Query 026804
Match_columns 233
No_of_seqs 176 out of 1462
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 22:35:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 2.2E-32 7.4E-37 235.1 16.8 143 75-217 26-216 (217)
2 3sr0_A Adenylate kinase; phosp 100.0 9.6E-32 3.3E-36 229.0 13.6 133 79-214 1-204 (206)
3 3gmt_A Adenylate kinase; ssgci 100.0 2.3E-28 7.9E-33 211.9 12.5 138 77-214 7-229 (230)
4 3tlx_A Adenylate kinase 2; str 99.9 2E-24 7E-29 186.5 17.0 138 76-213 27-242 (243)
5 3dl0_A Adenylate kinase; phosp 99.9 7.7E-23 2.6E-27 171.6 15.5 136 79-214 1-214 (216)
6 3fb4_A Adenylate kinase; psych 99.9 2.7E-22 9.4E-27 168.0 15.6 136 79-214 1-214 (216)
7 3be4_A Adenylate kinase; malar 99.9 4.1E-22 1.4E-26 168.4 14.2 137 76-212 3-217 (217)
8 1aky_A Adenylate kinase; ATP:A 99.9 1.1E-21 3.7E-26 165.5 15.4 138 76-213 2-218 (220)
9 1ak2_A Adenylate kinase isoenz 99.9 1.4E-21 4.8E-26 166.8 15.1 140 75-214 13-230 (233)
10 1e4v_A Adenylate kinase; trans 99.9 1.4E-21 4.7E-26 164.4 11.9 134 79-212 1-213 (214)
11 2xb4_A Adenylate kinase; ATP-b 99.8 2.7E-20 9.4E-25 158.1 15.4 133 79-212 1-222 (223)
12 1zd8_A GTP:AMP phosphotransfer 99.8 5.3E-20 1.8E-24 156.0 14.7 138 76-215 5-215 (227)
13 2cdn_A Adenylate kinase; phosp 99.8 2E-19 6.7E-24 149.4 14.6 137 75-213 17-200 (201)
14 2c95_A Adenylate kinase 1; tra 99.8 5.4E-19 1.8E-23 144.8 15.5 139 76-214 7-193 (196)
15 1tev_A UMP-CMP kinase; ploop, 99.8 1.4E-18 4.6E-23 141.7 16.8 138 77-214 2-194 (196)
16 3cm0_A Adenylate kinase; ATP-b 99.8 8.1E-19 2.8E-23 143.1 14.2 137 77-213 3-185 (186)
17 1zak_A Adenylate kinase; ATP:A 99.8 2.8E-19 9.5E-24 150.9 10.8 137 77-215 4-211 (222)
18 1ukz_A Uridylate kinase; trans 99.8 2.2E-18 7.5E-23 142.8 15.5 141 74-214 11-201 (203)
19 1qf9_A UMP/CMP kinase, protein 99.8 4.5E-18 1.5E-22 138.4 16.8 138 77-215 5-192 (194)
20 2bwj_A Adenylate kinase 5; pho 99.8 1.3E-18 4.6E-23 142.8 13.1 138 77-214 11-196 (199)
21 2bbw_A Adenylate kinase 4, AK4 99.7 2.3E-15 7.9E-20 128.9 16.5 138 77-215 26-235 (246)
22 2pbr_A DTMP kinase, thymidylat 99.4 2.7E-11 9.1E-16 98.3 15.5 130 79-214 1-191 (195)
23 3lw7_A Adenylate kinase relate 99.3 2E-11 6.8E-16 96.6 12.8 38 79-117 2-39 (179)
24 3vaa_A Shikimate kinase, SK; s 99.3 1.5E-11 5.1E-16 101.9 10.9 40 77-116 24-63 (199)
25 3t61_A Gluconokinase; PSI-biol 99.3 3.4E-11 1.2E-15 99.5 13.0 143 77-219 17-184 (202)
26 1zuh_A Shikimate kinase; alpha 99.3 3.3E-11 1.1E-15 96.7 12.1 127 79-212 8-167 (168)
27 4eaq_A DTMP kinase, thymidylat 99.3 3.2E-10 1.1E-14 96.8 17.8 134 75-214 23-224 (229)
28 2wwf_A Thymidilate kinase, put 99.3 1.2E-11 4.1E-16 102.2 8.1 138 76-215 8-200 (212)
29 3trf_A Shikimate kinase, SK; a 99.2 4.4E-11 1.5E-15 97.0 11.2 39 78-116 5-43 (185)
30 2iyv_A Shikimate kinase, SK; t 99.2 1.2E-11 4.2E-16 100.4 7.4 39 79-117 3-41 (184)
31 3kb2_A SPBC2 prophage-derived 99.2 2.1E-10 7.2E-15 91.2 14.1 136 79-216 2-168 (173)
32 2z0h_A DTMP kinase, thymidylat 99.2 2.3E-10 7.8E-15 93.2 14.2 54 79-138 1-57 (197)
33 2pt5_A Shikimate kinase, SK; a 99.2 4.7E-11 1.6E-15 95.3 9.8 38 79-116 1-38 (168)
34 2vli_A Antibiotic resistance p 99.2 1.2E-10 4E-15 94.1 11.0 140 75-215 2-172 (183)
35 1nn5_A Similar to deoxythymidy 99.2 1.1E-10 3.7E-15 96.4 10.9 33 77-109 8-40 (215)
36 3v9p_A DTMP kinase, thymidylat 99.2 1.4E-10 4.7E-15 99.8 11.4 59 76-140 23-88 (227)
37 4edh_A DTMP kinase, thymidylat 99.2 5.4E-10 1.8E-14 94.9 14.7 133 76-214 4-206 (213)
38 1e6c_A Shikimate kinase; phosp 99.2 7.1E-11 2.4E-15 94.5 8.5 38 79-116 3-40 (173)
39 1via_A Shikimate kinase; struc 99.2 8.8E-11 3E-15 94.9 9.1 129 79-215 5-167 (175)
40 3lv8_A DTMP kinase, thymidylat 99.2 1.6E-10 5.6E-15 99.8 11.0 57 74-132 23-79 (236)
41 1cke_A CK, MSSA, protein (cyti 99.2 3.3E-11 1.1E-15 100.7 6.1 38 78-115 5-42 (227)
42 2v54_A DTMP kinase, thymidylat 99.1 1.1E-09 3.9E-14 89.7 15.0 53 77-134 3-56 (204)
43 4hlc_A DTMP kinase, thymidylat 99.1 1.2E-09 4.1E-14 92.1 15.3 130 79-214 3-200 (205)
44 4tmk_A Protein (thymidylate ki 99.1 3.4E-10 1.2E-14 96.2 11.6 132 77-214 2-206 (213)
45 1jjv_A Dephospho-COA kinase; P 99.1 2.4E-09 8.2E-14 88.4 16.3 42 79-121 3-44 (206)
46 2if2_A Dephospho-COA kinase; a 99.1 1E-09 3.4E-14 90.4 13.0 43 79-122 2-44 (204)
47 3hjn_A DTMP kinase, thymidylat 99.1 2.1E-09 7E-14 90.0 14.2 131 79-215 1-192 (197)
48 1y63_A LMAJ004144AAA protein; 99.1 1E-09 3.5E-14 89.8 12.0 42 75-116 7-49 (184)
49 1vht_A Dephospho-COA kinase; s 99.1 1.7E-09 5.9E-14 90.2 13.2 52 77-129 3-54 (218)
50 2plr_A DTMP kinase, probable t 99.1 1.5E-09 5E-14 89.1 12.4 139 77-215 3-208 (213)
51 1nks_A Adenylate kinase; therm 99.1 8.1E-10 2.8E-14 89.2 10.5 38 79-116 2-44 (194)
52 2jaq_A Deoxyguanosine kinase; 99.1 2.1E-09 7.3E-14 87.6 13.1 30 79-108 1-30 (205)
53 2h92_A Cytidylate kinase; ross 99.1 1.8E-10 6.3E-15 95.9 6.6 39 77-115 2-40 (219)
54 3nwj_A ATSK2; P loop, shikimat 99.0 6.4E-10 2.2E-14 96.8 9.4 133 78-215 48-237 (250)
55 1uf9_A TT1252 protein; P-loop, 99.0 1.4E-09 4.8E-14 88.9 11.0 46 71-117 1-46 (203)
56 1kht_A Adenylate kinase; phosp 99.0 5.3E-10 1.8E-14 90.3 8.3 40 77-116 2-46 (192)
57 3a4m_A L-seryl-tRNA(SEC) kinas 99.0 1.5E-09 5.1E-14 93.9 11.1 139 77-217 3-176 (260)
58 2f6r_A COA synthase, bifunctio 99.0 2.9E-09 9.8E-14 93.5 12.4 53 74-127 71-123 (281)
59 4eun_A Thermoresistant glucoki 99.0 2E-09 7E-14 89.0 10.4 140 77-216 28-195 (200)
60 1ly1_A Polynucleotide kinase; 99.0 2.8E-10 9.5E-15 91.1 4.6 37 79-116 3-40 (181)
