.0 0.00086 1.9E-08 59.9 4.9 29 78-106 30-58 (305)
219 PTZ00454 26S protease regulato 97.0 0.00077 1.7E-08 63.5 4.7 32 78-109 179-210 (398)
220 PF01695 IstB_IS21: IstB-like 97.0 0.00087 1.9E-08 56.2 4.4 39 77-115 46-89 (178)
221 COG1428 Deoxynucleoside kinase 97.0 0.00072 1.6E-08 58.6 3.9 31 78-108 4-34 (216)
222 PRK14962 DNA polymerase III su 97.0 0.00076 1.7E-08 64.9 4.4 26 79-104 37-62 (472)
223 PLN02796 D-glycerate 3-kinase 97.0 0.00095 2.1E-08 61.9 4.9 38 76-113 98-140 (347)
224 TIGR02655 circ_KaiC circadian 97.0 0.0034 7.3E-08 60.5 8.6 118 71-191 256-390 (484)
225 PRK05642 DNA replication initi 97.0 0.0039 8.4E-08 54.3 8.3 35 79-113 46-85 (234)
226 COG0324 MiaA tRNA delta(2)-iso 97.0 0.001 2.2E-08 60.7 4.8 35 78-112 3-37 (308)
227 COG4639 Predicted kinase [Gene 97.0 0.0043 9.3E-08 51.6 7.9 32 79-112 3-34 (168)
228 PRK14961 DNA polymerase III su 97.0 0.0011 2.4E-08 61.4 5.0 26 79-104 39-64 (363)
229 PF00308 Bac_DnaA: Bacterial d 96.9 0.0029 6.3E-08 54.7 7.3 112 80-214 36-157 (219)
230 PF00910 RNA_helicase: RNA hel 96.9 0.00065 1.4E-08 52.0 2.9 23 81-103 1-23 (107)
231 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0022 4.7E-08 55.0 6.4 38 74-111 16-58 (229)
232 PF06309 Torsin: Torsin; Inte 96.9 0.0011 2.4E-08 53.1 4.2 30 73-102 48-77 (127)
233 PF08433 KTI12: Chromatin asso 96.9 0.00072 1.6E-08 60.6 3.4 24 79-102 2-25 (270)
234 PRK06067 flagellar accessory p 96.9 0.0015 3.2E-08 56.4 5.3 40 73-112 20-64 (234)
235 PF08477 Miro: Miro-like prote 96.9 0.00092 2E-08 50.8 3.5 24 80-103 1-24 (119)
236 PRK05973 replicative DNA helic 96.9 0.002 4.3E-08 56.8 6.0 46 64-110 51-101 (237)
237 PF13245 AAA_19: Part of AAA d 96.9 0.0011 2.4E-08 48.2 3.6 23 80-102 12-35 (76)
238 PTZ00202 tuzin; Provisional 96.9 0.0071 1.5E-07 58.2 10.0 47 52-106 268-314 (550)
239 PF07724 AAA_2: AAA domain (Cd 96.9 0.0012 2.7E-08 55.1 4.4 26 79-104 4-29 (171)
240 cd01124 KaiC KaiC is a circadi 96.9 0.00052 1.1E-08 56.4 2.1 31 81-111 2-37 (187)
241 PRK04195 replication factor C 96.9 0.0011 2.4E-08 63.7 4.5 32 78-109 39-70 (482)
242 PRK00080 ruvB Holliday junctio 96.9 0.0013 2.7E-08 60.0 4.6 30 79-108 52-81 (328)
243 PRK10787 DNA-binding ATP-depen 96.9 0.001 2.2E-08 67.8 4.3 33 77-109 348-380 (784)
244 PF00448 SRP54: SRP54-type pro 96.9 0.0011 2.5E-08 56.5 3.9 32 78-109 1-37 (196)
245 PTZ00361 26 proteosome regulat 96.8 0.0014 2.9E-08 62.7 4.8 32 78-109 217-248 (438)
246 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.00095 2E-08 56.7 3.4 36 77-112 37-77 (226)
247 cd02029 PRK_like Phosphoribulo 96.8 0.0024 5.1E-08 57.5 6.0 35 80-114 1-40 (277)
248 COG1219 ClpX ATP-dependent pro 96.8 0.0013 2.7E-08 60.7 4.3 31 79-109 98-128 (408)
249 TIGR00763 lon ATP-dependent pr 96.8 0.0011 2.4E-08 67.3 4.4 33 77-109 346-378 (775)
250 PRK06526 transposase; Provisio 96.8 0.001 2.2E-08 59.0 3.6 38 77-114 97-139 (254)
251 PRK00411 cdc6 cell division co 96.8 0.0016 3.5E-08 60.1 5.0 57 36-102 23-79 (394)
252 CHL00206 ycf2 Ycf2; Provisiona 96.8 0.0012 2.6E-08 71.9 4.6 35 80-114 1632-1668(2281)
253 PRK13695 putative NTPase; Prov 96.8 0.0012 2.5E-08 54.5 3.6 24 79-102 1-24 (174)
254 PRK07003 DNA polymerase III su 96.8 0.0046 9.9E-08 62.7 8.1 28 78-105 38-65 (830)
255 cd04163 Era Era subfamily. Er 96.8 0.0013 2.8E-08 51.5 3.4 25 77-101 2-26 (168)
256 KOG2004 Mitochondrial ATP-depe 96.8 0.001 2.2E-08 66.6 3.4 39 74-112 434-474 (906)
257 CHL00176 ftsH cell division pr 96.8 0.0017 3.6E-08 64.8 4.9 32 78-109 216-247 (638)
258 cd04155 Arl3 Arl3 subfamily. 96.8 0.0013 2.7E-08 53.2 3.4 26 76-101 12-37 (173)
259 COG0541 Ffh Signal recognition 96.8 0.046 9.9E-07 52.1 14.1 123 75-213 97-240 (451)
260 PF07726 AAA_3: ATPase family 96.8 0.00094 2E-08 53.8 2.5 29 80-108 1-29 (131)
261 PRK09087 hypothetical protein; 96.8 0.0012 2.6E-08 57.5 3.3 33 79-111 45-77 (226)
262 COG2255 RuvB Holliday junction 96.7 0.0017 3.7E-08 58.9 4.3 34 80-113 54-88 (332)
263 PRK08116 hypothetical protein; 96.7 0.012 2.7E-07 52.4 9.9 36 79-114 115-155 (268)
264 PRK08903 DnaA regulatory inact 96.7 0.0015 3.3E-08 56.0 3.8 34 79-112 43-81 (227)
265 TIGR02237 recomb_radB DNA repa 96.7 0.002 4.3E-08 54.4 4.2 40 72-111 6-50 (209)
266 KOG0731 AAA+-type ATPase conta 96.7 0.0013 2.8E-08 66.4 3.5 36 80-115 346-383 (774)
267 PLN02318 phosphoribulokinase/u 96.7 0.0018 4E-08 64.0 4.5 36 77-112 64-100 (656)
268 TIGR03015 pepcterm_ATPase puta 96.7 0.0016 3.5E-08 56.7 3.7 25 79-103 44-68 (269)
269 PRK06620 hypothetical protein; 96.7 0.0014 3E-08 56.6 3.2 29 80-108 46-74 (214)
270 COG0464 SpoVK ATPases of the A 96.7 0.0019 4.1E-08 62.0 4.4 37 79-115 277-315 (494)
271 cd01120 RecA-like_NTPases RecA 96.7 0.0015 3.3E-08 51.4 3.1 23 80-102 1-23 (165)
272 COG0714 MoxR-like ATPases [Gen 96.7 0.0018 4E-08 58.9 4.1 30 79-108 44-73 (329)
273 PF10662 PduV-EutP: Ethanolami 96.7 0.0015 3.2E-08 53.4 3.1 23 79-101 2-24 (143)
274 PRK12377 putative replication 96.7 0.0018 3.9E-08 57.4 3.9 36 79-114 102-142 (248)
275 PRK14956 DNA polymerase III su 96.7 0.0017 3.7E-08 62.6 3.9 27 79-105 41-67 (484)
276 PRK08181 transposase; Validate 96.7 0.0026 5.6E-08 57.0 4.8 39 77-115 105-148 (269)
277 PRK14957 DNA polymerase III su 96.7 0.0018 4E-08 63.4 4.2 25 80-104 40-64 (546)
278 PLN03046 D-glycerate 3-kinase; 96.7 0.0022 4.9E-08 61.0 4.6 38 76-113 210-252 (460)
279 TIGR01243 CDC48 AAA family ATP 96.7 0.0021 4.5E-08 64.9 4.7 37 79-115 488-526 (733)
280 PF06745 KaiC: KaiC; InterPro 96.6 0.00092 2E-08 57.3 1.9 63 73-135 14-82 (226)
281 PRK14960 DNA polymerase III su 96.6 0.002 4.4E-08 64.4 4.4 28 78-105 37-64 (702)
282 cd02026 PRK Phosphoribulokinas 96.6 0.0017 3.7E-08 58.1 3.6 33 81-113 2-37 (273)
283 PRK14955 DNA polymerase III su 96.6 0.0023 5E-08 60.0 4.5 26 80-105 40-65 (397)
284 COG1220 HslU ATP-dependent pro 96.6 0.0022 4.7E-08 59.5 4.2 32 78-109 50-81 (444)
285 PF03215 Rad17: Rad17 cell cyc 96.6 0.0023 5.1E-08 62.3 4.6 29 79-107 46-74 (519)
286 PRK14958 DNA polymerase III su 96.6 0.0023 4.9E-08 62.2 4.5 28 78-105 38-65 (509)
287 PRK11034 clpA ATP-dependent Cl 96.6 0.0024 5.3E-08 64.8 4.8 34 75-108 484-518 (758)
288 PRK08533 flagellar accessory p 96.6 0.0016 3.5E-08 56.7 3.1 35 76-110 22-61 (230)
289 PRK09183 transposase/IS protei 96.6 0.0021 4.5E-08 57.0 3.8 37 77-113 101-142 (259)
290 KOG0991 Replication factor C, 96.6 0.014 3E-07 52.0 8.9 26 77-102 47-72 (333)
291 PRK14949 DNA polymerase III su 96.6 0.0022 4.7E-08 65.9 4.4 27 79-105 39-65 (944)
292 PRK12402 replication factor C 96.6 0.0024 5.2E-08 57.4 4.2 24 80-103 38-61 (337)
293 TIGR03689 pup_AAA proteasome A 96.6 0.0026 5.7E-08 61.9 4.6 27 79-105 217-243 (512)
294 TIGR02236 recomb_radA DNA repa 96.6 0.055 1.2E-06 48.8 12.9 40 72-111 89-139 (310)
295 PRK14088 dnaA chromosomal repl 96.6 0.027 5.8E-07 53.8 11.3 35 80-114 132-173 (440)
296 TIGR00101 ureG urease accessor 96.6 0.0025 5.4E-08 54.4 3.9 25 78-102 1-25 (199)
297 PRK09302 circadian clock prote 96.6 0.015 3.3E-07 56.1 9.7 116 74-191 269-400 (509)
298 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.0029 6.4E-08 54.2 4.3 30 72-101 13-42 (235)
299 COG1484 DnaC DNA replication p 96.5 0.0031 6.8E-08 55.9 4.6 39 77-115 104-147 (254)
300 cd04119 RJL RJL (RabJ-Like) su 96.5 0.002 4.4E-08 51.0 3.0 23 79-101 1-23 (168)
301 PF08298 AAA_PrkA: PrkA AAA do 96.5 0.0024 5.2E-08 59.4 3.8 50 49-103 64-113 (358)
302 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.0018 3.8E-08 56.4 2.8 38 74-111 17-59 (237)
303 PRK14969 DNA polymerase III su 96.5 0.0029 6.2E-08 61.7 4.5 27 79-105 39-65 (527)
304 PF01926 MMR_HSR1: 50S ribosom 96.5 0.0024 5.2E-08 48.8 3.2 21 80-100 1-21 (116)
305 cd04138 H_N_K_Ras_like H-Ras/N 96.5 0.0025 5.4E-08 50.2 3.4 23 79-101 2-24 (162)
306 smart00173 RAS Ras subfamily o 96.5 0.0024 5.2E-08 50.9 3.3 23 79-101 1-23 (164)
307 PRK14729 miaA tRNA delta(2)-is 96.5 0.0035 7.6E-08 57.1 4.7 32 79-111 5-36 (300)
308 PRK06893 DNA replication initi 96.5 0.0025 5.5E-08 55.2 3.6 32 79-110 40-76 (229)
309 PHA03132 thymidine kinase; Pro 96.5 0.005 1.1E-07 60.7 6.0 58 77-134 256-313 (580)
310 PRK12422 chromosomal replicati 96.5 0.021 4.5E-07 54.7 10.1 23 80-102 143-165 (445)
311 TIGR02639 ClpA ATP-dependent C 96.5 0.0034 7.3E-08 63.4 4.9 38 75-112 480-520 (731)
312 cd04164 trmE TrmE (MnmE, ThdF, 96.5 0.0026 5.6E-08 49.7 3.3 24 78-101 1-24 (157)
313 smart00175 RAB Rab subfamily o 96.5 0.0026 5.6E-08 50.4 3.2 23 79-101 1-23 (164)
314 TIGR01243 CDC48 AAA family ATP 96.4 0.0032 7E-08 63.5 4.5 32 78-109 212-243 (733)
315 PRK08084 DNA replication initi 96.4 0.0026 5.6E-08 55.4 3.3 33 79-111 46-83 (235)
316 PRK06921 hypothetical protein; 96.4 0.0043 9.3E-08 55.3 4.7 25 78-102 117-141 (266)
317 TIGR02655 circ_KaiC circadian 96.4 0.0017 3.8E-08 62.5 2.4 39 72-110 15-59 (484)
318 cd01394 radB RadB. The archaea 96.4 0.0041 8.9E-08 52.9 4.4 39 73-111 14-57 (218)
319 PRK06645 DNA polymerase III su 96.4 0.003 6.4E-08 61.4 3.9 28 78-105 43-70 (507)
320 cd04136 Rap_like Rap-like subf 96.4 0.0032 6.9E-08 49.9 3.5 23 79-101 2-24 (163)
321 COG0467 RAD55 RecA-superfamily 96.4 0.0015 3.3E-08 57.3 1.8 38 74-111 19-61 (260)
322 PF01078 Mg_chelatase: Magnesi 96.4 0.0029 6.2E-08 54.7 3.4 24 79-102 23-46 (206)
323 PRK09435 membrane ATPase/prote 96.4 0.0034 7.4E-08 57.9 4.1 27 76-102 54-80 (332)
324 KOG0735 AAA+-type ATPase [Post 96.4 0.012 2.7E-07 59.1 8.1 41 78-118 701-743 (952)
325 PRK07994 DNA polymerase III su 96.4 0.0034 7.3E-08 62.7 4.3 26 80-105 40-65 (647)
326 PRK14974 cell division protein 96.4 0.0034 7.4E-08 58.0 4.0 39 76-114 138-180 (336)
327 PRK10646 ADP-binding protein; 96.4 0.0043 9.4E-08 51.2 4.2 45 52-105 11-55 (153)
328 cd01862 Rab7 Rab7 subfamily. 96.4 0.0029 6.2E-08 50.7 3.1 23 79-101 1-23 (172)
329 PRK10733 hflB ATP-dependent me 96.4 0.0043 9.3E-08 61.9 4.9 30 81-110 188-217 (644)
330 PRK00149 dnaA chromosomal repl 96.4 0.019 4.2E-07 54.6 9.2 34 80-113 150-190 (450)
331 cd04113 Rab4 Rab4 subfamily. 96.4 0.0029 6.4E-08 50.4 3.1 22 79-100 1-22 (161)
332 PLN03025 replication factor C 96.4 0.0035 7.5E-08 56.9 3.9 23 80-102 36-58 (319)
333 PRK14963 DNA polymerase III su 96.4 0.0033 7.1E-08 61.1 3.9 27 78-104 36-62 (504)
334 PF13479 AAA_24: AAA domain 96.4 0.003 6.4E-08 54.2 3.2 31 77-110 2-32 (213)
335 COG5192 BMS1 GTP-binding prote 96.4 0.0049 1.1E-07 60.6 4.9 42 62-103 53-94 (1077)
336 cd00157 Rho Rho (Ras homology) 96.3 0.0033 7.3E-08 50.2 3.3 23 79-101 1-23 (171)
337 TIGR00231 small_GTP small GTP- 96.3 0.0038 8.1E-08 48.0 3.4 24 79-102 2-25 (161)
338 KOG0742 AAA+-type ATPase [Post 96.3 0.017 3.8E-07 55.0 8.3 29 79-107 385-413 (630)
339 PRK04328 hypothetical protein; 96.3 0.0021 4.5E-08 56.6 2.1 39 73-111 18-61 (249)
340 cd01130 VirB11-like_ATPase Typ 96.3 0.0037 8E-08 52.3 3.6 27 77-103 24-50 (186)
341 cd00154 Rab Rab family. Rab G 96.3 0.0033 7.1E-08 48.8 3.0 23 79-101 1-23 (159)
342 cd04139 RalA_RalB RalA/RalB su 96.3 0.0034 7.4E-08 49.6 3.2 22 79-100 1-22 (164)
343 KOG1533 Predicted GTPase [Gene 96.3 0.002 4.3E-08 57.0 1.9 22 81-102 5-26 (290)
344 cd01131 PilT Pilus retraction 96.3 0.0038 8.3E-08 52.9 3.6 24 80-103 3-26 (198)
345 PRK10751 molybdopterin-guanine 96.3 0.0037 8E-08 52.6 3.3 27 77-103 5-31 (173)
346 PRK04296 thymidine kinase; Pro 96.3 0.0041 8.9E-08 52.5 3.5 25 78-102 2-26 (190)
347 PF06068 TIP49: TIP49 C-termin 96.3 0.0021 4.5E-08 60.2 1.9 41 77-117 49-93 (398)
348 TIGR01425 SRP54_euk signal rec 96.3 0.007 1.5E-07 57.7 5.5 27 76-102 98-124 (429)
349 PRK13341 recombination factor 96.3 0.0048 1E-07 62.4 4.6 35 78-112 52-86 (725)
350 COG1855 ATPase (PilT family) [ 96.3 0.0034 7.3E-08 60.2 3.2 24 80-103 265-288 (604)
351 cd04145 M_R_Ras_like M-Ras/R-R 96.3 0.0046 9.9E-08 49.1 3.6 24 78-101 2-25 (164)
352 COG1224 TIP49 DNA helicase TIP 96.3 0.0055 1.2E-07 57.3 4.5 42 76-117 63-108 (450)
353 TIGR02688 conserved hypothetic 96.3 0.0055 1.2E-07 58.4 4.7 39 77-116 208-250 (449)
354 PF01443 Viral_helicase1: Vira 96.3 0.003 6.6E-08 53.7 2.7 22 81-102 1-22 (234)
355 COG0378 HypB Ni2+-binding GTPa 96.2 0.0043 9.4E-08 53.2 3.6 38 76-114 10-52 (202)
356 PRK14722 flhF flagellar biosyn 96.2 0.0043 9.3E-08 58.2 3.9 28 75-102 134-161 (374)
357 cd04177 RSR1 RSR1 subgroup. R 96.2 0.0042 9.2E-08 50.1 3.4 23 79-101 2-24 (168)
358 PHA02544 44 clamp loader, smal 96.2 0.0052 1.1E-07 55.1 4.2 29 79-107 44-72 (316)
359 cd00876 Ras Ras family. The R 96.2 0.0036 7.8E-08 49.2 2.9 22 80-101 1-22 (160)
360 PRK11823 DNA repair protein Ra 96.2 0.0098 2.1E-07 56.9 6.3 41 72-112 74-119 (446)
361 PF08303 tRNA_lig_kinase: tRNA 96.2 0.0041 9E-08 52.0 3.2 32 81-112 2-34 (168)
362 PF02367 UPF0079: Uncharacteri 96.2 0.0063 1.4E-07 48.5 4.1 29 77-105 14-42 (123)
363 PF00005 ABC_tran: ABC transpo 96.2 0.0038 8.3E-08 48.8 2.9 27 77-103 10-36 (137)
364 PRK07764 DNA polymerase III su 96.2 0.051 1.1E-06 55.9 11.6 26 79-104 38-63 (824)
365 PRK06835 DNA replication prote 96.2 0.0053 1.2E-07 56.5 4.2 36 79-114 184-224 (329)
366 PF04665 Pox_A32: Poxvirus A32 96.2 0.0063 1.4E-07 53.8 4.4 26 77-102 12-37 (241)
367 PRK08691 DNA polymerase III su 96.2 0.005 1.1E-07 61.9 4.2 28 78-105 38-65 (709)
368 cd01867 Rab8_Rab10_Rab13_like 96.2 0.0048 1E-07 49.8 3.4 24 78-101 3-26 (167)
369 PRK07952 DNA replication prote 96.2 0.0053 1.2E-07 54.2 3.9 35 80-114 101-140 (244)
370 KOG1969 DNA replication checkp 96.2 0.0062 1.3E-07 61.2 4.7 31 79-109 327-357 (877)
371 cd01895 EngA2 EngA2 subfamily. 96.2 0.0043 9.3E-08 49.1 3.0 24 78-101 2-25 (174)
372 cd04137 RheB Rheb (Ras Homolog 96.2 0.0048 1E-07 50.2 3.3 23 79-101 2-24 (180)
373 cd00820 PEPCK_HprK Phosphoenol 96.2 0.0056 1.2E-07 47.6 3.4 23 77-99 14-36 (107)
374 PRK14951 DNA polymerase III su 96.2 0.0062 1.3E-07 60.5 4.6 26 79-104 39-64 (618)
375 PRK13768 GTPase; Provisional 96.1 0.0052 1.1E-07 54.3 3.7 24 79-102 3-26 (253)
376 TIGR03499 FlhF flagellar biosy 96.1 0.0057 1.2E-07 54.9 3.9 26 77-102 193-218 (282)
377 cd03264 ABC_drug_resistance_li 96.1 0.0047 1E-07 52.3 3.2 26 76-102 24-49 (211)
378 TIGR03345 VI_ClpV1 type VI sec 96.1 0.0058 1.3E-07 62.9 4.4 40 74-113 591-636 (852)
379 TIGR00750 lao LAO/AO transport 96.1 0.006 1.3E-07 55.1 4.0 27 76-102 32-58 (300)
380 PRK09169 hypothetical protein; 96.1 0.0067 1.4E-07 66.8 4.9 66 78-151 2110-2176(2316)
381 cd00879 Sar1 Sar1 subfamily. 96.1 0.0055 1.2E-07 50.4 3.5 25 76-100 17-41 (190)
382 PF13086 AAA_11: AAA domain; P 96.1 0.0055 1.2E-07 51.2 3.4 23 80-102 19-41 (236)
383 TIGR00073 hypB hydrogenase acc 96.1 0.0064 1.4E-07 51.7 3.8 27 77-103 21-47 (207)
384 cd01860 Rab5_related Rab5-rela 96.1 0.0055 1.2E-07 48.7 3.3 23 79-101 2-24 (163)
385 cd04115 Rab33B_Rab33A Rab33B/R 96.1 0.006 1.3E-07 49.4 3.5 24 78-101 2-25 (170)
386 cd01864 Rab19 Rab19 subfamily. 96.1 0.0059 1.3E-07 49.0 3.4 24 77-100 2-25 (165)
387 PRK10463 hydrogenase nickel in 96.1 0.0067 1.5E-07 55.0 4.1 27 76-102 102-128 (290)
388 COG4185 Uncharacterized protei 96.1 0.0075 1.6E-07 50.6 4.0 93 79-173 3-115 (187)
389 CHL00095 clpC Clp protease ATP 96.1 0.0079 1.7E-07 61.6 5.0 24 79-102 201-224 (821)
390 smart00178 SAR Sar1p-like memb 96.1 0.0061 1.3E-07 50.5 3.5 27 75-101 14-40 (184)
391 COG1126 GlnQ ABC-type polar am 96.1 0.0056 1.2E-07 53.6 3.3 26 75-100 25-50 (240)
392 PRK11331 5-methylcytosine-spec 96.1 0.0051 1.1E-07 59.0 3.4 26 78-103 194-219 (459)
393 PRK09361 radB DNA repair and r 96.0 0.0085 1.8E-07 51.2 4.5 38 73-110 18-60 (225)
394 cd04123 Rab21 Rab21 subfamily. 96.0 0.0059 1.3E-07 48.0 3.2 23 79-101 1-23 (162)
395 PRK05563 DNA polymerase III su 96.0 0.008 1.7E-07 59.1 4.8 29 78-106 38-66 (559)
396 KOG3877 NADH:ubiquinone oxidor 96.0 0.0086 1.9E-07 54.3 4.6 37 77-113 70-109 (393)
397 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.007 1.5E-07 53.6 4.0 38 73-110 31-73 (259)
398 PRK12323 DNA polymerase III su 96.0 0.0069 1.5E-07 60.6 4.3 27 78-104 38-64 (700)
399 cd04124 RabL2 RabL2 subfamily. 96.0 0.0061 1.3E-07 49.0 3.3 22 79-100 1-22 (161)
400 cd04160 Arfrp1 Arfrp1 subfamil 96.0 0.0055 1.2E-07 49.0 3.0 23 80-102 1-23 (167)
401 cd01918 HprK_C HprK/P, the bif 96.0 0.0092 2E-07 49.1 4.3 30 78-108 14-43 (149)
402 cd01865 Rab3 Rab3 subfamily. 96.0 0.0061 1.3E-07 49.1 3.2 23 79-101 2-24 (165)
403 cd04154 Arl2 Arl2 subfamily. 96.0 0.0065 1.4E-07 49.4 3.4 25 77-101 13-37 (173)
404 KOG0736 Peroxisome assembly fa 96.0 0.029 6.4E-07 56.8 8.5 39 79-117 706-746 (953)
405 PF00025 Arf: ADP-ribosylation 96.0 0.007 1.5E-07 50.0 3.6 26 76-101 12-37 (175)
406 cd01983 Fer4_NifH The Fer4_Nif 96.0 0.01 2.3E-07 42.4 4.1 30 81-110 2-34 (99)
407 PRK14490 putative bifunctional 96.0 0.0069 1.5E-07 56.3 3.9 28 77-104 4-31 (369)
408 cd03292 ABC_FtsE_transporter F 96.0 0.0066 1.4E-07 51.3 3.5 27 76-102 25-51 (214)
409 TIGR01166 cbiO cobalt transpor 96.0 0.0068 1.5E-07 50.5 3.5 27 76-102 16-42 (190)
410 PRK10867 signal recognition pa 96.0 0.0075 1.6E-07 57.6 4.1 27 76-102 98-124 (433)
411 PF03668 ATP_bind_2: P-loop AT 96.0 0.14 3.1E-06 46.3 12.1 28 80-108 3-30 (284)
412 KOG0734 AAA+-type ATPase conta 96.0 0.037 7.9E-07 54.3 8.7 32 78-109 337-368 (752)
413 TIGR01618 phage_P_loop phage n 96.0 0.0063 1.4E-07 53.1 3.3 31 78-110 12-42 (220)
414 TIGR00960 3a0501s02 Type II (G 96.0 0.0069 1.5E-07 51.4 3.4 27 76-102 27-53 (216)
415 cd03301 ABC_MalK_N The N-termi 96.0 0.0072 1.6E-07 51.1 3.5 27 76-102 24-50 (213)
416 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.9 0.0071 1.5E-07 51.3 3.5 27 76-102 28-54 (218)
417 COG1100 GTPase SAR1 and relate 95.9 0.0058 1.2E-07 51.3 2.9 24 79-102 6-29 (219)
418 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.9 0.0073 1.6E-07 48.4 3.4 23 79-101 3-25 (166)
419 PRK14954 DNA polymerase III su 95.9 0.0088 1.9E-07 59.5 4.6 27 79-105 39-65 (620)
420 KOG0745 Putative ATP-dependent 95.9 0.0079 1.7E-07 57.4 4.0 31 79-109 227-257 (564)
421 cd04135 Tc10 TC10 subfamily. 95.9 0.0069 1.5E-07 48.8 3.2 23 79-101 1-23 (174)
422 TIGR02397 dnaX_nterm DNA polym 95.9 0.01 2.3E-07 53.8 4.7 27 78-104 36-62 (355)
423 cd04159 Arl10_like Arl10-like 95.9 0.0061 1.3E-07 47.4 2.8 21 81-101 2-22 (159)
424 COG3911 Predicted ATPase [Gene 95.9 0.0078 1.7E-07 50.0 3.4 26 76-101 7-32 (183)
425 PF03308 ArgK: ArgK protein; 95.9 0.0087 1.9E-07 53.5 4.0 27 76-102 27-53 (266)
426 TIGR00959 ffh signal recogniti 95.9 0.0083 1.8E-07 57.2 4.1 27 76-102 97-123 (428)
427 PRK08939 primosomal protein Dn 95.9 0.0081 1.8E-07 54.7 3.9 38 78-115 156-198 (306)
428 PF03205 MobB: Molybdopterin g 95.9 0.0084 1.8E-07 48.4 3.6 23 80-102 2-24 (140)
429 cd03225 ABC_cobalt_CbiO_domain 95.9 0.0078 1.7E-07 50.8 3.5 27 76-102 25-51 (211)
430 PF00931 NB-ARC: NB-ARC domain 95.9 0.0079 1.7E-07 52.7 3.7 25 77-101 18-42 (287)
431 PRK09302 circadian clock prote 95.9 0.049 1.1E-06 52.6 9.5 37 75-111 28-70 (509)
432 PRK13541 cytochrome c biogenes 95.9 0.0079 1.7E-07 50.4 3.5 27 76-102 24-50 (195)
433 TIGR02673 FtsE cell division A 95.9 0.0077 1.7E-07 51.0 3.5 27 76-102 26-52 (214)
434 cd01868 Rab11_like Rab11-like. 95.9 0.0069 1.5E-07 48.4 3.0 23 79-101 4-26 (165)
435 cd01870 RhoA_like RhoA-like su 95.9 0.0075 1.6E-07 48.6 3.2 23 79-101 2-24 (175)
436 cd03262 ABC_HisP_GlnQ_permease 95.9 0.0081 1.8E-07 50.7 3.5 27 76-102 24-50 (213)
437 TIGR00176 mobB molybdopterin-g 95.9 0.0078 1.7E-07 49.4 3.3 22 81-102 2-23 (155)
438 cd01863 Rab18 Rab18 subfamily. 95.9 0.0078 1.7E-07 47.8 3.2 23 79-101 1-23 (161)
439 cd03269 ABC_putative_ATPase Th 95.9 0.0082 1.8E-07 50.7 3.5 27 76-102 24-50 (210)
440 cd01128 rho_factor Transcripti 95.9 0.008 1.7E-07 53.3 3.6 29 76-104 14-42 (249)
441 KOG2028 ATPase related to the 95.9 0.0093 2E-07 56.1 4.1 48 58-105 128-189 (554)
442 cd03219 ABC_Mj1267_LivG_branch 95.9 0.0074 1.6E-07 51.9 3.3 27 76-102 24-50 (236)
443 PRK14087 dnaA chromosomal repl 95.8 0.05 1.1E-06 52.1 9.2 35 80-114 143-184 (450)
444 cd03224 ABC_TM1139_LivF_branch 95.8 0.0083 1.8E-07 51.0 3.5 28 75-102 23-50 (222)
445 cd03256 ABC_PhnC_transporter A 95.8 0.0082 1.8E-07 51.7 3.5 27 76-102 25-51 (241)
446 PRK05339 PEP synthetase regula 95.8 0.075 1.6E-06 47.8 9.7 118 80-216 145-266 (269)
447 cd03261 ABC_Org_Solvent_Resist 95.8 0.0082 1.8E-07 51.7 3.5 27 76-102 24-50 (235)
448 cd04127 Rab27A Rab27a subfamil 95.8 0.008 1.7E-07 48.8 3.3 24 78-101 4-27 (180)
449 cd03116 MobB Molybdenum is an 95.8 0.01 2.2E-07 49.1 3.8 25 79-103 2-26 (159)
450 COG1474 CDC6 Cdc6-related prot 95.8 0.0076 1.6E-07 56.3 3.4 45 52-103 23-67 (366)
451 TIGR03608 L_ocin_972_ABC putat 95.8 0.0084 1.8E-07 50.4 3.4 27 76-102 22-48 (206)
452 PF13189 Cytidylate_kin2: Cyti 95.8 0.012 2.6E-07 49.1 4.3 37 80-117 1-37 (179)
453 cd04114 Rab30 Rab30 subfamily. 95.8 0.0094 2E-07 47.7 3.6 25 77-101 6-30 (169)
454 cd04156 ARLTS1 ARLTS1 subfamil 95.8 0.006 1.3E-07 48.4 2.4 22 80-101 1-22 (160)
455 TIGR02211 LolD_lipo_ex lipopro 95.8 0.0087 1.9E-07 50.9 3.5 27 76-102 29-55 (221)
456 PRK04301 radA DNA repair and r 95.8 0.011 2.3E-07 53.8 4.3 40 72-111 96-146 (317)
457 PRK14950 DNA polymerase III su 95.8 0.011 2.4E-07 58.2 4.7 27 78-104 38-64 (585)
458 cd03263 ABC_subfamily_A The AB 95.8 0.0088 1.9E-07 50.8 3.5 27 76-102 26-52 (220)
459 cd01861 Rab6 Rab6 subfamily. 95.8 0.0082 1.8E-07 47.6 3.1 21 80-100 2-22 (161)
460 CHL00095 clpC Clp protease ATP 95.8 0.01 2.2E-07 60.7 4.5 39 74-112 534-578 (821)
461 cd03259 ABC_Carb_Solutes_like 95.8 0.0091 2E-07 50.5 3.5 27 76-102 24-50 (213)
462 COG0802 Predicted ATPase or ki 95.8 0.012 2.6E-07 48.4 4.0 44 52-104 8-51 (149)
463 PRK14964 DNA polymerase III su 95.8 0.008 1.7E-07 58.2 3.5 26 79-104 36-61 (491)
464 TIGR03598 GTPase_YsxC ribosome 95.8 0.0093 2E-07 49.0 3.4 27 75-101 15-41 (179)
465 cd03229 ABC_Class3 This class 95.8 0.0096 2.1E-07 49.3 3.5 27 76-102 24-50 (178)
466 TIGR02639 ClpA ATP-dependent C 95.8 0.01 2.2E-07 60.0 4.4 25 78-102 203-227 (731)
467 PRK05896 DNA polymerase III su 95.8 0.011 2.5E-07 58.5 4.5 26 79-104 39-64 (605)
468 cd04101 RabL4 RabL4 (Rab-like4 95.8 0.0085 1.8E-07 47.7 3.1 22 79-100 1-22 (164)
469 cd03226 ABC_cobalt_CbiO_domain 95.8 0.0091 2E-07 50.3 3.4 27 76-102 24-50 (205)
470 TIGR02315 ABC_phnC phosphonate 95.8 0.0093 2E-07 51.5 3.5 27 76-102 26-52 (243)
471 KOG1532 GTPase XAB1, interacts 95.8 0.0096 2.1E-07 54.0 3.6 44 72-115 13-61 (366)
472 PF00437 T2SE: Type II/IV secr 95.7 0.01 2.2E-07 52.2 3.8 26 77-102 126-151 (270)
473 TIGR02782 TrbB_P P-type conjug 95.7 0.013 2.7E-07 53.3 4.4 34 79-112 133-171 (299)
474 COG1136 SalX ABC-type antimicr 95.7 0.0095 2.1E-07 52.2 3.5 27 75-101 28-54 (226)
475 cd03260 ABC_PstB_phosphate_tra 95.7 0.0097 2.1E-07 50.9 3.5 27 76-102 24-50 (227)
476 cd03258 ABC_MetN_methionine_tr 95.7 0.0096 2.1E-07 51.1 3.5 27 76-102 29-55 (233)
477 cd03257 ABC_NikE_OppD_transpor 95.7 0.0093 2E-07 50.8 3.4 27 76-102 29-55 (228)
478 PTZ00369 Ras-like protein; Pro 95.7 0.0099 2.1E-07 49.3 3.5 25 77-101 4-28 (189)
479 cd01866 Rab2 Rab2 subfamily. 95.7 0.0095 2.1E-07 48.2 3.3 23 79-101 5-27 (168)
480 PRK11264 putative amino-acid A 95.7 0.0097 2.1E-07 51.6 3.5 27 76-102 27-53 (250)
481 cd03235 ABC_Metallic_Cations A 95.7 0.0089 1.9E-07 50.6 3.2 27 76-102 23-49 (213)
482 cd03296 ABC_CysA_sulfate_impor 95.7 0.0097 2.1E-07 51.4 3.5 27 76-102 26-52 (239)
483 PRK10865 protein disaggregatio 95.7 0.01 2.3E-07 61.0 4.3 39 75-113 594-638 (857)
484 PRK09111 DNA polymerase III su 95.7 0.013 2.7E-07 58.2 4.6 28 78-105 46-73 (598)
485 TIGR03410 urea_trans_UrtE urea 95.7 0.0097 2.1E-07 51.0 3.4 27 76-102 24-50 (230)
486 cd04110 Rab35 Rab35 subfamily. 95.7 0.0097 2.1E-07 49.9 3.4 25 77-101 5-29 (199)
487 cd03232 ABC_PDR_domain2 The pl 95.7 0.0097 2.1E-07 49.9 3.4 26 76-101 31-56 (192)
488 cd03293 ABC_NrtD_SsuB_transpor 95.7 0.0095 2.1E-07 50.8 3.3 27 76-102 28-54 (220)
489 PRK14723 flhF flagellar biosyn 95.7 0.063 1.4E-06 54.7 9.6 26 77-102 184-209 (767)
490 cd04107 Rab32_Rab38 Rab38/Rab3 95.7 0.0088 1.9E-07 50.1 3.1 23 79-101 1-23 (201)
491 cd03247 ABCC_cytochrome_bd The 95.7 0.011 2.3E-07 49.0 3.5 27 76-102 26-52 (178)
492 cd03265 ABC_DrrA DrrA is the A 95.7 0.01 2.2E-07 50.5 3.5 27 76-102 24-50 (220)
493 PRK06305 DNA polymerase III su 95.7 0.014 3.1E-07 55.8 4.9 27 79-105 40-66 (451)
494 cd03114 ArgK-like The function 95.7 0.0097 2.1E-07 48.4 3.2 23 80-102 1-23 (148)
495 TIGR01978 sufC FeS assembly AT 95.7 0.0099 2.1E-07 51.2 3.4 26 76-101 24-49 (243)
496 cd01878 HflX HflX subfamily. 95.7 0.0089 1.9E-07 50.0 3.0 24 78-101 41-64 (204)
497 COG3839 MalK ABC-type sugar tr 95.7 0.0095 2.1E-07 55.1 3.4 27 76-102 27-53 (338)
498 PRK11629 lolD lipoprotein tran 95.7 0.01 2.2E-07 51.1 3.5 27 76-102 33-59 (233)
499 PF00071 Ras: Ras family; Int 95.7 0.011 2.4E-07 47.0 3.4 22 80-101 1-22 (162)
500 cd03218 ABC_YhbG The ABC trans 95.7 0.011 2.3E-07 50.7 3.5 27 76-102 24-50 (232)
No 1
>PLN02674 adenylate kinase
Probab=99.97 E-value=1.3e-29 Score=222.60 Aligned_cols=135 Identities=21% Similarity=0.450 Sum_probs=128.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRD 157 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~ 157 (233)
.++|+|+|||||||+|+|++|+++||++|||+||+||+++..++++|+.+++++++|+++||+++..++.+++.+..+..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~ 110 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK 110 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred eEEE--------------------------E-------------------------------------------------
Q 026804 158 NFIV--------------------------T------------------------------------------------- 162 (233)
Q Consensus 158 GfIL--------------------------V------------------------------------------------- 162 (233)
|||| |
T Consensus 111 g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~ 190 (244)
T PLN02674 111 GFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQ 190 (244)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCcccc
Confidence 9999 0
Q ss_pred ---ecchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHH
Q 026804 163 ---NRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 212 (233)
Q Consensus 163 ---D~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L 212 (233)
|++|++++||+.|++++.||++||+++++++.|||++++++|+++|...|
T Consensus 191 R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 191 RKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 45899999999999999999999999999999999999999999999876
No 2
>PLN02459 probable adenylate kinase
Probab=99.96 E-value=8.5e-29 Score=219.08 Aligned_cols=142 Identities=43% Similarity=0.746 Sum_probs=131.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHcc--C
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG--Y 154 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~--~ 154 (233)
++++|+|+|||||||+|+|+.|+++||++||+++++||+++..++++|+.+++++++|.+|||+++.+++.++|.+. .