61 1kag_A SKI, shikimate kinase I 99.0 1.6E-09 5.5E-14 86.7 8.8 39 78-116 4-42 (173)
62 2rhm_A Putative kinase; P-loop 99.0 3.9E-09 1.3E-13 85.6 10.7 38 76-113 3-40 (193)
63 3tmk_A Thymidylate kinase; pho 99.0 2.3E-09 7.9E-14 91.4 9.4 54 77-135 4-57 (216)
64 3fdi_A Uncharacterized protein 98.9 4.7E-09 1.6E-13 88.0 10.9 39 77-116 5-43 (201)
65 1m7g_A Adenylylsulfate kinase; 98.9 2.1E-09 7.2E-14 89.6 8.6 142 76-218 23-206 (211)
66 1knq_A Gluconate kinase; ALFA/ 98.9 1.2E-08 4.1E-13 81.9 12.2 137 76-214 6-173 (175)
67 1qhx_A CPT, protein (chloramph 98.9 1.1E-09 3.6E-14 88.1 5.6 131 78-212 3-176 (178)
68 2grj_A Dephospho-COA kinase; T 98.9 5.4E-09 1.8E-13 87.3 10.0 41 77-117 11-51 (192)
69 3ake_A Cytidylate kinase; CMP 98.9 3E-08 1E-12 81.2 14.1 37 80-116 4-40 (208)
70 3iij_A Coilin-interacting nucl 98.9 2.1E-09 7.1E-14 87.0 6.5 41 76-116 9-49 (180)
71 4e22_A Cytidylate kinase; P-lo 98.9 1.3E-08 4.3E-13 87.7 11.5 40 76-115 25-64 (252)
72 1q3t_A Cytidylate kinase; nucl 98.9 1.1E-08 3.7E-13 86.8 10.4 41 75-115 13-53 (236)
73 2qor_A Guanylate kinase; phosp 98.8 2.6E-08 8.9E-13 82.5 11.5 30 74-103 8-37 (204)
74 2qt1_A Nicotinamide riboside k 98.8 7.6E-09 2.6E-13 85.6 8.0 40 76-115 19-59 (207)
75 1p5z_B DCK, deoxycytidine kina 98.8 2.8E-08 9.6E-13 85.6 10.0 32 76-107 22-54 (263)
76 2yvu_A Probable adenylyl-sulfa 98.8 2.4E-08 8.1E-13 81.2 8.9 137 76-214 11-183 (186)
77 3ld9_A DTMP kinase, thymidylat 98.7 1.1E-08 3.8E-13 87.7 6.3 29 76-104 19-47 (223)
78 1x6v_B Bifunctional 3'-phospho 98.7 2.2E-07 7.5E-12 90.6 14.4 142 75-216 49-224 (630)
79 3uie_A Adenylyl-sulfate kinase 98.7 7.8E-08 2.7E-12 79.3 9.4 140 76-216 23-196 (200)
80 2pez_A Bifunctional 3'-phospho 98.7 1.2E-07 4.1E-12 76.6 10.2 41 76-116 3-47 (179)
81 3hdt_A Putative kinase; struct 98.6 2.4E-07 8E-12 79.2 11.6 40 76-116 12-51 (223)
82 3tau_A Guanylate kinase, GMP k 98.6 6.7E-07 2.3E-11 74.4 12.7 133 76-216 6-190 (208)
83 4i1u_A Dephospho-COA kinase; s 98.6 1.3E-06 4.3E-11 74.3 14.4 53 77-130 8-60 (210)
84 1ltq_A Polynucleotide kinase; 98.5 3.1E-08 1.1E-12 86.2 2.9 37 79-116 3-40 (301)
85 3tr0_A Guanylate kinase, GMP k 98.5 2.1E-06 7.3E-11 69.9 12.3 27 77-103 6-32 (205)
86 1m8p_A Sulfate adenylyltransfe 98.4 5.6E-07 1.9E-11 86.7 9.7 138 76-216 394-568 (573)
87 3zvl_A Bifunctional polynucleo 98.4 5.8E-07 2E-11 83.0 9.3 97 75-176 255-358 (416)
88 3r20_A Cytidylate kinase; stru 98.4 1.3E-07 4.5E-12 81.5 4.4 40 76-115 7-46 (233)
89 2j41_A Guanylate kinase; GMP, 98.4 1.7E-07 5.8E-12 76.6 4.8 26 77-102 5-30 (207)
90 1uj2_A Uridine-cytidine kinase 98.4 2E-07 6.7E-12 79.8 4.3 40 76-115 20-69 (252)
91 2ocp_A DGK, deoxyguanosine kin 98.4 2.2E-06 7.5E-11 72.5 10.5 28 77-104 1-29 (241)
92 2p5t_B PEZT; postsegregational 98.3 6.8E-07 2.3E-11 76.7 6.5 43 75-117 29-72 (253)
93 2ze6_A Isopentenyl transferase 98.3 4.4E-07 1.5E-11 78.2 5.4 35 79-113 2-36 (253)
94 2gks_A Bifunctional SAT/APS ki 98.3 1.5E-06 5.1E-11 83.3 8.5 139 77-216 371-542 (546)
95 1ex7_A Guanylate kinase; subst 98.3 6.7E-06 2.3E-10 68.4 11.5 22 81-102 4-25 (186)
96 1kgd_A CASK, peripheral plasma 98.3 2.9E-06 1E-10 68.8 8.8 29 75-103 2-30 (180)
97 1gvn_B Zeta; postsegregational 98.3 5.5E-07 1.9E-11 79.2 4.4 41 75-116 30-72 (287)
98 3a00_A Guanylate kinase, GMP k 98.2 5.2E-06 1.8E-10 67.6 8.6 25 79-103 2-26 (186)
99 1zp6_A Hypothetical protein AT 98.1 1.9E-06 6.5E-11 69.6 4.4 39 76-114 7-47 (191)
100 3cr8_A Sulfate adenylyltranfer 98.1 1.9E-06 6.4E-11 82.8 4.6 137 76-216 367-541 (552)
101 3ney_A 55 kDa erythrocyte memb 98.1 2E-05 6.7E-10 66.2 9.8 29 75-103 16-44 (197)
102 1g8f_A Sulfate adenylyltransfe 98.1 3.7E-06 1.3E-10 80.1 5.9 29 76-104 393-421 (511)
103 2vp4_A Deoxynucleoside kinase; 98.0 4.3E-05 1.5E-09 64.3 11.3 27 75-101 17-43 (230)
104 3lnc_A Guanylate kinase, GMP k 98.0 9.7E-06 3.3E-10 68.0 6.6 27 76-102 25-52 (231)
105 3crm_A TRNA delta(2)-isopenten 98.0 4.2E-06 1.4E-10 75.4 4.3 34 79-112 6-39 (323)
106 3a8t_A Adenylate isopentenyltr 97.9 5.5E-06 1.9E-10 75.2 3.5 36 77-112 39-74 (339)
107 1a7j_A Phosphoribulokinase; tr 97.9 3.7E-06 1.3E-10 74.1 1.7 38 77-114 4-46 (290)
108 3asz_A Uridine kinase; cytidin 97.8 8.6E-06 3E-10 66.9 3.4 39 76-114 4-44 (211)
109 3t15_A Ribulose bisphosphate c 97.8 1.6E-05 5.4E-10 69.7 5.1 38 76-113 34-73 (293)
110 2bdt_A BH3686; alpha-beta prot 97.8 1.2E-05 4.3E-10 65.0 3.9 35 79-113 3-38 (189)
111 3d3q_A TRNA delta(2)-isopenten 97.8 1.3E-05 4.6E-10 72.6 3.9 34 79-112 8-41 (340)
112 3exa_A TRNA delta(2)-isopenten 97.8 1.6E-05 5.5E-10 71.6 4.2 36 77-112 2-37 (322)
113 2ga8_A Hypothetical 39.9 kDa p 97.7 1.6E-05 5.6E-10 72.5 3.6 30 77-106 23-52 (359)
114 2axn_A 6-phosphofructo-2-kinas 97.7 1.5E-05 5.2E-10 75.8 3.2 39 77-115 34-77 (520)
115 3foz_A TRNA delta(2)-isopenten 97.7 2.7E-05 9.4E-10 69.9 4.5 36 77-112 9-44 (316)
116 1lv7_A FTSH; alpha/beta domain 97.7 4.3E-05 1.5E-09 64.8 5.5 30 80-109 47-76 (257)
117 1dek_A Deoxynucleoside monopho 97.7 1.9E-05 6.5E-10 68.2 3.3 38 79-116 2-39 (241)
118 1gtv_A TMK, thymidylate kinase 97.6 1E-05 3.5E-10 66.3 0.7 26 79-104 1-26 (214)
119 3c8u_A Fructokinase; YP_612366 97.6 3.5E-05 1.2E-09 63.7 3.8 36 76-111 20-60 (208)
120 2x8a_A Nuclear valosin-contain 97.6 4.8E-05 1.6E-09 66.2 4.6 36 72-109 40-75 (274)
121 1jbk_A CLPB protein; beta barr 97.6 9.2E-05 3.2E-09 58.1 5.8 24 79-102 44-67 (195)
122 1rz3_A Hypothetical protein rb 97.6 7.2E-05 2.5E-09 61.6 5.4 28 75-102 19-46 (201)
123 2qz4_A Paraplegin; AAA+, SPG7, 97.6 6E-05 2E-09 63.4 5.0 32 78-109 39-70 (262)