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999875 3
Q ss_pred CCCeEEE---------------------E---------------------------------------------------
Q 026804 155 YRDNFIV---------------------T--------------------------------------------------- 162 (233)
Q Consensus 155 ~~~GfIL---------------------V--------------------------------------------------- 162 (233)
+..|||| |
T Consensus 108 ~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~ 187 (261)
T PLN02459 108 GESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPP 187 (261)
T ss_pred CCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCCC
Confidence 4688999 0
Q ss_pred ------------ecchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhhcccc
Q 026804 163 ------------NRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHIN 218 (233)
Q Consensus 163 ------------D~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~~~~~ 218 (233)
|++|++++||+.|++++.||++||+++++++.||+++++++||++|.+.|+.+|-+
T Consensus 188 ~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~~~ 255 (261)
T PLN02459 188 PECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDDED 255 (261)
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhhhh
Confidence 12578999999999999999999999999999999999999999999999998754
No 3
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=206.53 Aligned_cols=140 Identities=20% Similarity=0.390 Sum_probs=131.1
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCC-CChHHHHHHHHHhcCCccchHHHHHHHHHHHHcc
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-RSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG 153 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~-~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~ 153 (233)
+.++.+|||+|+|||||+|+|.+|+++|++.|+|+|||||+++++ +++.|.+|+++|++|.+||.+++..++++.|.+.
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 457789999999999999999999999999999999999999988 9999999999999999999999999999999987
Q ss_pred CCCCeEEE-----------------------E-------------------------ecchHHHHHHHHHHHhccHHHHH
Q 026804 154 YYRDNFIV-----------------------T-------------------------NRGGSLKEKLEAYAELSKPLEDY 185 (233)
Q Consensus 154 ~~~~GfIL-----------------------V-------------------------D~~e~i~~RL~~y~~~~~~l~~~ 185 (233)
...++|++ | |+.+++++|++.|.+.+.|+++|
T Consensus 85 ~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi~~ 164 (195)
T KOG3079|consen 85 GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVIEY 164 (195)
T ss_pred CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHHHH
Confidence 66666777 1 67899999999999999999999
Q ss_pred HHhcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 186 YQKQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 186 Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
|+++|+++.||+++++++|+.++++.+..
T Consensus 165 ~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 165 YEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999999999998863
No 4
>PRK14526 adenylate kinase; Provisional
Probab=99.95 E-value=4.1e-27 Score=202.79 Aligned_cols=137 Identities=26% Similarity=0.445 Sum_probs=129.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
|+|+|+|+|||||||+|+.|++.++++||++|+++|+++..+++.|+.+++++++|.++|++++.+++.++|.+..+..|
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g 80 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDN 80 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999998777788
Q ss_pred EEE---------------------E----------------------------------------------------ecc
Q 026804 159 FIV---------------------T----------------------------------------------------NRG 165 (233)
Q Consensus 159 fIL---------------------V----------------------------------------------------D~~ 165 (233)
||| | |++
T Consensus 81 ~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~ 160 (211)
T PRK14526 81 FILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKE 160 (211)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCCH
Confidence 998 0 468
Q ss_pred hHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhhc
Q 026804 166 GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 166 e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~~ 215 (233)
|++++||+.|++++.||++||+++++++.|||++++++|+++|.+.|+++
T Consensus 161 e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~~ 210 (211)
T PRK14526 161 ESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISKK 210 (211)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999865
No 5
>PRK14528 adenylate kinase; Provisional
Probab=99.95 E-value=1.4e-26 Score=195.12 Aligned_cols=134 Identities=23% Similarity=0.478 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
.+|+|+|||||||||+|+.|+++||++||++++++++++..++++|..++.++++|+++|++++.+++.+++.+..+..|
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999998777788
Q ss_pred EEE--------------------------E-------------------------ecchHHHHHHHHHHHhccHHHHHHH
Q 026804 159 FIV--------------------------T-------------------------NRGGSLKEKLEAYAELSKPLEDYYQ 187 (233)
Q Consensus 159 fIL--------------------------V-------------------------D~~e~i~~RL~~y~~~~~~l~~~Y~ 187 (233)
||| | |++|.+++|+..|.+++.||++||+
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~ 161 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYA 161 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 888 0 6799999999999999999999999
Q ss_pred hcCcEEEEeCCCCHHHHHHHHHHHH
Q 026804 188 KQKKLLEFQVGSAPVETWQGLLTAL 212 (233)
Q Consensus 188 ~~~~l~~Ida~~~~~eV~~~I~~~L 212 (233)
++++++.||+++++++|++.|.+.|
T Consensus 162 ~~~~~~~i~~~~~~~~v~~~~~~~~ 186 (186)
T PRK14528 162 AQKKLSQVNGVGSLEEVTSLIQKEL 186 (186)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHhC
Confidence 9999999999999999999998653
No 6
>PRK14529 adenylate kinase; Provisional
Probab=99.94 E-value=1.8e-26 Score=200.38 Aligned_cols=133 Identities=16% Similarity=0.349 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
|+|+|+|||||||||+|+.|+++|+++|||+++++|+++..++++|+.+++++++|.++|++++.+++.++|.+.. ..|
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~-~~g 79 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG-KNG 79 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC-CCc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999876 789
Q ss_pred EEE--------------------------E--------------------------------------------------
Q 026804 159 FIV--------------------------T-------------------------------------------------- 162 (233)
Q Consensus 159 fIL--------------------------V-------------------------------------------------- 162 (233)
||| |
T Consensus 80 ~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~ 159 (223)
T PRK14529 80 WLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELS 159 (223)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccc
Confidence 999 0
Q ss_pred ----ec-chHHHHHHHHHHHh---ccHHHHHHHh-----cCcEEEEeCCCCHHHHHHHHHHHH
Q 026804 163 ----NR-GGSLKEKLEAYAEL---SKPLEDYYQK-----QKKLLEFQVGSAPVETWQGLLTAL 212 (233)
Q Consensus 163 ----D~-~e~i~~RL~~y~~~---~~~l~~~Y~~-----~~~l~~Ida~~~~~eV~~~I~~~L 212 (233)
|+ +|+|++||+.|.++ +.++++||++ +++++.|||++++++|+++|.+.|
T Consensus 160 ~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 160 TRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred cCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 33 57999999999998 5588999996 788999999999999999999886
No 7
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.94 E-value=2.5e-26 Score=200.18 Aligned_cols=136 Identities=19% Similarity=0.431 Sum_probs=124.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHc--cC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED--GY 154 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~--~~ 154 (233)
.+|+|+|+|||||||||+|+.|+++||++||++|+++|+++..++++|+.+++++++|.++||+++.+++.+++.+ ..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 5688999999999999999999999999999999999999998999999999999999999999999999999987 45
Q ss_pred CCCeEEE---------------------E---------------------------------------------------
Q 026804 155 YRDNFIV---------------------T--------------------------------------------------- 162 (233)
Q Consensus 155 ~~~GfIL---------------------V--------------------------------------------------- 162 (233)
+..|||| |
T Consensus 85 ~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~ 164 (229)
T PTZ00088 85 CFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGC 164 (229)
T ss_pred cCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCccccc
Confidence 5678988 0
Q ss_pred -----------ecchHHHHHHHHHHHhccHHHHHHHhcCc-EEEE---eCCCCHHHHHHHHHHHH
Q 026804 163 -----------NRGGSLKEKLEAYAELSKPLEDYYQKQKK-LLEF---QVGSAPVETWQGLLTAL 212 (233)
Q Consensus 163 -----------D~~e~i~~RL~~y~~~~~~l~~~Y~~~~~-l~~I---da~~~~~eV~~~I~~~L 212 (233)
|++|++++||+.|++++.||++||+++++ ++.| |+.+++++|++.|.+.|
T Consensus 165 ~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 229 (229)
T PTZ00088 165 KGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQRL 229 (229)
T ss_pred CCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhhC
Confidence 11568999999999999999999999999 9888 79999999999998753
No 8
>PRK14531 adenylate kinase; Provisional
Probab=99.94 E-value=3.6e-26 Score=191.60 Aligned_cols=133 Identities=21% Similarity=0.387 Sum_probs=122.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
++|+|+|+|||||||+|+.|+++||++||+++|++|+++..++++|+.++.++.+|..+|++++..++.+++.+. ..+|
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~-~~~g 81 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL-NSGG 81 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-cCCc
Confidence 479999999999999999999999999999999999999999999999999999999999999999999998764 2467
Q ss_pred EEE--------------------------E---------------------ecchHHHHHHHHHHHhccHHHHHHHhcCc
Q 026804 159 FIV--------------------------T---------------------NRGGSLKEKLEAYAELSKPLEDYYQKQKK 191 (233)
Q Consensus 159 fIL--------------------------V---------------------D~~e~i~~RL~~y~~~~~~l~~~Y~~~~~ 191 (233)
||| | |+++.+++|++.|++++.|+++||+++++
T Consensus 82 ~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~ 161 (183)
T PRK14531 82 WLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQRGL 161 (183)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777 0 56788999999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHHH
Q 026804 192 LLEFQVGSAPVETWQGLLTAL 212 (233)
Q Consensus 192 l~~Ida~~~~~eV~~~I~~~L 212 (233)
++.||+++++++|+.+|.+.|
T Consensus 162 ~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 162 LQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred EEEEECCCCHHHHHHHHHHHh
Confidence 999999999999999999876
No 9
>PRK13808 adenylate kinase; Provisional
Probab=99.94 E-value=2.5e-26 Score=209.55 Aligned_cols=137 Identities=20% Similarity=0.377 Sum_probs=128.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
|+|+|+|||||||||+|++|+++||++||+++|+||.++..+++.|..++++|.+|.++||+++..++.++|.+.++..|
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred EEE--------------------------E-------------------------------ecchHHHHHHHHHHHhccH
Q 026804 159 FIV--------------------------T-------------------------------NRGGSLKEKLEAYAELSKP 181 (233)
Q Consensus 159 fIL--------------------------V-------------------------------D~~e~i~~RL~~y~~~~~~ 181 (233)
||| | |++|.+.+|+..|.+++.|
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~P 160 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEP 160 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHH
Confidence 998 0 3567899999999999999
Q ss_pred HHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhhc
Q 026804 182 LEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 182 l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~~ 215 (233)
|++||.+++.++.||+++++++|+++|+..|+..
T Consensus 161 Ll~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~ 194 (333)
T PRK13808 161 LVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAV 194 (333)
T ss_pred HHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999888999999999999999999999753
No 10
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.94 E-value=5e-26 Score=195.05 Aligned_cols=136 Identities=26% Similarity=0.508 Sum_probs=126.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
|+|+|+|+|||||||+|+.|+++||++||+++|++++++..+++.|+.+++++++|..+|++++.+++.+++.+..+.+|
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence 57999999999999999999999999999999999999998999999999999999999999999999999998777678
Q ss_pred EEE--------------------------E--------------------------------------------------
Q 026804 159 FIV--------------------------T-------------------------------------------------- 162 (233)
Q Consensus 159 fIL--------------------------V-------------------------------------------------- 162 (233)
||| |
T Consensus 81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r 160 (215)
T PRK00279 81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQR 160 (215)
T ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCC
Confidence 888 0
Q ss_pred --ecchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 163 --NRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 163 --D~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
|+++.+++||..|++++.++++||++.++++.|||++++++||++|++.|+.
T Consensus 161 ~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 161 ADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999999999999999999864
No 11
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.94 E-value=7.7e-26 Score=193.25 Aligned_cols=133 Identities=27% Similarity=0.533 Sum_probs=123.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccC-CCCe
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY-YRDN 158 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~-~~~G 158 (233)
+|+|+|||||||||+|+.|+++||++||+++|++|+++..++++|..+++++++|..+|++++.+++.++|.+.. ...|
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~ 80 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENG 80 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999998743 3567
Q ss_pred EEE-----------------------E----------------------------------------------------e
Q 026804 159 FIV-----------------------T----------------------------------------------------N 163 (233)
Q Consensus 159 fIL-----------------------V----------------------------------------------------D 163 (233)
||| | |
T Consensus 81 ~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD 160 (210)
T TIGR01351 81 FILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDD 160 (210)
T ss_pred EEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCC
Confidence 887 0 3
Q ss_pred cchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHH
Q 026804 164 RGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 212 (233)
Q Consensus 164 ~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L 212 (233)
+++.+++|++.|++++.++++||+++++++.|||++++++||+.|.+.|
T Consensus 161 ~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 161 TEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 4688999999999999999999999999999999999999999999876
No 12
>PRK14532 adenylate kinase; Provisional
Probab=99.94 E-value=1.6e-25 Score=187.32 Aligned_cols=135 Identities=24% Similarity=0.374 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
|+|+|+|+|||||||+|++|++++|++||+++|++|+++..+++.|+.+++++++|+.+|++++.+++.+++....+.+|
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 80 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGG 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 47999999999999999999999999999999999999988999999999999999999999999999999987777778
Q ss_pred EEE--------------------------E-------------------------ecchHHHHHHHHHHHhccHHHHHHH
Q 026804 159 FIV--------------------------T-------------------------NRGGSLKEKLEAYAELSKPLEDYYQ 187 (233)
Q Consensus 159 fIL--------------------------V-------------------------D~~e~i~~RL~~y~~~~~~l~~~Y~ 187 (233)
||| | |+++.+.+|++.|.+++.+++++|+
T Consensus 81 ~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~ 160 (188)
T PRK14532 81 AIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYA 160 (188)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 0 3456788999999999999999999
Q ss_pred hcCcEEEEeCCCCHHHHHHHHHHHHh
Q 026804 188 KQKKLLEFQVGSAPVETWQGLLTALH 213 (233)
Q Consensus 188 ~~~~l~~Ida~~~~~eV~~~I~~~L~ 213 (233)
+.+.++.||+++++++|+++|.+.|+
T Consensus 161 ~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 161 GQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred hcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 88889999999999999999999885
No 13
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.94 E-value=8.4e-26 Score=190.02 Aligned_cols=129 Identities=28% Similarity=0.554 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
|+|+|+|||||||||+|+.|+++++++|||+++++|..+...+++|+.++.++++|++||+++++.++.+++.+.+|..|
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~ 80 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG 80 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999887778
Q ss_pred EEEE------------------------------------------------ecchHHHHHHHHHHHhccHHHHHHHhcC
Q 026804 159 FIVT------------------------------------------------NRGGSLKEKLEAYAELSKPLEDYYQKQK 190 (233)
Q Consensus 159 fILV------------------------------------------------D~~e~i~~RL~~y~~~~~~l~~~Y~~~~ 190 (233)
||+. |+++.+++|+..|.+++.|+.+||.
T Consensus 81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli~~y~--- 157 (178)
T COG0563 81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLIEYYS--- 157 (178)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHHhcccchhhhhe---
Confidence 9981 4689999999999999999999999
Q ss_pred cEEEEeCCCCHHHHHHHHHHHH
Q 026804 191 KLLEFQVGSAPVETWQGLLTAL 212 (233)
Q Consensus 191 ~l~~Ida~~~~~eV~~~I~~~L 212 (233)
+.||+.+++++|++++.+.+
T Consensus 158 --~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 158 --VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred --eeccCCCCHHHHHHHHHHhh
Confidence 89999999999999998876
No 14
>PRK02496 adk adenylate kinase; Provisional
Probab=99.93 E-value=4.4e-25 Score=184.27 Aligned_cols=136 Identities=27% Similarity=0.481 Sum_probs=126.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRD 157 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~ 157 (233)
+++|+|+|+|||||||+|+.|+++||++++++++++++.+..++++|..++.++.+|..+|++++..++.+++.+.++..
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~ 80 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAAN 80 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccC
Confidence 36899999999999999999999999999999999999998899999999999999999999999999999998877778
Q ss_pred eEEE--------------------------E---------------------ecchHHHHHHHHHHHhccHHHHHHHhcC
Q 026804 158 NFIV--------------------------T---------------------NRGGSLKEKLEAYAELSKPLEDYYQKQK 190 (233)
Q Consensus 158 GfIL--------------------------V---------------------D~~e~i~~RL~~y~~~~~~l~~~Y~~~~ 190 (233)
|||| | |+++.+++|++.|.+++.|+++||++++
T Consensus 81 g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~ 160 (184)
T PRK02496 81 GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQ 160 (184)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888 0 4568899999999999999999999888
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHh
Q 026804 191 KLLEFQVGSAPVETWQGLLTALH 213 (233)
Q Consensus 191 ~l~~Ida~~~~~eV~~~I~~~L~ 213 (233)
.++.||+++++++|+++|.+.|.
T Consensus 161 ~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 161 KLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC
Confidence 89999999999999999998874
No 15
>PRK14527 adenylate kinase; Provisional
Probab=99.93 E-value=1.3e-24 Score=182.95 Aligned_cols=135 Identities=24% Similarity=0.420 Sum_probs=124.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~ 156 (233)
++..|+|+|||||||||+|+.|+++||++++++++++++++..+++++..++.++.+|..+|++++..++.+++.+..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~- 83 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP- 83 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC-
Confidence 5678999999999999999999999999999999999999888899999999999999999999999999999987554
Q ss_pred CeEEE--------------------------E-------------------------ecchHHHHHHHHHHHhccHHHHH
Q 026804 157 DNFIV--------------------------T-------------------------NRGGSLKEKLEAYAELSKPLEDY 185 (233)
Q Consensus 157 ~GfIL--------------------------V-------------------------D~~e~i~~RL~~y~~~~~~l~~~ 185 (233)
.+||| | |+++.+++|++.|.+++.||++|
T Consensus 84 ~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~ 163 (191)
T PRK14527 84 VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDY 163 (191)
T ss_pred CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 45776 0 56789999999999999999999
Q ss_pred HHhcCcEEEEeCCCCHHHHHHHHHHHH
Q 026804 186 YQKQKKLLEFQVGSAPVETWQGLLTAL 212 (233)
Q Consensus 186 Y~~~~~l~~Ida~~~~~eV~~~I~~~L 212 (233)
|++++.++.|||++++++|+++|++.|
T Consensus 164 y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 164 YEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 999999999999999999999999876
No 16
>PLN02200 adenylate kinase family protein
Probab=99.92 E-value=2.3e-24 Score=188.24 Aligned_cols=140 Identities=19% Similarity=0.376 Sum_probs=126.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~ 155 (233)
..+++|+|+|+|||||||+|+.|++++|++||+++|++|+++...++.|..+.+++++|+.+|++++.+++.+++....
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~- 119 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD- 119 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-
Confidence 3468899999999999999999999999999999999999998889999999999999999999999999999988643
Q ss_pred CCeEEE-----------------------E-----------------------ecchHHHHHHHHHHHhccHHHHHHHhc
Q 026804 156 RDNFIV-----------------------T-----------------------NRGGSLKEKLEAYAELSKPLEDYYQKQ 189 (233)
Q Consensus 156 ~~GfIL-----------------------V-----------------------D~~e~i~~RL~~y~~~~~~l~~~Y~~~ 189 (233)
..|||| | |+.+.+++|++.|.+++.++++||+++
T Consensus 120 ~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~ 199 (234)
T PLN02200 120 NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKK 199 (234)
T ss_pred CCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777 0 456888999999999999999999988
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHHhhcc
Q 026804 190 KKLLEFQVGSAPVETWQGLLTALHLQH 216 (233)
Q Consensus 190 ~~l~~Ida~~~~~eV~~~I~~~L~~~~ 216 (233)
+.++.|||++++++|++.|++.+..-.
T Consensus 200 ~~~~~IDa~~~~eeV~~~v~~~l~~~~ 226 (234)
T PLN02200 200 GKLYTINAVGTVDEIFEQVRPIFAACE 226 (234)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 889999999999999999999987643
No 17
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.92 E-value=5.5e-24 Score=176.70 Aligned_cols=132 Identities=16% Similarity=0.330 Sum_probs=119.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCeE
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDNF 159 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~Gf 159 (233)
.|+|+|+|||||||+|+.|++++|++||+++|++++++..+++.|+.+++++.+|..+|++++.+++.+++.+.. ..+|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~~ 79 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG-SKKF 79 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC-CCcE
Confidence 478999999999999999999999999999999999998888999999999999999999999999999887654 5667
Q ss_pred EE--------------------------E------------------------ecchHHHHHHHHHHHhccHHHHHHHhc
Q 026804 160 IV--------------------------T------------------------NRGGSLKEKLEAYAELSKPLEDYYQKQ 189 (233)
Q Consensus 160 IL--------------------------V------------------------D~~e~i~~RL~~y~~~~~~l~~~Y~~~ 189 (233)
|| | |+.+.+++|+..|.+...++.++|++.
T Consensus 80 vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~ 159 (183)
T TIGR01359 80 LIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENK 159 (183)
T ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76 0 246789999999999999999999988
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHH
Q 026804 190 KKLLEFQVGSAPVETWQGLLTAL 212 (233)
Q Consensus 190 ~~l~~Ida~~~~~eV~~~I~~~L 212 (233)
+.++.||+++++++|+++|.+.|
T Consensus 160 ~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 160 GKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh
Confidence 88999999999999999999876
No 18
>PRK14530 adenylate kinase; Provisional
Probab=99.91 E-value=1.4e-23 Score=179.94 Aligned_cols=133 Identities=20% Similarity=0.405 Sum_probs=115.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC-----CCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHc
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-----SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED 152 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i-----~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~ 152 (233)
+.+|+|+|+|||||||+|+.|+++||++||+++++++++. ..++..|. ++.++.+|..+|++++.+++.+.+.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999886 33455664 77889999999999999999888764
Q ss_pred cCCCCeEEE------------------------E----------------------------------------------
Q 026804 153 GYYRDNFIV------------------------T---------------------------------------------- 162 (233)
Q Consensus 153 ~~~~~GfIL------------------------V---------------------------------------------- 162 (233)
. .|||+ +
T Consensus 82 ~---~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~ 158 (215)
T PRK14530 82 A---DGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQ 158 (215)
T ss_pred C---CCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccC
Confidence 2 34554 0
Q ss_pred ---ecchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 163 ---NRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 163 ---D~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
|+++.+++|+..|.+++.||++||++++.++.|||++++++||+.|.+.|+.
T Consensus 159 R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 159 RDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 2467899999999999999999999988999999999999999999999875
No 19
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.91 E-value=2e-24 Score=175.13 Aligned_cols=109 Identities=32% Similarity=0.580 Sum_probs=101.0
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCeEEE-
Q 026804 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDNFIV- 161 (233)
Q Consensus 83 liGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~GfIL- 161 (233)
|+|||||||+|+|++||++||++||++++++|+++..++++|+.+++++++|+.+|++++.+++.++|.+..+..||||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998867899999
Q ss_pred -------------------------E----------------ecchHHHHHHHHHHHhccHHHHHHHhcCc
Q 026804 162 -------------------------T----------------NRGGSLKEKLEAYAELSKPLEDYYQKQKK 191 (233)
Q Consensus 162 -------------------------V----------------D~~e~i~~RL~~y~~~~~~l~~~Y~~~~~ 191 (233)
| |+++.+++|++.|++++.|+++||+++|+
T Consensus 81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~d~~~~i~~Rl~~y~~~~~~i~~~y~~~g~ 151 (151)
T PF00406_consen 81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQDNEEVIKKRLEEYRENTEPILDYYKEQGK 151 (151)
T ss_dssp SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 1 67899999999999999999999998864
No 20
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.91 E-value=1.9e-24 Score=187.90 Aligned_cols=139 Identities=29% Similarity=0.550 Sum_probs=131.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~ 156 (233)
++.+++++|+||+||+|+|.+|++.|+++||+++|++|+++.+++++|+++++++++|++|||++++.++.+++....|.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~ 93 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ 93 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999888888888788
Q ss_pred CeEEE----------------------E----------------------------------------------------
Q 026804 157 DNFIV----------------------T---------------------------------------------------- 162 (233)
Q Consensus 157 ~GfIL----------------------V---------------------------------------------------- 162 (233)
.|||| |
T Consensus 94 ~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~d 173 (235)
T KOG3078|consen 94 KGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRED 173 (235)
T ss_pred cccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCcc
Confidence 99998 0
Q ss_pred ecchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhhcc
Q 026804 163 NRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 216 (233)
Q Consensus 163 D~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~~~ 216 (233)
|++|+++.||+.|+++++||++||++++++..+++.. +++||..|...|..+.
T Consensus 174 D~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~ 226 (235)
T KOG3078|consen 174 DKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKV 226 (235)
T ss_pred ccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhh
Confidence 7789999999999999999999999999999999999 8999999999998764
No 21
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.87 E-value=1.3e-21 Score=163.16 Aligned_cols=125 Identities=30% Similarity=0.539 Sum_probs=112.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCeE
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDNF 159 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~Gf 159 (233)
+|+|+|+|||||||+|+.|+++||++||++++++++.+..++++++.++.++.+|..+|++++..++..+|.+.....||
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence 58999999999999999999999999999999999998888899999999999999999999999999999865444566
Q ss_pred EE--------------------------E-------------------------------------------ecchHHHH
Q 026804 160 IV--------------------------T-------------------------------------------NRGGSLKE 170 (233)
Q Consensus 160 IL--------------------------V-------------------------------------------D~~e~i~~ 170 (233)
|| | |+++.+++
T Consensus 81 vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~~ 160 (194)
T cd01428 81 ILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKK 160 (194)
T ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHHH
Confidence 66 0 23568999
Q ss_pred HHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHH
Q 026804 171 KLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVET 204 (233)
Q Consensus 171 RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV 204 (233)
|+..|++++.++++||.+.+.++.||+++++++|
T Consensus 161 R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 161 RLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred HHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 9999999999999999999999999999998764
No 22
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.86 E-value=1.6e-20 Score=155.64 Aligned_cols=136 Identities=19% Similarity=0.360 Sum_probs=118.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCC-C
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY-R 156 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~-~ 156 (233)
...|+|+|+|||||||+|+.|++++|++++++++++++.+..+++.++.++.++.+|..+|++.+.+.+.+++....+ .