124 3syl_A Protein CBBX; photosynt 97.6 4.7E-05 1.6E-09 65.9 4.4 26 77-102 66-91 (309)
125 1ixz_A ATP-dependent metallopr 97.6 4.1E-05 1.4E-09 64.8 3.6 30 81-110 52-81 (254)
126 4b4t_J 26S protease regulatory 97.5 5.6E-05 1.9E-09 70.0 4.6 42 72-115 178-221 (405)
127 2jeo_A Uridine-cytidine kinase 97.5 6.4E-05 2.2E-09 63.7 4.5 31 75-105 22-52 (245)
128 3ec2_A DNA replication protein 97.5 7.2E-05 2.5E-09 60.0 4.4 38 77-114 37-80 (180)
129 3hws_A ATP-dependent CLP prote 97.5 6.9E-05 2.4E-09 67.1 4.7 34 77-110 50-83 (363)
130 3b9p_A CG5977-PA, isoform A; A 97.5 7.5E-05 2.6E-09 64.4 4.4 36 78-113 54-91 (297)
131 3h4m_A Proteasome-activating n 97.5 8.4E-05 2.9E-09 63.6 4.5 32 78-109 51-82 (285)
132 4b4t_M 26S protease regulatory 97.5 7.8E-05 2.7E-09 69.6 4.4 38 78-115 215-254 (434)
133 3cf0_A Transitional endoplasmi 97.5 8.9E-05 3E-09 64.9 4.6 37 78-114 49-87 (301)
134 2p65_A Hypothetical protein PF 97.5 0.00012 4.1E-09 57.5 4.9 24 79-102 44-67 (187)
135 1d2n_A N-ethylmaleimide-sensit 97.5 0.00011 3.7E-09 62.9 5.0 33 77-109 63-95 (272)
136 3ch4_B Pmkase, phosphomevalona 97.4 8.7E-05 3E-09 62.7 3.9 39 77-115 10-51 (202)
137 1g41_A Heat shock protein HSLU 97.4 9.9E-05 3.4E-09 69.1 4.7 34 77-110 49-82 (444)
138 4b4t_K 26S protease regulatory 97.4 9.5E-05 3.3E-09 68.9 4.5 30 80-109 208-237 (428)
139 1ofh_A ATP-dependent HSL prote 97.4 0.00011 3.9E-09 63.0 4.6 33 77-109 49-81 (310)
140 4b4t_L 26S protease subunit RP 97.4 9.8E-05 3.4E-09 69.0 4.4 37 79-115 216-254 (437)
141 1bif_A 6-phosphofructo-2-kinas 97.4 4.1E-05 1.4E-09 71.5 1.8 30 76-105 37-66 (469)
142 1odf_A YGR205W, hypothetical 3 97.4 0.0001 3.5E-09 65.0 4.3 39 75-113 28-74 (290)
143 1sq5_A Pantothenate kinase; P- 97.4 0.00012 4E-09 64.7 4.6 38 75-112 77-121 (308)
144 3pfi_A Holliday junction ATP-d 97.4 0.00012 4.1E-09 64.3 4.7 32 79-110 56-87 (338)
145 3eph_A TRNA isopentenyltransfe 97.4 9.8E-05 3.3E-09 68.5 4.2 33 79-111 3-35 (409)
146 3eie_A Vacuolar protein sortin 97.4 0.00014 4.8E-09 64.2 5.0 37 78-114 51-89 (322)
147 1njg_A DNA polymerase III subu 97.4 0.00015 5.2E-09 58.7 4.9 54 41-104 18-71 (250)
148 2r62_A Cell division protease 97.4 6E-05 2.1E-09 64.1 2.4 29 81-109 47-75 (268)
149 2qby_A CDC6 homolog 1, cell di 97.4 0.00025 8.6E-09 62.3 6.4 64 36-109 13-82 (386)
150 1um8_A ATP-dependent CLP prote 97.4 0.00013 4.5E-09 65.4 4.7 32 78-109 72-103 (376)
151 2chg_A Replication factor C sm 97.3 0.00018 6.3E-09 57.7 4.8 50 42-102 13-62 (226)
152 1iy2_A ATP-dependent metallopr 97.3 0.00018 6.3E-09 61.8 5.0 30 81-110 76-105 (278)
153 3tqc_A Pantothenate kinase; bi 97.3 0.00018 6.2E-09 64.5 4.8 38 75-112 89-133 (321)
154 4b4t_I 26S protease regulatory 97.3 0.00014 4.8E-09 68.0 4.0 37 79-115 217-255 (437)
155 1ye8_A Protein THEP1, hypothet 97.3 0.00014 4.8E-09 59.4 3.5 27 79-105 1-27 (178)
156 4b4t_H 26S protease regulatory 97.3 0.00014 4.8E-09 68.5 4.0 38 78-115 243-282 (467)
157 3bos_A Putative DNA replicatio 97.3 0.00016 5.3E-09 59.4 3.8 37 77-113 51-92 (242)
158 2kjq_A DNAA-related protein; s 97.3 0.00037 1.3E-08 55.2 5.5 26 77-102 35-60 (149)
159 2ce7_A Cell division protein F 97.2 0.00024 8.2E-09 67.0 5.0 30 80-109 51-80 (476)
160 2wjg_A FEOB, ferrous iron tran 97.2 0.00022 7.6E-09 56.5 4.0 30 72-101 1-30 (188)
161 2qp9_X Vacuolar protein sortin 97.2 0.0002 7E-09 64.3 4.0 36 79-114 85-122 (355)
162 2dhr_A FTSH; AAA+ protein, hex 97.2 0.00035 1.2E-08 66.2 5.7 37 72-110 60-96 (499)
163 1fnn_A CDC6P, cell division co 97.2 0.0004 1.4E-08 61.4 5.7 57 38-102 12-68 (389)
164 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.00025 8.5E-09 62.9 4.4 38 78-115 45-85 (322)
165 3d8b_A Fidgetin-like protein 1 97.2 0.00027 9.2E-09 63.5 4.4 37 77-113 116-154 (357)
166 2v1u_A Cell division control p 97.2 0.00026 8.8E-09 62.3 4.2 56 37-102 13-68 (387)
167 2qmh_A HPR kinase/phosphorylas 97.2 0.00022 7.4E-09 60.4 3.5 34 77-111 33-66 (205)
168 2c9o_A RUVB-like 1; hexameric 97.1 0.00032 1.1E-08 65.0 4.8 31 79-109 64-96 (456)
169 1lvg_A Guanylate kinase, GMP k 97.1 0.00023 7.8E-09 58.6 3.3 26 77-102 3-28 (198)
170 1in4_A RUVB, holliday junction 97.1 0.00031 1.1E-08 62.4 4.4 29 79-107 52-80 (334)
171 1sxj_D Activator 1 41 kDa subu 97.1 0.00061 2.1E-08 59.6 6.1 54 39-103 30-83 (353)
172 1hqc_A RUVB; extended AAA-ATPa 97.1 0.00027 9.1E-09 61.4 3.6 31 79-109 39-69 (324)
173 3te6_A Regulatory protein SIR3 97.1 0.00013 4.6E-09 65.3 1.7 44 52-102 26-69 (318)
174 3n70_A Transport activator; si 97.1 0.00028 9.7E-09 55.0 3.4 24 79-102 25-48 (145)
175 3vfd_A Spastin; ATPase, microt 97.1 0.00039 1.3E-08 62.9 4.7 32 78-109 148-179 (389)
176 2w58_A DNAI, primosome compone 97.1 0.00034 1.2E-08 56.8 3.9 35 79-113 55-94 (202)
177 2qby_B CDC6 homolog 3, cell di 97.1 0.00035 1.2E-08 61.9 4.0 46 50-102 24-69 (384)
178 1p6x_A Thymidine kinase; P-loo 97.0 0.00024 8.2E-09 64.2 2.6 33 72-104 1-33 (334)
179 4fcw_A Chaperone protein CLPB; 97.0 0.00045 1.5E-08 59.6 4.2 28 75-102 43-71 (311)
180 1l8q_A Chromosomal replication 97.0 0.00056 1.9E-08 59.9 4.4 37 77-113 36-77 (324)
181 1sxj_C Activator 1 40 kDa subu 96.9 0.00073 2.5E-08 59.7 5.0 53 40-103 19-71 (340)
182 4gp7_A Metallophosphoesterase; 96.9 0.0005 1.7E-08 55.1 3.6 36 77-115 8-43 (171)
183 1sxj_A Activator 1 95 kDa subu 96.9 0.00065 2.2E-08 64.0 4.8 32 78-109 77-108 (516)
184 3uk6_A RUVB-like 2; hexameric 96.9 0.00074 2.5E-08 59.7 4.7 32 78-109 70-103 (368)
185 1sxj_B Activator 1 37 kDa subu 96.9 0.00098 3.4E-08 57.3 5.3 52 40-102 15-66 (323)
186 3co5_A Putative two-component 96.9 0.00024 8.2E-09 55.4 1.3 30 79-109 28-57 (143)
187 2zan_A Vacuolar protein sortin 96.9 0.00066 2.3E-08 62.9 4.4 38 78-115 167-207 (444)
188 2r44_A Uncharacterized protein 96.9 0.00047 1.6E-08 60.5 3.2 29 80-108 48-76 (331)
189 1m7b_A RND3/RHOE small GTP-bin 96.9 0.00059 2E-08 54.2 3.5 30 72-101 1-30 (184)
190 3aez_A Pantothenate kinase; tr 96.9 0.00076 2.6E-08 60.0 4.4 29 75-103 87-115 (312)
191 1z6g_A Guanylate kinase; struc 96.9 0.00057 2E-08 57.1 3.4 27 76-102 21-47 (218)
192 3m6a_A ATP-dependent protease 96.9 0.00073 2.5E-08 64.3 4.5 33 77-109 107-139 (543)
193 1znw_A Guanylate kinase, GMP k 96.8 0.00071 2.4E-08 55.7 3.8 29 75-103 17-45 (207)
194 1upt_A ARL1, ADP-ribosylation 96.8 0.00091 3.1E-08 51.7 4.2 27 75-101 4-30 (171)
195 2chq_A Replication factor C sm 96.8 0.0011 3.8E-08 56.8 5.1 23 80-102 40-62 (319)
196 1svm_A Large T antigen; AAA+ f 96.8 0.00079 2.7E-08 61.6 4.3 33 76-108 167-199 (377)
197 1s96_A Guanylate kinase, GMP k 96.8 0.00073 2.5E-08 57.0 3.8 28 76-103 14-41 (219)
198 1iqp_A RFCS; clamp loader, ext 96.8 0.001 3.5E-08 57.3 4.8 24 80-103 48-71 (327)
199 1sxj_E Activator 1 40 kDa subu 96.8 0.001 3.4E-08 58.5 4.8 22 81-102 39-60 (354)
200 3cf2_A TER ATPase, transitiona 96.8 0.00064 2.2E-08 68.0 3.8 37 78-114 238-276 (806)
201 3pvs_A Replication-associated 96.8 0.00085 2.9E-08 62.5 4.4 32 79-110 51-82 (447)
202 1c9k_A COBU, adenosylcobinamid 96.8 0.00064 2.2E-08 56.2 3.2 30 81-111 2-33 (180)
203 3u61_B DNA polymerase accessor 96.8 0.0011 3.8E-08 57.8 4.7 31 79-109 49-79 (324)
204 1jr3_A DNA polymerase III subu 96.8 0.0012 4.1E-08 58.1 4.9 26 79-104 39-64 (373)
205 4a74_A DNA repair and recombin 96.8 0.00082 2.8E-08 55.0 3.6 28 75-102 22-49 (231)
206 2ehv_A Hypothetical protein PH 96.8 0.00083 2.8E-08 55.7 3.6 25 75-99 27-51 (251)
207 1z2a_A RAS-related protein RAB 96.7 0.00097 3.3E-08 51.3 3.6 26 76-101 3-28 (168)
208 2fn4_A P23, RAS-related protei 96.7 0.0011 3.8E-08 51.6 4.0 27 75-101 6-32 (181)
209 1kao_A RAP2A; GTP-binding prot 96.7 0.001 3.6E-08 50.8 3.7 25 77-101 2-26 (167)
210 3pxg_A Negative regulator of g 96.7 0.0012 4.1E-08 61.6 4.7 24 79-102 202-225 (468)
211 2oil_A CATX-8, RAS-related pro 96.7 0.0011 3.7E-08 52.9 3.8 28 74-101 21-48 (193)
212 2hxs_A RAB-26, RAS-related pro 96.7 0.0012 4.1E-08 51.5 3.9 27 75-101 3-29 (178)
213 2ce2_X GTPase HRAS; signaling 96.7 0.0011 3.9E-08 50.4 3.6 25 77-101 2-26 (166)
214 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0012 4E-08 53.9 3.9 26 77-102 22-47 (235)
215 2cvh_A DNA repair and recombin 96.7 0.0012 4.2E-08 53.7 4.0 35 76-110 18-54 (220)
216 3ihw_A Centg3; RAS, centaurin, 96.7 0.0013 4.3E-08 52.8 4.0 29 73-101 15-43 (184)
217 2y8e_A RAB-protein 6, GH09086P 96.7 0.0011 3.6E-08 51.6 3.3 28 74-101 10-37 (179)
218 3tw8_B RAS-related protein RAB 96.7 0.001 3.5E-08 51.8 3.2 28 74-101 5-32 (181)
219 3clv_A RAB5 protein, putative; 96.6 0.0016 5.6E-08 51.3 4.4 26 76-101 5-30 (208)
220 3hu3_A Transitional endoplasmi 96.6 0.0012 4.2E-08 62.2 4.2 36 78-113 238-275 (489)
221 1u8z_A RAS-related protein RAL 96.6 0.0014 4.7E-08 50.2 3.8 25 77-101 3-27 (168)
222 2bjv_A PSP operon transcriptio 96.6 0.0014 4.7E-08 55.6 3.9 25 79-103 30-54 (265)
223 1r2q_A RAS-related protein RAB 96.6 0.0011 3.9E-08 50.9 3.1 27 75-101 3-29 (170)
224 1tue_A Replication protein E1; 96.6 0.00096 3.3E-08 56.7 2.9 29 79-107 59-87 (212)
225 1n0w_A DNA repair protein RAD5 96.6 0.0012 4.1E-08 54.6 3.4 26 76-101 22-47 (243)
226 1vma_A Cell division protein F 96.6 0.0028 9.7E-08 56.2 5.9 27 76-102 102-128 (306)
227 2orw_A Thymidine kinase; TMTK, 96.6 0.0015 5.2E-08 53.4 3.8 26 77-102 2-27 (184)
228 3b9q_A Chloroplast SRP recepto 96.6 0.003 1E-07 55.8 6.0 28 75-102 97-124 (302)
229 1xjc_A MOBB protein homolog; s 96.6 0.0016 5.3E-08 53.3 3.8 26 77-102 3-28 (169)
230 1ky3_A GTP-binding protein YPT 96.6 0.0015 5.1E-08 50.9 3.6 26 76-101 6-31 (182)
231 1c1y_A RAS-related protein RAP 96.6 0.0016 5.5E-08 50.0 3.7 25 77-101 2-26 (167)
232 1z06_A RAS-related protein RAB 96.5 0.0015 5.2E-08 52.0 3.6 29 73-101 15-43 (189)
233 2wji_A Ferrous iron transport 96.5 0.0016 5.3E-08 51.0 3.6 25 77-101 2-26 (165)
234 3cf2_A TER ATPase, transitiona 96.5 0.0014 4.9E-08 65.5 4.0 40 78-117 511-552 (806)
235 1ypw_A Transitional endoplasmi 96.5 0.0013 4.4E-08 65.6 3.7 34 77-110 237-270 (806)
236 2nzj_A GTP-binding protein REM 96.5 0.0016 5.6E-08 50.5 3.6 25 77-101 3-27 (175)
237 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0018 6.3E-08 63.4 4.6 39 75-113 484-525 (758)
238 1oix_A RAS-related protein RAB 96.5 0.0017 5.7E-08 52.4 3.7 26 77-102 28-53 (191)
239 1z0j_A RAB-22, RAS-related pro 96.5 0.0016 5.5E-08 50.1 3.4 27 76-102 4-30 (170)
240 1z08_A RAS-related protein RAB 96.5 0.0017 5.9E-08 50.1 3.5 26 76-101 4-29 (170)
241 2a5j_A RAS-related protein RAB 96.5 0.0023 8E-08 51.0 4.3 28 74-101 17-44 (191)
242 1moz_A ARL1, ADP-ribosylation 96.5 0.0013 4.6E-08 51.5 2.9 25 76-100 16-40 (183)
243 2dr3_A UPF0273 protein PH0284; 96.5 0.0018 6.3E-08 53.5 3.7 35 76-110 21-60 (247)
244 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.0019 6.6E-08 50.6 3.6 26 76-101 3-28 (186)
245 2z4s_A Chromosomal replication 96.4 0.0023 8E-08 59.2 4.7 35 78-112 130-171 (440)
246 2bov_A RAla, RAS-related prote 96.4 0.0021 7E-08 51.4 3.8 28 74-101 10-37 (206)
247 2f9l_A RAB11B, member RAS onco 96.4 0.0019 6.5E-08 52.1 3.6 24 78-101 5-28 (199)