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTS 82 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcC
Confidence 358899999999999999999999999999999999998777788899999999999999999988888888765322 3
Q ss_pred CeEEE-----------------------E------------------------ecchHHHHHHHHHHHhccHHHHHHHhc
Q 026804 157 DNFIV-----------------------T------------------------NRGGSLKEKLEAYAELSKPLEDYYQKQ 189 (233)
Q Consensus 157 ~GfIL-----------------------V------------------------D~~e~i~~RL~~y~~~~~~l~~~Y~~~ 189 (233)
.+||+ | |+++.+.+|++.|.++..++.++|++.
T Consensus 83 ~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~ 162 (188)
T TIGR01360 83 KGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETK 162 (188)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhC
Confidence 45665 0 246788999999999999999999887
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHHh
Q 026804 190 KKLLEFQVGSAPVETWQGLLTALH 213 (233)
Q Consensus 190 ~~l~~Ida~~~~~eV~~~I~~~L~ 213 (233)
+.++.||+++++++|+++|++.|+
T Consensus 163 ~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 163 GKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHh
Confidence 789999999999999999999886
No 23
>PLN02842 nucleotide kinase
Probab=99.86 E-value=6.8e-21 Score=181.73 Aligned_cols=131 Identities=15% Similarity=0.334 Sum_probs=120.9
Q ss_pred EEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCC-CCeEE
Q 026804 82 AFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY-RDNFI 160 (233)
Q Consensus 82 vliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~-~~GfI 160 (233)
+|+|+|||||||+|+.|+++||++||++++++++++..++++|+.+++++++|+.+|++++..++.+++.+..+ .+|||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999987653 57888
Q ss_pred E----------------------E------------------------------------------------ecchHHHH
Q 026804 161 V----------------------T------------------------------------------------NRGGSLKE 170 (233)
Q Consensus 161 L----------------------V------------------------------------------------D~~e~i~~ 170 (233)
| | |++|.+++
T Consensus 81 LDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ikk 160 (505)
T PLN02842 81 LDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKA 160 (505)
T ss_pred EeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHHH
Confidence 8 0 45789999
Q ss_pred HHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 171 KLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 171 RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
||+.|++++.|+.++|.. .++.||+++++++|+++|++.|+.
T Consensus 161 RL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~ 202 (505)
T PLN02842 161 RLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQ 202 (505)
T ss_pred HHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999975 589999999999999999999975
No 24
>PRK03839 putative kinase; Provisional
Probab=99.49 E-value=4.1e-13 Score=111.57 Aligned_cols=124 Identities=17% Similarity=0.255 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
|+|+|+|+|||||||+|+.|++++|++|+++++++++.- ++.... ..|+ ..++.+...+.+.....+
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~---~~~~-----~~~~~l~~~~~~~~~~~~ 67 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKD---DEME-----IDFDKLAYFIEEEFKEKN 67 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCC---hhhh-----cCHHHHHHHHHHhccCCC
Confidence 479999999999999999999999999999999987531 111000 0111 111222222221111122
Q ss_pred EEE---------------Ee-cchHHHHHHHHHH-----------Hhcc--HHHHHHHhcCcEEEEeCC-CCHHHHHHHH
Q 026804 159 FIV---------------TN-RGGSLKEKLEAYA-----------ELSK--PLEDYYQKQKKLLEFQVG-SAPVETWQGL 208 (233)
Q Consensus 159 fIL---------------VD-~~e~i~~RL~~y~-----------~~~~--~l~~~Y~~~~~l~~Ida~-~~~~eV~~~I 208 (233)
+|+ ++ +++.+.+|+.... ++.. ++.++|.+++.++.||++ +++++|+++|
T Consensus 68 vIidG~~~~l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~~~s~eev~~~I 147 (180)
T PRK03839 68 VVLDGHLSHLLPVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDTTGKTPEEVVEEI 147 (180)
T ss_pred EEEEeccccccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH
Confidence 333 23 6778888876421 0111 123556667788999996 6999999999
Q ss_pred HHHHhhc
Q 026804 209 LTALHLQ 215 (233)
Q Consensus 209 ~~~L~~~ 215 (233)
.+.|...
T Consensus 148 ~~~l~~~ 154 (180)
T PRK03839 148 LELIKSG 154 (180)
T ss_pred HHHHhcC
Confidence 9999764
No 25
>PRK13974 thymidylate kinase; Provisional
Probab=99.39 E-value=3.9e-12 Score=109.14 Aligned_cols=138 Identities=10% Similarity=0.044 Sum_probs=89.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhHhhcCCCCChHHHHHHHHHh--cCCccchHHHHHHH--HHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDLSPRSSLHKQIANAVN--RGEVVSEDIIFGLL--SKRL 150 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dllr~~i~~~s~lg~~i~~~l~--~G~~vpdei~~~li--~~rL 150 (233)
+|..|+|.|++||||||+++.|++.+....+.. .+.+......++++|+.+++++. .|...++.....++ .+|.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~ 81 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA 81 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999985321100 01111122446788888988885 34445554443333 2221
Q ss_pred H------ccCCCCe-EEE-----------------------------------------Ee-cchHHHHH----------
Q 026804 151 E------DGYYRDN-FIV-----------------------------------------TN-RGGSLKEK---------- 171 (233)
Q Consensus 151 ~------~~~~~~G-fIL-----------------------------------------VD-~~e~i~~R---------- 171 (233)
+ .+....| +|| +| +++++.+|
T Consensus 82 ~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~e 161 (212)
T PRK13974 82 QHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRIE 161 (212)
T ss_pred HHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCchh
Confidence 1 1111122 333 12 23444444
Q ss_pred --HHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 172 --LEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 172 --L~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
...|.+.+.+..++|.+++.+++||+++++++|+++|.+.|..
T Consensus 162 ~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~ 206 (212)
T PRK13974 162 AEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLN 206 (212)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 3456777888899999888999999999999999999999974
No 26
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.38 E-value=2e-12 Score=108.22 Aligned_cols=131 Identities=20% Similarity=0.217 Sum_probs=93.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHh-cCCccchHHHHHHHHHHHHccCC-
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY- 155 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~-~G~~vpdei~~~li~~rL~~~~~- 155 (233)
.+.|+|+|+|||||||+++.||+.+|++++|+|.+|.+.. |+.+.+++. .|+.-..+...+++.+-+....+
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~------g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~V 75 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT------GMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAV 75 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH------CcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeE
Confidence 3579999999999999999999999999999999998753 455666654 48877777788887776665421
Q ss_pred ---CCeEEE--------------E---ecchHHHHHHHHHHH-----hc---cHHHH-------HHHhcCcEEEEeCCCC
Q 026804 156 ---RDNFIV--------------T---NRGGSLKEKLEAYAE-----LS---KPLED-------YYQKQKKLLEFQVGSA 200 (233)
Q Consensus 156 ---~~GfIL--------------V---D~~e~i~~RL~~y~~-----~~---~~l~~-------~Y~~~~~l~~Ida~~~ 200 (233)
++|.|+ | .+.|.+.+|++.-.. .. +.+.+ .|++. ..+.++++..
T Consensus 76 iaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~-a~~~~~~~~~ 154 (172)
T COG0703 76 IATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREV-ADFIIDTDDR 154 (172)
T ss_pred EECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHh-CcEEecCCCC
Confidence 344444 1 468889999982110 11 12333 34443 3578888766
Q ss_pred HHHHHHHHHHHHhhc
Q 026804 201 PVETWQGLLTALHLQ 215 (233)
Q Consensus 201 ~~eV~~~I~~~L~~~ 215 (233)
.++|.++|.+.|...
T Consensus 155 ~~~v~~~i~~~l~~~ 169 (172)
T COG0703 155 SEEVVEEILEALEGS 169 (172)
T ss_pred cHHHHHHHHHHHHHh
Confidence 699999999988643
No 27
>PRK08233 hypothetical protein; Provisional
Probab=99.31 E-value=5.5e-11 Score=97.87 Aligned_cols=38 Identities=11% Similarity=0.014 Sum_probs=30.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR 114 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr 114 (233)
+++.|+|.|+|||||||+|+.|++.++...+...|.++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~ 39 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYD 39 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEE
Confidence 56889999999999999999999999754444444443
No 28
>PRK13949 shikimate kinase; Provisional
Probab=99.31 E-value=3.8e-11 Score=99.88 Aligned_cols=125 Identities=16% Similarity=0.204 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHH-hcCCccchHHHHHHHHHHHHccC---
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDGY--- 154 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l-~~G~~vpdei~~~li~~rL~~~~--- 154 (233)
.+|+|+|+|||||||+++.||+.++++++++++++++... ..+.+++ ..|+....++..+++.+ +....
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~------~~~~~~~~~~g~~~fr~~e~~~l~~-l~~~~~~v 74 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH------KTVGDIFAERGEAVFRELERNMLHE-VAEFEDVV 74 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC------ccHHHHHHHhCHHHHHHHHHHHHHH-HHhCCCEE
Confidence 3799999999999999999999999999999999876532 2233322 44666666666666554 43211
Q ss_pred --CCCeEEE----------------Ee-cchHHHHHHHHHH-------------------HhccHHHHHHHhcCcEEEEe
Q 026804 155 --YRDNFIV----------------TN-RGGSLKEKLEAYA-------------------ELSKPLEDYYQKQKKLLEFQ 196 (233)
Q Consensus 155 --~~~GfIL----------------VD-~~e~i~~RL~~y~-------------------~~~~~l~~~Y~~~~~l~~Id 196 (233)
+++|++. +| +++.+.+|++... +....-..+|++. . ++||
T Consensus 75 is~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~a-d-~~id 152 (169)
T PRK13949 75 ISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQA-K-IIFN 152 (169)
T ss_pred EEcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhC-C-EEEE
Confidence 1222221 23 5677788875321 0011112345543 3 6788
Q ss_pred CC-CCHHHHHHHHHHHH
Q 026804 197 VG-SAPVETWQGLLTAL 212 (233)
Q Consensus 197 a~-~~~~eV~~~I~~~L 212 (233)
++ .+++++.+.|.+.|
T Consensus 153 ~~~~~~~e~~~~I~~~~ 169 (169)
T PRK13949 153 ADKLEDESQIEQLVQRL 169 (169)
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 76 58899999988653
No 29
>PRK13973 thymidylate kinase; Provisional
Probab=99.22 E-value=2e-10 Score=98.60 Aligned_cols=139 Identities=16% Similarity=0.216 Sum_probs=82.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---CCCEEec--------chhHhhcCCCC--C---h--------------HHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISM--------SSIVRQDLSPR--S---S--------------LHKQ 126 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~---gl~~Is~--------~dllr~~i~~~--s---~--------------lg~~ 126 (233)
+|+.|+|.|++||||||+++.|++++ |++++.+ ++++|+.+..+ . + +...
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~ 81 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEV 81 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999 8888877 77777754321 1 1 1123
Q ss_pred HHHHHhcCCcc-chHHHHH-H------------HHHHHHc---cCCCCeE-EEEe-cchHHHHHHHHHH---------H-
Q 026804 127 IANAVNRGEVV-SEDIIFG-L------------LSKRLED---GYYRDNF-IVTN-RGGSLKEKLEAYA---------E- 177 (233)
Q Consensus 127 i~~~l~~G~~v-pdei~~~-l------------i~~rL~~---~~~~~Gf-ILVD-~~e~i~~RL~~y~---------~- 177 (233)
|...+.+|..| -|..+.. + +...+.. ....-.+ |++| ++++..+|+.... +
T Consensus 82 i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~~ 161 (213)
T PRK13973 82 IRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEKE 161 (213)
T ss_pred HHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhhc
Confidence 44456666543 2222210 0 0111111 0011112 2244 4556666664321 1
Q ss_pred ---hccHHHHHHHhc-----CcEEEEeCCCCHHHHHHHHHHHHhhc
Q 026804 178 ---LSKPLEDYYQKQ-----KKLLEFQVGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 178 ---~~~~l~~~Y~~~-----~~l~~Ida~~~~~eV~~~I~~~L~~~ 215 (233)
..+.+.+.|.+. +.++.||+++++++|+++|.+.+...
T Consensus 162 ~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~ 207 (213)
T PRK13973 162 DLAFHEKRREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQR 207 (213)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 112344445322 25889999999999999999999753
No 30
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.21 E-value=2.4e-10 Score=93.93 Aligned_cols=127 Identities=16% Similarity=0.131 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHH-hcCCccchHHHHHHHHHHHHccC---
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDGY--- 154 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l-~~G~~vpdei~~~li~~rL~~~~--- 154 (233)
.+|+|+|+|||||||+|+.|++++|+++++.+.++..... . .+.+++ ..|.....+...+++ +.+....
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g--~----~~~~~~~~~g~~~~~~~e~~~~-~~~~~~~~vi 75 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN--M----TVAEIVEREGWAGFRARESAAL-EAVTAPSTVI 75 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC--C----CHHHHHHHHCHHHHHHHHHHHH-HHhcCCCeEE
Confidence 3688999999999999999999999999999888765431 1 122221 122222222223333 1222211
Q ss_pred -CCCeEEE----------------Ee-cchHHHHHHHHHH--------------H----hccHHHHHHHhcCcEEEEeCC
Q 026804 155 -YRDNFIV----------------TN-RGGSLKEKLEAYA--------------E----LSKPLEDYYQKQKKLLEFQVG 198 (233)
Q Consensus 155 -~~~GfIL----------------VD-~~e~i~~RL~~y~--------------~----~~~~l~~~Y~~~~~l~~Ida~ 198 (233)
+.+|+|+ ++ +++.+.+|+.... + ..+...++|.+.. .++||++
T Consensus 76 ~~ggg~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a-~~~Id~~ 154 (171)
T PRK03731 76 ATGGGIILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVA-HHIIDAT 154 (171)
T ss_pred ECCCCccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhC-CEEEcCC
Confidence 1222222 23 4566677775321 1 1112223555432 4899999
Q ss_pred CCHHHHHHHHHHHHh
Q 026804 199 SAPVETWQGLLTALH 213 (233)
Q Consensus 199 ~~~~eV~~~I~~~L~ 213 (233)
+++++|+++|.+.|.
T Consensus 155 ~~~e~v~~~i~~~l~ 169 (171)
T PRK03731 155 QPPSQVVSEILSALA 169 (171)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998874
No 31
>PRK08356 hypothetical protein; Provisional
Probab=99.18 E-value=3.9e-10 Score=95.34 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCC----CC---hHHHHH----HHHHhcCCccch----HHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP----RS---SLHKQI----ANAVNRGEVVSE----DII 142 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~----~s---~lg~~i----~~~l~~G~~vpd----ei~ 142 (233)
.+.|+|+|||||||||+|+.|+ ++|+++|++++.++..... .. ..+... ..++..|+.+|+ +++
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~ 83 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL 83 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence 3689999999999999999996 5899999999966543222 11 223222 567777888874 666
Q ss_pred HHHHHHHHHccCCCCeEEE---------------------Ee-cchHHHHHHHHHHHhc----------cHH----HHHH
Q 026804 143 FGLLSKRLEDGYYRDNFIV---------------------TN-RGGSLKEKLEAYAELS----------KPL----EDYY 186 (233)
Q Consensus 143 ~~li~~rL~~~~~~~GfIL---------------------VD-~~e~i~~RL~~y~~~~----------~~l----~~~Y 186 (233)
.+++.+++... . .|++ |+ +++.+.+|+....... ..+ .++|
T Consensus 84 ~~~~~~~~~~~--~-~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~ 160 (195)
T PRK08356 84 IRLAVDKKRNC--K-NIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLY 160 (195)
T ss_pred HHHHHHHhccC--C-eEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhh
Confidence 66665565321 1 2332 23 3466677775432211 011 1122
Q ss_pred H-----hcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 187 Q-----KQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 187 ~-----~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
. +...++.+| +++.+++.++|.++++.
T Consensus 161 ~~~~~~~~aD~vI~N-~~~~e~~~~~i~~~~~~ 192 (195)
T PRK08356 161 HTTKLKDKADFVIVN-EGTLEELRKKVEEILRE 192 (195)
T ss_pred hhhhHHHhCcEEEEC-CCCHHHHHHHHHHHHHH
Confidence 2 222344455 68999999999998853
No 32
>PRK13948 shikimate kinase; Provisional
Probab=99.16 E-value=1.3e-09 Score=92.05 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=84.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHH-hcCCccchHHHHHHHHHHHHccC-
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDGY- 154 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l-~~G~~vpdei~~~li~~rL~~~~- 154 (233)
++..|+|+|+|||||||+++.|++++|.++|+++.++++.. |+.+.+++ ..|+....++..+++.+-+....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~------g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~ 82 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT------GKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYA 82 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH------hCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCe
Confidence 45689999999999999999999999999999998887643 33344433 34666666666665554433221
Q ss_pred ---CCCeEEE----------------E-ecchHHHHHHHHHH-----H--hccHHH-------HHHHhcCcEEEEeCC-C
Q 026804 155 ---YRDNFIV----------------T-NRGGSLKEKLEAYA-----E--LSKPLE-------DYYQKQKKLLEFQVG-S 199 (233)
Q Consensus 155 ---~~~GfIL----------------V-D~~e~i~~RL~~y~-----~--~~~~l~-------~~Y~~~~~l~~Ida~-~ 199 (233)
+++|.++ + .+++.+.+|+..-. . ....+. .+|++ . -++|+++ .
T Consensus 83 VIa~GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~-a-~~~i~t~~~ 160 (182)
T PRK13948 83 VISLGGGTFMHEENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQ-A-TIHVSTDGR 160 (182)
T ss_pred EEECCCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHh-C-CEEEECCCC
Confidence 2233332 2 45778888884210 0 001122 34543 2 3567765 7
Q ss_pred CHHHHHHHHHHHHhh
Q 026804 200 APVETWQGLLTALHL 214 (233)
Q Consensus 200 ~~~eV~~~I~~~L~~ 214 (233)
+++++.++|...|..
T Consensus 161 ~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 161 RSEEVVEEIVEKLWA 175 (182)
T ss_pred CHHHHHHHHHHHHHH
Confidence 899999999999865
No 33
>PRK13947 shikimate kinase; Provisional
Probab=99.14 E-value=2e-09 Score=88.15 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=34.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
+|+|+|+|||||||+|+.||+++|+++++.++++++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~ 39 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM 39 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh
Confidence 6999999999999999999999999999999888765
No 34
>PRK01184 hypothetical protein; Provisional
Probab=99.11 E-value=3.9e-09 Score=87.85 Aligned_cols=38 Identities=16% Similarity=0.492 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i 117 (233)
++|+|+|+|||||||+++ +++++|+++++++|++|+.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~ 39 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEV 39 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHH
Confidence 578999999999999987 78999999999999999875
No 35
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.09 E-value=2.1e-09 Score=87.66 Aligned_cols=132 Identities=13% Similarity=0.156 Sum_probs=78.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh-----cCCC----CC---h----HHHHHHHHHhcCCc--cchHHH
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ-----DLSP----RS---S----LHKQIANAVNRGEV--VSEDII 142 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~-----~i~~----~s---~----lg~~i~~~l~~G~~--vpdei~ 142 (233)
|+|+|||||||||+|+.|++.++.++++.+++... .... .. . +...+...+..|.. ++....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t~~ 80 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCSAL 80 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 57899999999999999999999999999886321 1111 00 1 11233334555542 222222
Q ss_pred HHHHHHHHHccCCCCeEEEEe-cchHHHHHHHHHHHh---ccHHHHHHHh-------cCcEEEEeCCCCHHHHHHHHHHH
Q 026804 143 FGLLSKRLEDGYYRDNFIVTN-RGGSLKEKLEAYAEL---SKPLEDYYQK-------QKKLLEFQVGSAPVETWQGLLTA 211 (233)
Q Consensus 143 ~~li~~rL~~~~~~~GfILVD-~~e~i~~RL~~y~~~---~~~l~~~Y~~-------~~~l~~Ida~~~~~eV~~~I~~~ 211 (233)
..-..+.+......--+|.++ +++.+.+|+...... ...+...|.+ ...++.||+++++++|.+++...
T Consensus 81 ~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~e~~~~~id~~~~~~~~~~~~~~~ 160 (163)
T TIGR01313 81 KRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALEEPLADETDVLRVDIDQPLEGVEEDCIAV 160 (163)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCCCceEEEECCCCHHHHHHHHHHH
Confidence 222233343222111223343 567888888765431 1233333321 12478999999999999999887
Q ss_pred H
Q 026804 212 L 212 (233)
Q Consensus 212 L 212 (233)
|
T Consensus 161 ~ 161 (163)
T TIGR01313 161 V 161 (163)
T ss_pred H
Confidence 6
No 36
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.09 E-value=1.6e-09 Score=89.97 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=36.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i 117 (233)
|+|.|.|+|||||||+|+.||++||++|||.|++||+..
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A 39 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMA 39 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHH
Confidence 589999999999999999999999999999999999753
No 37
>PRK13946 shikimate kinase; Provisional
Probab=99.09 E-value=5.3e-09 Score=87.72 Aligned_cols=134 Identities=15% Similarity=0.120 Sum_probs=77.0
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccC
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~ 154 (233)
+..+..|+|+|+|||||||+++.||+++|+++++.+.++++.. +.++...++ ..|+....+...+++.+.+....
T Consensus 7 ~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~---~~ge~~~~~~e~~~l~~l~~~~~ 81 (184)
T PRK13946 7 ALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFA---AYGEPEFRDLERRVIARLLKGGP 81 (184)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHH---HHCHHHHHHHHHHHHHHHHhcCC
Confidence 3455689999999999999999999999999999988776543 222222111 12333233333444443332211
Q ss_pred C----C---------------CeEE-EEe-cchHHHHHHHHHHH---------------hccHHHHHHHhcCcEEEEeCC
Q 026804 155 Y----R---------------DNFI-VTN-RGGSLKEKLEAYAE---------------LSKPLEDYYQKQKKLLEFQVG 198 (233)
Q Consensus 155 ~----~---------------~GfI-LVD-~~e~i~~RL~~y~~---------------~~~~l~~~Y~~~~~l~~Ida~ 198 (233)
+ . .+++ .++ +++.+.+|+..... ....-..+|.+. .+......
T Consensus 82 ~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~-dl~i~~~~ 160 (184)
T PRK13946 82 LVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEA-DLTVASRD 160 (184)
T ss_pred eEEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhC-CEEEECCC
Confidence 1 1 1211 123 45666677753211 111111345442 34433456
Q ss_pred CCHHHHHHHHHHHHhh
Q 026804 199 SAPVETWQGLLTALHL 214 (233)
Q Consensus 199 ~~~~eV~~~I~~~L~~ 214 (233)
.+++++.+.|.+.+..
T Consensus 161 ~~~~~~~~~i~~~i~~ 176 (184)
T PRK13946 161 VPKEVMADEVIEALAA 176 (184)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8999999999999865
No 38
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.08 E-value=5.3e-09 Score=85.06 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i 117 (233)
.++.|+|+|+|||||||+|+.|++++|+++++.++++++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~ 43 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA 43 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc
Confidence 45789999999999999999999999999999998887643
No 39
>PRK00625 shikimate kinase; Provisional
Probab=99.08 E-value=2e-09 Score=90.18 Aligned_cols=39 Identities=18% Similarity=0.406 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i 117 (233)
|+|+|+|+|||||||+|+.|++++|+++|++++++++..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~ 39 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY 39 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh
Confidence 479999999999999999999999999999999998643
No 40
>PLN02924 thymidylate kinase
Probab=99.06 E-value=3.3e-09 Score=92.11 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=82.7
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHH-HHHHHHHH
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF-GLLSKRLE 151 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~-~li~~rL~ 151 (233)
..+.+++.|+|.|++||||||+++.|+++++...+.+ .+++. ...++..|+.+++++..+..+.+.... -...+|.+
T Consensus 11 ~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~ 88 (220)
T PLN02924 11 SVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWE 88 (220)
T ss_pred CcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999996544432 22222 223566777777777655433222111 01111111
Q ss_pred cc------CCCCeEEE-------------------------------------Ee-cchHHHHHHHH----H--HHhccH
Q 026804 152 DG------YYRDNFIV-------------------------------------TN-RGGSLKEKLEA----Y--AELSKP 181 (233)
Q Consensus 152 ~~------~~~~GfIL-------------------------------------VD-~~e~i~~RL~~----y--~~~~~~ 181 (233)
.. -..+..|| +| ++++..+|... | .+..+.
T Consensus 89 ~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~~E~~~~~~r 168 (220)
T PLN02924 89 KRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKK 168 (220)
T ss_pred HHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccccHHHHHH
Confidence 10 00111222 14 45666667531 1 112234
Q ss_pred HHHHHHhc--CcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 182 LEDYYQKQ--KKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 182 l~~~Y~~~--~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
+.+.|.+- ..++.||+++++++|.++|.+.+..
T Consensus 169 v~~~Y~~la~~~~~vIDa~~sieeV~~~I~~~I~~ 203 (220)
T PLN02924 169 VAKRFQTLRDSSWKIIDASQSIEEVEKKIREVVLD 203 (220)
T ss_pred HHHHHHHHhhcCEEEECCCCCHHHHHHHHHHHHHH
Confidence 55556421 3578899999999999999999865
No 41
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.06 E-value=2.1e-09 Score=104.46 Aligned_cols=134 Identities=13% Similarity=0.153 Sum_probs=86.8
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHH-hcCCccchHHHHHHHHHHHHcc
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDG 153 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l-~~G~~vpdei~~~li~~rL~~~ 153 (233)
|-|..+|+|+|+|||||||+++.||+++|+++|++++.+.+.. |+.+.+++ ..|+.-+.++..+++.+-+...
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~ 76 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLEDF 76 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4577799999999999999999999999999999999988753 34455543 4566666666665555433221
Q ss_pred C----CCC-------------------eEEE-E-ecchHHHHHHHHHH------H-hccHHHHH-------HHhcCcEEE
Q 026804 154 Y----YRD-------------------NFIV-T-NRGGSLKEKLEAYA------E-LSKPLEDY-------YQKQKKLLE 194 (233)
Q Consensus 154 ~----~~~-------------------GfIL-V-D~~e~i~~RL~~y~------~-~~~~l~~~-------Y~~~~~l~~ 194 (233)
. +++ |+|+ + .+++.+.+|+..-. . ..+.+.+. |++-.. +.
T Consensus 77 ~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~~Ad-~~ 155 (542)
T PRK14021 77 DGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFRQVAN-VH 155 (542)
T ss_pred CeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhhCC-EE
Confidence 1 122 2222 3 35778888875210 0 01123333 433222 56
Q ss_pred EeCC-CCHHHHHHHHHHHHhhc
Q 026804 195 FQVG-SAPVETWQGLLTALHLQ 215 (233)
Q Consensus 195 Ida~-~~~~eV~~~I~~~L~~~ 215 (233)
||++ .+++++.++|.+.+...
T Consensus 156 i~~~~~~~~~~~~~i~~~~~~~ 177 (542)
T PRK14021 156 VHTRGLTPQAAAKKLIDMVAER 177 (542)
T ss_pred EECCCCCHHHHHHHHHHHHHhc
Confidence 7764 79999999999988654
No 42
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.06 E-value=1.1e-09 Score=97.75 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-CCCEEecchhHhhcCCCCCh-----------------HHHHHHHHHhcCCcc-ch
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSS-----------------LHKQIANAVNRGEVV-SE 139 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~-gl~~Is~~dllr~~i~~~s~-----------------lg~~i~~~l~~G~~v-pd 139 (233)
..|+|.|+|||||||+|+.|++++ +..+|+.+++ +..+....+ ....++..+.+|..+ -|
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid 81 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIIS 81 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 578889999999999999999999 9999998665 433321110 011223445555532 11
Q ss_pred HH-----HHHHHHHHHHccCCCCeEEEE------------------ecchHHH---HHHHHHHHhccHHHHHHHhcCcEE
Q 026804 140 DI-----IFGLLSKRLEDGYYRDNFIVT------------------NRGGSLK---EKLEAYAELSKPLEDYYQKQKKLL 193 (233)
Q Consensus 140 ei-----~~~li~~rL~~~~~~~GfILV------------------D~~e~i~---~RL~~y~~~~~~l~~~Y~~~~~l~ 193 (233)
.. ..+.+.+........-.+|.+ ..++.++ +|++.|.+.+.|++..|..+.+++
T Consensus 82 ~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (300)
T PHA02530 82 DTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAV 161 (300)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEE
Confidence 11 111222222221111111221 2355666 777888888889987777666678
Q ss_pred EEeCCCCHHH
Q 026804 194 EFQVGSAPVE 203 (233)
Q Consensus 194 ~Ida~~~~~e 203 (233)
.+|.++++.+
T Consensus 162 ~~D~dgtl~~ 171 (300)
T PHA02530 162 IFDIDGTLAK 171 (300)
T ss_pred EEECCCcCcC
Confidence 8887766543
No 43
>PRK06217 hypothetical protein; Validated
Probab=99.05 E-value=5.9e-09 Score=87.16 Aligned_cols=38 Identities=11% Similarity=0.247 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
++|+|+|+|||||||+|+.|++++|++++++++++++.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~ 39 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP 39 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc
Confidence 68999999999999999999999999999999988753
No 44
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.04 E-value=2.5e-09 Score=89.54 Aligned_cols=127 Identities=16% Similarity=0.245 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCC--CCC-----------hHHHHHHHHHhcCCccchHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS--PRS-----------SLHKQIANAVNRGEVVSEDIIFGL 145 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~--~~s-----------~lg~~i~~~l~~G~~vpdei~~~l 145 (233)
|+|+|.|.||+||||+|++|+ ++|+.++++.+++++.-- ... .+-+.+...+.++..|-+..+..+
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H~~hl 79 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGIVDSHLSHL 79 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeEeechhhhc
Confidence 589999999999999999999 999999999999876421 000 011111122222333322222222
Q ss_pred HHHHHHccCCCCeEEEE--ecchHHHHHHHHH-------HHhcc-HHH-----HHHHhcCcEEEEeCC-CCHHHHHHHHH
Q 026804 146 LSKRLEDGYYRDNFIVT--NRGGSLKEKLEAY-------AELSK-PLE-----DYYQKQKKLLEFQVG-SAPVETWQGLL 209 (233)
Q Consensus 146 i~~rL~~~~~~~GfILV--D~~e~i~~RL~~y-------~~~~~-~l~-----~~Y~~~~~l~~Ida~-~~~~eV~~~I~ 209 (233)
+. .+ ..|+| .+|+.+.+||+.. .+|.. .+. +........+.||++ .+++++.+.|.
T Consensus 80 ~~------~~--dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~v~evdtt~~s~ee~~~~i~ 151 (180)
T COG1936 80 LP------DC--DLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERFEAVIEVDTTNRSPEEVAEEII 151 (180)
T ss_pred CC------CC--CEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHH
Confidence 21 11 22333 7899999999863 12211 111 112222468999974 99999999999
Q ss_pred HHHhh
Q 026804 210 TALHL 214 (233)
Q Consensus 210 ~~L~~ 214 (233)
.++..
T Consensus 152 ~ii~~ 156 (180)
T COG1936 152 DIIGG 156 (180)
T ss_pred HHHcc
Confidence 99984
No 45
>PRK06762 hypothetical protein; Provisional
Probab=99.03 E-value=7.4e-09 Score=84.65 Aligned_cols=135 Identities=14% Similarity=0.115 Sum_probs=78.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh--CCCEEecchhHhhcCCC-----CCh----HHHHHHHHHhcCCcc-chHHH---
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSP-----RSS----LHKQIANAVNRGEVV-SEDII--- 142 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~--gl~~Is~~dllr~~i~~-----~s~----lg~~i~~~l~~G~~v-pdei~--- 142 (233)
++.|+|.|+|||||||+|+.|++++ ++.+++. |.++..+.. +.. +...++..+..|..+ -+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~-D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~vild~~~~~~ 80 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ-DVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGHCEFVILEGILNSD 80 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH-HHHHHHhccccCCCCCcCHHHHHHHHHHHHhCCCEEEEchhhccH
Confidence 4688999999999999999999999 5566775 445543321 111 122333446677644 22221
Q ss_pred --HHHHHHHHHcc-CCCCeEEEEec-chHHHHHHHHHHH----hccHHHHHHHhcC-----cEEEEeCCCCHHHHHHHHH
Q 026804 143 --FGLLSKRLEDG-YYRDNFIVTNR-GGSLKEKLEAYAE----LSKPLEDYYQKQK-----KLLEFQVGSAPVETWQGLL 209 (233)
Q Consensus 143 --~~li~~rL~~~-~~~~GfILVD~-~e~i~~RL~~y~~----~~~~l~~~Y~~~~-----~l~~Ida~~~~~eV~~~I~ 209 (233)
...+. .+.+. .....+|++|. .++..+|...... ..+.+.+.|...+ -.+.++.+.++++|.++|.