248 3pxi_A Negative regulator of g 96.4 0.0022 7.6E-08 63.0 4.7 25 78-102 201-225 (758)
249 2efe_B Small GTP-binding prote 96.4 0.0019 6.5E-08 50.5 3.5 27 75-101 9-35 (181)
250 2i3b_A HCR-ntpase, human cance 96.4 0.0018 6.2E-08 53.4 3.5 24 79-102 2-25 (189)
251 2erx_A GTP-binding protein DI- 96.4 0.0018 6.1E-08 49.8 3.3 25 77-101 2-26 (172)
252 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0019 6.4E-08 50.8 3.4 26 77-102 3-28 (189)
253 3con_A GTPase NRAS; structural 96.4 0.0019 6.4E-08 51.2 3.4 27 76-102 19-45 (190)
254 1g8p_A Magnesium-chelatase 38 96.4 0.0011 3.6E-08 58.1 2.1 24 80-103 47-70 (350)
255 3bc1_A RAS-related protein RAB 96.4 0.0022 7.5E-08 50.4 3.8 27 75-101 8-34 (195)
256 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0019 6.5E-08 50.3 3.4 26 76-101 5-30 (177)
257 3e70_C DPA, signal recognition 96.4 0.0024 8.3E-08 57.2 4.4 27 76-102 127-153 (328)
258 2h17_A ADP-ribosylation factor 96.4 0.0017 5.7E-08 51.5 3.0 29 73-101 16-44 (181)
259 2gj8_A MNME, tRNA modification 96.4 0.002 6.8E-08 51.0 3.5 25 77-101 3-27 (172)
260 1fzq_A ADP-ribosylation factor 96.4 0.0022 7.4E-08 51.1 3.7 27 75-101 13-39 (181)
261 2ged_A SR-beta, signal recogni 96.4 0.0023 7.8E-08 50.8 3.8 27 76-102 46-72 (193)
262 2a9k_A RAS-related protein RAL 96.4 0.0022 7.7E-08 50.1 3.6 27 75-101 15-41 (187)
263 1ek0_A Protein (GTP-binding pr 96.4 0.0021 7.2E-08 49.3 3.3 25 77-101 2-26 (170)
264 2dyk_A GTP-binding protein; GT 96.4 0.0024 8.2E-08 48.8 3.6 24 79-102 2-25 (161)
265 2lkc_A Translation initiation 96.4 0.0024 8.2E-08 49.7 3.6 27 75-101 5-31 (178)
266 3bwd_D RAC-like GTP-binding pr 96.4 0.0025 8.4E-08 49.8 3.7 26 76-101 6-31 (182)
267 3oes_A GTPase rhebl1; small GT 96.3 0.0022 7.7E-08 51.6 3.5 27 75-101 21-47 (201)
268 1vg8_A RAS-related protein RAB 96.3 0.0024 8.1E-08 51.2 3.6 28 75-102 5-32 (207)
269 1htw_A HI0065; nucleotide-bind 96.3 0.0031 1.1E-07 50.5 4.2 27 76-102 31-57 (158)
270 1cr0_A DNA primase/helicase; R 96.3 0.0025 8.7E-08 55.0 3.9 27 76-102 33-59 (296)
271 1g16_A RAS-related protein SEC 96.3 0.0025 8.6E-08 49.0 3.5 24 78-101 3-26 (170)
272 3t1o_A Gliding protein MGLA; G 96.3 0.0021 7.3E-08 50.7 3.1 28 76-103 12-39 (198)
273 3kkq_A RAS-related protein M-R 96.3 0.003 1E-07 49.6 3.9 27 75-101 15-41 (183)
274 2v9p_A Replication protein E1; 96.3 0.0026 8.9E-08 56.6 3.9 27 76-102 124-150 (305)
275 1rj9_A FTSY, signal recognitio 96.3 0.0029 9.9E-08 56.0 4.2 26 77-102 101-126 (304)
276 3pxi_A Negative regulator of g 96.3 0.0033 1.1E-07 61.8 5.0 42 74-115 516-563 (758)
277 1e2k_A Thymidine kinase; trans 96.3 0.0013 4.6E-08 59.2 2.1 28 76-103 2-29 (331)
278 2r2a_A Uncharacterized protein 96.3 0.0026 8.9E-08 53.0 3.6 25 77-101 4-28 (199)
279 1nrj_B SR-beta, signal recogni 96.3 0.0029 9.9E-08 51.4 3.8 27 76-102 10-36 (218)
280 2og2_A Putative signal recogni 96.3 0.0052 1.8E-07 55.8 5.9 28 75-102 154-181 (359)
281 2wsm_A Hydrogenase expression/ 96.3 0.0032 1.1E-07 51.4 4.1 26 77-102 29-54 (221)
282 1x3s_A RAS-related protein RAB 96.3 0.0024 8.3E-08 50.5 3.2 27 75-101 12-38 (195)
283 3q72_A GTP-binding protein RAD 96.3 0.0026 8.9E-08 48.9 3.3 23 78-100 2-24 (166)
284 2g6b_A RAS-related protein RAB 96.3 0.0029 9.9E-08 49.4 3.6 27 75-101 7-33 (180)
285 2zej_A Dardarin, leucine-rich 96.2 0.0021 7.2E-08 51.2 2.8 22 79-100 3-24 (184)
286 2hf9_A Probable hydrogenase ni 96.2 0.0033 1.1E-07 51.5 4.1 26 77-102 37-62 (226)
287 2atv_A RERG, RAS-like estrogen 96.2 0.0032 1.1E-07 50.4 3.8 26 76-101 26-51 (196)
288 3q85_A GTP-binding protein REM 96.2 0.0029 9.9E-08 48.8 3.5 22 79-100 3-24 (169)
289 1z0f_A RAB14, member RAS oncog 96.2 0.0032 1.1E-07 48.8 3.7 27 76-102 13-39 (179)
290 1ypw_A Transitional endoplasmi 96.2 0.0013 4.6E-08 65.5 1.8 39 77-115 510-550 (806)
291 1of1_A Thymidine kinase; trans 96.2 0.0018 6.3E-08 59.3 2.6 29 75-103 46-74 (376)
292 1yrb_A ATP(GTP)binding protein 96.2 0.0039 1.3E-07 52.3 4.5 29 74-102 10-38 (262)
293 3llu_A RAS-related GTP-binding 96.2 0.0021 7.1E-08 51.7 2.6 30 73-102 15-44 (196)
294 1w5s_A Origin recognition comp 96.2 0.0027 9.1E-08 56.6 3.5 49 49-102 25-76 (412)
295 3t5g_A GTP-binding protein RHE 96.2 0.0027 9.3E-08 49.8 3.2 25 77-101 5-29 (181)
296 1svi_A GTP-binding protein YSX 96.2 0.0032 1.1E-07 50.0 3.6 26 76-101 21-46 (195)
297 3tkl_A RAS-related protein RAB 96.2 0.0035 1.2E-07 49.7 3.8 26 76-101 14-39 (196)
298 3c5c_A RAS-like protein 12; GD 96.2 0.0032 1.1E-07 50.3 3.6 27 75-101 18-44 (187)
299 2bme_A RAB4A, RAS-related prot 96.2 0.0036 1.2E-07 49.1 3.8 26 76-101 8-33 (186)
300 2fna_A Conserved hypothetical 96.2 0.0052 1.8E-07 53.1 5.1 26 80-105 32-57 (357)
301 1lw7_A Transcriptional regulat 96.2 0.0027 9.1E-08 57.0 3.3 28 78-105 170-197 (365)
302 2px0_A Flagellar biosynthesis 96.2 0.0035 1.2E-07 55.2 4.0 26 77-102 104-129 (296)
303 3cph_A RAS-related protein SEC 96.2 0.0035 1.2E-07 50.5 3.7 28 74-101 16-43 (213)
304 1pui_A ENGB, probable GTP-bind 96.2 0.0018 6.1E-08 52.3 2.0 26 76-101 24-49 (210)
305 1zd9_A ADP-ribosylation factor 96.2 0.0033 1.1E-07 50.1 3.5 27 75-101 19-45 (188)
306 2yhs_A FTSY, cell division pro 96.1 0.0063 2.2E-07 57.8 5.9 40 75-114 290-333 (503)
307 2eyu_A Twitching motility prot 96.1 0.004 1.4E-07 53.7 4.3 26 77-102 24-49 (261)
308 1r8s_A ADP-ribosylation factor 96.1 0.0037 1.3E-07 47.9 3.6 23 79-101 1-23 (164)
309 2p5s_A RAS and EF-hand domain 96.1 0.0037 1.3E-07 50.3 3.7 27 75-101 25-51 (199)
310 2iwr_A Centaurin gamma 1; ANK 96.1 0.003 1E-07 49.4 3.1 26 76-101 5-30 (178)