T Consensus 81 ~~~~~~~-~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 159 (166)
T PRK06762 81 RYGPMLK-ELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDTLGVIGETIFTDNLSLKDIFDAIL 159 (166)
T ss_pred hHHHHHH-HHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCCcCCCCeEEecCCCCHHHHHHHHH
Confidence 12222 22222 11222344554 4777777765422 1344556664332 2344555689999999999
Q ss_pred HHHhh
Q 026804 210 TALHL 214 (233)
Q Consensus 210 ~~L~~ 214 (233)
+.+..
T Consensus 160 ~~~~~ 164 (166)
T PRK06762 160 TDIGL 164 (166)
T ss_pred HHhcc
Confidence 98864
No 46
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.01 E-value=6.5e-09 Score=88.10 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=45.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l 131 (233)
++|.|+|++||||||+++.|++ +|+++|+.|++.++.+.++++..+.+.+.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~f 54 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAF 54 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHh
Confidence 5799999999999999999999 999999999999998887777776666554
No 47
>PLN02199 shikimate kinase
Probab=98.99 E-value=1.1e-08 Score=92.65 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=86.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHH-hcCCccchHHHHHHHHHHHHccC-
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDGY- 154 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l-~~G~~vpdei~~~li~~rL~~~~- 154 (233)
++..|+|+|+|||||||+++.||+.+|+++|+++.++++... |..+.+++ ..|+....+...+++.+-.....
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~ 175 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKLSSRYQV 175 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCE
Confidence 456899999999999999999999999999999999987532 22344443 45777777777776665433221
Q ss_pred ---CCCeEEE---------------E-ecchHHHHHHHH-HHH-------h--------ccHHH-------HHHHhcCcE
Q 026804 155 ---YRDNFIV---------------T-NRGGSLKEKLEA-YAE-------L--------SKPLE-------DYYQKQKKL 192 (233)
Q Consensus 155 ---~~~GfIL---------------V-D~~e~i~~RL~~-y~~-------~--------~~~l~-------~~Y~~~~~l 192 (233)
+++|.|+ + .++|.+.+|+.. +.+ . ...+. .+|++.+
T Consensus 176 VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY~~Ad-- 253 (303)
T PLN02199 176 VVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNAN-- 253 (303)
T ss_pred EEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHHHhCC--
Confidence 2334333 1 357888888874 210 0 01222 3465533
Q ss_pred EEEe------------C-CCCHHHHHHHHHHHHhh
Q 026804 193 LEFQ------------V-GSAPVETWQGLLTALHL 214 (233)
Q Consensus 193 ~~Id------------a-~~~~~eV~~~I~~~L~~ 214 (233)
+.|+ + +.+++++..+|+..+..
T Consensus 254 ~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~ 288 (303)
T PLN02199 254 ARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLS 288 (303)
T ss_pred EEEecccccccccccccCCCCHHHHHHHHHHHHHH
Confidence 3555 3 58899988888888764
No 48
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.99 E-value=1.2e-08 Score=86.73 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l 131 (233)
++|.|+|+|||||||+|+.|++.+|+++|+.+++.++....+++.++.+.+.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~f 54 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRY 54 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHh
Confidence 47999999999999999999999999999999999998888888887777665
No 49
>PRK08118 topology modulation protein; Reviewed
Probab=98.98 E-value=8e-10 Score=91.76 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC---CCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL---SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i---~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~ 155 (233)
++|+|+|+|||||||+|+.|++++|++++++++++...- .........+++++.+...|-|......+..++..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~wVidG~~~~~~~~~l~~--- 78 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKEDEWIIDGNYGGTMDIRLNA--- 78 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcCCCEEEeCCcchHHHHHHHh---
Confidence 589999999999999999999999999999999885321 11112333445556555566555444444444543
Q ss_pred CCeEEEEecc
Q 026804 156 RDNFIVTNRG 165 (233)
Q Consensus 156 ~~GfILVD~~ 165 (233)
....|.+|.+
T Consensus 79 ~d~vi~Ld~p 88 (167)
T PRK08118 79 ADTIIFLDIP 88 (167)
T ss_pred CCEEEEEeCC
Confidence 2234445544
No 50
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.97 E-value=8.2e-09 Score=86.58 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+++.|+|.|++||||||+++.|++.+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999987
No 51
>PRK04182 cytidylate kinase; Provisional
Probab=98.96 E-value=7.5e-09 Score=84.83 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
|+|+|.|+|||||||+|+.|++++|++++++++++++.
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~ 38 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFREL 38 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHH
Confidence 57999999999999999999999999999998888764
No 52
>PRK13975 thymidylate kinase; Provisional
Probab=98.95 E-value=3.4e-08 Score=82.63 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
++.|+|.|++||||||+++.|+++++..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3689999999999999999999999853
No 53
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.94 E-value=3.7e-08 Score=81.50 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCEEec
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISM 109 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~---gl~~Is~ 109 (233)
+.|+|.|++||||||+++.|++.+ |..++.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 478999999999999999999998 6655544
No 54
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.93 E-value=1.4e-08 Score=92.10 Aligned_cols=135 Identities=15% Similarity=0.176 Sum_probs=80.8
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHh-cCCccchHHHHHHHHHHH
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRL 150 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~-~G~~vpdei~~~li~~rL 150 (233)
+.-+.++..|+|+|+|||||||+++.|++++|+++|+++..+.+.. |..+.++.. .|+....++..+.+.+.+
T Consensus 127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~------G~~i~ei~~~~G~~~fr~~e~~~l~~ll 200 (309)
T PRK08154 127 GRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA------GLSVSEIFALYGQEGYRRLERRALERLI 200 (309)
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh------CCCHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 3446678899999999999999999999999999999987776542 111222221 344444444444444443
Q ss_pred HccC-----CCCe---------------EEE-E-ecchHHHHHHHHHH----------------HhccHHHHHHHhcCcE
Q 026804 151 EDGY-----YRDN---------------FIV-T-NRGGSLKEKLEAYA----------------ELSKPLEDYYQKQKKL 192 (233)
Q Consensus 151 ~~~~-----~~~G---------------fIL-V-D~~e~i~~RL~~y~----------------~~~~~l~~~Y~~~~~l 192 (233)
.... +..| +++ + .+++...+|+.... +....-..+|+.. .
T Consensus 201 ~~~~~~VI~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~a-d- 278 (309)
T PRK08154 201 AEHEEMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARA-D- 278 (309)
T ss_pred hhCCCEEEECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC-C-
Confidence 3211 1111 111 2 34566667774311 1111122345432 2
Q ss_pred EEEeCC-CCHHHHHHHHHHHHhh
Q 026804 193 LEFQVG-SAPVETWQGLLTALHL 214 (233)
Q Consensus 193 ~~Ida~-~~~~eV~~~I~~~L~~ 214 (233)
++||++ .+++++.++|...+..
T Consensus 279 ~~I~t~~~s~ee~~~~I~~~l~~ 301 (309)
T PRK08154 279 AVVDTSGLTVAQSLARLRELVRP 301 (309)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
Confidence 467776 5999999999998854
No 55
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.92 E-value=7.3e-09 Score=88.58 Aligned_cols=144 Identities=10% Similarity=0.039 Sum_probs=80.5
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHh-CC--C-------------------EEecchhHhhcCCC----------CC
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-EV--P-------------------RISMSSIVRQDLSP----------RS 121 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~-gl--~-------------------~Is~~dllr~~i~~----------~s 121 (233)
.|.++..|+|+||+||||||+++.|.+.. .+ + +++..+ +.+.+.. +.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~-f~~~~~~~~~le~~~~~g~ 87 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEE-FREMISQNELLEWAEVYGN 87 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHH-HHHHHHcCCcEEEEEEcCc
Confidence 46688899999999999999999998652 22 1 111111 1111110 11
Q ss_pred hHH---HHHHHHHhcCCccchHHHHHHHHHHHHccCCCCeEEEE--ecchHHHHHHHHHHHhc-----cHHHHHHHh---
Q 026804 122 SLH---KQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDNFIVT--NRGGSLKEKLEAYAELS-----KPLEDYYQK--- 188 (233)
Q Consensus 122 ~lg---~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~GfILV--D~~e~i~~RL~~y~~~~-----~~l~~~Y~~--- 188 (233)
.+| ..++..+++|..+--++..+-+ ..+.+....--||++ .+.+++.+|+....... +-+..+|.+
T Consensus 88 ~YGt~~~~i~~~~~~g~~vi~~~~~~g~-~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~ 166 (206)
T PRK14738 88 YYGVPKAPVRQALASGRDVIVKVDVQGA-ASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQ 166 (206)
T ss_pred eecCCHHHHHHHHHcCCcEEEEcCHHHH-HHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 122 4577777778643222222221 123332222234443 24556778876542211 223334421
Q ss_pred --cCcEEEEeCCCCHHHHHHHHHHHHhhccccC
Q 026804 189 --QKKLLEFQVGSAPVETWQGLLTALHLQHINA 219 (233)
Q Consensus 189 --~~~l~~Ida~~~~~eV~~~I~~~L~~~~~~~ 219 (233)
...++.||+++++++++++|.+.|....++.
T Consensus 167 ~~~~~~~iId~~~~~e~v~~~i~~~l~~~~~~~ 199 (206)
T PRK14738 167 LPEFDYVVVNPEDRLDEAVAQIMAIISAEKSRV 199 (206)
T ss_pred ccCCCEEEECCCCCHHHHHHHHHHHHHHHhccc
Confidence 1247889999999999999999998765543
No 56
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.92 E-value=7.7e-09 Score=85.01 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
...++|+|.|-||+||||+|++||+.+|+++|.++|++++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn 45 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKEN 45 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhh
Confidence 34578999999999999999999999999999999999863
No 57
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.88 E-value=1.7e-09 Score=83.57 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=32.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dll 113 (233)
+|+|.|+|||||||+|+.|++++|+++|++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 5899999999999999999999999999999954
No 58
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.87 E-value=5.4e-08 Score=81.02 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
..+|+|+|++||||||+++.|++.+|+++++.+..+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~ 42 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR 42 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHH
Confidence 457999999999999999999999999999998876654
No 59
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.84 E-value=1.2e-07 Score=79.22 Aligned_cols=27 Identities=37% Similarity=0.471 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
+++.|+|.|+|||||||+++.|++.++
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999984
No 60
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.84 E-value=1.6e-08 Score=97.25 Aligned_cols=125 Identities=13% Similarity=0.147 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHH-hcCCccchHHHHHHHHHHHHccC---
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDGY--- 154 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l-~~G~~vpdei~~~li~~rL~~~~--- 154 (233)
|+|+|+|+|||||||+++.|++++|++++++++++++.. |..+.+++ ..|+....+...+++++-+....
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~------g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vi 74 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE------GRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVV 74 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc------CCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEE
Confidence 579999999999999999999999999999999887642 22222222 23444444444444443322211
Q ss_pred -CCCeEEE---------------E-ecchHHHHHHHHHH-----HhccHHHHHHHhc----CcEEEEeCC-CCHHHHHHH
Q 026804 155 -YRDNFIV---------------T-NRGGSLKEKLEAYA-----ELSKPLEDYYQKQ----KKLLEFQVG-SAPVETWQG 207 (233)
Q Consensus 155 -~~~GfIL---------------V-D~~e~i~~RL~~y~-----~~~~~l~~~Y~~~----~~l~~Ida~-~~~~eV~~~ 207 (233)
+.+|+|+ + -+++.+.+|+..-. +....+.+.|.++ ..+..||++ .+++++.++
T Consensus 75 s~Gggvv~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~~RPLl~~~~e~l~~L~~~R~~lY~~~~~IDt~~~s~~e~~~~ 154 (488)
T PRK13951 75 ATGGGVVIDPENRELLKKEKTLFLYAPPEVLMERVTTENRPLLREGKERIREIWERRKQFYTEFRGIDTSKLNEWETTAL 154 (488)
T ss_pred ECCCccccChHHHHHHhcCeEEEEECCHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHhcccEEECCCCCHHHHHHH
Confidence 2233333 2 34677778875310 0011233333322 124578876 667666655
Q ss_pred HH
Q 026804 208 LL 209 (233)
Q Consensus 208 I~ 209 (233)
|.
T Consensus 155 iv 156 (488)
T PRK13951 155 VV 156 (488)
T ss_pred HH
Confidence 53
No 61
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.83 E-value=1.5e-09 Score=92.82 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=39.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP 119 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~ 119 (233)
+++.|+|.|+|||||||+|+.|++++|+.++..+|++|+.+..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~ 44 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRP 44 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHH
Confidence 5678999999999999999999999999999999999987653
No 62
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.83 E-value=4.5e-08 Score=80.26 Aligned_cols=130 Identities=16% Similarity=0.163 Sum_probs=83.6
Q ss_pred EcCCCCCHHHHHHHHHHHhCCCEEecchhHhh-c---CCCCCh------------HHHHHHHHHhcCC--ccchHHHHHH
Q 026804 84 IGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ-D---LSPRSS------------LHKQIANAVNRGE--VVSEDIIFGL 145 (233)
Q Consensus 84 iGpPGSGKsTlA~~La~~~gl~~Is~~dllr~-~---i~~~s~------------lg~~i~~~l~~G~--~vpdei~~~l 145 (233)
||..||||||+++.||+++|+++|+-+|+=-. + +..+.+ ++..+....+.|+ .|....+.+-
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALKr~ 80 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALKRS 80 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHHHH
Confidence 69999999999999999999999996664211 1 122221 2223333333444 3344445555
Q ss_pred HHHHHHccCCCCeEEEE-ecchHHHHHHHHHHHhccH----------HHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 146 LSKRLEDGYYRDNFIVT-NRGGSLKEKLEAYAELSKP----------LEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 146 i~~rL~~~~~~~GfILV-D~~e~i~~RL~~y~~~~~~----------l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
..++|......-.||.+ -+.+.+.+|++..+....| |+.--.+. .++.||.++++++|.+++.+.|+.
T Consensus 81 YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~P~~de-~vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 81 YRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFATLEEPGADE-DVLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred HHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCCCCCC-CEEEeeCCCCHHHHHHHHHHHHhc
Confidence 56666654334445555 4788999999886543322 22111122 489999999999999999998865
No 63
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.82 E-value=1.4e-07 Score=80.50 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=45.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l 131 (233)
+.|.|+|++||||||+++.|++ +|+++|+.+++.++.+.++++..+.+.+.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~f 53 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAF 53 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHh
Confidence 4789999999999999999997 899999999999988887777666666655
No 64
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.82 E-value=1e-07 Score=77.60 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
|.|+|.|+|||||||+|+.|++++|+++++.+++++..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~ 38 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFREL 38 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHH
Confidence 57899999999999999999999999999998888754
No 65
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.82 E-value=6.9e-08 Score=80.06 Aligned_cols=135 Identities=15% Similarity=0.099 Sum_probs=76.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCE--EecchhHhhcCC-----------CC------Ch--------HHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSIVRQDLS-----------PR------SS--------LHKQIANA 130 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~--Is~~dllr~~i~-----------~~------s~--------lg~~i~~~ 130 (233)
+..|+|.|+|||||||+|+.|++.++.++ ++.++++..... ++ .+ +...++.+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 81 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAM 81 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999987654 466555432110 00 00 11245567
Q ss_pred HhcCCccchHHH---HHHHHHHHHccC-CCCeEEEE-ecchHHHHHHHHHHHhccHHHHH-HH----hcCcEEEEeCC-C
Q 026804 131 VNRGEVVSEDII---FGLLSKRLEDGY-YRDNFIVT-NRGGSLKEKLEAYAELSKPLEDY-YQ----KQKKLLEFQVG-S 199 (233)
Q Consensus 131 l~~G~~vpdei~---~~li~~rL~~~~-~~~GfILV-D~~e~i~~RL~~y~~~~~~l~~~-Y~----~~~~l~~Ida~-~ 199 (233)
++.|..+--+.. ..-+.+.+.... ..--+|.+ .+.+++.+|+.........+... ++ .....+.||++ .
T Consensus 82 l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~dl~iDts~~ 161 (175)
T cd00227 82 ARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVPGQARKQARVVHAGVEYDLEVDTTHK 161 (175)
T ss_pred HhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCccchHHHHHHHHhcCCCcceEEEECCCC
Confidence 788875532211 112222222211 11123333 35678888887644333323221 11 12236799987 6
Q ss_pred CHHHHHHHHHHHH
Q 026804 200 APVETWQGLLTAL 212 (233)
Q Consensus 200 ~~~eV~~~I~~~L 212 (233)
+++++.++|++.|
T Consensus 162 s~~e~a~~i~~~l 174 (175)
T cd00227 162 TPIECARAIAARV 174 (175)
T ss_pred CHHHHHHHHHHhc
Confidence 7999999998876
No 66
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.80 E-value=2.5e-07 Score=79.86 Aligned_cols=134 Identities=14% Similarity=0.197 Sum_probs=82.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh---CCCEEecchhHhhcCCCCChHHHHHHHHHhcC-CccchHHHH-HHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-EVVSEDIIF-GLLSKRL 150 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~---gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G-~~vpdei~~-~li~~rL 150 (233)
++++.|+|.|.-||||||+++.|.+++ |+..+-+ | ...++++|+.+++++.++ ..+.+.... -...+|.
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t----r--EP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~ 74 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT----R--EPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRA 74 (208)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE----e--CCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 368999999999999999999999998 4433322 2 255688999999988876 333222211 1112222
Q ss_pred Hc------cCCCCe-EEE-----------------------------------------Ee-cchHHHHHHHHH------
Q 026804 151 ED------GYYRDN-FIV-----------------------------------------TN-RGGSLKEKLEAY------ 175 (233)
Q Consensus 151 ~~------~~~~~G-fIL-----------------------------------------VD-~~e~i~~RL~~y------ 175 (233)
+. +....| +|| +| .++...+|+...
T Consensus 75 ~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r 154 (208)
T COG0125 75 QHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDR 154 (208)
T ss_pred HHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccch
Confidence 11 112233 333 03 356666666533
Q ss_pred -HHh----ccHHHHHHH---hc--CcEEEEeCCCCHHHHHHHHHHHHhhc
Q 026804 176 -AEL----SKPLEDYYQ---KQ--KKLLEFQVGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 176 -~~~----~~~l~~~Y~---~~--~~l~~Ida~~~~~eV~~~I~~~L~~~ 215 (233)
++. -+.+.+.|. +. ..+++||+++++++|.++|.+.|...
T Consensus 155 ~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~ 204 (208)
T COG0125 155 FEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKER 204 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHh
Confidence 111 223444442 12 24899999999999999999998753
No 67
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.80 E-value=3.6e-08 Score=80.73 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHh-cCCccchHHHHHHHHHHHHccC----CCCe---
Q 026804 87 PRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGY----YRDN--- 158 (233)
Q Consensus 87 PGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~-~G~~vpdei~~~li~~rL~~~~----~~~G--- 158 (233)
|||||||+++.||+++|++++++++++.+.. |+.+.+++. .|+.-..+...+++.+-+.... |++|
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~------g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~ 74 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT------GMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVL 74 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH------TSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGG
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh------CCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcC
Confidence 7999999999999999999999999887643 334444432 3444444555555544443321 1111
Q ss_pred -------------EEEE-ecchHHHHHHHHHHH------hcc---------HHHHHHHhcCcEEEEeCCCCH-HHHHHHH
Q 026804 159 -------------FIVT-NRGGSLKEKLEAYAE------LSK---------PLEDYYQKQKKLLEFQVGSAP-VETWQGL 208 (233)
Q Consensus 159 -------------fILV-D~~e~i~~RL~~y~~------~~~---------~l~~~Y~~~~~l~~Ida~~~~-~eV~~~I 208 (233)
+|++ .+++.+.+|+..... ... .-...|.+.. .+.|+.+..+ +++.++|
T Consensus 75 ~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a-~~~v~~~~~~~~~i~~~i 153 (158)
T PF01202_consen 75 KEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQAA-DIVVDTDGSPPEEIAEEI 153 (158)
T ss_dssp SHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHHHS-SEEEETSSCHHHHHHHHH
T ss_pred cHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcC-eEEEeCCCCCHHHHHHHH
Confidence 1112 467888888875432 000 1113455543 3678887666 9999999
Q ss_pred HHHHh
Q 026804 209 LTALH 213 (233)
Q Consensus 209 ~~~L~ 213 (233)
++.|.
T Consensus 154 ~~~l~ 158 (158)
T PF01202_consen 154 LEFLK 158 (158)
T ss_dssp HHHH-
T ss_pred HHHhC
Confidence 98873
No 68
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.78 E-value=2.1e-07 Score=80.95 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=36.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~ 115 (233)
+.+.|.|.|+|||||||+|+.|++++|+++++.++++|.
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 357899999999999999999999999999999998775
No 69
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.76 E-value=2.8e-07 Score=79.80 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=35.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~ 115 (233)
.+.|.|-||.||||||+|+.||++||++|+++|-+.|.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa 41 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRA 41 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHH
Confidence 38999999999999999999999999999999998875
No 70
>PRK07261 topology modulation protein; Provisional
Probab=98.74 E-value=2e-08 Score=83.50 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCC---CChHHHHHHHHHhcCCccchHHHHHHH-HHHHHc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP---RSSLHKQIANAVNRGEVVSEDIIFGLL-SKRLED 152 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~---~s~lg~~i~~~l~~G~~vpdei~~~li-~~rL~~ 152 (233)
++|+|+|+|||||||+|+.|++.+|+++++.+++....-.. ..++-..+.+++.++..|-|....... ..++..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~wIidg~~~~~~~~~~l~~ 78 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHDWIIDGNYSWCLYEERMQE 78 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCCEEEcCcchhhhHHHHHHH
Confidence 57999999999999999999999999999998765432111 123445566677777777776666533 445553
No 71
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.74 E-value=1.8e-07 Score=78.35 Aligned_cols=134 Identities=15% Similarity=0.098 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCC-----ChHHH--------------------------HH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPR-----SSLHK--------------------------QI 127 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~-----s~lg~--------------------------~i 127 (233)
..++|+||+||||||+++.|+..++..++..+..+....... .-.++ .+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~ 82 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI 82 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence 478999999999999999999998766555443332211100 00111 12
Q ss_pred HHHHhcCCccchHHHHHHHHHHHHccCCCCeEEE-E-ecchHHHHHHHHHHHhc-cHHHH------HHHhcCcEEEEeCC
Q 026804 128 ANAVNRGEVVSEDIIFGLLSKRLEDGYYRDNFIV-T-NRGGSLKEKLEAYAELS-KPLED------YYQKQKKLLEFQVG 198 (233)
Q Consensus 128 ~~~l~~G~~vpdei~~~li~~rL~~~~~~~GfIL-V-D~~e~i~~RL~~y~~~~-~~l~~------~Y~~~~~l~~Ida~ 198 (233)
++.+..|..|--.-. ..+...+.+.....++|+ + .+.+.+.+|+....... ..+.. +|. ....++||.+
T Consensus 83 ~~~l~~g~~VI~~G~-~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~~~~~-~ad~~vi~~~ 160 (186)
T PRK10078 83 DLWLHAGFDVLVNGS-RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLARAARYQ-PQDCHTLNND 160 (186)
T ss_pred HHHHhCCCEEEEeCh-HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc-cCCEEEEeCC
Confidence 333344433211111 111122322222334333 4 35677888886432111 11211 232 2346788878
Q ss_pred CCHHHHHHHHHHHHhh
Q 026804 199 SAPVETWQGLLTALHL 214 (233)
Q Consensus 199 ~~~~eV~~~I~~~L~~ 214 (233)
++++++.++|.+.|..
T Consensus 161 ~s~ee~~~~i~~~l~~ 176 (186)
T PRK10078 161 GSLRQSVDTLLTLLHL 176 (186)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 8999999999999864
No 72
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.73 E-value=1.1e-07 Score=79.61 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=43.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIAN 129 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~ 129 (233)
+|.|+|.+||||||+++.|++..|+++|+.+++.++.+..+++....+.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~ 50 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVD 50 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHH
Confidence 47899999999999999999998899999999999988777765555543
No 73
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.73 E-value=1.4e-07 Score=92.32 Aligned_cols=137 Identities=18% Similarity=0.161 Sum_probs=84.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCC------CEEecchhHhhcCCCCC---h---------HHHHHHHHHhcCCcc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV------PRISMSSIVRQDLSPRS---S---------LHKQIANAVNRGEVV 137 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl------~~Is~~dllr~~i~~~s---~---------lg~~i~~~l~~G~~v 137 (233)
+++..|+|+|+|||||||+|+.|+++++. .+++. |.+|+.+..+. . ++..++..+..|..+
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~-D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~v 468 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDG-DVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIA 468 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCC-cHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 46789999999999999999999999986 67765 56676554321 1 233344566777665
Q ss_pred chH------HHHHHHHHHHHccCCCCeEEEE--e-cchHHHHHHHH--HHH----hccHH----HHHHHhcCcEEEEeCC
Q 026804 138 SED------IIFGLLSKRLEDGYYRDNFIVT--N-RGGSLKEKLEA--YAE----LSKPL----EDYYQKQKKLLEFQVG 198 (233)
Q Consensus 138 pde------i~~~li~~rL~~~~~~~GfILV--D-~~e~i~~RL~~--y~~----~~~~l----~~~Y~~~~~l~~Ida~ 198 (233)
..+ -..+...+.+.+ .++|++| + +.+.+.+|... |.+ ..+.+ ..||.....-++||++
T Consensus 469 I~~~~~p~~~~R~~nr~llk~---~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~p~~Adl~IDt~ 545 (568)
T PRK05537 469 ICAPIAPYRATRREVREMIEA---YGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEPPANPELVIDTT 545 (568)
T ss_pred EEEeCCchHHHHHHHHHHHhh---cCCEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccCCCCCcEEEECC
Confidence 322 122233333432 1346443 3 56777788642 221 11111 2355422223688876
Q ss_pred -CCHHHHHHHHHHHHhhcc
Q 026804 199 -SAPVETWQGLLTALHLQH 216 (233)
Q Consensus 199 -~~~~eV~~~I~~~L~~~~ 216 (233)
.+++++.++|...|..++
T Consensus 546 ~~s~~eiv~~Il~~L~~~g 564 (568)
T PRK05537 546 NVTPDECAHKILLYLEEKG 564 (568)
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 689999999999997654
No 74
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.72 E-value=2e-07 Score=79.89 Aligned_cols=46 Identities=7% Similarity=0.069 Sum_probs=38.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSL 123 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~l 123 (233)
.++.|.|.|++||||||+++.|++ +|++.++.+.+.++....+...
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~ 49 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEV 49 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHH
Confidence 347899999999999999999997 8999999998888766555443
No 75
>PRK04040 adenylate kinase; Provisional
Probab=98.72 E-value=2.5e-07 Score=78.34 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh--CCCEEecchhHhhc
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQD 116 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~--gl~~Is~~dllr~~ 116 (233)
+++|+|.|+|||||||+++.|++++ ++.+++.++++++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~ 42 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEV 42 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHH
Confidence 4689999999999999999999999 89999999987654
No 76
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.70 E-value=2.9e-07 Score=77.58 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
++..|+|+||+||||||+++.|++.++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 567899999999999999999999875
No 77
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=2.2e-07 Score=77.02 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh----cCCCCCh--------HHHH----HHHHHhcCCcc--chH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ----DLSPRSS--------LHKQ----IANAVNRGEVV--SED 140 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~----~i~~~s~--------lg~~----i~~~l~~G~~v--pde 140 (233)
-.|+|+|+.||||||+++.|++++++++|+-+|+=-. -+..+.+ +-+. ++..+..|+.+ -..
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~vVlACS 92 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGVVLACS 92 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeEEEEhH
Confidence 4788999999999999999999999999998775311 1222222 1122 22333445433 222
Q ss_pred H----HHHHHHHHHHccC---CC---CeEEEE-ecchHHHHHHHHHHHhccHH--H-HHHH-------hcCcEEEEeCC-
Q 026804 141 I----IFGLLSKRLEDGY---YR---DNFIVT-NRGGSLKEKLEAYAELSKPL--E-DYYQ-------KQKKLLEFQVG- 198 (233)
Q Consensus 141 i----~~~li~~rL~~~~---~~---~GfILV-D~~e~i~~RL~~y~~~~~~l--~-~~Y~-------~~~~l~~Ida~- 198 (233)
. +.+++...+..+. |. --||+. .+.|++.+|+...+....|. . .-|+ +...++.|++.
T Consensus 93 aLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lleSQf~~LE~p~~~e~div~isv~~ 172 (191)
T KOG3354|consen 93 ALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLLESQFATLEAPDADEEDIVTISVKT 172 (191)
T ss_pred HHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHHHHHHHhccCCCCCccceEEEeecc
Confidence 2 2234433333221 11 125554 68899999998866543322 1 1111 12247899987
Q ss_pred CCHHHHHHHHHHHHhh
Q 026804 199 SAPVETWQGLLTALHL 214 (233)
Q Consensus 199 ~~~~eV~~~I~~~L~~ 214 (233)
.+++++...|.+-+..
T Consensus 173 ~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 173 YSVEEIVDTIVKMVAL 188 (191)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998887653
No 78
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.66 E-value=4.4e-07 Score=87.78 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~ 115 (233)
++++|.|.||+||||||+|+.|++++|+.+++.|++.|.
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~ 321 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRA 321 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehH
Confidence 778999999999999999999999999999999999886
No 79
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.65 E-value=1.8e-07 Score=78.39 Aligned_cols=25 Identities=12% Similarity=0.031 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+..|+|+||+||||+|+++.|.+.+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3578999999999999999999985
No 80
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.64 E-value=6.2e-07 Score=74.13 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
..++|+|||||||||+++.|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998754
No 81
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.61 E-value=6.8e-08 Score=80.61 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=44.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l 131 (233)
.|.|+|+|||||||+++.|++ +|+++|+++++.++....+.+.+..+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~f 51 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAF 51 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHc
Confidence 378999999999999999999 999999999999998887777777776654
No 82
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.59 E-value=5.9e-07 Score=76.21 Aligned_cols=130 Identities=14% Similarity=0.153 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCC---------------------C--------------CC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS---------------------P--------------RS 121 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~---------------------~--------------~s 121 (233)
+|+.++|.||+|+||||+.+.|-++.++ .+|++-.-|..-. . ++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l-~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKL-RFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCe-EEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence 6889999999999999999999988854 3343322232110 0 11
Q ss_pred hHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCeEEEE-----------------ecchHHHHHHHHHHHhccHHHH
Q 026804 122 SLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDNFIVT-----------------NRGGSLKEKLEAYAELSKPLED 184 (233)
Q Consensus 122 ~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~GfILV-----------------D~~e~i~~RL~~y~~~~~~l~~ 184 (233)
+ -..+.+.+.+|+.+--++..+-.. .+.+..+..-+|++ |++++|++||....++.....+
T Consensus 82 ~-~~~ve~~~~~G~~vildId~qGa~-qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~~ 159 (191)
T COG0194 82 S-REPVEQALAEGKDVILDIDVQGAL-QVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHADE 159 (191)
T ss_pred c-HHHHHHHHhcCCeEEEEEehHHHH-HHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1 134555666666655444443322 23322222223332 7788899999887766544433
Q ss_pred HHHhcCcEEEEeCCCCHHHHHHHHHHHHhhcc
Q 026804 185 YYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 216 (233)
Q Consensus 185 ~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~~~ 216 (233)
|+ .+.| +.+.+..+++|.+++..++
T Consensus 160 -fd----yviv--Ndd~e~a~~~l~~ii~aer 184 (191)
T COG0194 160 -FD----YVIV--NDDLEKALEELKSIILAER 184 (191)
T ss_pred -CC----EEEE--CccHHHHHHHHHHHHHHHH
Confidence 33 3555 6778888888888887654
No 83
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.58 E-value=1.4e-06 Score=75.49 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
+.|.|.||+||||||+++.|++++++++++.|+++|..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 68999999999999999999999999999999887653
No 84
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.56 E-value=8.5e-07 Score=74.25 Aligned_cols=126 Identities=11% Similarity=0.131 Sum_probs=72.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccc-------hHHHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS-------EDIIFGLLSKRL 150 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vp-------dei~~~li~~rL 150 (233)
+-.++|+|++||||||+++.|+..++..+|+-+++.... .++. +..|.... ...+...+...+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDK-MSQGIPLTDEDRLPWLERLNDASYSLY 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHH-HhcCCCCCcccchHHHHHHHHHHHHHH
Confidence 457899999999999999999999999888765542110 0000 01111111 111111111111
Q ss_pred HccCCCCeEEE-----------------------Ee-cchHHHHHHHHHHHhcc--HHHHH----H----HhcCcEEEEe
Q 026804 151 EDGYYRDNFIV-----------------------TN-RGGSLKEKLEAYAELSK--PLEDY----Y----QKQKKLLEFQ 196 (233)
Q Consensus 151 ~~~~~~~GfIL-----------------------VD-~~e~i~~RL~~y~~~~~--~l~~~----Y----~~~~~l~~Id 196 (233)
.. ...|+|+ ++ +++.+.+|+........ .+.+. + .....++.||
T Consensus 73 ~~--~~~g~iv~s~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e~~~~~e~~~~~~d 150 (176)
T PRK09825 73 KK--NETGFIVCSSLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALERPCADEHDIARID 150 (176)
T ss_pred hc--CCCEEEEEEecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcCCCCCCcCCeEEEE
Confidence 11 1234433 23 67888999976643221 12211 1 1112489999
Q ss_pred CCCCHHHHHHHHHHHHhhc
Q 026804 197 VGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 197 a~~~~~eV~~~I~~~L~~~ 215 (233)
++++++++.+++...+..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~ 169 (176)
T PRK09825 151 VNHDIENVTEQCRQAVQAF 169 (176)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998765
No 85
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.55 E-value=1.6e-06 Score=76.55 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=44.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIAN 129 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~ 129 (233)
+.|.|.|..||||||+++.|.+++|++.|+.|.+.++...++++....+.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~ 52 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAA 52 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHH
Confidence 578999999999999999999999999999999999988777765555544
No 86
>PLN02422 dephospho-CoA kinase
Probab=98.55 E-value=1.8e-06 Score=75.77 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=42.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANA 130 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~ 130 (233)
.|.|+|++||||||+++.|+ ++|+++|+.|++.++.+.++++....+.+.