311 4bas_A ADP-ribosylation factor 96.1 0.0033 1.1E-07 50.0 3.3 28 74-101 13-40 (199)
312 2b6h_A ADP-ribosylation factor 96.1 0.0037 1.3E-07 50.2 3.6 25 76-100 27-51 (192)
313 3pqc_A Probable GTP-binding pr 96.1 0.0036 1.2E-07 49.3 3.5 27 76-102 21-47 (195)
314 1m2o_B GTP-binding protein SAR 96.1 0.0034 1.2E-07 50.4 3.4 26 76-101 21-46 (190)
315 2qgz_A Helicase loader, putati 96.1 0.0038 1.3E-07 55.0 3.9 37 78-114 152-194 (308)
316 2q3h_A RAS homolog gene family 96.1 0.0038 1.3E-07 50.0 3.6 27 75-101 17-43 (201)
317 2qm8_A GTPase/ATPase; G protei 96.1 0.0043 1.5E-07 55.5 4.2 27 76-102 53-79 (337)
318 1ksh_A ARF-like protein 2; sma 96.1 0.0039 1.3E-07 49.2 3.5 27 76-102 16-42 (186)
319 2fg5_A RAB-22B, RAS-related pr 96.1 0.0036 1.2E-07 50.1 3.3 27 75-101 20-46 (192)
320 1np6_A Molybdopterin-guanine d 96.1 0.0045 1.5E-07 50.4 4.0 25 78-102 6-30 (174)
321 1gwn_A RHO-related GTP-binding 96.1 0.0038 1.3E-07 51.1 3.5 27 75-101 25-51 (205)
322 3reg_A RHO-like small GTPase; 96.1 0.0038 1.3E-07 49.8 3.4 27 75-101 20-46 (194)
323 1nlf_A Regulatory protein REPA 96.1 0.0035 1.2E-07 53.8 3.4 27 76-102 28-54 (279)
324 2gf9_A RAS-related protein RAB 96.0 0.0051 1.7E-07 48.8 4.1 26 76-101 20-45 (189)
325 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0044 1.5E-07 49.9 3.7 26 76-101 6-31 (206)
326 1zj6_A ADP-ribosylation factor 96.0 0.0046 1.6E-07 49.0 3.7 26 76-101 14-39 (187)
327 3p32_A Probable GTPase RV1496/ 96.0 0.0047 1.6E-07 55.4 4.2 27 76-102 77-103 (355)
328 2gf0_A GTP-binding protein DI- 96.0 0.0053 1.8E-07 48.7 3.9 26 76-101 6-31 (199)
329 4dkx_A RAS-related protein RAB 96.0 0.0046 1.6E-07 51.7 3.7 28 74-101 9-36 (216)
330 2www_A Methylmalonic aciduria 96.0 0.005 1.7E-07 55.2 4.2 26 77-102 73-98 (349)
331 2qen_A Walker-type ATPase; unk 96.0 0.0037 1.3E-07 54.0 3.2 50 48-110 14-63 (350)
332 1qvr_A CLPB protein; coiled co 96.0 0.0041 1.4E-07 62.0 3.9 34 75-108 584-621 (854)
333 3dz8_A RAS-related protein RAB 95.9 0.0051 1.7E-07 49.0 3.7 27 76-102 21-47 (191)
334 2b8t_A Thymidine kinase; deoxy 95.9 0.0057 2E-07 51.9 4.1 27 76-102 10-36 (223)
335 2fh5_B SR-beta, signal recogni 95.9 0.0047 1.6E-07 50.0 3.5 27 76-102 5-31 (214)
336 3k53_A Ferrous iron transport 95.9 0.0048 1.6E-07 52.8 3.6 25 77-101 2-26 (271)
337 3tif_A Uncharacterized ABC tra 95.9 0.004 1.4E-07 52.8 3.1 27 76-102 29-55 (235)
338 2zts_A Putative uncharacterize 95.9 0.0057 1.9E-07 50.5 3.9 27 74-100 26-52 (251)
339 3lxx_A GTPase IMAP family memb 95.9 0.0047 1.6E-07 51.5 3.4 27 76-102 27-53 (239)
340 2cxx_A Probable GTP-binding pr 95.9 0.0045 1.5E-07 48.6 3.2 23 79-101 2-24 (190)
341 1f6b_A SAR1; gtpases, N-termin 95.9 0.0047 1.6E-07 50.0 3.3 25 76-100 23-47 (198)
342 2ew1_A RAS-related protein RAB 95.9 0.0051 1.8E-07 50.2 3.6 27 75-101 23-49 (201)
343 1qvr_A CLPB protein; coiled co 95.9 0.0044 1.5E-07 61.8 3.7 24 79-102 192-215 (854)
344 3kl4_A SRP54, signal recogniti 95.9 0.0051 1.7E-07 57.3 3.9 26 77-102 96-121 (433)
345 1ojl_A Transcriptional regulat 95.9 0.006 2E-07 53.5 4.2 33 79-111 26-63 (304)
346 2j1l_A RHO-related GTP-binding 95.9 0.005 1.7E-07 50.3 3.5 26 76-101 32-57 (214)
347 2fv8_A H6, RHO-related GTP-bin 95.9 0.005 1.7E-07 49.9 3.4 27 75-101 22-48 (207)
348 4gzl_A RAS-related C3 botulinu 95.9 0.0056 1.9E-07 49.6 3.6 26 76-101 28-53 (204)
349 1zbd_A Rabphilin-3A; G protein 95.9 0.0056 1.9E-07 49.0 3.6 25 77-101 7-31 (203)
350 1u0j_A DNA replication protein 95.8 0.0066 2.3E-07 53.1 4.3 26 79-104 105-130 (267)
351 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.0035 1.2E-07 59.4 2.6 25 79-103 42-66 (500)
352 2pcj_A ABC transporter, lipopr 95.8 0.0044 1.5E-07 52.1 2.9 27 76-102 28-54 (224)
353 1pzn_A RAD51, DNA repair and r 95.8 0.0052 1.8E-07 55.2 3.6 29 74-102 127-155 (349)
354 2h57_A ADP-ribosylation factor 95.8 0.0044 1.5E-07 49.2 2.8 28 75-102 18-45 (190)
355 2gco_A H9, RHO-related GTP-bin 95.8 0.0059 2E-07 49.2 3.6 26 76-101 23-48 (201)
356 2hup_A RAS-related protein RAB 95.8 0.0057 2E-07 49.5 3.4 26 76-101 27-52 (201)
357 2cbz_A Multidrug resistance-as 95.8 0.0049 1.7E-07 52.4 3.1 27 76-102 29-55 (237)
358 2j0v_A RAC-like GTP-binding pr 95.8 0.007 2.4E-07 48.9 3.8 26 76-101 7-32 (212)
359 3dm5_A SRP54, signal recogniti 95.7 0.0066 2.2E-07 56.7 4.1 26 77-102 99-124 (443)
360 3sop_A Neuronal-specific septi 95.7 0.0063 2.1E-07 52.8 3.7 24 79-102 3-26 (270)
361 3a1s_A Iron(II) transport prot 95.7 0.0054 1.9E-07 52.6 3.3 27 75-101 2-28 (258)
362 2xtp_A GTPase IMAP family memb 95.7 0.0063 2.2E-07 51.3 3.6 27 76-102 20-46 (260)
363 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0063 2.1E-07 54.9 3.7 33 77-109 122-156 (331)
364 3q3j_B RHO-related GTP-binding 95.7 0.0069 2.4E-07 49.6 3.7 26 76-101 25-50 (214)
365 2il1_A RAB12; G-protein, GDP, 95.7 0.0062 2.1E-07 48.7 3.3 26 76-101 24-49 (192)
366 2o52_A RAS-related protein RAB 95.7 0.0058 2E-07 49.3 3.2 26 76-101 23-48 (200)
367 3hr8_A Protein RECA; alpha and 95.7 0.007 2.4E-07 54.9 4.0 37 75-111 58-99 (356)
368 2i1q_A DNA repair and recombin 95.7 0.0059 2E-07 53.5 3.4 26 76-101 96-121 (322)
369 2p67_A LAO/AO transport system 95.7 0.0076 2.6E-07 53.7 4.1 27 76-102 54-80 (341)
370 1mv5_A LMRA, multidrug resista 95.7 0.0059 2E-07 51.9 3.2 27 76-102 26-52 (243)
371 1b0u_A Histidine permease; ABC 95.7 0.0056 1.9E-07 52.8 3.1 27 76-102 30-56 (262)
372 2x77_A ADP-ribosylation factor 95.7 0.0052 1.8E-07 48.6 2.7 25 76-100 20-44 (189)
373 3cbq_A GTP-binding protein REM 95.7 0.0053 1.8E-07 49.6 2.8 24 77-100 22-45 (195)
374 2cjw_A GTP-binding protein GEM 95.7 0.0082 2.8E-07 48.3 3.9 25 77-101 5-29 (192)
375 3b85_A Phosphate starvation-in 95.7 0.0047 1.6E-07 51.6 2.5 25 77-101 21-45 (208)
376 2onk_A Molybdate/tungstate ABC 95.7 0.0062 2.1E-07 52.0 3.3 24 79-102 25-48 (240)
377 2fu5_C RAS-related protein RAB 95.7 0.0043 1.5E-07 48.7 2.1 25 77-101 7-31 (183)
378 2f1r_A Molybdopterin-guanine d 95.7 0.0034 1.2E-07 51.0 1.6 24 80-103 4-27 (171)
379 2atx_A Small GTP binding prote 95.6 0.006 2E-07 48.5 2.9 26 76-101 16-41 (194)
380 2ewv_A Twitching motility prot 95.6 0.0082 2.8E-07 54.4 4.2 27 77-103 135-161 (372)
381 2d2e_A SUFC protein; ABC-ATPas 95.6 0.0071 2.4E-07 51.7 3.5 26 76-101 27-52 (250)
382 3gfo_A Cobalt import ATP-bindi 95.6 0.0057 2E-07 53.4 2.9 27 76-102 32-58 (275)
383 1v5w_A DMC1, meiotic recombina 95.6 0.0091 3.1E-07 53.3 4.3 27 75-101 119-145 (343)
384 4g1u_C Hemin import ATP-bindin 95.6 0.006 2.1E-07 52.8 3.0 27 76-102 35-61 (266)
385 2ff7_A Alpha-hemolysin translo 95.6 0.006 2.1E-07 52.2 3.0 28 76-103 33-60 (247)
386 2qu8_A Putative nucleolar GTP- 95.6 0.0083 2.8E-07 49.5 3.7 26 76-101 27-52 (228)
387 1osn_A Thymidine kinase, VZV-T 95.6 0.0045 1.5E-07 56.0 2.2 29 76-104 10-39 (341)
388 2f7s_A C25KG, RAS-related prot 95.6 0.0075 2.6E-07 48.9 3.4 26 76-101 23-48 (217)
389 1g6h_A High-affinity branched- 95.6 0.0061 2.1E-07 52.3 3.0 27 76-102 31-57 (257)
390 2olj_A Amino acid ABC transpor 95.6 0.0063 2.2E-07 52.7 3.1 27 76-102 48-74 (263)
391 2zu0_C Probable ATP-dependent 95.6 0.0077 2.6E-07 52.1 3.6 26 76-101 44-69 (267)
392 1zcb_A G alpha I/13; GTP-bindi 95.6 0.0092 3.1E-07 54.1 4.3 28 76-103 31-58 (362)
393 2ixe_A Antigen peptide transpo 95.6 0.0064 2.2E-07 52.7 3.1 28 76-103 43-70 (271)
394 1ji0_A ABC transporter; ATP bi 95.6 0.0063 2.2E-07 51.7 3.0 27 76-102 30-56 (240)
395 2ghi_A Transport protein; mult 95.6 0.0065 2.2E-07 52.3 3.1 28 76-103 44-71 (260)
396 3gj0_A GTP-binding nuclear pro 95.6 0.0068 2.3E-07 49.5 3.1 29 74-102 11-40 (221)
397 1r6b_X CLPA protein; AAA+, N-t 95.6 0.01 3.5E-07 58.1 4.8 26 77-102 206-231 (758)
398 2pze_A Cystic fibrosis transme 95.5 0.0065 2.2E-07 51.2 3.0 28 76-103 32-59 (229)
399 1zu4_A FTSY; GTPase, signal re 95.5 0.0096 3.3E-07 53.0 4.2 28 75-102 102-129 (320)
400 1sgw_A Putative ABC transporte 95.5 0.006 2.1E-07 51.3 2.6 27 76-102 33-59 (214)
401 2r8r_A Sensor protein; KDPD, P 95.5 0.011 3.8E-07 50.5 4.3 33 78-110 6-43 (228)
402 2v3c_C SRP54, signal recogniti 95.5 0.007 2.4E-07 56.2 3.2 26 77-102 98-123 (432)
403 3lda_A DNA repair protein RAD5 95.5 0.0073 2.5E-07 55.5 3.3 29 73-101 173-201 (400)
404 2aka_B Dynamin-1; fusion prote 95.5 0.014 4.7E-07 49.9 4.9 26 76-101 24-49 (299)
405 1a5t_A Delta prime, HOLB; zinc 95.5 0.01 3.6E-07 52.4 4.2 27 79-105 25-51 (334)
406 1vpl_A ABC transporter, ATP-bi 95.5 0.0074 2.5E-07 52.0 3.1 27 76-102 39-65 (256)
407 1xx6_A Thymidine kinase; NESG, 95.5 0.012 4E-07 48.7 4.2 27 76-102 6-32 (191)
408 3lxw_A GTPase IMAP family memb 95.5 0.0087 3E-07 50.7 3.5 26 76-101 19-44 (247)
409 3k1j_A LON protease, ATP-depen 95.4 0.0073 2.5E-07 58.0 3.2 25 79-103 61-85 (604)
410 2ihy_A ABC transporter, ATP-bi 95.4 0.0075 2.6E-07 52.6 3.0 27 76-102 45-71 (279)
411 3cpj_B GTP-binding protein YPT 95.4 0.0097 3.3E-07 48.8 3.5 26 76-101 11-36 (223)
412 2gza_A Type IV secretion syste 95.4 0.0069 2.4E-07 54.6 2.8 27 77-103 174-200 (361)
413 2qi9_C Vitamin B12 import ATP- 95.4 0.0077 2.6E-07 51.7 3.0 27 76-102 24-50 (249)
414 2zr9_A Protein RECA, recombina 95.4 0.0099 3.4E-07 53.5 3.8 36 76-111 59-99 (349)
415 2yz2_A Putative ABC transporte 95.4 0.008 2.7E-07 51.9 3.1 27 76-102 31-57 (266)
416 3tqf_A HPR(Ser) kinase; transf 95.4 0.012 4.2E-07 48.6 4.0 31 77-108 15-45 (181)
417 2j37_W Signal recognition part 95.3 0.011 3.9E-07 55.9 4.1 27 76-102 99-125 (504)
418 2z43_A DNA repair and recombin 95.3 0.012 4.1E-07 51.9 4.0 27 76-102 105-131 (324)
419 2nq2_C Hypothetical ABC transp 95.3 0.0084 2.9E-07 51.5 2.9 27 76-102 29-55 (253)
420 2g3y_A GTP-binding protein GEM 95.3 0.011 3.8E-07 49.1 3.6 25 76-100 35-59 (211)
421 2yc2_C IFT27, small RAB-relate 95.2 0.0036 1.2E-07 50.0 0.2 26 76-101 18-43 (208)
422 3jvv_A Twitching mobility prot 95.2 0.015 5.1E-07 52.6 4.3 23 80-102 125-147 (356)
423 2npi_A Protein CLP1; CLP1-PCF1 95.2 0.01 3.6E-07 55.4 3.3 27 76-102 136-162 (460)
424 3fvq_A Fe(3+) IONS import ATP- 95.1 0.012 4.3E-07 53.4 3.5 27 76-102 28-54 (359)
425 3b1v_A Ferrous iron uptake tra 95.1 0.013 4.5E-07 50.8 3.5 25 77-101 2-26 (272)
426 2yyz_A Sugar ABC transporter, 95.1 0.013 4.5E-07 53.1 3.6 27 76-102 27-53 (359)
427 4dhe_A Probable GTP-binding pr 95.1 0.0071 2.4E-07 49.2 1.6 27 76-102 27-53 (223)
428 3th5_A RAS-related C3 botulinu 94.0 0.0039 1.3E-07 50.2 0.0 25 76-100 28-52 (204)
429 1j8m_F SRP54, signal recogniti 95.0 0.014 4.8E-07 51.3 3.5 26 77-102 97-122 (297)
430 3i8s_A Ferrous iron transport 95.0 0.015 5.2E-07 50.0 3.7 25 77-101 2-26 (274)
431 3rlf_A Maltose/maltodextrin im 95.0 0.014 4.8E-07 53.5 3.6 28 76-103 27-54 (381)
432 1ls1_A Signal recognition part 95.0 0.017 6E-07 50.5 4.1 26 77-102 97-122 (295)
433 2it1_A 362AA long hypothetical 95.0 0.014 4.9E-07 52.9 3.6 28 76-103 27-54 (362)
434 1ega_A Protein (GTP-binding pr 95.0 0.014 4.7E-07 51.2 3.3 26 76-101 6-31 (301)
435 1u94_A RECA protein, recombina 95.0 0.016 5.5E-07 52.4 3.8 35 76-110 61-100 (356)
436 1z47_A CYSA, putative ABC-tran 95.0 0.014 4.9E-07 52.8 3.5 27 76-102 39-65 (355)