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~ 52 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAA 52 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHH
Confidence 68999999999999999999 689999999999999887776555555443
No 87
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.55 E-value=1.4e-07 Score=74.55 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=32.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
.|+|+|+|||||||+|+.|++.++..+|+.+++.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~ 37 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRL 37 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHH
Confidence 4789999999999999999999999999987765543
No 88
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.51 E-value=4.2e-06 Score=72.04 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=38.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP 119 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~ 119 (233)
.++.|.|.|++||||||+++.|++++|+++++.+.+.++....
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~ 47 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK 47 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc
Confidence 4578999999999999999999999999999999988887654
No 89
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.51 E-value=6.2e-07 Score=74.03 Aligned_cols=129 Identities=9% Similarity=0.062 Sum_probs=70.7
Q ss_pred EcCCCCCHHHHHHHHHHHhCCCEEecchh-----HhhcCCC----CC---hHHHH----HHHHHhc-CCc-cchHHHHHH
Q 026804 84 IGSPRAKKHVYAEMLSKLLEVPRISMSSI-----VRQDLSP----RS---SLHKQ----IANAVNR-GEV-VSEDIIFGL 145 (233)
Q Consensus 84 iGpPGSGKsTlA~~La~~~gl~~Is~~dl-----lr~~i~~----~s---~lg~~----i~~~l~~-G~~-vpdei~~~l 145 (233)
+|+|||||||+++.|++++|.++++.+.+ ++..... .. +.... ....... |.. |.-....+-
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s~~~~~ 80 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKH 80 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEEEecchHH
Confidence 69999999999999999999999987543 2221100 00 01111 1111112 221 111111222
Q ss_pred HHHHHHccCCCCeEEEE---ecchHHHHHHHHHHHhcc--HHH----HHHH----hcCcEEEEeCCCCHHHHHHHHHHHH
Q 026804 146 LSKRLEDGYYRDNFIVT---NRGGSLKEKLEAYAELSK--PLE----DYYQ----KQKKLLEFQVGSAPVETWQGLLTAL 212 (233)
Q Consensus 146 i~~rL~~~~~~~GfILV---D~~e~i~~RL~~y~~~~~--~l~----~~Y~----~~~~l~~Ida~~~~~eV~~~I~~~L 212 (233)
..+.+.+. ...|.+| .+++++++|+........ .+. +.++ ....++.||++.+++++..++...|
T Consensus 81 ~r~~~~~~--~~~~~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id~~~~~~~~~~~~~~~~ 158 (163)
T PRK11545 81 YRDLLREG--NPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVI 158 (163)
T ss_pred HHHHHHcc--CCCEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcCCCCCCCCCEEEEeCCCCHHHHHHHHHHHH
Confidence 23333332 2224333 467889999987653211 111 1121 1124789999999999999999988
Q ss_pred hh
Q 026804 213 HL 214 (233)
Q Consensus 213 ~~ 214 (233)
..
T Consensus 159 ~~ 160 (163)
T PRK11545 159 KK 160 (163)
T ss_pred HH
Confidence 43
No 90
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.51 E-value=8.5e-07 Score=75.08 Aligned_cols=142 Identities=16% Similarity=0.161 Sum_probs=76.2
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHh---C--CCEEecchhHhhcCCC------CC------hHHHHHHHHHhcCCc
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSP------RS------SLHKQIANAVNRGEV 136 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~---g--l~~Is~~dllr~~i~~------~s------~lg~~i~~~l~~G~~ 136 (233)
.+.++..|+|+|++||||||+++.|++.+ | ..+++. |-++..+.. .. .++..++..+..|..
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~-d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~~ 98 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG-DNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGLV 98 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC-EeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCCE
Confidence 34577899999999999999999999987 3 345543 334332111 11 122234445667765
Q ss_pred cchHHHH--HHHHHHHHccCCCCeEEE--Ee-cchHHHHHHH--HHH----HhccH---HHHHHHh-cCcEEEEeC-CCC
Q 026804 137 VSEDIIF--GLLSKRLEDGYYRDNFIV--TN-RGGSLKEKLE--AYA----ELSKP---LEDYYQK-QKKLLEFQV-GSA 200 (233)
Q Consensus 137 vpdei~~--~li~~rL~~~~~~~GfIL--VD-~~e~i~~RL~--~y~----~~~~~---l~~~Y~~-~~~l~~Ida-~~~ 200 (233)
|-..... +-..+++.+.-...++++ ++ +.+.+.+|-. .+. +.... ....|+. +..-+.||+ +.+
T Consensus 99 VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~Y~~p~~ad~~Idt~~~~ 178 (198)
T PRK03846 99 VLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSVYEAPESPEIHLDTGEQL 178 (198)
T ss_pred EEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCcccccccCCCCCCCCEEEECCCCC
Confidence 5332211 111222222222336643 33 4566667610 011 11111 2223551 212357885 589
Q ss_pred HHHHHHHHHHHHhhcc
Q 026804 201 PVETWQGLLTALHLQH 216 (233)
Q Consensus 201 ~~eV~~~I~~~L~~~~ 216 (233)
++++.++|+..|..+.
T Consensus 179 ~~~vv~~Il~~l~~~~ 194 (198)
T PRK03846 179 VTNLVEQLLDYLRQRD 194 (198)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999997654
No 91
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.50 E-value=1.5e-06 Score=76.02 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=70.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CC--CEEecchhHhhcCCC----CCh-----HHHHHHHHHhcCCccc-hHH-HH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVRQDLSP----RSS-----LHKQIANAVNRGEVVS-EDI-IF 143 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~---gl--~~Is~~dllr~~i~~----~s~-----lg~~i~~~l~~G~~vp-dei-~~ 143 (233)
.|+|+|+|||||||+|+.|++.+ |+ .+++. |.+++.+.. ... ....++..+.+|..|- |.. ..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~~~ 79 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYY 79 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccchH
Confidence 37899999999999999999987 34 34443 555554311 000 1123455666765442 221 11
Q ss_pred HHHHHHHH----ccCCCCeEEEEe-cchHHHHHHHHHHHh-----ccHHHHHHHh-------cCcEEEEeCCC--CHHHH
Q 026804 144 GLLSKRLE----DGYYRDNFIVTN-RGGSLKEKLEAYAEL-----SKPLEDYYQK-------QKKLLEFQVGS--APVET 204 (233)
Q Consensus 144 ~li~~rL~----~~~~~~GfILVD-~~e~i~~RL~~y~~~-----~~~l~~~Y~~-------~~~l~~Ida~~--~~~eV 204 (233)
.-....+. ........|.++ ..+.+.+|....... ...+.+.|.+ ....++||++. +++++
T Consensus 80 ~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~~~~~~ei 159 (249)
T TIGR03574 80 NSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTKKIDYNEI 159 (249)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEecCCCCCCHHHH
Confidence 11111121 111111223344 345666665432211 1122222221 12578999875 67899
Q ss_pred HHHHHHHHhh
Q 026804 205 WQGLLTALHL 214 (233)
Q Consensus 205 ~~~I~~~L~~ 214 (233)
++.|...+..
T Consensus 160 ~~~i~~~~~~ 169 (249)
T TIGR03574 160 LEEILEISEN 169 (249)
T ss_pred HHHHHHHhhc
Confidence 9999988754
No 92
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.50 E-value=1.3e-06 Score=72.09 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
+..|+|+||+||||||+++.|++.+.-.++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~ 31 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFS 31 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcccccc
Confidence 3579999999999999999999987544443
No 93
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.50 E-value=1.9e-06 Score=85.69 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
+.++|.|.||+||||||+|+.|++++|++|+++++++|..
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 4568999999999999999999999999999999988864
No 94
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.49 E-value=2.2e-06 Score=73.07 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=40.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHH
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIAN 129 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~ 129 (233)
|.|.|++||||||+++.|++ +|.+.|+.+++.++....+.+....+.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~ 49 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVS 49 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHH
Confidence 67999999999999999965 6999999999999877766665555544
No 95
>PRK06547 hypothetical protein; Provisional
Probab=98.46 E-value=4e-07 Score=76.17 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=36.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~ 115 (233)
.+++.|+|.|++||||||+|+.|++.++++.++++++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~ 52 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPG 52 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecc
Confidence 4677899999999999999999999999999999987753
No 96
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.46 E-value=2.1e-07 Score=74.49 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=34.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i 117 (233)
.|+|+|+|||||||+|+.|++.+|+++++.+++++...
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~ 38 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRA 38 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHc
Confidence 37899999999999999999999999999998887654
No 97
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.45 E-value=6.9e-07 Score=74.43 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=73.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh---C--CCEEecchhHhhcCCCCC------------hHHHHHHHHHhcCCccc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPRS------------SLHKQIANAVNRGEVVS 138 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~---g--l~~Is~~dllr~~i~~~s------------~lg~~i~~~l~~G~~vp 138 (233)
.++..|+|.|+|||||||+++.|+..+ | ..+++ +|-+++.+..+. .++..++.++.+|..|-
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~-~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~VI 94 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLD-GDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIVI 94 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC-ChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 467899999999999999999999987 3 34555 345554332211 12233444567776553
Q ss_pred hHHHH--HHHHHHHHccCCCCeEEE--Ee-cchHHHHHHH--HHHHh----cc---HHH-HHHHhcCcEEEEeCC-CCHH
Q 026804 139 EDIIF--GLLSKRLEDGYYRDNFIV--TN-RGGSLKEKLE--AYAEL----SK---PLE-DYYQKQKKLLEFQVG-SAPV 202 (233)
Q Consensus 139 dei~~--~li~~rL~~~~~~~GfIL--VD-~~e~i~~RL~--~y~~~----~~---~l~-~~Y~~~~~l~~Ida~-~~~~ 202 (233)
.+... +-..+.+........|++ ++ +.+.+.+|-. -|.+. .. .+. .||..+..-++||++ .+++
T Consensus 95 ~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~y~~p~~adl~Idt~~~~~~ 174 (184)
T TIGR00455 95 TSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEVVLDTDQNDRE 174 (184)
T ss_pred EecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCCCCCCCCCcEEEECCCCCHH
Confidence 22221 112222322211224544 33 3456666621 12211 11 122 233323345788865 6899
Q ss_pred HHHHHHHHHH
Q 026804 203 ETWQGLLTAL 212 (233)
Q Consensus 203 eV~~~I~~~L 212 (233)
++.++|...|
T Consensus 175 ~~~~~i~~~l 184 (184)
T TIGR00455 175 ECVGQIIEKL 184 (184)
T ss_pred HHHHHHHHhC
Confidence 9999887653
No 98
>PRK12338 hypothetical protein; Provisional
Probab=98.44 E-value=2.7e-06 Score=77.86 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=37.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLS 118 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~ 118 (233)
++..|+|.|+|||||||+|+.||+++|+.++..+|.+|+.+.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~ 44 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVR 44 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHc
Confidence 567899999999999999999999999999977898887644
No 99
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.42 E-value=2.2e-06 Score=70.77 Aligned_cols=139 Identities=16% Similarity=0.125 Sum_probs=72.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecchhHhhcCCCC--ChHHH--------HHHH-HHhcCCccch
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPR--SSLHK--------QIAN-AVNRGEVVSE 139 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~dllr~~i~~~--s~lg~--------~i~~-~l~~G~~vpd 139 (233)
.+|..|+|.|+|||||||+|+.|+++++ ..+++ +|-+++.+... ..... .+.+ ...+|..|--
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~-~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~ 83 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD-GDELREILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIV 83 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe-cHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3678999999999999999999999985 45565 45566543321 11110 1112 2345643321
Q ss_pred HHHH--HHHHHHHHccCCCCe-EEEEe-cchHHHHHHHH--HHHh----ccHH----HHHHHhcCcEEEEeCC--CCHHH
Q 026804 140 DIIF--GLLSKRLEDGYYRDN-FIVTN-RGGSLKEKLEA--YAEL----SKPL----EDYYQKQKKLLEFQVG--SAPVE 203 (233)
Q Consensus 140 ei~~--~li~~rL~~~~~~~G-fILVD-~~e~i~~RL~~--y~~~----~~~l----~~~Y~~~~~l~~Ida~--~~~~e 203 (233)
+-.. +-+.+..... .... .|+++ +++++.+|+.. +... ...+ ..+|.+.. =++||.+ .++++
T Consensus 84 ~~~~~~~~~~~~~~~~-~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~A-d~vI~~~~~~~~~~ 161 (176)
T PRK05541 84 TTISMFDEIYAYNRKH-LPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPKA-DLVIDNSCRTSLDE 161 (176)
T ss_pred EeCCcHHHHHHHHHhh-cCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCCC-CEEEeCCCCCCHHH
Confidence 1111 1111111111 1111 22244 57788888752 2211 1111 12343322 2455554 58999
Q ss_pred HHHHHHHHHhhccc
Q 026804 204 TWQGLLTALHLQHI 217 (233)
Q Consensus 204 V~~~I~~~L~~~~~ 217 (233)
+.++|.+.+..+.+
T Consensus 162 ~v~~i~~~l~~~~~ 175 (176)
T PRK05541 162 KVDLILNKLKLRLI 175 (176)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999988876543
No 100
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.41 E-value=1.1e-06 Score=73.18 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=31.7
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHh
Q 026804 83 FIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN 132 (233)
Q Consensus 83 liGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~ 132 (233)
|.|..||||||+++.|++++.-..+. .+...-..+++.|+.+++++.
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~---~~~~~~~~~~~~g~~ir~~l~ 47 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK---VIITFPPGSTPIGELIRELLR 47 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE---EEEEESSTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc---ccccCCCCCChHHHHHHHHHh
Confidence 57999999999999999998433322 011112345667777777766
No 101
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.40 E-value=4.7e-07 Score=77.80 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=42.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIA 128 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~ 128 (233)
++.|-|.|.|||||||+|+.+++ +|++.|++|+++|+...++++....+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~ 51 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIA 51 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHH
Confidence 46889999999999999999999 999999999999987776655444443
No 102
>PRK07933 thymidylate kinase; Validated
Probab=98.40 E-value=5.1e-06 Score=71.61 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
|.|+|.|+.||||||+++.|++.+
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L 24 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAAL 24 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999998
No 103
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.39 E-value=5.7e-06 Score=77.72 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=41.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIA 128 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~ 128 (233)
++|.|+|++||||||+++.|++ +|+++|+.+++.++.+..++.....+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~ 50 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALV 50 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHH
Confidence 4799999999999999999987 899999999999987776654433343
No 104
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.38 E-value=1.9e-06 Score=71.12 Aligned_cols=138 Identities=19% Similarity=0.124 Sum_probs=71.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecchhHhhcCCCC-----Ch-------HHHHHHHHHhcCCccch
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPR-----SS-------LHKQIANAVNRGEVVSE 139 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~dllr~~i~~~-----s~-------lg~~i~~~l~~G~~vpd 139 (233)
++..|+|+|+|||||||+|+.|++.+. +.+++.+. +++.+..+ .. ++...+.....|..+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~-~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~ 81 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA-VRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV 81 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc-HHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 566899999999999999999999882 56677644 44433211 00 11112223344554321
Q ss_pred HHH--HHHHHHHHHccCCCCeEEEEe-cchHHHHHHH--HHHH----hccH----HHHHHHhcCcEEEEeC-CCCHHHHH
Q 026804 140 DII--FGLLSKRLEDGYYRDNFIVTN-RGGSLKEKLE--AYAE----LSKP----LEDYYQKQKKLLEFQV-GSAPVETW 205 (233)
Q Consensus 140 ei~--~~li~~rL~~~~~~~GfILVD-~~e~i~~RL~--~y~~----~~~~----l~~~Y~~~~~l~~Ida-~~~~~eV~ 205 (233)
+.. ..-+.+++......--+|.+| ..+.+.+|.. -|.. .... -..+|.....-+.|+. +.+++++.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~~~~~~~~~~~ 161 (175)
T PRK00889 82 SAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECRTDLESLEESV 161 (175)
T ss_pred ecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEECCCCCHHHHH
Confidence 111 112223333322111233344 3566666642 1211 1111 1233432211134444 57899999
Q ss_pred HHHHHHHhhc
Q 026804 206 QGLLTALHLQ 215 (233)
Q Consensus 206 ~~I~~~L~~~ 215 (233)
++|...|..+
T Consensus 162 ~~i~~~l~~~ 171 (175)
T PRK00889 162 DKVLQKLEEL 171 (175)
T ss_pred HHHHHHHHHc
Confidence 9999999754
No 105
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.37 E-value=8.2e-06 Score=68.98 Aligned_cols=27 Identities=7% Similarity=-0.059 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+++.|+|+||+||||+|+++.|.+++
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 367889999999999999999998886
No 106
>PRK13976 thymidylate kinase; Provisional
Probab=98.36 E-value=1.4e-05 Score=68.86 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
+.|+|.|..||||||+++.|++.+.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~ 25 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLS 25 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999874
No 107
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.35 E-value=4.2e-07 Score=71.89 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dl 112 (233)
.|+|.|+|||||||+|+.|++++|+++++.+.+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i 33 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGI 33 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccC
Confidence 478999999999999999999999999999744
No 108
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.31 E-value=5.8e-07 Score=75.07 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC--CEEecchhHhh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEV--PRISMSSIVRQ 115 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl--~~Is~~dllr~ 115 (233)
++++|+|+|||||||+|..|+++++. .+|.++.....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~ 40 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD 40 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH
Confidence 57999999999999999999999874 46666554433
No 109
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.30 E-value=5.3e-07 Score=72.33 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=31.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR 114 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr 114 (233)
.|+|.|+|||||||+|+.|++.++.++++.+++..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~ 35 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHP 35 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCccccc
Confidence 37899999999999999999999999999877654
No 110
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.28 E-value=1.6e-05 Score=72.34 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=34.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
.+|+.|+|.|++||||||+|..|++++|++.+.-.|.+|+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~ 130 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREV 130 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 46789999999999999999999999999865446777743
No 111
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.27 E-value=1.2e-05 Score=67.95 Aligned_cols=139 Identities=16% Similarity=0.170 Sum_probs=87.7
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh---CCC-EEecchhHhhcCCCCCh------------HHHHHHHHHhcCCcc-
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP-RISMSSIVRQDLSPRSS------------LHKQIANAVNRGEVV- 137 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~---gl~-~Is~~dllr~~i~~~s~------------lg~~i~~~l~~G~~v- 137 (233)
..++..|+|.|.+||||||+|..|.+++ |.. ++==||-+|.-++.+-. .+..++-+.+.|-.+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~ivi 99 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVI 99 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEE
Confidence 4578899999999999999999999997 443 33337888887764311 233344455666543
Q ss_pred -----chHHHHHHHHHHHHccCCCCeEEE--Eecc-hHHHHHHH--HHHHhccH-------HHHHHH-hcCcEEEEeCC-
Q 026804 138 -----SEDIIFGLLSKRLEDGYYRDNFIV--TNRG-GSLKEKLE--AYAELSKP-------LEDYYQ-KQKKLLEFQVG- 198 (233)
Q Consensus 138 -----pdei~~~li~~rL~~~~~~~GfIL--VD~~-e~i~~RL~--~y~~~~~~-------l~~~Y~-~~~~l~~Ida~- 198 (233)
|-.-..+++.+.+.. +.||= ||.| ++..+|=. -|++.... +-.-|+ ....-+.+|++
T Consensus 100 va~ISP~r~~R~~aR~~~~~----~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pYE~P~~Pel~l~t~~ 175 (197)
T COG0529 100 VAFISPYREDRQMARELLGE----GEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYEAPENPELHLDTDR 175 (197)
T ss_pred EEeeCccHHHHHHHHHHhCc----CceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCCCCCCCCeeEecccc
Confidence 333344555555543 24544 5654 44555532 26543222 223453 33456889975
Q ss_pred CCHHHHHHHHHHHHhhccc
Q 026804 199 SAPVETWQGLLTALHLQHI 217 (233)
Q Consensus 199 ~~~~eV~~~I~~~L~~~~~ 217 (233)
.++++..++|...|..+.+
T Consensus 176 ~~vee~v~~i~~~l~~~~~ 194 (197)
T COG0529 176 NSVEECVEQILDLLKERKI 194 (197)
T ss_pred CCHHHHHHHHHHHHHhccc
Confidence 8999999999999977653
No 112
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.22 E-value=4.5e-06 Score=82.64 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=77.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecchhHhhcCCCCCh------------HHHHHHHHHhcCCccc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQDLSPRSS------------LHKQIANAVNRGEVVS 138 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~dllr~~i~~~s~------------lg~~i~~~l~~G~~vp 138 (233)
.++..|++.|.|||||||+|+.|+++++ +.+|+- |.+|..+..+.. +...++....+|..+-
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~-D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~~Vi 536 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG-DNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIVL 536 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC-hhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 3678999999999999999999999972 355654 667765543221 1123344456775542
Q ss_pred hHHHH--HHHHHHHHccCCCCeEEEE--e-cchHHHHHHH--HHHH----hcc---HHH-HHHHhcCcEEEEeC-CCCHH
Q 026804 139 EDIIF--GLLSKRLEDGYYRDNFIVT--N-RGGSLKEKLE--AYAE----LSK---PLE-DYYQKQKKLLEFQV-GSAPV 202 (233)
Q Consensus 139 dei~~--~li~~rL~~~~~~~GfILV--D-~~e~i~~RL~--~y~~----~~~---~l~-~~Y~~~~~l~~Ida-~~~~~ 202 (233)
.+... +-..+.+.+.....+|++| + +.+.+.+|.. .|.+ ... .+. .|+..+..-+.||. +.+++
T Consensus 537 vda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~y~~P~~a~~~Id~~~~s~~ 616 (632)
T PRK05506 537 VSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAPENPELRLDTTGRSPE 616 (632)
T ss_pred EECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccccccccCCCCCCCCeEEEeCCCCCHH
Confidence 22211 1112223222112244443 3 4667777631 1211 111 111 23321223468887 57999
Q ss_pred HHHHHHHHHHhhc
Q 026804 203 ETWQGLLTALHLQ 215 (233)
Q Consensus 203 eV~~~I~~~L~~~ 215 (233)
++.++|.+.|..+
T Consensus 617 e~v~~Ii~~l~~~ 629 (632)
T PRK05506 617 ELAEQVLELLRRR 629 (632)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998653
No 113
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.19 E-value=2.1e-05 Score=65.05 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=32.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---CCC--EEecchhHhhcCCC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVRQDLSP 119 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~---gl~--~Is~~dllr~~i~~ 119 (233)
||..|+|.|.|||||||+|+.|.+++ |.+ +++ +|.+|+.+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD-gD~lR~~l~~ 47 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD-GDNLRHGLNA 47 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE-HHHHCTTTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec-CcchhhccCC
Confidence 57899999999999999999999998 444 444 4777776654
No 114
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.18 E-value=3.7e-06 Score=70.98 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=44.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANA 130 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~ 130 (233)
|.|.|+|..||||||+++.|++ +|++.|+.+++.++.+..+++....+.+.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~ 51 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKER 51 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHH
Confidence 5789999999999999999999 99999999999999988887776666554
No 115
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.15 E-value=2.2e-05 Score=75.15 Aligned_cols=41 Identities=29% Similarity=0.299 Sum_probs=35.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
.++..|+|.|+||+||||+|..||+++|+.+|...|.+|+.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~ 293 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREV 293 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHH
Confidence 46889999999999999999999999999866555666663
No 116
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.13 E-value=2.8e-06 Score=86.75 Aligned_cols=44 Identities=18% Similarity=0.108 Sum_probs=40.7
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
|.|++++.|.|.|||||||||+|+.||+++|+.+|++|.++|..
T Consensus 29 ~~~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 29 CRPMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred ecccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 66778889999999999999999999999999999999998863
No 117
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.09 E-value=3.2e-06 Score=65.26 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=25.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
|+|.||||+|||++++.+++.++.+++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 68999999999999999999999876544
No 118
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.07 E-value=1.1e-05 Score=69.89 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+.|++.|+|||||||+|+.|++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 578999999999999999999987
No 119
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.07 E-value=3.4e-06 Score=84.57 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~ 115 (233)
++|.|.|||||||||+|+.||+++|+.++++|.+.|.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~ 38 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRA 38 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHH
Confidence 4799999999999999999999999999999999876
No 120
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.07 E-value=3.8e-05 Score=64.15 Aligned_cols=138 Identities=12% Similarity=0.153 Sum_probs=72.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCC-hHHHHHH---------------HHHhcCCc-cch
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRS-SLHKQIA---------------NAVNRGEV-VSE 139 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s-~lg~~i~---------------~~l~~G~~-vpd 139 (233)
-.|+|+|.|+||+||||++++|++.+.-.-+.++-++-.++..+. -.|-.|- ....-|+. |.-
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence 358999999999999999999999985443444445544444321 1111110 00111222 222
Q ss_pred HHHHHHHHHHHHccCCCCeEEEEecchHHHHHHHHHH-------------------HhccHHHHHHHhcCcEEE-EeCCC
Q 026804 140 DIIFGLLSKRLEDGYYRDNFIVTNRGGSLKEKLEAYA-------------------ELSKPLEDYYQKQKKLLE-FQVGS 199 (233)
Q Consensus 140 ei~~~li~~rL~~~~~~~GfILVD~~e~i~~RL~~y~-------------------~~~~~l~~~Y~~~~~l~~-Ida~~ 199 (233)
+...++....|+........|+||--.-+.-.-+.|. ....|+.+-+++.+.++. ++ ..
T Consensus 84 ~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt-~~ 162 (179)
T COG1618 84 EGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLT-PE 162 (179)
T ss_pred HHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEc-cc
Confidence 3333344344443222234566543211111111111 123567777877776666 54 34
Q ss_pred CHHHHHHHHHHHHhhc
Q 026804 200 APVETWQGLLTALHLQ 215 (233)
Q Consensus 200 ~~~eV~~~I~~~L~~~ 215 (233)
+-+.+..+|+..|...
T Consensus 163 NR~~i~~~Il~~L~~~ 178 (179)
T COG1618 163 NRNRILNEILSVLKGE 178 (179)
T ss_pred hhhHHHHHHHHHhccC
Confidence 4468999999888653
No 121
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.05 E-value=8.7e-05 Score=63.91 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEE
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~I 107 (233)
.|+|.|.-||||||+++.|+++++...+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 4889999999999999999999986444
No 122
>PRK06696 uridine kinase; Validated
Probab=98.04 E-value=5.2e-06 Score=71.57 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=33.1
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh---CCCE--EecchhHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPR--ISMSSIVR 114 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~---gl~~--Is~~dllr 114 (233)
+.+++.|.|.|+|||||||+|+.|++.+ |.++ ++++|...
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 3578899999999999999999999999 5554 45777664
No 123
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.03 E-value=8.9e-05 Score=63.13 Aligned_cols=135 Identities=16% Similarity=0.223 Sum_probs=87.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHH-----------H
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF-----------G 144 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~-----------~ 144 (233)
.|+.+|++-|--+|||+|++..|.+.+. +......++ ..-...+++|+.|..++.+-..+|+.++- .
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~~~l~-~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDPAELL-RFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHH-hccChHHhh-hcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 4788999999999999999999999883 322222332 23345678999999999988888877653 4
Q ss_pred HHHHHHHccCCCCeEEE---------------------------------E---e-cchHHHHHH----HHHHH--hccH
Q 026804 145 LLSKRLEDGYYRDNFIV---------------------------------T---N-RGGSLKEKL----EAYAE--LSKP 181 (233)
Q Consensus 145 li~~rL~~~~~~~GfIL---------------------------------V---D-~~e~i~~RL----~~y~~--~~~~ 181 (233)
+|++.+.++. ..|+ | | +++.+.+|= +.|++ ..+.
T Consensus 81 ~i~e~l~kg~---~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~Erye~v~fqek 157 (208)
T KOG3327|consen 81 LIKEKLAKGT---TLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEERYETVAFQEK 157 (208)
T ss_pred HHHHHHhcCC---eEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchhHHHHHHHHHH
Confidence 5555555431 1111 1 2 344443331 12221 2233
Q ss_pred HHHHHH----hc-CcEEEEeCCCCHHHHHHHHHHHHhhc
Q 026804 182 LEDYYQ----KQ-KKLLEFQVGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 182 l~~~Y~----~~-~~l~~Ida~~~~~eV~~~I~~~L~~~ 215 (233)
+..+|. +. -.++.|||+.+.++|.++|..+++.-
T Consensus 158 v~~~~q~l~r~e~~~~~~vDAs~sve~V~~~V~~i~e~~ 196 (208)
T KOG3327|consen 158 VLVFFQKLLRKEDLNWHVVDASKSVEKVHQQVRSLVENV 196 (208)
T ss_pred HHHHHHHHHhccCCCeEEEecCccHHHHHHHHHHHHHHh
Confidence 444553 22 24899999999999999998887753
No 124
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.00 E-value=6.1e-06 Score=80.20 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=44.5
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCcc
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV 137 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~v 137 (233)
+.++..|++.|+|||||||+|+.+++..|..+|+.+++ ... ...-..+++.+.+|..|
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l-g~~----~~~~~~a~~~L~~G~sV 423 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL-GST----QNCLTACERALDQGKRC 423 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH-HHH----HHHHHHHHHHHhCCCcE
Confidence 34667899999999999999999999999999998664 221 11234566778888765
No 125
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.99 E-value=4.4e-05 Score=63.67 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
+..|+|+||+||||+|+++.|.+.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 45788999999999999999999874
No 126
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.99 E-value=9.5e-05 Score=62.21 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC--EEecchhHhhcCCC-----C------------Ch--------HHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSP-----R------------SS--------LHKQIANAV 131 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~--~Is~~dllr~~i~~-----~------------s~--------lg~~i~~~l 131 (233)
..|+|-|+|-|||||+|+.|.+.+.-| |+++++++.. +.. . .+ +...++.+.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a 80 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM-MPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA 80 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH-S-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh-cCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999776 5666665542 221 1 01 122345566
Q ss_pred hcCCcc-chHHH------HHHHHHHHHccCCCCeEEEE-ecchHHHHHHHHHHHhccHHHHH-HH----hcCcEEEEeCC
Q 026804 132 NRGEVV-SEDII------FGLLSKRLEDGYYRDNFIVT-NRGGSLKEKLEAYAELSKPLEDY-YQ----KQKKLLEFQVG 198 (233)
Q Consensus 132 ~~G~~v-pdei~------~~li~~rL~~~~~~~GfILV-D~~e~i~~RL~~y~~~~~~l~~~-Y~----~~~~l~~Ida~ 198 (233)
+.|..| -|+++ .+.+++.|... .--||-| ...|++.+|=...-+....+... |+ ....=+.||++
T Consensus 81 ~aG~~VIvD~v~~~~~~l~d~l~~~L~~~--~vl~VgV~Cpleil~~RE~~RgDR~~G~a~~q~~~Vh~~~~YDleVDTs 158 (174)
T PF07931_consen 81 RAGNNVIVDDVFLGPRWLQDCLRRLLAGL--PVLFVGVRCPLEILERRERARGDRPIGLAAWQAEHVHEGGRYDLEVDTS 158 (174)
T ss_dssp HTT-EEEEEE--TTTHHHHHHHHHHHTTS---EEEEEEE--HHHHHHHHHHHTSSSTTHHHHHTTGGGTT---SEEEETT
T ss_pred hCCCCEEEecCccCcHHHHHHHHHHhCCC--ceEEEEEECCHHHHHHHHHhcCCcchHHHHHHHhhcccCCCCCEEEECC
Confidence 777644 34443 23333333311 1123435 45677777776654433333221 11 00011689987
Q ss_pred -CCHHHHHHHHHHHHh
Q 026804 199 -SAPVETWQGLLTALH 213 (233)
Q Consensus 199 -~~~~eV~~~I~~~L~ 213 (233)
.+++|..+.|++.|+
T Consensus 159 ~~sp~ecA~~I~~~~~ 174 (174)
T PF07931_consen 159 ATSPEECAREILARLE 174 (174)
T ss_dssp SS-HHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHhC
Confidence 789999999988764
No 127
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.94 E-value=0.00034 Score=60.37 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=46.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV 131 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l 131 (233)
+.+-+.|.-||||||+++.+. ++|++.|+.+.+.|+...++++-++.+.+.+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~F 53 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAF 53 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHh
Confidence 456789999999999999997 9999999999999999999998888777654
No 128
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=6.3e-05 Score=66.93 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=36.4
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i 117 (233)
..++..|+|-|+||+||||+|..||.++|+.++--.|.+|+.+
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvl 128 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVL 128 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHH
Confidence 4567889999999999999999999999999876667676643
No 129
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.90 E-value=1.1e-05 Score=57.24 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCCEEe
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL---EVPRIS 108 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~---gl~~Is 108 (233)
.|+|+|+|||||||+++.|++.+ ++.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 37899999999999999999994 444443
No 130
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.86 E-value=2.1e-05 Score=68.91 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
..++|.||||+||||+|..||+.+|..+..+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 3689999999999999999999999876544
No 131
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.86 E-value=1.6e-05 Score=67.52 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=32.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC---CCEEecchhHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVR 114 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g---l~~Is~~dllr 114 (233)
.++++|.|.|++||||||+++.|++.++ +..++.++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 5788999999999999999999999983 45677776654
No 132
>PLN02772 guanylate kinase
Probab=97.85 E-value=0.00016 Score=68.08 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+...++|+||+||||+|+.++|.+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 55689999999999999999998865
No 133
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.84 E-value=1.4e-05 Score=61.34 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~ 102 (233)
|+|.|+|||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 134
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.83 E-value=1.4e-05 Score=67.89 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=32.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCEEecchhHhh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQ 115 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~-gl~~Is~~dllr~ 115 (233)
.|.|.|+|||||||+|+.|++.+ ++.+|++++....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 36789999999999999999999 7899999988754
No 135
>PLN02165 adenylate isopentenyltransferase
Probab=97.81 E-value=2.7e-05 Score=71.67 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=33.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dl 112 (233)
.++..|+|+||+|||||++|..|++.++...|+.|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 4566899999999999999999999999999998776
No 136
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.78 E-value=2.4e-05 Score=72.76 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=35.3
Q ss_pred cccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 51 AESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 51 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
+++..+++..-+...+. |.. .+...++|.|||||||||+|+.|++.++.
T Consensus 56 ~~~~i~~lv~~l~~~a~----g~~-~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 56 MEEAIERFVNYFKSAAQ----GLE-ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cHHHHHHHHHHHHHHHh----cCC-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 66666666554433322 333 34467899999999999999999999976
No 137
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.77 E-value=2.8e-05 Score=66.18 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=32.4
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhC---CCEEecchhH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIV 113 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~g---l~~Is~~dll 113 (233)
|.++..|.|.|++||||||+++.|+..++ +.++++++.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 45788999999999999999999999885 4567776643
No 138
>CHL00181 cbbX CbbX; Provisional
Probab=97.75 E-value=0.00044 Score=62.31 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=24.8
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+.++..++|.||||+||||+|+.+++.+
T Consensus 56 ~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 56 SNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3457789999999999999999998875
No 139
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.74 E-value=0.00081 Score=55.20 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+++.|+||+||||++..++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 140
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.74 E-value=0.00018 Score=63.24 Aligned_cols=117 Identities=16% Similarity=0.294 Sum_probs=56.2
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCC-----EEecchh-----------HhhcCCCCChHHHHHHHHHhcCCccchHHHH---
Q 026804 83 FIGSPRAKKHVYAEMLSKLLEVP-----RISMSSI-----------VRQDLSPRSSLHKQIANAVNRGEVVSEDIIF--- 143 (233)
Q Consensus 83 liGpPGSGKsTlA~~La~~~gl~-----~Is~~dl-----------lr~~i~~~s~lg~~i~~~l~~G~~vpdei~~--- 143 (233)
|+|||||||||+++.+.+.+... .|+++-- +|+.+ ..++.|++-.+-|...+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i--------~~~evm~~~~LGPNGal~~~m 72 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLI--------SVEEVMEEYGLGPNGALIYCM 72 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT----------HHHHHTT-T--HHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhh--------hhhhhhhhcCcCCcHHHHHHH
Confidence 68999999999999999998432 2222110 12211 234444443443432221
Q ss_pred H-------HHHHHHHccCCCCeEEEEecchHHHHHHHHHHHhccHHHHHHHhcC---cEEEEeCC--CCHHHHHHHHHHH
Q 026804 144 G-------LLSKRLEDGYYRDNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQK---KLLEFQVG--SAPVETWQGLLTA 211 (233)
Q Consensus 144 ~-------li~~rL~~~~~~~GfILVD~~e~i~~RL~~y~~~~~~l~~~Y~~~~---~l~~Ida~--~~~~eV~~~I~~~ 211 (233)
+ -+.+.+.+. ...|+|+|.|..+ ++-.+......+.+...+.. .++.+|+. .++......++..
T Consensus 73 e~l~~~~d~l~~~i~~~--~~~y~l~DtPGQi--Elf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s 148 (238)
T PF03029_consen 73 EYLEENIDWLDEEIEKY--EDDYLLFDTPGQI--ELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLS 148 (238)
T ss_dssp HHHGGGHHHHHHHHHHH--H-SEEEEE--SSH--HHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--CCcEEEEeCCCCE--EEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHH
Confidence 1 113333322 2378999998855 33334444444555554322 35677875 5566655554443
No 141
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.73 E-value=2.7e-05 Score=58.79 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
+..++|.||||+||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3578999999999999999999998664
No 142
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.71 E-value=0.00018 Score=55.66 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=45.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh--------CCCEEecchhHhhcCCCCChHHHHHHHHHhcCCcc--chHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL--------EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV--SEDIIFGLLS 147 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~--------gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~v--pdei~~~li~ 147 (233)
+-.++|.|+||+|||++++.+++.+ +...+.+. + .... ....+...+.+.+.....- ..+-..+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~ 80 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-C-PSSR-TPRDFAQEILEALGLPLKSRQTSDELRSLLI 80 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-H-HHHS-SHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-e-CCCC-CHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence 4478899999999999999999987 44333221 1 1111 1123444444444333222 2222335666
Q ss_pred HHHHccCCCCeEEEEecchHH
Q 026804 148 KRLEDGYYRDNFIVTNRGGSL 168 (233)
Q Consensus 148 ~rL~~~~~~~GfILVD~~e~i 168 (233)
+.+.+... .+|+||.-+.+
T Consensus 81 ~~l~~~~~--~~lviDe~~~l 99 (131)
T PF13401_consen 81 DALDRRRV--VLLVIDEADHL 99 (131)
T ss_dssp HHHHHCTE--EEEEEETTHHH
T ss_pred HHHHhcCC--eEEEEeChHhc
Confidence 66665432 45556877766
No 143
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.70 E-value=2.3e-05 Score=63.87 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR 114 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr 114 (233)
+|+|+|+||+||||+++.|+++ |++++ .+..|
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar 32 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAR 32 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHH
Confidence 6899999999999999999999 88877 44443
No 144
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.69 E-value=4.8e-05 Score=69.32 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=32.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dl 112 (233)
++..|+|+||+|||||++|..|+++++...|+.+.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 346899999999999999999999999999998763
No 145
>PLN02840 tRNA dimethylallyltransferase
Probab=97.69 E-value=6.2e-05 Score=71.34 Aligned_cols=36 Identities=28% Similarity=0.163 Sum_probs=32.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecch
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~d 111 (233)
.+++.|+|.||+||||||+|..|+++++.++|+.+.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 346679999999999999999999999998888865
No 146
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.68 E-value=0.00076 Score=61.00 Aligned_cols=29 Identities=21% Similarity=0.011 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
..|+|.|++||||||+++.|. ..|+.+++
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d 35 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALE-DLGYYCVD 35 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HcCCeEEC
Confidence 478999999999999999996 55877664
No 147
>PRK07667 uridine kinase; Provisional
Probab=97.66 E-value=3.9e-05 Score=64.83 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=32.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecchhHhh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQ 115 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~dllr~ 115 (233)
+.+.|.|.|+|||||||+|+.|++.++ +..+++++.+..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 448999999999999999999999873 448888887654
No 148
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.66 E-value=6.5e-05 Score=66.25 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+...++|.||||+||||+|+.+++.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999999875
No 149
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.66 E-value=4.8e-05 Score=60.15 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=25.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
++|.||||+|||++++.|++.++.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i 30 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRI 30 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEE
Confidence 78999999999999999999998876543
No 150
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.64 E-value=5.8e-05 Score=63.90 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=30.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh---CCCEEecchhHhhcC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDL 117 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~---gl~~Is~~dllr~~i 117 (233)
.+|..+++.|+|||||||++..+.+.+ ++.+|+.++ +++.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~-~r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADE-FRQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGG-GGGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHH-HHHhc
Confidence 567889999999999999999999987 677888755 55554
No 151
>COG0645 Predicted kinase [General function prediction only]
Probab=97.61 E-value=0.0004 Score=58.20 Aligned_cols=96 Identities=22% Similarity=0.190 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCC-----C------C---------hHHHHHHHHHhcCCccc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSP-----R------S---------SLHKQIANAVNRGEVVS 138 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~-----~------s---------~lg~~i~~~l~~G~~vp 138 (233)
..+++.|-||+||||+|+.|++.+|..+|..+ .+|+.+.. . + .+......++..|..|.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD-~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VV 80 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSD-VIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSVV 80 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehH-HHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 46789999999999999999999999999974 55665543 1 0 12223445567776553
Q ss_pred hHHH------HHHHHHHHHccCCCCeEEEE---ecchHHHHHHHHHHH
Q 026804 139 EDII------FGLLSKRLEDGYYRDNFIVT---NRGGSLKEKLEAYAE 177 (233)
Q Consensus 139 dei~------~~li~~rL~~~~~~~GfILV---D~~e~i~~RL~~y~~ 177 (233)
-+-. .+.+..... .+.--|.+| ..++++..|+..++.
T Consensus 81 lDa~~~r~~~R~~~~~~A~--~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 81 LDATFDRPQERALARALAR--DVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred EecccCCHHHHHHHHHHHh--ccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 2211 122221111 122335554 346788999988765
No 152
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.60 E-value=0.00053 Score=66.03 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
.-++|.||||+|||++++.|+...+++++.+.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence 35889999999999999999999999887653
No 153
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.60 E-value=0.00064 Score=59.25 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=46.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHh-hcCCCCCh--HHH---------HHHHHHhcCCccchHHHHHHHH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVR-QDLSPRSS--LHK---------QIANAVNRGEVVSEDIIFGLLS 147 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr-~~i~~~s~--lg~---------~i~~~l~~G~~vpdei~~~li~ 147 (233)
.++|.||+|+|||.+|-.||+++|.|.|+.+.+.- ..+..++. ... .-...+.+|..-+++ ..+.+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~e-a~~~Li 81 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEE-AHERLI 81 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHH-HHHHHH
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHH-HHHHHH
Confidence 67899999999999999999999999999875432 22222221 000 013346677743444 455556
Q ss_pred HHHHccCCCCeEEE
Q 026804 148 KRLEDGYYRDNFIV 161 (233)
Q Consensus 148 ~rL~~~~~~~GfIL 161 (233)
+++......+|+||
T Consensus 82 ~~v~~~~~~~~~Il 95 (233)
T PF01745_consen 82 SEVNSYSAHGGLIL 95 (233)
T ss_dssp HHHHTTTTSSEEEE
T ss_pred HHHHhccccCceEE
Confidence 67776655667777
No 154
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.59 E-value=6.7e-05 Score=71.17 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=31.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecch
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~d 111 (233)
.+..|+|+||||+|||++|+.|++.++.+++.++.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 45689999999999999999999999999988763
No 155
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.57 E-value=0.00014 Score=69.17 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=31.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecch
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~d 111 (233)
.+..|+|+||||+|||++|+.|++.++++++.++-
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 35789999999999999999999999999888753
No 156
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.57 E-value=0.0016 Score=58.45 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+..++|.||||+||||+|+.+++.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 35579999999999999998888765
No 157
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00083 Score=63.86 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=46.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh----CC-CEEecchhHhhcCCCCChHHHHHHHHHhcCCc--cchHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL----EV-PRISMSSIVRQDLSPRSSLHKQIANAVNRGEV--VSEDIIFGLLSK 148 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~----gl-~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~--vpdei~~~li~~ 148 (233)
.++..++|+||+||||||++..|+..+ |. +++...|..|.. ...+++.+.+.... .+.... .-+.+
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~a------A~eQLk~yAe~lgvp~~~~~~~-~~l~~ 293 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIA------AIEQLKRYADTMGMPFYPVKDI-KKFKE 293 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhh------HHHHHHHHHHhcCCCeeehHHH-HHHHH
Confidence 356789999999999999999999865 22 444555665542 12345555444322 111112 22333
Q ss_pred HHHccCCCCeEEEEecc
Q 026804 149 RLEDGYYRDNFIVTNRG 165 (233)
Q Consensus 149 rL~~~~~~~GfILVD~~ 165 (233)
.+.. ....+||||++
T Consensus 294 ~l~~--~~~D~VLIDTa 308 (432)
T PRK12724 294 TLAR--DGSELILIDTA 308 (432)
T ss_pred HHHh--CCCCEEEEeCC
Confidence 4442 23357888864
No 158
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.53 E-value=0.00012 Score=59.47 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=27.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCCEEec-chhHhhc
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLL---EVPRISM-SSIVRQD 116 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~---gl~~Is~-~dllr~~ 116 (233)
++|.|+|||||||+|+.|++.+ +...+.+ +|-+++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~ 41 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHG 41 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHh
Confidence 6899999999999999999998 6543332 3555543
No 159
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.52 E-value=7.3e-05 Score=62.63 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=30.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecchhHhh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQ 115 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~dllr~ 115 (233)
.|.|.|+|||||||+|+.|++.+ ++..|++++..+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 37899999999999999999996 4568888888763
No 160
>PHA00729 NTP-binding motif containing protein
Probab=97.52 E-value=9.3e-05 Score=64.76 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
..|+|+|+||+||||+|..|+++++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999875
No 161
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.51 E-value=0.00012 Score=59.08 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=34.1
Q ss_pred ccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 52 ESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 52 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
+++..++++.++... ..+..|+|.|+.|+||||+++.+++.+|+.
T Consensus 5 ~~~t~~l~~~l~~~l---------~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 5 EKAMDKFGKAFAKPL---------DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHHHHHHhC---------CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 455666666554321 245689999999999999999999999864
No 162
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.49 E-value=8.6e-05 Score=62.40 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCCEEecchhHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVR 114 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~---gl~~Is~~dllr 114 (233)
.|.|.|++||||||+++.|+..+ ++.++++++...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 36799999999999999999987 466788877653
No 163
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00044 Score=64.27 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=36.7
Q ss_pred ccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 64 SVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 64 ~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
..|..+..|.--..+.-|++.||||+|||-+|+.+|++-|..+|++
T Consensus 113 r~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 113 RRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred cchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 4566666565544566799999999999999999999998887664
No 164
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.48 E-value=0.0028 Score=56.71 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=23.9
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..++..|+|+|+||+||||.+..||..+
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3456688889999999999999999877
No 165
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.47 E-value=0.00012 Score=66.16 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=29.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEecch
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~gl~~Is~~d 111 (233)
|+|+||+|||||++|..|++.++..+||+++
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 7899999999999999999999999999876
No 166
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.44 E-value=0.0002 Score=54.77 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCEEec
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISM 109 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~---gl~~Is~ 109 (233)
..++|.|+||+|||++++.+++.+ +.+++.+
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 468899999999999999999988 5555443
No 167
>PTZ00301 uridine kinase; Provisional
Probab=97.44 E-value=0.00011 Score=63.50 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC-------CCEEecchhHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVR 114 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g-------l~~Is~~dllr 114 (233)
+-+.|-|.|+|||||||+|+.|+++++ +..+++++..+
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 346889999999999999999988762 23556666544
No 168
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.0002 Score=62.26 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=33.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCC---EEecchhHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP---RISMSSIVR 114 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~---~Is~~dllr 114 (233)
.+.+.|-|-|++||||||+|+.|++.++.. .|+.++...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk 47 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYK 47 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccccc
Confidence 466889999999999999999999999855 677776654
No 169
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.43 E-value=0.00014 Score=61.27 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.|.|.|+|||||||+|+.|++.++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999996
No 170
>PRK06761 hypothetical protein; Provisional
Probab=97.42 E-value=0.00015 Score=65.40 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
++.|+|.|+|||||||+++.|+++++...+++
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 35799999999999999999999997654443
No 171
>PLN02748 tRNA dimethylallyltransferase
Probab=97.42 E-value=0.00014 Score=69.79 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=32.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecch
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~d 111 (233)
.++..|+|+||+|||||++|..||++++...|+.+.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 345689999999999999999999999999998864
No 172
>PRK15453 phosphoribulokinase; Provisional
Probab=97.42 E-value=0.00036 Score=63.09 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=29.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecchh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSI 112 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~dl 112 (233)
.++..|.|.|.|||||||+|+.|++.++ ...|+.++.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~y 44 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSF 44 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 4678999999999999999999998774 345665443
No 173
>PRK05439 pantothenate kinase; Provisional
Probab=97.42 E-value=0.00016 Score=66.15 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=33.0
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhC-------CCEEecchhHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIVR 114 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~g-------l~~Is~~dllr 114 (233)
..+++.|.|.|+|||||||+|+.|++.++ +..|++++.+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 45678999999999999999999998663 45788887663
No 174
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.41 E-value=0.00017 Score=66.69 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=29.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCC------CEEecchhHh
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLEV------PRISMSSIVR 114 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~gl------~~Is~~dllr 114 (233)
++|.|+|||||||+++.|++.+.. .+++.+|++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 689999999999999999988753 4899999884
No 175
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.38 E-value=0.00017 Score=66.31 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
.|+|.|+||+||||+++.||+++|++++.+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~rV 95 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVRV 95 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence 699999999999999999999999988743
No 176
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.00021 Score=67.13 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=39.2
Q ss_pred HhhhccccccccccCcc----cC----------CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecch
Q 026804 58 HRDSLRSVTLPDTEGRE----RR----------RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (233)
Q Consensus 58 ~~~~~~~~~~~~~~~~~----~~----------~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~d 111 (233)
|+..++|+.-.+.+|.. +. +-...+|-||||+||||+|+.|++..+..++-++-
T Consensus 14 LA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred hHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence 55556666666665542 21 22357899999999999999999999988776543
No 177
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.36 E-value=0.00016 Score=60.34 Aligned_cols=28 Identities=21% Similarity=0.128 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEE
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~I 107 (233)
.|+|.|++||||||+++.|++++|+.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 3789999999999999999999887554
No 178
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.34 E-value=0.00027 Score=66.25 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=32.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEE--ecchhHhhc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVRQD 116 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~I--s~~dllr~~ 116 (233)
..+..+.|.||||+|||.+|+.+++.+|++.| +.++|+...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34567788999999999999999999998765 445666543
No 179
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0002 Score=70.43 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=33.2
Q ss_pred cccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 69 DTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 69 ~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
.+.|-.|.|| ++|.||||||||.+|+.||..+|+|++++.
T Consensus 216 ~~lGv~PprG--vLlHGPPGCGKT~lA~AiAgel~vPf~~is 255 (802)
T KOG0733|consen 216 SSLGVRPPRG--VLLHGPPGCGKTSLANAIAGELGVPFLSIS 255 (802)
T ss_pred hhcCCCCCCc--eeeeCCCCccHHHHHHHHhhhcCCceEeec
Confidence 3445556565 678999999999999999999999998864
No 180
>PRK07429 phosphoribulokinase; Provisional
Probab=97.34 E-value=0.00026 Score=65.14 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=33.7
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHhC---CCEEecchhH
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIV 113 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~g---l~~Is~~dll 113 (233)
...+++.|.|.|++||||||+++.|++.++ ...|++++..
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 346789999999999999999999999987 5567777753
No 181
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.33 E-value=0.0023 Score=58.66 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++..|.|+||+|+||||.+..||..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356789999999999999999999887
No 182
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.30 E-value=0.00021 Score=62.44 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCE-EecchhHhhcC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPR-ISMSSIVRQDL 117 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~-Is~~dllr~~i 117 (233)
|.|.|.|.|||||||+|+.+.++ |.++ ++++|-++..+
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l 39 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEIL 39 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHH
Confidence 57899999999999999999665 5566 99999888753
No 183
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.30 E-value=0.00028 Score=62.44 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
..++|.|+||+|||++|+.|++.+|.+++.+
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4678999999999999999999999887743
No 184
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.27 E-value=0.0052 Score=51.26 Aligned_cols=79 Identities=16% Similarity=0.141 Sum_probs=44.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC--EEecchhHhhcCCCCChHHHHHHHHH--hcCCccchHHHHHHHHHHHHccCCC
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVRQDLSPRSSLHKQIANAV--NRGEVVSEDIIFGLLSKRLEDGYYR 156 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~gl~--~Is~~dllr~~i~~~s~lg~~i~~~l--~~G~~vpdei~~~li~~rL~~~~~~ 156 (233)
++|+|+||||||++|..++...+-+ ++.+..-+ +.++.+.++... +...+.+.|...++ .+.+.+.. .
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~------d~em~~rI~~H~~~R~~~w~t~E~~~~l-~~~l~~~~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAF------DDEMAERIARHRKRRPAHWRTIETPRDL-VSALKELD-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcC------CHHHHHHHHHHHHhCCCCceEeecHHHH-HHHHHhcC-C
Confidence 6899999999999999999886644 44433211 223334443332 12234444544443 33454432 3
Q ss_pred CeEEEEecchH
Q 026804 157 DNFIVTNRGGS 167 (233)
Q Consensus 157 ~GfILVD~~e~ 167 (233)
.+.||||.-..
T Consensus 74 ~~~VLIDclt~ 84 (169)
T cd00544 74 GDVVLIDCLTL 84 (169)
T ss_pred CCEEEEEcHhH
Confidence 45788765433
No 185
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.27 E-value=0.0002 Score=61.98 Aligned_cols=30 Identities=37% Similarity=0.477 Sum_probs=26.4
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
++.++..+.|.|++||||||+++.|+..+.
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345788999999999999999999999874
No 186
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.27 E-value=0.0033 Score=56.69 Aligned_cols=117 Identities=12% Similarity=0.201 Sum_probs=65.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc--hhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~--dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~ 155 (233)
|.++++.||||.|||..|+.||...++|.+.+. +|+-+.. -.|. ..+.++. +|-.+.
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV--------------Gdga----r~Ihely-~rA~~~-- 209 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV--------------GDGA----RRIHELY-ERARKA-- 209 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh--------------hhHH----HHHHHHH-HHHHhc--
Confidence 458999999999999999999999999988763 3333222 1111 0112222 122211
Q ss_pred CCeEEEEecchH--HHHHHHHHHHhccHHHH----HHH---hcCcEEEEeCCCCHHHHHHHHHHHHhhc
Q 026804 156 RDNFIVTNRGGS--LKEKLEAYAELSKPLED----YYQ---KQKKLLEFQVGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 156 ~~GfILVD~~e~--i~~RL~~y~~~~~~l~~----~Y~---~~~~l~~Ida~~~~~eV~~~I~~~L~~~ 215 (233)
....|++|.-+. +.+|.+.-+-....+.+ -.+ +..-+++|.+++.|+-+-..|.+..+.+
T Consensus 210 aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeE 278 (368)
T COG1223 210 APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEE 278 (368)
T ss_pred CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhhe
Confidence 122444554333 34555554332222222 121 2223688888888887777777766543
No 187
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.25 E-value=0.00029 Score=66.66 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
..++|.||||+|||++|+.|++.++.+++.++
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 47899999999999999999999999887653
No 188
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.24 E-value=0.00025 Score=61.39 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=27.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC-------CCEEecchhH
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV 113 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~g-------l~~Is~~dll 113 (233)
|-|.|++||||||+|+.|+..++ +..|++++..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 66899999999999999999883 3467777654
No 189
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00061 Score=67.30 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=34.9
Q ss_pred cCcccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhHhhcC
Q 026804 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDL 117 (233)
Q Consensus 71 ~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dllr~~i 117 (233)
+|-.|. .-|++.||||||||++|+.||..-+.+++++ .+|+-...
T Consensus 463 ~Gi~pp--kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v 509 (693)
T KOG0730|consen 463 FGISPP--KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV 509 (693)
T ss_pred hcCCCC--ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc
Confidence 343443 4688999999999999999999999888887 35665443
No 190
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.23 E-value=0.00035 Score=63.25 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=30.1
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhC-------CCEEecchhH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSIV 113 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~g-------l~~Is~~dll 113 (233)
..++..|.|.|++||||||+|+.|...+. +..+++++..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 35678999999999999999998877663 3456666544
No 191
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.23 E-value=0.00033 Score=65.91 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
...++|.||||+||||+|+.|++..+..++.++
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 347889999999999999999999988776653
No 192
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0018 Score=61.00 Aligned_cols=132 Identities=9% Similarity=0.084 Sum_probs=66.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEecc--hhHhhcCCCCChHHHHHHHHHhcC-CccchHHHHHHHHHHHHccCCCC
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLSPRSSLHKQIANAVNRG-EVVSEDIIFGLLSKRLEDGYYRD 157 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~gl~~Is~~--dllr~~i~~~s~lg~~i~~~l~~G-~~vpdei~~~li~~rL~~~~~~~ 157 (233)
+++.||||+|||.+|+.+|-.-|..++++. +|.-+ .+.+++ +.++-.+.-- ...|.-+.++-|..-..+. +
T Consensus 248 vLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK-wRGeSE--KlvRlLFemARfyAPStIFiDEIDslcs~R---G 321 (491)
T KOG0738|consen 248 VLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK-WRGESE--KLVRLLFEMARFYAPSTIFIDEIDSLCSQR---G 321 (491)
T ss_pred eeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh-hccchH--HHHHHHHHHHHHhCCceeehhhHHHHHhcC---C
Confidence 788999999999999999999998776654 33322 122221 1111000000 0011111111111101100 0
Q ss_pred eEEEEecchHHHHHHHH-HHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhhccccCcCC
Q 026804 158 NFIVTNRGGSLKEKLEA-YAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQHINAAYS 222 (233)
Q Consensus 158 GfILVD~~e~i~~RL~~-y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~~~~~~~~~ 222 (233)
+ +++-+.-+|++. .-.+...+..-......+.+.-+++-|+++-+-+...++++..-+.++
T Consensus 322 ~----s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~ 383 (491)
T KOG0738|consen 322 G----SSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPD 383 (491)
T ss_pred C----ccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCC
Confidence 0 123344556542 233344444333333345666667888888888888888776544443
No 193
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.0025 Score=59.93 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
++..|+++||+|+||||.+..||..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998763
No 194
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.011 Score=49.67 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=35.4
Q ss_pred ecchHHHHHHHHHH-HhccHHHHH------HH-hcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 163 NRGGSLKEKLEAYA-ELSKPLEDY------YQ-KQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 163 D~~e~i~~RL~~y~-~~~~~l~~~------Y~-~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
..++++.+||...- ++.+.+..- |. .-+.+.+||-++..+..-+++++.|..
T Consensus 123 a~p~VLaqRL~~RGREs~eeI~aRL~R~a~~~~~~~dv~~idNsG~l~~ag~~ll~~l~~ 182 (192)
T COG3709 123 ASPEVLAQRLAERGRESREEILARLARAARYTAGPGDVTTIDNSGELEDAGERLLALLHQ 182 (192)
T ss_pred cCHHHHHHHHHHhccCCHHHHHHHHHhhcccccCCCCeEEEcCCCcHHHHHHHHHHHHHh
Confidence 67888888887653 222233321 22 224589999999999999898888874
No 195
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.20 E-value=0.0004 Score=65.50 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=28.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
...+|+|+|++||||||+++.|++++|...+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 34689999999999999999999999987653
No 196
>PF13173 AAA_14: AAA domain
Probab=97.20 E-value=0.00048 Score=54.15 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC----CCEEecchh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLE----VPRISMSSI 112 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~g----l~~Is~~dl 112 (233)
..++|.||.|+||||+++.+++.+. +.+++.++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 4788999999999999999998875 677777653
No 197
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.19 E-value=0.0004 Score=63.62 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=27.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEE
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~I 107 (233)
+.+|+|+|+||+||||+++.|++.+|.+++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 458999999999999999999999999874
No 198
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.19 E-value=0.00043 Score=64.81 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhHhh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQ 115 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dllr~ 115 (233)
+..|+|.||||+|||++|+.++..++.+++.+ .+++..
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 34688999999999999999999998876654 455443
No 199
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0012 Score=65.04 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc--hhHhhcC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDL 117 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~--dllr~~i 117 (233)
-=|++.||||||||.+|+.+|..-|..+|++. +|+-+.+
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYV 586 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYV 586 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHh
Confidence 35889999999999999999999999999874 6665543
No 200
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.18 E-value=0.00045 Score=66.80 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
+.-|+|.||||+|||.+|+.+|..+|++++.+
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34588999999999999999999999997765
No 201
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0023 Score=58.64 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=30.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEE--ecchhHhhcC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVRQDL 117 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~I--s~~dllr~~i 117 (233)
-|++.||||.|||.+|+.+|-.-|-.+. |.+||+.+.+
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 3788999999999999999999886655 4557776554
No 202
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00043 Score=69.06 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=42.6
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEE--ecchhHhh--cCC--C----CChHHHHHHHHHhcCC
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIVRQ--DLS--P----RSSLHKQIANAVNRGE 135 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~I--s~~dllr~--~i~--~----~s~lg~~i~~~l~~G~ 135 (233)
...+|.+++|+||||+|||++++-+|+.+|-+++ |+|-+ |. +|+ . |+--|+.++.+-+.|.
T Consensus 346 ~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGv-rDEAEIRGHRRTYIGamPGrIiQ~mkka~~ 416 (782)
T COG0466 346 KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGV-RDEAEIRGHRRTYIGAMPGKIIQGMKKAGV 416 (782)
T ss_pred ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcc-ccHHHhccccccccccCChHHHHHHHHhCC
Confidence 3467889999999999999999999999987664 55542 22 232 1 2334667776655553
No 203
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.00048 Score=57.92 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh-CCCEEecchhHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVR 114 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~-gl~~Is~~dllr 114 (233)
++++++.|-||+||||+.+...+.+ +...++.|++.-
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Ml 41 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLML 41 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHH
Confidence 4789999999999999999999998 878888888764
No 204
>PHA02244 ATPase-like protein
Probab=97.14 E-value=0.00047 Score=64.54 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dll 113 (233)
+..++|.||||+|||++|+.|+..+|.+++.+..+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 346888999999999999999999999999877654
No 205
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00032 Score=64.62 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
...|++.||||.|||++|+.||+++-+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 3468899999999999999999998654
No 206
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.13 E-value=0.00047 Score=65.31 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
-.++|.||||+|||++|+.|++.++++++..
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 4799999999999999999999999888643
No 207
>PF05729 NACHT: NACHT domain
Probab=97.11 E-value=0.00046 Score=54.94 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++|.|+||+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 57899999999999999999887
No 208
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.11 E-value=0.0016 Score=56.90 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=31.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC---C--CEEecchhHhhcC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---V--PRISMSSIVRQDL 117 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g---l--~~Is~~dllr~~i 117 (233)
...+.|+++|.|+.|||++|+.|+..++ + ...++|+.=|+..
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~ 56 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLS 56 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccc
Confidence 3568899999999999999999998764 3 3667777666543
No 209
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.11 E-value=0.00033 Score=68.94 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=35.4
Q ss_pred cccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 49 YQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 49 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
|-.|+..+++-.-+.+.+. |. ..++..++|+||||+||||+|+.|++.+.
T Consensus 79 yGlee~ieriv~~l~~Aa~----gl-~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 79 YGMEEAIEQIVSYFRHAAQ----GL-EEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cCcHHHHHHHHHHHHHHHH----hc-CCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 4566667776554432222 22 23557899999999999999999999874
No 210
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.10 E-value=0.00041 Score=55.60 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~g 103 (233)
|+|+||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 68999999999999999999864
No 211
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.10 E-value=0.00047 Score=57.46 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL---EVP 105 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~---gl~ 105 (233)
+|+|.|+||+||||+.+++.+.+ |++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~ 29 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLP 29 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGG
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCc
Confidence 58999999999999999999998 554
No 212
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.09 E-value=0.00056 Score=55.72 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=26.7
Q ss_pred ccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 52 ESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 52 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
|++++++...+. .. ....+..++|.|+||+|||++.+.+.+++
T Consensus 6 ~~e~~~l~~~l~-~~-------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 6 EEEIERLRDLLD-AA-------QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp HHHHHHHHHTTG-GT-------SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HH-------HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 566777776542 11 12345689999999999999999887776
No 213
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.08 E-value=0.00071 Score=62.51 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
+..++|.||||+|||++|+.+++.++.+++.+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 34588999999999999999999998877654
No 214
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.07 E-value=0.0083 Score=57.33 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++..|+|+|+||+||||.+..||..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 457789999999999999999999877
No 215
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0011 Score=61.72 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=42.3
Q ss_pred cCcccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhHhhcCCCCChHHHHH
Q 026804 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQDLSPRSSLHKQI 127 (233)
Q Consensus 71 ~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dllr~~i~~~s~lg~~i 127 (233)
.|=.|.| =+++.||||+|||.+|+..|.+.+..+|-+ ++++++.+-.+..+-+.+
T Consensus 180 ~GI~PPK--GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRel 236 (406)
T COG1222 180 LGIDPPK--GVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVREL 236 (406)
T ss_pred cCCCCCC--ceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHH
Confidence 3444545 477899999999999999999999988765 578888877666554443
No 216
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.04 E-value=0.00071 Score=61.79 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=40.9
Q ss_pred cccCCccCCCCcccccccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 34 AAAEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.....+|-|++. .-.|+|++.+...+.+... | .++..++|.||||+|||++++.+.+.+
T Consensus 6 ~~l~~~~~p~~l---~gRe~e~~~l~~~l~~~~~----~---~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 6 DLLEPDYVPDRI---VHRDEQIEELAKALRPILR----G---SRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred hhCCCCCCCCCC---CCcHHHHHHHHHHHHHHHc----C---CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 355677888753 2356777777765533211 2 244578999999999999999998764
No 217
>PLN02348 phosphoribulokinase
Probab=97.03 E-value=0.00074 Score=63.53 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=25.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.+++.|-|.|++||||||+|+.|++.+|
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999999999986
No 218
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.03 E-value=0.00086 Score=59.89 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCE
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~ 106 (233)
+..++|.||||+|||++|+.+++.++...
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 44688999999999999999999998754
No 219
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.03 E-value=0.00077 Score=63.55 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
+.-++|.||||+|||++|+.+|...+.+++.+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 44688999999999999999999999887765
No 220
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.01 E-value=0.00087 Score=56.23 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---C--CCEEecchhHhh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ 115 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~---g--l~~Is~~dllr~ 115 (233)
++..++|.|+||+|||.+|..++... | +.++++.+++..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 45679999999999999999998764 3 456777777754
No 221
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.00072 Score=58.62 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
.+.|+|-|+=|+||||+|+.||+++|.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~ 34 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFY 34 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceee
Confidence 4689999999999999999999999987664
No 222
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.00076 Score=64.93 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
.-++|.||||+||||+|+.+++.++.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35899999999999999999999875
No 223
>PLN02796 D-glycerate 3-kinase
Probab=96.99 E-value=0.00095 Score=61.87 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=31.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecchhH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV 113 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~dll 113 (233)
.++++|.|.|++||||||+++.|...+. ...|++++..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4678999999999999999999998874 3467777654
No 224
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.97 E-value=0.0034 Score=60.50 Aligned_cols=118 Identities=12% Similarity=0.074 Sum_probs=66.9
Q ss_pred cCcccCCceEEEEEcCCCCCHHHHHHHHHHHh---C--CCEEecchhHhhcCCCCChHHHHHHHHHhcCCcc--------
Q 026804 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV-------- 137 (233)
Q Consensus 71 ~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~---g--l~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~v-------- 137 (233)
.|.+-.++-.++|.|+||+||||++..++... | +.+++..+-..+.+.+-..+|-.+.+++.+|.+.
T Consensus 256 lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 256 CGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred hcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEccccc
Confidence 34555678899999999999999999987754 3 4567765544333322233444466666777432
Q ss_pred --chHHHHHHHHHHHHccCCCCeEEEEecchHHHHHH--HHHHHhccHHHHHHHhcCc
Q 026804 138 --SEDIIFGLLSKRLEDGYYRDNFIVTNRGGSLKEKL--EAYAELSKPLEDYYQKQKK 191 (233)
Q Consensus 138 --pdei~~~li~~rL~~~~~~~GfILVD~~e~i~~RL--~~y~~~~~~l~~~Y~~~~~ 191 (233)
+++.+. .+.+.+.+.. ...|+||+-..+..-+ ..+++....+.++.++.+.
T Consensus 336 ~~~~~~~~-~i~~~i~~~~--~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~i 390 (484)
T TIGR02655 336 AGLEDHLQ-IIKSEIADFK--PARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEI 390 (484)
T ss_pred CChHHHHH-HHHHHHHHcC--CCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCC
Confidence 134333 3344554432 2356677766553211 1122233345566666654
No 225
>PRK05642 DNA replication initiation factor; Validated
Probab=96.97 E-value=0.0039 Score=54.35 Aligned_cols=35 Identities=3% Similarity=0.022 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecchhH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV 113 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~dll 113 (233)
..++|.|++|+|||.+++.++..+ .+.+++..+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 357899999999999999987643 44567766654
No 226
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.001 Score=60.73 Aligned_cols=35 Identities=26% Similarity=0.184 Sum_probs=32.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dl 112 (233)
+..|+|+||.+||||-+|-.||+++|.+.||+|.+
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 45789999999999999999999999999998764
No 227
>COG4639 Predicted kinase [General function prediction only]
Probab=96.96 E-value=0.0043 Score=51.62 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dl 112 (233)
..++++|+|||||||+|+..- .....|+++++
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~ 34 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDL 34 (168)
T ss_pred eEEEEecCCCCchhHHHHHhC--CCcceecHHHH
Confidence 367899999999999998542 25567777664
No 228
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0011 Score=61.42 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
.-++|.||||+||||+|+.+++.++.
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 35789999999999999999999874
No 229
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.95 E-value=0.0029 Score=54.68 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=62.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----C--CCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHc
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL-----E--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED 152 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~-----g--l~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~ 152 (233)
-++|.|++|+|||.+.+.++..+ + +.+++..++.+. +...+..+.. .+ +.+++..
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-----------~~~~~~~~~~------~~-~~~~~~~ 97 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-----------FADALRDGEI------EE-FKDRLRS 97 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-----------HHHHHHTTSH------HH-HHHHHCT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-----------HHHHHHcccc------hh-hhhhhhc
Confidence 47899999999999999997764 2 345655554432 3333444321 11 2234443
Q ss_pred cCCCCeEEEEecchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHH---HHHHHHHHhh
Q 026804 153 GYYRDNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVET---WQGLLTALHL 214 (233)
Q Consensus 153 ~~~~~GfILVD~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV---~~~I~~~L~~ 214 (233)
-..+++|+.+.+..+ ...++..-.+.+...++++.+.|-++..|.++ -+++.+.+..
T Consensus 98 ----~DlL~iDDi~~l~~~-~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~ 157 (219)
T PF00308_consen 98 ----ADLLIIDDIQFLAGK-QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW 157 (219)
T ss_dssp ----SSEEEEETGGGGTTH-HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC
T ss_pred ----CCEEEEecchhhcCc-hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh
Confidence 335666776666443 12233444455555566666666666666553 3455555543
No 230
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.94 E-value=0.00065 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~g 103 (233)
|+|.|+||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988753
No 231
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.94 E-value=0.0022 Score=54.99 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=27.6
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecch
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS 111 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~d 111 (233)
+-.++-.++|.|+||+||||++..++... ++.+++..+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 34467799999999999999998876432 244666543
No 232
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.94 E-value=0.0011 Score=53.10 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=27.6
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..|.|++.+.+.|+||+||+.+++.||+.+
T Consensus 48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 358899999999999999999999999984
No 233
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.92 E-value=0.00072 Score=60.59 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..|+|+|.|||||||+|+.|++.+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 378999999999999999999985
No 234
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.92 E-value=0.0015 Score=56.42 Aligned_cols=40 Identities=13% Similarity=-0.052 Sum_probs=29.0
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecchh
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSI 112 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~dl 112 (233)
.+-.++-.++|.|+||||||+++..++... .+.++++.+-
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 334467788899999999999999986542 3456666443
No 235
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.92 E-value=0.00092 Score=50.79 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~g 103 (233)
+|+|+|++||||||+.+.|+....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999987653
No 236
>PRK05973 replicative DNA helicase; Provisional
Probab=96.91 E-value=0.002 Score=56.79 Aligned_cols=46 Identities=9% Similarity=-0.018 Sum_probs=32.1
Q ss_pred ccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHh---CC--CEEecc
Q 026804 64 SVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMS 110 (233)
Q Consensus 64 ~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~---gl--~~Is~~ 110 (233)
..|.....| +-.++-.++|.|+||+|||++|..++..- |- .++++.
T Consensus 51 ~~p~~~l~G-Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 51 TTPAEELFS-QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCHHHhcC-CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 344444433 44577789999999999999999887643 43 456654
No 237
>PF13245 AAA_19: Part of AAA domain
Probab=96.91 E-value=0.0011 Score=48.25 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHH-HHHHHHHHHh
Q 026804 80 HWAFIGSPRAKKH-VYAEMLSKLL 102 (233)
Q Consensus 80 ~IvliGpPGSGKs-TlA~~La~~~ 102 (233)
..+|.|||||||| |+++.++..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677999999999 5555555555
No 238
>PTZ00202 tuzin; Provisional
Probab=96.91 E-value=0.0071 Score=58.23 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=33.2
Q ss_pred ccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCE
Q 026804 52 ESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (233)
Q Consensus 52 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~ 106 (233)
|+|..+++..+... . ... +..++|.|++|+||||+++.+....+.+.
T Consensus 268 eaEla~Lr~VL~~~-d----~~~---privvLtG~~G~GKTTLlR~~~~~l~~~q 314 (550)
T PTZ00202 268 EAEESWVRQVLRRL-D----TAH---PRIVVFTGFRGCGKSSLCRSAVRKEGMPA 314 (550)
T ss_pred HHHHHHHHHHHhcc-C----CCC---ceEEEEECCCCCCHHHHHHHHHhcCCceE
Confidence 56677776644211 1 112 23889999999999999999998888553
No 239
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.90 E-value=0.0012 Score=55.05 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
..++|+||+|+|||.+|+.|++.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47889999999999999999999985
No 240
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.89 E-value=0.00052 Score=56.40 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=24.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh-----CCCEEecch
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS 111 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~d 111 (233)
++|.|+||+|||+++..++... .+.++++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 6899999999999999886653 345677654
No 241
>PRK04195 replication factor C large subunit; Provisional
Probab=96.88 E-value=0.0011 Score=63.65 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=28.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
+..++|.||||+||||+|+.|++.+++.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45788999999999999999999999887755
No 242
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.87 E-value=0.0013 Score=59.97 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
..++|.||||+|||++|+.+++.++.....
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 468899999999999999999999886543
No 243
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.86 E-value=0.001 Score=67.78 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
++..++|+||||+||||+++.+++.++.+++.+
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i 380 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM 380 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 556899999999999999999999999887543
No 244
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.85 E-value=0.0011 Score=56.46 Aligned_cols=32 Identities=25% Similarity=0.200 Sum_probs=26.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~ 109 (233)
|..|+|+||+|+||||.+-+||.++. +..|++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecC
Confidence 45789999999999999999998873 345665
No 245
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.85 E-value=0.0014 Score=62.68 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
+..++|.||||+|||++|+.++..++.+++.+
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 34588899999999999999999998877654
No 246
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.85 E-value=0.00095 Score=56.71 Aligned_cols=36 Identities=8% Similarity=0.065 Sum_probs=27.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecchh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSI 112 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~dl 112 (233)
.+..++|.|+||+|||++|+.+++... +.+++..++
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 345788999999999999999998762 345555444
No 247
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.84 E-value=0.0024 Score=57.48 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecchhHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR 114 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~dllr 114 (233)
.|.|.|++||||||+++.|.+.++ +..|+.++.-+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 377999999999999999998773 34677666544
No 248
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0013 Score=60.65 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
-+|+++||.|||||.+|+.||+.+++|+--.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 4799999999999999999999999998643
No 249
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.84 E-value=0.0011 Score=67.30 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
++..++|.||||+|||++|+.||+.++.+++.+
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i 378 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF 378 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEE
Confidence 445799999999999999999999998877543
No 250
>PRK06526 transposase; Provisional
Probab=96.84 E-value=0.001 Score=59.01 Aligned_cols=38 Identities=21% Similarity=0.116 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---C--CCEEecchhHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVR 114 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~---g--l~~Is~~dllr 114 (233)
++..++|.||||+|||++|..|+... | +.++++.+++.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~ 139 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA 139 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHH
Confidence 44579999999999999999987764 3 33445555544
No 251
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.83 E-value=0.0016 Score=60.13 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=37.1
Q ss_pred cCCccCCCCcccccccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 36 AEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 36 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
...+|.|+.+ ...|+|++.+...+.+... | .++..++|.||||+|||++++.+.+.+
T Consensus 23 l~~~~~P~~l---~~Re~e~~~l~~~l~~~~~----~---~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 23 LEPDYVPENL---PHREEQIEELAFALRPALR----G---SRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCCcCCCC---CCHHHHHHHHHHHHHHHhC----C---CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3345555542 2346677777664422211 2 234468899999999999999998876
No 252
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.82 E-value=0.0012 Score=71.94 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVR 114 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dllr 114 (233)
-|+|+||||+|||.+|+.||...++|+|++ .+++.
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 588999999999999999999999997654 46664
No 253
>PRK13695 putative NTPase; Provisional
Probab=96.82 E-value=0.0012 Score=54.50 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
|+|+|.|+||+||||+++.|+..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999987765
No 254
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.78 E-value=0.0046 Score=62.74 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
..-++|.|++|+||||+++.|++.+++.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3456899999999999999999999864
No 255
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.78 E-value=0.0013 Score=51.47 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+..+|+|+|+|||||||+...|...
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999998754
No 256
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.001 Score=66.57 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=32.7
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCE--Eecchh
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSI 112 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~--Is~~dl 112 (233)
+..+|++++|.||||+|||.+|+-||+.+|-.+ +|+|-+
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 456889999999999999999999999997654 566543
No 257
>CHL00176 ftsH cell division protein; Validated
Probab=96.77 E-value=0.0017 Score=64.80 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
+.-++|.||||+|||++|+.||...+++++.+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 34589999999999999999999999998865
No 258
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.76 E-value=0.0013 Score=53.15 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|++||||||+.+.|...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Confidence 34689999999999999999999875
No 259
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.046 Score=52.15 Aligned_cols=123 Identities=19% Similarity=0.201 Sum_probs=70.1
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh---CC-CEEecchhHhhcCCCCChHHHHHHHH--------HhcC-CccchHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL---EV-PRISMSSIVRQDLSPRSSLHKQIANA--------VNRG-EVVSEDI 141 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~---gl-~~Is~~dllr~~i~~~s~lg~~i~~~--------l~~G-~~vpdei 141 (233)
+.+|..|++.|--||||||-|-.||..| |. +.+...|+.|-.. .++++.. +..+ +.=|.++
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA------~eQL~~La~q~~v~~f~~~~~~~Pv~I 170 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAA------IEQLKQLAEQVGVPFFGSGTEKDPVEI 170 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHH------HHHHHHHHHHcCCceecCCCCCCHHHH
Confidence 4567899999999999999999999887 33 3444457776431 1233322 1122 2224444
Q ss_pred HHHHHHHHHHccCCCCeEEEEec------chHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCC--CCHHHHHHHHHHHHh
Q 026804 142 IFGLLSKRLEDGYYRDNFIVTNR------GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVG--SAPVETWQGLLTALH 213 (233)
Q Consensus 142 ~~~li~~rL~~~~~~~GfILVD~------~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~--~~~~eV~~~I~~~L~ 213 (233)
..+-++..-.. ...+||||+ ++.+..-+..-++.+. ....+.+||+. ++...+.+.+...|.
T Consensus 171 ak~al~~ak~~---~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~-------P~E~llVvDam~GQdA~~~A~aF~e~l~ 240 (451)
T COG0541 171 AKAALEKAKEE---GYDVVIVDTAGRLHIDEELMDELKEIKEVIN-------PDETLLVVDAMIGQDAVNTAKAFNEALG 240 (451)
T ss_pred HHHHHHHHHHc---CCCEEEEeCCCcccccHHHHHHHHHHHhhcC-------CCeEEEEEecccchHHHHHHHHHhhhcC
Confidence 44443322221 235788876 3444443433333333 33368899984 666667777666664
No 260
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.76 E-value=0.00094 Score=53.77 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
.++|.|+||+||||+++.||+.+|..+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 37899999999999999999999987654
No 261
>PRK09087 hypothetical protein; Validated
Probab=96.75 E-value=0.0012 Score=57.47 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecch
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~d 111 (233)
..++|.|++|||||++++.+++..+..+|+..+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~ 77 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNE 77 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHH
Confidence 358999999999999999999999988888743
No 262
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.0017 Score=58.87 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCE-EecchhH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPR-ISMSSIV 113 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~-Is~~dll 113 (233)
.++|.||||-||||+|..+|..+|... +..+-.+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l 88 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL 88 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc
Confidence 689999999999999999999999864 3334444
No 263
>PRK08116 hypothetical protein; Validated
Probab=96.75 E-value=0.012 Score=52.42 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CC--CEEecchhHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVR 114 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~---gl--~~Is~~dllr 114 (233)
.-++|.|+||+|||.+|..+++.+ +. .+++..+++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~ 155 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN 155 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 358899999999999999999875 43 3556666554
No 264
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.73 E-value=0.0015 Score=55.98 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecchh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSI 112 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~dl 112 (233)
-.++|.|+||+|||++++.++... .+.+++..++
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 368899999999999999999876 5556666554
No 265
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.70 E-value=0.002 Score=54.42 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=31.4
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHHh---C--CCEEecch
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSS 111 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~~---g--l~~Is~~d 111 (233)
|.+..++-.+.|.|+||||||++|..++... | +.+|++.+
T Consensus 6 ~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 6 GGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4455678899999999999999999988653 3 56777754
No 266
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0013 Score=66.36 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=30.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecc--hhHhh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQ 115 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~--dllr~ 115 (233)
=++|.||||+|||-+|+.+|..=|+|++++. +++..
T Consensus 346 GvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 346 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred ceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 4789999999999999999999999999874 44443
No 267
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.69 E-value=0.0018 Score=63.99 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-CCCEEecchh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSI 112 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~-gl~~Is~~dl 112 (233)
+.+.|.|.||+||||||+++.|+..+ +...|++++.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 46789999999999999999999987 4457777764
No 268
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.69 E-value=0.0016 Score=56.71 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
-.++|.|+||+||||+++.+++.+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3688999999999999999999876
No 269
>PRK06620 hypothetical protein; Validated
Probab=96.69 E-value=0.0014 Score=56.62 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=25.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
.++|.||||||||++++.+++..+..+++
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 57899999999999999999988765544
No 270
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0019 Score=61.96 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc--hhHhh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQ 115 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~--dllr~ 115 (233)
..++|.||||+|||.+|+.+|..++.+++++. +++-+
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 37899999999999999999998888877653 44433
No 271
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.67 E-value=0.0015 Score=51.41 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++|.|+||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998876
No 272
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.67 E-value=0.0018 Score=58.95 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
-.++|.|+||+|||++++.+|+.++.+++.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 478899999999999999999999977654
No 273
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.67 E-value=0.0015 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+|+|+|+.||||||+++.|...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 48999999999999999999764
No 274
>PRK12377 putative replication protein; Provisional
Probab=96.67 E-value=0.0018 Score=57.35 Aligned_cols=36 Identities=17% Similarity=0.344 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CC--CEEecchhHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVR 114 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~---gl--~~Is~~dllr 114 (233)
..++|.|+||+|||++|..|+..+ |. .++++.+++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 368999999999999999999887 33 4566666654
No 275
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.0017 Score=62.63 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
.-++|.||||+||||+|+.|++.++..
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 458999999999999999999999864
No 276
>PRK08181 transposase; Validated
Probab=96.65 E-value=0.0026 Score=57.03 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---C--CCEEecchhHhh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIVRQ 115 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~---g--l~~Is~~dllr~ 115 (233)
++..++|.||||+|||.+|..|+... | +.++++.+++.+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 44579999999999999999998643 3 556777777654
No 277
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.65 E-value=0.0018 Score=63.37 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
-++|.||||+||||+|+.|++.++.
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999875
No 278
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.65 E-value=0.0022 Score=61.04 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=31.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecchhH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV 113 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~dll 113 (233)
.+++.|.|.|++||||||+++.|...+. ...|+++|..
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4678999999999999999999987662 4567887755
No 279
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.65 E-value=0.0021 Score=64.87 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc--hhHhh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQ 115 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~--dllr~ 115 (233)
.-++|.||||||||++|+.||...+.+++++. +++..
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 34889999999999999999999998887653 55544
No 280
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.65 E-value=0.00092 Score=57.27 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=37.6
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHH------hCCCEEecchhHhhcCCCCChHHHHHHHHHhcCC
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL------LEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE 135 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~------~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~ 135 (233)
.+-.++-.++|.|+||+|||++|..++.. -++.++++.+-.++.+.+-..+|-.+.++.++|.
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~ 82 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGK 82 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCC
Confidence 33447779999999999999999886533 2345777654333222211234445666666664
No 281
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.64 E-value=0.002 Score=64.37 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
+.-++|.||||+||||+|+.||+.+++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3467899999999999999999999863
No 282
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.64 E-value=0.0017 Score=58.12 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=27.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCCEEecchhH
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIV 113 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~---gl~~Is~~dll 113 (233)
|.|.|++||||||+++.|++.+ +...|+++++.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 6789999999999999999887 45577877654
No 283
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.63 E-value=0.0023 Score=60.03 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
-++|.||||+||+|+|..+|+.+++.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 48899999999999999999999763
No 284
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0022 Score=59.54 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=29.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
|.+|+++||.|+|||.+|++||+--|.|+|.+
T Consensus 50 PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 50 PKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred ccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 56899999999999999999999999999974
No 285
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.62 E-value=0.0023 Score=62.31 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEE
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~I 107 (233)
..++|.|||||||||..+.||+.+|+.++
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 37788999999999999999999987554
No 286
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.0023 Score=62.23 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
+.-++|.||||+||||+|+.|++.+++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3457899999999999999999999763
No 287
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.61 E-value=0.0024 Score=64.81 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=28.3
Q ss_pred cCCce-EEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 75 RRRGV-HWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 75 ~~~~~-~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
+.|+. .++|.||||+|||++|+.||+.++.+++.
T Consensus 484 ~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~ 518 (758)
T PRK11034 484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_pred CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEE
Confidence 34544 58899999999999999999999877653
No 288
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.60 E-value=0.0016 Score=56.72 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~ 110 (233)
.++-.++|.|+||+||||+|..++-.. +..+++..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 355689999999999999986544332 33456654
No 289
>PRK09183 transposase/IS protein; Provisional
Probab=96.60 E-value=0.0021 Score=57.05 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---C--CCEEecchhH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIV 113 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~---g--l~~Is~~dll 113 (233)
++-.++|+||||+|||+++..|+... | +.+++..+++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 45678999999999999999997653 3 3345544544
No 290
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.60 E-value=0.014 Score=51.98 Aligned_cols=26 Identities=19% Similarity=0.162 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
....++|.||||+||||-...||..+
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 45589999999999999999999876
No 291
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.0022 Score=65.95 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
.-++|.||||+||||+|+.|++.+++.
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 346899999999999999999999764
No 292
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.59 E-value=0.0024 Score=57.38 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.++|.||||+||||+|+.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999999873
No 293
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.57 E-value=0.0026 Score=61.86 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
..++|.||||+|||++|+.+++.++.+
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhhccc
Confidence 458999999999999999999998654
No 294
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.56 E-value=0.055 Score=48.79 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=30.8
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHHh-----------CCCEEecch
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----------EVPRISMSS 111 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~~-----------gl~~Is~~d 111 (233)
|.+-.++..+.|.|+||||||++|-.++-.. .+.+|++.+
T Consensus 89 ~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 89 GGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 4444567889999999999999999998653 345677654
No 295
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.56 E-value=0.027 Score=53.77 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=27.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-------CCCEEecchhHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL-------EVPRISMSSIVR 114 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~-------gl~~Is~~dllr 114 (233)
-++|.||||+|||++++.++..+ .+.+++..+++.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~ 173 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence 48999999999999999998874 234666655543
No 296
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.55 E-value=0.0025 Score=54.36 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+++|.|+|++||||||+.+.|.+.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998875
No 297
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.55 E-value=0.015 Score=56.13 Aligned_cols=116 Identities=12% Similarity=0.137 Sum_probs=59.4
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecchhHhhcCCCCChHHHHHHHHHhcCCcc-----ch----
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV-----SE---- 139 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~v-----pd---- 139 (233)
+-.++-.++|.|+||+|||+++..++... ++.+|++.+-..+.+..-..+|-.+.+++.+|... |.
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 44467788999999999999998886543 45567664332222111112333345555555431 11
Q ss_pred HHHHHHHHHHHHccCCCCeEEEEecchHHHHHH--HHHHHhccHHHHHHHhcCc
Q 026804 140 DIIFGLLSKRLEDGYYRDNFIVTNRGGSLKEKL--EAYAELSKPLEDYYQKQKK 191 (233)
Q Consensus 140 ei~~~li~~rL~~~~~~~GfILVD~~e~i~~RL--~~y~~~~~~l~~~Y~~~~~ 191 (233)
+.....+.+.+.+. +...|+||+-..+.... ..+.+....+..+.++.+.
T Consensus 349 ~~~~~~i~~~i~~~--~~~~vVIDslt~l~~~~~~~~~~~~l~~l~~~~k~~~~ 400 (509)
T PRK09302 349 EDHLIIIKREIEEF--KPSRVAIDPLSALARGGSLNEFRQFVIRLTDYLKSEEI 400 (509)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEcCHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 11222344445442 23466677765553221 1223333334445455554
No 298
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.55 E-value=0.0029 Score=54.16 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=25.2
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
|....++..+.|.|+||||||++|..++-.
T Consensus 13 ~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 13 GGGIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345567889999999999999999999744
No 299
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.0031 Score=55.87 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---CC--CEEecchhHhh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVRQ 115 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~---gl--~~Is~~dllr~ 115 (233)
++..++|.|+||+|||.+|..|+.++ |+ .++++.|++++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~ 147 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK 147 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 66789999999999999999988775 43 46777787764
No 300
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.53 E-value=0.002 Score=51.03 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|+||+||||+..++...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999765
No 301
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.53 E-value=0.0024 Score=59.35 Aligned_cols=50 Identities=26% Similarity=0.333 Sum_probs=36.4
Q ss_pred cccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 49 YQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 49 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
|--|+...++..-+.+.+. |... +..+++|+||+|+||||+++.|.+.+.
T Consensus 64 ~G~~~~i~~lV~~fk~AA~----g~~~-~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 64 YGMEETIERLVNYFKSAAQ----GLEE-RKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred cCcHHHHHHHHHHHHHHHh----ccCc-cceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456667777665555544 4443 456788999999999999999988774
No 302
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.52 E-value=0.0018 Score=56.38 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=27.7
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHH---hC--CCEEecch
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL---LE--VPRISMSS 111 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~---~g--l~~Is~~d 111 (233)
+-.++-.++|.|+||||||++|..++.. -| ..++++.+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 3347789999999999999999876543 24 34666544
No 303
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.0029 Score=61.75 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
.-++|.||||+||||+|+.+++.+++.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 457899999999999999999999763
No 304
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.52 E-value=0.0024 Score=48.76 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~ 100 (233)
+|+|+|+||+||||+...|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999985
No 305
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.51 E-value=0.0025 Score=50.22 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+|+|+|+||+||||+..++...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999764
No 306
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.51 E-value=0.0024 Score=50.95 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+|+|+|+|||||||+.+++...
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999998753
No 307
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.50 E-value=0.0035 Score=57.08 Aligned_cols=32 Identities=16% Similarity=0.015 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecch
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~d 111 (233)
..|+|+||.|||||.+|-.||++ +...||.|.
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS 36 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKG-KAEIINVDS 36 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHh-CCcEEeccH
Confidence 47899999999999999999999 558888764
No 308
>PRK06893 DNA replication initiation factor; Validated
Probab=96.49 E-value=0.0025 Score=55.23 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~ 110 (233)
..++|.||||+|||++++.++..+ +..++++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 368899999999999999999875 55566653
No 309
>PHA03132 thymidine kinase; Provisional
Probab=96.49 E-value=0.005 Score=60.68 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G 134 (233)
+++.|+|.|.-||||||+++.|++.+|..++.+.+=.....+-.+..++.+.+.+.++
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~ 313 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPG 313 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcc
Confidence 3789999999999999999999999866555443211000000134566777766554
No 310
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.49 E-value=0.021 Score=54.71 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~ 102 (233)
-++|.|+||+|||++++.++..+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999875
No 311
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.48 E-value=0.0034 Score=63.43 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=30.0
Q ss_pred cCCce-EEEEEcCCCCCHHHHHHHHHHHhCCCE--Eecchh
Q 026804 75 RRRGV-HWAFIGSPRAKKHVYAEMLSKLLEVPR--ISMSSI 112 (233)
Q Consensus 75 ~~~~~-~IvliGpPGSGKsTlA~~La~~~gl~~--Is~~dl 112 (233)
|.++. .++|+||||+|||++|+.||+.++.++ +++++.
T Consensus 480 ~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 480 PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 45554 578999999999999999999998754 455454
No 312
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.48 E-value=0.0026 Score=49.72 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
|++|+++|+||+||||+...|...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 568999999999999999998754
No 313
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.45 E-value=0.0026 Score=50.43 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|+|||||||+.+++...
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999754
No 314
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.44 E-value=0.0032 Score=63.48 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
+..|+|.||||+|||++++.|+..++.+++.+
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 34688999999999999999999998877654
No 315
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.43 E-value=0.0026 Score=55.44 Aligned_cols=33 Identities=9% Similarity=-0.033 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecch
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSS 111 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~d 111 (233)
..++|.||||+|||++++.++.... +.+++.++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3789999999999999999988754 45666544
No 316
>PRK06921 hypothetical protein; Provisional
Probab=96.42 E-value=0.0043 Score=55.35 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+..++|.|+||+|||+++..++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4578999999999999999998865
No 317
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.42 E-value=0.0017 Score=62.45 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=28.4
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHH----HhC--CCEEecc
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSK----LLE--VPRISMS 110 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~----~~g--l~~Is~~ 110 (233)
|.+-.++-.++|.|+|||||||+|..++- +.| ..+|+..
T Consensus 15 ~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 15 HGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 34445778999999999999999998733 233 3466654
No 318
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.41 E-value=0.0041 Score=52.87 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=29.9
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecch
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS 111 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~d 111 (233)
.+-.++..+.|.|+|||||||+|..++... ++.+|+...
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 344577889999999999999999998765 234676543
No 319
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.41 E-value=0.003 Score=61.44 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
+.-++|.||||+||||+|+.+++.+++.
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3468999999999999999999999864
No 320
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.41 E-value=0.0032 Score=49.95 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+|+|+|.|||||||+..++...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999998753
No 321
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.41 E-value=0.0015 Score=57.34 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=28.4
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHh---C--CCEEecch
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSS 111 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~---g--l~~Is~~d 111 (233)
+-.++-.++|.|+||||||+++.+.+... | +.+|++.+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 33467789999999999999999876553 3 44666653
No 322
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.41 E-value=0.0029 Score=54.72 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..++|+||||+|||++|++|..-+
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCeEEECCCCCCHHHHHHHHHHhC
Confidence 489999999999999999999764
No 323
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.40 E-value=0.0034 Score=57.91 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++.+|-|+|+|||||||++..|...+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999987776
No 324
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.012 Score=59.11 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=35.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc--hhHhhcCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDLS 118 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~--dllr~~i~ 118 (233)
+.-|++.||||||||.+|..++..+++.+||+. +|+-+.|-
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 346899999999999999999999999999985 67776654
No 325
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.40 E-value=0.0034 Score=62.70 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
-++|.|+||+||||+|+.+++.+++.
T Consensus 40 AyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 40 AYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 47899999999999999999999773
No 326
>PRK14974 cell division protein FtsY; Provisional
Probab=96.39 E-value=0.0034 Score=58.01 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=28.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh---CC-CEEecchhHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EV-PRISMSSIVR 114 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~---gl-~~Is~~dllr 114 (233)
.++..|+|+|+||+||||.+..|+..+ |. +.+...|.+|
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 356789999999999999888888765 33 2344456554
No 327
>PRK10646 ADP-binding protein; Provisional
Probab=96.39 E-value=0.0043 Score=51.22 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=34.3
Q ss_pred ccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 52 ESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 52 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
+++-.++++.++... ..+..|+|.|.-|+||||+++-|++.+|+.
T Consensus 11 ~~~t~~l~~~la~~l---------~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 11 EQATLDLGARVAKAC---------DGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred HHHHHHHHHHHHHhC---------CCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 455666766554332 234589999999999999999999999873
No 328
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.38 E-value=0.0029 Score=50.69 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|+|||||||+..++...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998654
No 329
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.38 E-value=0.0043 Score=61.90 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=27.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
++|.||||+|||++++.++...+++++.++
T Consensus 188 ill~G~~G~GKt~~~~~~a~~~~~~f~~is 217 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 217 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 899999999999999999999999987653
No 330
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.37 E-value=0.019 Score=54.56 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----C--CCEEecchhH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL-----E--VPRISMSSIV 113 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~-----g--l~~Is~~dll 113 (233)
-++|.||||+|||++++.++..+ + +.+++..++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 47899999999999999999886 2 3355655543
No 331
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.37 E-value=0.0029 Score=50.36 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~ 100 (233)
++|+|+|+||+||||+..+|..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999864
No 332
>PLN03025 replication factor C subunit; Provisional
Probab=96.37 E-value=0.0035 Score=56.92 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++|.||||+||||+|+.+++.+
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987
No 333
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.0033 Score=61.06 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
+..|+|.||||+||||+|+.+++.+++
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 345799999999999999999999864
No 334
>PF13479 AAA_24: AAA domain
Probab=96.36 E-value=0.003 Score=54.21 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
++.+++|.|+||+||||+|..+ =+.-+|+++
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E 32 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDTE 32 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC---CCeEEEEeC
Confidence 6789999999999999999988 233456653
No 335
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.0049 Score=60.55 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=32.2
Q ss_pred ccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 62 LRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
-+.+||.+-.-.....|+++.++||||+||||+.+-|..+|-
T Consensus 53 klhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 53 KLHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred ccccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHH
Confidence 356888655444334567777999999999999999999873
No 336
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.34 E-value=0.0033 Score=50.23 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|+|||||||+.++|...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998765
No 337
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.33 E-value=0.0038 Score=47.97 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|+|+|.+||||||+...|....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999997765
No 338
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.017 Score=54.97 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEE
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~I 107 (233)
.+|++.||||.|||.+|+.||.+-|+.+-
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA 413 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYA 413 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCcee
Confidence 37999999999999999999999988764
No 339
>PRK04328 hypothetical protein; Provisional
Probab=96.33 E-value=0.0021 Score=56.55 Aligned_cols=39 Identities=10% Similarity=0.085 Sum_probs=28.1
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHH-h--C--CCEEecch
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL-L--E--VPRISMSS 111 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~-~--g--l~~Is~~d 111 (233)
.+-.++-.++|.|+||+|||++|..++.. . | ..+|++.+
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 33446779999999999999999986544 2 3 34666643
No 340
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.33 E-value=0.0037 Score=52.32 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
++..++|+|++||||||+.+.|...+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 355899999999999999999988763
No 341
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.33 E-value=0.0033 Score=48.82 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+++|+|||||||+...|...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999998544
No 342
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.33 E-value=0.0034 Score=49.63 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~ 100 (233)
++|+++|+|||||||+..++..
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999999864
No 343
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.31 E-value=0.002 Score=57.04 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~ 102 (233)
-+|+|||||||||.|.-..+-+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHH
Confidence 4789999999999998777665
No 344
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.31 E-value=0.0038 Score=52.92 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.|+|.||+||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999998887774
No 345
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.29 E-value=0.0037 Score=52.60 Aligned_cols=27 Identities=15% Similarity=-0.108 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
++..+.|+|++||||||+++.|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 455789999999999999999998774
No 346
>PRK04296 thymidine kinase; Provisional
Probab=96.27 E-value=0.0041 Score=52.46 Aligned_cols=25 Identities=8% Similarity=-0.193 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+..+++.|+||+||||.+..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999998887
No 347
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.27 E-value=0.0021 Score=60.20 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC--CCEEe--cchhHhhcC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRIS--MSSIVRQDL 117 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g--l~~Is--~~dllr~~i 117 (233)
.|.-|+|.||||+|||.+|-.+|+.+| +|++. -++++..++
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~ 93 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEV 93 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeeccc
Confidence 366889999999999999999999997 66654 446654444
No 348
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.27 E-value=0.007 Score=57.69 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++..|.|+|++||||||.+..||..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999776
No 349
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.26 E-value=0.0048 Score=62.39 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=29.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dl 112 (233)
...++|.||||+||||+|+.+++..+..++.++..
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 34678999999999999999999998777665543
No 350
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.26 E-value=0.0034 Score=60.19 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~g 103 (233)
=|+|-||||+||||+|+.||+-|.
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHH
Confidence 378999999999999999999983
No 351
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.26 E-value=0.0046 Score=49.10 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.++|+++|+||+||||+..++...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhC
Confidence 468999999999999999988764
No 352
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.26 E-value=0.0055 Score=57.27 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=32.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC--CCEE--ecchhHhhcC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRI--SMSSIVRQDL 117 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g--l~~I--s~~dllr~~i 117 (233)
.-|.-|+|.||||+|||.+|--+|+.+| .|++ +-++++..++
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~ 108 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEV 108 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecc
Confidence 3456789999999999999999999996 4554 4445554443
No 353
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.26 E-value=0.0055 Score=58.41 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=31.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH--h--CCCEEecchhHhhc
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL--L--EVPRISMSSIVRQD 116 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~--~--gl~~Is~~dllr~~ 116 (233)
++.+++++||||+|||.++..|+.. + | -.+++.+|+.+.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L 250 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNI 250 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHH
Confidence 5678999999999999999998777 2 4 566777777653
No 354
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.25 E-value=0.003 Score=53.70 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~ 102 (233)
|+|.|+|||||||..+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5899999999999999999884
No 355
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.25 E-value=0.0043 Score=53.24 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=27.7
Q ss_pred CCc-eEEEEEcCCCCCHHHHHHHHHHHh----CCCEEecchhHh
Q 026804 76 RRG-VHWAFIGSPRAKKHVYAEMLSKLL----EVPRISMSSIVR 114 (233)
Q Consensus 76 ~~~-~~IvliGpPGSGKsTlA~~La~~~----gl~~Is~~dllr 114 (233)
.++ ++|-|.||||||||++-.++.+.+ .+-.| .+|++.
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI-~~Di~t 52 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVI-TGDIYT 52 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEE-eceeec
Confidence 344 789999999999999988877666 44334 456554
No 356
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.0043 Score=58.15 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.1
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..++-.++|+||+|+||||.+.+|+.++
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456788999999999999999998764
No 357
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.24 E-value=0.0042 Score=50.15 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|.|||||||+.+++.+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998754
No 358
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.24 E-value=0.0052 Score=55.13 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEE
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~I 107 (233)
..+++.||||+||||+++.+++.++..++
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 35556899999999999999999875443
No 359
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.23 E-value=0.0036 Score=49.18 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~ 101 (233)
+|+|+|+|||||||+...|...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998643
No 360
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.23 E-value=0.0098 Score=56.88 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=30.4
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHHh---C--CCEEecchh
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSI 112 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~~---g--l~~Is~~dl 112 (233)
|.+-.++-.++|.|+||+||||++..++... + +.+++..+-
T Consensus 74 gGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 74 GGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES 119 (446)
T ss_pred cCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc
Confidence 3444466789999999999999999998765 2 356665443
No 361
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.21 E-value=0.0041 Score=52.02 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=28.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC-CCEEecchh
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLE-VPRISMSSI 112 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~g-l~~Is~~dl 112 (233)
|+=++.+||||||+|..|++-+| +-||--+++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 44589999999999999999999 999977665
No 362
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.21 E-value=0.0063 Score=48.45 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
.+..|+|.|+-||||||+++.|++.+|+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 55789999999999999999999999874
No 363
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.21 E-value=0.0038 Score=48.78 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
++-++.|+|++||||||+.+.|+..+.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 556899999999999999999987763
No 364
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.21 E-value=0.051 Score=55.88 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
.-++|.||+|+||||+|+.|++.+++
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 35789999999999999999999976
No 365
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.20 E-value=0.0053 Score=56.53 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecchhHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIVR 114 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~dllr 114 (233)
..++|.|+||+|||+++..++..+ .+.+++..+++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~ 224 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE 224 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence 569999999999999999999876 345666666654
No 366
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.19 E-value=0.0063 Score=53.79 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+++++|+|++||||||+...|-..+
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999988876654
No 367
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.19 E-value=0.005 Score=61.86 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
+.-++|.||||+||||+|+.|++.+++.
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3468999999999999999999998764
No 368
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.19 E-value=0.0048 Score=49.80 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+|+|+|+||+|||++..++...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 468999999999999999999754
No 369
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.18 E-value=0.0053 Score=54.24 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CC--CEEecchhHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVR 114 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~---gl--~~Is~~dllr 114 (233)
-++|.|+||+|||+++..|+..+ |. .++++.+++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 68899999999999999999987 33 3556666553
No 370
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.18 E-value=0.0062 Score=61.19 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
...+|.||||.||||+|..+|++-|+..+.+
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 4678899999999999999999999987765
No 371
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.17 E-value=0.0043 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+++|+++|.||+||||+...|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 578999999999999999999765
No 372
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.16 E-value=0.0048 Score=50.22 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+|+|+|.||+||||+..++...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999854
No 373
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.15 E-value=0.0056 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.030 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLS 99 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La 99 (233)
++-.++|+||+||||||+++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45688999999999999999987
No 374
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.0062 Score=60.54 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
.-++|.||+|+||||+|+.|++.+++
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45789999999999999999999986
No 375
>PRK13768 GTPase; Provisional
Probab=96.15 E-value=0.0052 Score=54.26 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+.++|.|++||||||++..++..+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH
Confidence 578999999999999999988776
No 376
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.14 E-value=0.0057 Score=54.91 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++..|+|+||+||||||.+..|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56688999999999999999998765
No 377
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.0047 Score=52.26 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++ ++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 347 89999999999999999998654
No 378
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.12 E-value=0.0058 Score=62.86 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=31.1
Q ss_pred ccCCce-EEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecchhH
Q 026804 74 ERRRGV-HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSIV 113 (233)
Q Consensus 74 ~~~~~~-~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~dll 113 (233)
.|.||. .++|.||||+|||.+|+.|++.+ .+..+++++..
T Consensus 591 ~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~ 636 (852)
T TIGR03345 591 DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQ 636 (852)
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhh
Confidence 355666 57899999999999999999998 23466666554
No 379
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.12 E-value=0.006 Score=55.07 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++..|.|+|+|||||||++..|+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999988865
No 380
>PRK09169 hypothetical protein; Validated
Probab=96.11 E-value=0.0067 Score=66.83 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHH-hcCCccchHHHHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLE 151 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l-~~G~~vpdei~~~li~~rL~ 151 (233)
...|+|+|.+|+||||+++.|++++++++++++..+.+. .|+.|.+++ ..| .+.+...+.|.+-+.
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr 2176 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG--LSPEQAAARVRDALR 2176 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC--chHHHHHHHHHHHhc
Confidence 357999999999999999999999999999998877654 456677664 455 777777777777664
No 381
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.11 E-value=0.0055 Score=50.39 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
.+..+|+|+|++||||||+.++|..
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3567889999999999999999975
No 382
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.09 E-value=0.0055 Score=51.18 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=16.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..+|.||||+||||+...+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 67899999999997666665554
No 383
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.08 E-value=0.0064 Score=51.68 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
....|.|+|++||||||+.+.+.+.++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988754
No 384
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.08 E-value=0.0055 Score=48.65 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|++|||||++.++|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998765
No 385
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.08 E-value=0.006 Score=49.44 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
-++|+++|++|+|||++..++...
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~ 25 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAG 25 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999998653
No 386
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.08 E-value=0.0059 Score=48.98 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
+.++|+|+|++||||||+..++..
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh
Confidence 347899999999999999999853
No 387
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.07 E-value=0.0067 Score=55.02 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+...+-|+|+|||||||+.+.|.+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998876
No 388
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.07 E-value=0.0075 Score=50.57 Aligned_cols=93 Identities=13% Similarity=0.132 Sum_probs=50.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh--CCCEEecchhHhhcCCCCCh------HH----HHHHHHHhcCCccchHHHH--H
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSS------LH----KQIANAVNRGEVVSEDIIF--G 144 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~--gl~~Is~~dllr~~i~~~s~------lg----~~i~~~l~~G~~vpdei~~--~ 144 (233)
...++-||.||||||+-..+-..+ ++.+|+.+++.-+ +.+..+ -+ ..++.+++.|...+-|.+. +
T Consensus 3 ~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~-i~p~~p~~~~i~A~r~ai~~i~~~I~~~~~F~~ETtLS~~ 81 (187)
T COG4185 3 RLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ-ISPDNPTSAAIQAARVAIDRIARLIDLGRPFIAETTLSGP 81 (187)
T ss_pred eEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh-cCCCCchHHHHHHHHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 456788999999999877654443 5677887666544 333221 11 1234567777766544332 2
Q ss_pred HHHHHHHccCCCCeEEE------EecchHHHHHHH
Q 026804 145 LLSKRLEDGYYRDNFIV------TNRGGSLKEKLE 173 (233)
Q Consensus 145 li~~rL~~~~~~~GfIL------VD~~e~i~~RL~ 173 (233)
-+.+.++... ..||.+ +|++|...+|++
T Consensus 82 s~~~~ik~Ak-~~Gf~I~L~y~~i~~~elavERVk 115 (187)
T COG4185 82 SILELIKTAK-AAGFYIVLNYIVIDSVELAVERVK 115 (187)
T ss_pred hHHHHHHHHH-hCCeEEEEEEEEeCcHHHHHHHHH
Confidence 2233343322 356554 255544444443
No 389
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.06 E-value=0.0079 Score=61.58 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
-.++|+||||+|||++++.||++.
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999986
No 390
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.06 E-value=0.0061 Score=50.50 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.5
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.+..+|+|+|++||||||+..++...
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999999753
No 391
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.05 E-value=0.0056 Score=53.61 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.2
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
-.+|=.++|+||+||||||+-+.|..
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 35677899999999999999998853
No 392
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.05 E-value=0.0051 Score=58.99 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
+..|+|.||||+|||++|+.|++.++
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 44788999999999999999999884
No 393
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.05 E-value=0.0085 Score=51.25 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=29.9
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecc
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~ 110 (233)
.+..++..+.|.|+||+|||++|..++... ++.++++.
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 344578899999999999999999998643 35567765
No 394
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.05 E-value=0.0059 Score=48.04 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|++|+||||+..++...
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988754
No 395
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.04 E-value=0.008 Score=59.07 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCE
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~ 106 (233)
+.-++|.||+|+||||+|+.+++.+++..
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~~ 66 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCLN 66 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 34578899999999999999999987643
No 396
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.04 E-value=0.0086 Score=54.31 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=30.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEE---ecchhH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRI---SMSSIV 113 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~I---s~~dll 113 (233)
+...|++.|+=|||||++|+.||+++|+.|. .+++++
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iy 109 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIY 109 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCccccccccccee
Confidence 4568999999999999999999999998765 455544
No 397
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.03 E-value=0.007 Score=53.56 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=28.7
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecc
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~ 110 (233)
.+-.++-.++|.|+||+|||++|..++... .+.++++.
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 344477899999999999999999976643 34566653
No 398
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.0069 Score=60.57 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
+.-++|.|++|+||||+|+.|++.+++
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345789999999999999999999987
No 399
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.03 E-value=0.0061 Score=49.04 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~ 100 (233)
++|+|+|.||+||||+..++..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999998764
No 400
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.02 E-value=0.0055 Score=48.96 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+|+|+|++||||||+..+|...+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 47899999999999999997754
No 401
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.02 E-value=0.0092 Score=49.07 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
+.=++|.|++|+||||+|..|.++ |..+|+
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lva 43 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVA 43 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEE
Confidence 567899999999999999988876 666665
No 402
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.01 E-value=0.0061 Score=49.06 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|++||||||+..++...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~ 24 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADD 24 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998754
No 403
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=96.00 E-value=0.0065 Score=49.39 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+..+|+|+|++||||||+..+|...
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC
Confidence 4578999999999999999998755
No 404
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.029 Score=56.83 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc--hhHhhcC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDL 117 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~--dllr~~i 117 (233)
==|++-||||+|||-+||.+|-.+.+.++|+. +|+-..+
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYV 746 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYV 746 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHh
Confidence 34899999999999999999999999999985 6776554
No 405
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.00 E-value=0.007 Score=50.02 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+..+|+++|++||||||+..+|...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~ 37 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNG 37 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSS
T ss_pred CcEEEEEEECCCccchHHHHHHhhhc
Confidence 57789999999999999999999753
No 406
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.00 E-value=0.01 Score=42.41 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=25.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCCEEecc
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLL---EVPRISMS 110 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~---gl~~Is~~ 110 (233)
+++.|.+|+||||++..|+..+ |...+-++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 6789999999999999999987 66555554
No 407
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.00 E-value=0.0069 Score=56.29 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
+|+.|.|+|++||||||+++.|.+++.-
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~ 31 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSE 31 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 6889999999999999999999988863
No 408
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.98 E-value=0.0066 Score=51.29 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356689999999999999999999765
No 409
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.98 E-value=0.0068 Score=50.50 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999998755
No 410
>PRK10867 signal recognition particle protein; Provisional
Probab=95.98 E-value=0.0075 Score=57.58 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++..|+++|+|||||||.+..||..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346789999999999999888877654
No 411
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=95.97 E-value=0.14 Score=46.33 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
.|+|.|.+||||||-.+.| +.+|+-+|+
T Consensus 3 ~vIiTGlSGaGKs~Al~~l-ED~Gy~cvD 30 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRAL-EDLGYYCVD 30 (284)
T ss_pred EEEEeCCCcCCHHHHHHHH-HhcCeeEEc
Confidence 5789999999999977766 667877665
No 412
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.037 Score=54.31 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
|.=|++.||||.|||.+|+.+|-.-|+|+..+
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 44588999999999999999999999998865
No 413
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.96 E-value=0.0063 Score=53.07 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
+..++|.|+||+||||+|+.|+. +..+++.+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d 42 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFD 42 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--CCEEEecc
Confidence 56799999999999999999963 23455543
No 414
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.95 E-value=0.0069 Score=51.42 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999999765
No 415
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.95 E-value=0.0072 Score=51.11 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999999765
No 416
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.94 E-value=0.0071 Score=51.33 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 356689999999999999999998765
No 417
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.94 E-value=0.0058 Score=51.34 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++|+|+|++||||||+..++.+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 799999999999999999998775
No 418
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.94 E-value=0.0073 Score=48.40 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|+|||||||+..++...
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999753
No 419
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.0088 Score=59.51 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
.-++|.||||+||||+|+.||+.+++.
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 348899999999999999999999874
No 420
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0079 Score=57.44 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
=+|+++||.|||||-+|+.||+-+++|+.-.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIc 257 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAIC 257 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEe
Confidence 4799999999999999999999999998644
No 421
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=95.93 E-value=0.0069 Score=48.82 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|++|+||||+..++...
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~ 23 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAND 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988754
No 422
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.92 E-value=0.01 Score=53.82 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
+..++|.||||+||||+|+.+++.+..
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456889999999999999999999854
No 423
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.92 E-value=0.0061 Score=47.39 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q 026804 81 WAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~ 101 (233)
|+|+|++||||||+.++|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999765
No 424
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.92 E-value=0.0078 Score=50.00 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.|..+++|.|.||+||||+-..|+.+
T Consensus 7 nR~~~fIltGgpGaGKTtLL~aLa~~ 32 (183)
T COG3911 7 NRHKRFILTGGPGAGKTTLLAALARA 32 (183)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHc
Confidence 34457889999999999999999887
No 425
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.91 E-value=0.0087 Score=53.51 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+..+|=|.||||+||||+...|.+.|
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 356799999999999999999998887
No 426
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.91 E-value=0.0083 Score=57.19 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++..+++.|+|||||||.+..||..+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 456789999999999999998888764
No 427
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.91 E-value=0.0081 Score=54.72 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=29.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh---CC--CEEecchhHhh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL---EV--PRISMSSIVRQ 115 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~---gl--~~Is~~dllr~ 115 (233)
+.-++|.|+||+|||.++..|+..+ |. .++.+.+++++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 4568999999999999999999887 44 45666666643
No 428
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.91 E-value=0.0084 Score=48.42 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+|.|+|+.||||||+++.|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998776
No 429
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.90 E-value=0.0078 Score=50.83 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356689999999999999999998765
No 430
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.90 E-value=0.0079 Score=52.73 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
....|+|.|++|+||||+|..+++.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CeEEEEEEcCCcCCcceeeeecccc
Confidence 4568899999999999999999987
No 431
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.89 E-value=0.049 Score=52.59 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=27.3
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh----C--CCEEecch
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMSS 111 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~----g--l~~Is~~d 111 (233)
-.++-.++|.|+||+|||++|..++... | +.+|++.+
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 3467789999999999999999865432 4 34666654
No 432
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.89 E-value=0.0079 Score=50.44 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-++.|+|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 355689999999999999999998865
No 433
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.89 E-value=0.0077 Score=50.96 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999998764
No 434
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=95.88 E-value=0.0069 Score=48.40 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+|+|+|+|||||||+..++...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999754
No 435
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=95.87 E-value=0.0075 Score=48.64 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+|+|+|++|||||++..++.+.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999874
No 436
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.87 E-value=0.0081 Score=50.71 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999998754
No 437
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.87 E-value=0.0078 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~ 102 (233)
+.|+|++||||||++..|.+.+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998876
No 438
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=95.87 E-value=0.0078 Score=47.79 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|+|||||||+..+|...
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999998754
No 439
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.87 E-value=0.0082 Score=50.73 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999999754
No 440
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.86 E-value=0.008 Score=53.27 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
.+|-++.|+|++|+||||+++.+++....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46779999999999999999999987754
No 441
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.86 E-value=0.0093 Score=56.07 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=34.8
Q ss_pred HhhhccccccccccCcc--------------cCCceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 58 HRDSLRSVTLPDTEGRE--------------RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 58 ~~~~~~~~~~~~~~~~~--------------~~~~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
|++.++|+...|-+|.. ..+-.-+++-||||+||||+|+.|+..-.-.
T Consensus 128 LaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~ 189 (554)
T KOG2028|consen 128 LAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH 189 (554)
T ss_pred hhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC
Confidence 45556677767776653 1223458899999999999999998876544
No 442
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.86 E-value=0.0074 Score=51.85 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 456689999999999999999998654
No 443
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.85 E-value=0.05 Score=52.12 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=26.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-------CCCEEecchhHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL-------EVPRISMSSIVR 114 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~-------gl~~Is~~dllr 114 (233)
-++|.|++|+|||++++.++..+ .+.+++..++++
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~ 184 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR 184 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence 47899999999999999998843 234666656554
No 444
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.85 E-value=0.0083 Score=50.99 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.2
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
-.+|-.+.|+||.||||||+.+.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466789999999999999999998664
No 445
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.0082 Score=51.67 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456689999999999999999998654
No 446
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=95.84 E-value=0.075 Score=47.76 Aligned_cols=118 Identities=14% Similarity=0.187 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhc---CCccchHHHHHHHHHHHHccCCC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNR---GEVVSEDIIFGLLSKRLEDGYYR 156 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~---G~~vpdei~~~li~~rL~~~~~~ 156 (233)
=|+|+|.+-+|||-++-.||. +|+..-+.-=+ .+.++-+.+.+.-.+ |-.+..+.+.++=++|+.....
T Consensus 145 DIiLvGVSRtsKTPlS~YLA~-~G~KvAN~PLv------pe~~lP~~L~~~~~~kivGLtIdp~rL~~IR~~Rl~~lg~- 216 (269)
T PRK05339 145 DVILVGVSRTSKTPTSLYLAN-KGIKAANYPLV------PEVPLPEELFPIDPKKIFGLTIDPERLIEIRKERLPNLGL- 216 (269)
T ss_pred CEEEECcCCCCCcHHHHHHHc-cCCceEeeCCC------CCCCCCHHHHhCCCCcEEEEeCCHHHHHHHHHHHhcccCc-
Confidence 499999999999999999999 77765544211 112333344432221 4455666677777777765210
Q ss_pred CeEEEEecchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCC-CCHHHHHHHHHHHHhhcc
Q 026804 157 DNFIVTNRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVG-SAPVETWQGLLTALHLQH 216 (233)
Q Consensus 157 ~GfILVD~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~-~~~~eV~~~I~~~L~~~~ 216 (233)
..| .+.+.+ .++..-..+.|++.+ |-+||++ ++++|+...|.+.++.+.
T Consensus 217 s~Y---a~~~~i-------~~El~~A~~l~~k~~-~pvIdvT~kSIEEtA~~Il~~~~~~~ 266 (269)
T PRK05339 217 SRY---ASLEQC-------REELAEAERLFRREG-IPVIDVTNKSIEETAAKILEILGLRR 266 (269)
T ss_pred CcC---CCHHHH-------HHHHHHHHHHHHHcC-CCEEECCCCcHHHHHHHHHHHHHhhc
Confidence 000 112222 334555667788764 7899985 999999999999987643
No 447
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.0082 Score=51.67 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+||.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999999765
No 448
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=95.84 E-value=0.008 Score=48.79 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
-++|+|+|++||||||+..++...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~ 27 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDN 27 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999998753
No 449
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.83 E-value=0.01 Score=49.11 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
..+.|+|++||||||++++|...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999873
No 450
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.0076 Score=56.30 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=33.9
Q ss_pred ccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 52 ESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 52 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
|++++++...+.+... |. ++..++|.|+||+|||+.++.+.+++.
T Consensus 23 e~ei~~l~~~l~~~~~----~~---~p~n~~iyG~~GTGKT~~~~~v~~~l~ 67 (366)
T COG1474 23 EEEINQLASFLAPALR----GE---RPSNIIIYGPTGTGKTATVKFVMEELE 67 (366)
T ss_pred HHHHHHHHHHHHHHhc----CC---CCccEEEECCCCCCHhHHHHHHHHHHH
Confidence 5678888775544433 22 334599999999999999999999973
No 451
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.83 E-value=0.0084 Score=50.36 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356689999999999999999999765
No 452
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=95.83 E-value=0.012 Score=49.13 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i 117 (233)
+|.|.|..|||++++|+.||+++|+++++- +++.+..
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a 37 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAA 37 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHH
Confidence 478999999999999999999999999997 7886654
No 453
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.83 E-value=0.0094 Score=47.70 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+-.+++++|++||||||+.+.+...
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~ 30 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQG 30 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999743
No 454
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=95.82 E-value=0.006 Score=48.38 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~ 101 (233)
+|+|+|+||||||++..++...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 4889999999999999999765
No 455
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.82 E-value=0.0087 Score=50.89 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+||.||||||+.+.|+..+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356689999999999999999998765
No 456
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.81 E-value=0.011 Score=53.79 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=31.0
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHHh-----------CCCEEecch
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----------EVPRISMSS 111 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~~-----------gl~~Is~~d 111 (233)
|.+..++..+.|.|+||||||++|..++-.. ++.+|++.+
T Consensus 96 ~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 96 GGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 4444578889999999999999999998653 345777654
No 457
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.80 E-value=0.011 Score=58.25 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
+.-++|.||||+||||+|+.|++.+++
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345789999999999999999999875
No 458
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.80 E-value=0.0088 Score=50.82 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999999765
No 459
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=95.80 E-value=0.0082 Score=47.57 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~ 100 (233)
+|+|+|+|||||||+...|..
T Consensus 2 ki~liG~~~~GKSsli~~l~~ 22 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMY 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 789999999999999988743
No 460
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.79 E-value=0.01 Score=60.74 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=29.7
Q ss_pred ccCCce-EEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecchh
Q 026804 74 ERRRGV-HWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSI 112 (233)
Q Consensus 74 ~~~~~~-~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~dl 112 (233)
.|.|+. .++|.||||+|||++|+.||+.+ .+..+++++.
T Consensus 534 ~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~ 578 (821)
T CHL00095 534 NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEY 578 (821)
T ss_pred CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhc
Confidence 456665 47899999999999999999987 2345566554
No 461
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.0091 Score=50.55 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999998754
No 462
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.79 E-value=0.012 Score=48.43 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=33.7
Q ss_pred ccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 52 ESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 52 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
|++..++.+.+... ...+-.|++.|.=||||||+++-|++.+|+
T Consensus 8 ~~~t~~lg~~l~~~---------l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 8 EEATLALGERLAEA---------LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred HHHHHHHHHHHHhh---------CCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 44555666544322 235679999999999999999999999985
No 463
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.78 E-value=0.008 Score=58.25 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
.-++|.||||+||||+|+.+|+.+++
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcC
Confidence 46899999999999999999998865
No 464
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.78 E-value=0.0093 Score=49.04 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.9
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.+..+|+|+|.+|+||||+...|...
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 356789999999999999999999765
No 465
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.0096 Score=49.25 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999998654
No 466
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.77 E-value=0.01 Score=59.96 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.-.++|+||||+|||++++.|++++
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4478999999999999999999987
No 467
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.77 E-value=0.011 Score=58.48 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
.-++|.||||+||||+|+.+|+.+.+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35889999999999999999999865
No 468
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.77 E-value=0.0085 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~ 100 (233)
.+|+|+|++|||||++..+|..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999864
No 469
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.76 E-value=0.0091 Score=50.31 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+||.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998764
No 470
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.76 E-value=0.0093 Score=51.46 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456689999999999999999998654
No 471
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.76 E-value=0.0096 Score=53.96 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=32.8
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHHh---CC-C-EEecchhHhh
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL---EV-P-RISMSSIVRQ 115 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~~---gl-~-~Is~~dllr~ 115 (233)
++.+.+++.|+++|..||||||+.++|-.++ +. | .|+++--+++
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~ 61 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRN 61 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhc
Confidence 3456788999999999999999999998876 22 3 3555544443
No 472
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.75 E-value=0.01 Score=52.21 Aligned_cols=26 Identities=12% Similarity=0.044 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+..|+|.|++||||||+.+.|.+..
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cceEEEEECCCccccchHHHHHhhhc
Confidence 34689999999999999999999887
No 473
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.75 E-value=0.013 Score=53.26 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecchh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSSI 112 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~dl 112 (233)
..|+|.|++||||||+++.|.+.. +...+.+.|.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDT 171 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCc
Confidence 478899999999999999998876 2345555553
No 474
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.74 E-value=0.0095 Score=52.21 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.0
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
-.+|=.+.|+||.||||||+-..|+--
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 456778999999999999999988754
No 475
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.74 E-value=0.0097 Score=50.87 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356689999999999999999999876
No 476
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.74 E-value=0.0096 Score=51.12 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466789999999999999999999775
No 477
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.74 E-value=0.0093 Score=50.81 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466799999999999999999999765
No 478
>PTZ00369 Ras-like protein; Provisional
Probab=95.74 E-value=0.0099 Score=49.32 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..++|+|+|.+|+||||++.++...
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~ 28 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQN 28 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999998764
No 479
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=95.74 E-value=0.0095 Score=48.16 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+|+|+|.||+||||+..++...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999864
No 480
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.73 E-value=0.0097 Score=51.63 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466789999999999999999998764
No 481
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.73 E-value=0.0089 Score=50.62 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456689999999999999999998764
No 482
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.0097 Score=51.42 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356689999999999999999998765
No 483
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.73 E-value=0.01 Score=61.04 Aligned_cols=39 Identities=23% Similarity=0.483 Sum_probs=29.4
Q ss_pred cCCce-EEEEEcCCCCCHHHHHHHHHHHh---C--CCEEecchhH
Q 026804 75 RRRGV-HWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSSIV 113 (233)
Q Consensus 75 ~~~~~-~IvliGpPGSGKsTlA~~La~~~---g--l~~Is~~dll 113 (233)
|.++. .++|+||||+|||++|+.|++.+ + +..+++.++.
T Consensus 594 ~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 594 PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 45554 57899999999999999999886 2 3445665554
No 484
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.72 E-value=0.013 Score=58.22 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
+.-++|.||+|+||||+|+.|++.+++.
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 3458999999999999999999999764
No 485
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.72 E-value=0.0097 Score=50.99 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466799999999999999999999765
No 486
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=95.71 E-value=0.0097 Score=49.92 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..++|+|+|++|+||||+..++...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999998754
No 487
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.0097 Score=49.90 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.++-++.|+|++||||||+.+.|+..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35668999999999999999999864
No 488
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.0095 Score=50.77 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999998764
No 489
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.063 Score=54.66 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++-.|.|+||.|+||||.+.+|+..+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhH
Confidence 45688999999999999999999766
No 490
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.71 E-value=0.0088 Score=50.11 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|+||+||||+..++...
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~ 23 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHG 23 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998754
No 491
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.71 E-value=0.011 Score=48.96 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456689999999999999999998764
No 492
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.01 Score=50.55 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999999764
No 493
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.70 E-value=0.014 Score=55.80 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
.-++|.||||+||+|+|+.+++.+...
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 458899999999999999999998653
No 494
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.70 E-value=0.0097 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++.++|++||||||++..|+..+
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 36789999999999999999886
No 495
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.70 E-value=0.0099 Score=51.21 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+|-++.|+|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46678999999999999999999876
No 496
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.69 E-value=0.0089 Score=49.96 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
-++|+|+|+|||||||+.+.|...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 369999999999999999998875
No 497
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.69 E-value=0.0095 Score=55.14 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..|=.++|+||.||||||+-+.||--.
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345588999999999999999998544
No 498
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.69 E-value=0.01 Score=51.07 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 355689999999999999999999765
No 499
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.67 E-value=0.011 Score=46.95 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~ 101 (233)
+|+|+|++|||||++..++...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998764
No 500
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.67 E-value=0.011 Score=50.73 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356689999999999999999998754
Done!