437 2rcn_A Probable GTPase ENGC; Y 95.0 0.014 4.8E-07 53.0 3.5 27 77-103 214-240 (358)
438 4djt_A GTP-binding nuclear pro 95.0 0.0061 2.1E-07 49.5 0.9 25 76-100 9-33 (218)
439 1v43_A Sugar-binding transport 94.9 0.015 5.2E-07 53.0 3.6 27 76-102 35-61 (372)
440 2bbs_A Cystic fibrosis transme 94.9 0.013 4.4E-07 51.5 3.0 28 75-102 61-88 (290)
441 1p9r_A General secretion pathw 94.9 0.02 6.8E-07 52.9 4.4 27 77-103 166-192 (418)
442 2yv5_A YJEQ protein; hydrolase 94.9 0.016 5.5E-07 50.8 3.5 25 77-102 164-188 (302)
443 2pjz_A Hypothetical protein ST 94.9 0.013 4.5E-07 50.7 2.9 25 78-102 30-54 (263)
444 2qnr_A Septin-2, protein NEDD5 94.9 0.014 4.8E-07 51.2 3.1 23 78-100 18-40 (301)
445 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.0095 3.2E-07 53.1 2.0 27 77-103 170-196 (330)
446 1g29_1 MALK, maltose transport 94.8 0.016 5.6E-07 52.7 3.5 26 77-102 28-53 (372)
447 1jwy_B Dynamin A GTPase domain 94.8 0.028 9.7E-07 48.4 4.8 26 76-101 22-47 (315)
448 3f9v_A Minichromosome maintena 94.8 0.0065 2.2E-07 58.5 0.8 27 79-105 328-354 (595)
449 3upu_A ATP-dependent DNA helic 94.8 0.018 6.1E-07 53.2 3.7 23 80-102 47-69 (459)
450 3tui_C Methionine import ATP-b 94.8 0.018 6.3E-07 52.4 3.6 28 75-102 51-78 (366)
451 3bh0_A DNAB-like replicative h 94.7 0.022 7.5E-07 50.1 4.0 27 76-102 66-92 (315)
452 3nh6_A ATP-binding cassette SU 94.7 0.01 3.5E-07 52.6 1.8 29 75-103 77-105 (306)
453 3d31_A Sulfate/molybdate ABC t 94.7 0.012 4.2E-07 53.1 2.3 27 76-102 24-50 (348)
454 2xxa_A Signal recognition part 94.7 0.025 8.5E-07 52.5 4.3 27 76-102 98-124 (433)
455 1ni3_A YCHF GTPase, YCHF GTP-b 94.6 0.023 7.9E-07 52.1 4.0 26 75-100 17-42 (392)
456 1u0l_A Probable GTPase ENGC; p 94.6 0.016 5.5E-07 50.7 2.8 26 77-102 168-193 (301)
457 3gd7_A Fusion complex of cysti 94.6 0.02 6.8E-07 52.5 3.5 28 75-102 44-71 (390)
458 2r6a_A DNAB helicase, replicat 94.6 0.023 8E-07 52.4 4.0 27 76-102 201-227 (454)
459 3r7w_A Gtpase1, GTP-binding pr 94.6 0.021 7.1E-07 50.0 3.6 25 77-101 2-26 (307)
460 2qag_B Septin-6, protein NEDD5 94.6 0.018 6E-07 53.6 3.2 22 80-101 44-65 (427)
461 1mky_A Probable GTP-binding pr 94.6 0.022 7.4E-07 52.4 3.7 25 77-101 179-203 (439)
462 1tq4_A IIGP1, interferon-induc 94.6 0.021 7.2E-07 52.7 3.6 25 77-101 68-92 (413)
463 3kta_A Chromosome segregation 94.5 0.031 1.1E-06 44.2 4.1 24 80-103 28-51 (182)
464 2oap_1 GSPE-2, type II secreti 94.5 0.016 5.6E-07 54.8 2.8 26 77-102 259-284 (511)
465 1tf7_A KAIC; homohexamer, hexa 94.5 0.021 7.1E-07 53.8 3.4 23 76-98 37-59 (525)
466 3shw_A Tight junction protein 94.4 0.16 5.4E-06 47.7 9.2 126 76-215 222-373 (468)
467 1oxx_K GLCV, glucose, ABC tran 94.4 0.013 4.3E-07 53.0 1.6 27 76-102 29-55 (353)
468 3l0i_B RAS-related protein RAB 94.4 0.0059 2E-07 49.0 -0.5 25 76-100 31-55 (199)
469 3iby_A Ferrous iron transport 94.3 0.024 8.2E-07 48.5 3.2 23 79-101 2-24 (256)
470 3def_A T7I23.11 protein; chlor 94.3 0.028 9.7E-07 47.7 3.5 26 76-101 34-59 (262)
471 3tsz_A Tight junction protein 94.3 0.36 1.2E-05 44.0 11.2 126 76-215 230-381 (391)
472 3e1s_A Exodeoxyribonuclease V, 94.3 0.027 9.1E-07 54.0 3.7 24 79-102 205-228 (574)
473 1h65_A Chloroplast outer envel 94.3 0.028 9.5E-07 47.9 3.5 25 77-101 38-62 (270)
474 3io5_A Recombination and repai 94.3 0.033 1.1E-06 50.2 4.1 38 72-111 24-68 (333)
475 2j9r_A Thymidine kinase; TK1, 94.3 0.05 1.7E-06 46.0 5.0 28 75-102 25-52 (214)
476 3o47_A ADP-ribosylation factor 94.3 0.023 7.8E-07 50.3 3.0 26 76-101 163-188 (329)
477 2obl_A ESCN; ATPase, hydrolase 94.3 0.03 1E-06 50.4 3.8 29 76-104 69-97 (347)
478 1z6t_A APAF-1, apoptotic prote 94.2 0.036 1.2E-06 52.1 4.5 43 49-100 127-169 (591)
479 3iev_A GTP-binding protein ERA 94.2 0.028 9.4E-07 49.3 3.4 28 74-101 6-33 (308)
480 3kfv_A Tight junction protein 94.2 0.22 7.4E-06 44.3 9.2 129 80-216 147-291 (308)
481 3t5d_A Septin-7; GTP-binding p 94.2 0.027 9.1E-07 48.2 3.2 22 78-99 8-29 (274)
482 2e87_A Hypothetical protein PH 94.2 0.029 1E-06 50.0 3.5 26 76-101 165-190 (357)
483 1tf7_A KAIC; homohexamer, hexa 94.1 0.028 9.6E-07 52.9 3.5 29 74-102 277-305 (525)
484 2wkq_A NPH1-1, RAS-related C3 94.1 0.035 1.2E-06 47.7 3.9 26 76-101 153-178 (332)
485 2ffh_A Protein (FFH); SRP54, s 94.1 0.035 1.2E-06 51.5 4.1 26 77-102 97-122 (425)
486 3ozx_A RNAse L inhibitor; ATP 94.1 0.027 9.3E-07 53.6 3.3 28 75-102 22-49 (538)
487 2dpy_A FLII, flagellum-specifi 94.0 0.035 1.2E-06 51.5 3.8 29 76-104 155-183 (438)
488 1xp8_A RECA protein, recombina 94.0 0.035 1.2E-06 50.3 3.8 35 77-111 73-112 (366)
489 2qag_C Septin-7; cell cycle, c 94.0 0.026 8.9E-07 52.2 2.9 24 79-102 32-55 (418)
490 4dcu_A GTP-binding protein ENG 94.0 0.029 1E-06 51.8 3.2 27 75-101 20-46 (456)
491 2q6t_A DNAB replication FORK h 93.9 0.043 1.5E-06 50.5 4.3 27 76-102 198-224 (444)
492 1nij_A Hypothetical protein YJ 93.9 0.031 1.1E-06 49.2 3.2 25 78-102 4-28 (318)
493 2xtz_A Guanine nucleotide-bind 93.9 0.044 1.5E-06 49.5 4.2 28 76-103 7-34 (354)
494 1t9h_A YLOQ, probable GTPase E 93.9 0.012 4.1E-07 52.3 0.4 26 77-102 172-197 (307)
495 3c5h_A Glucocorticoid receptor 93.8 0.054 1.9E-06 45.8 4.5 26 75-100 16-50 (255)
496 3tvt_A Disks large 1 tumor sup 93.8 0.27 9.3E-06 43.2 9.0 136 76-218 98-280 (292)
497 4ag6_A VIRB4 ATPase, type IV s 93.8 0.039 1.3E-06 49.6 3.6 26 77-102 34-59 (392)
498 2gno_A DNA polymerase III, gam 93.7 0.037 1.3E-06 48.8 3.3 25 78-102 18-42 (305)
499 1yqt_A RNAse L inhibitor; ATP- 93.7 0.039 1.3E-06 52.4 3.6 27 76-102 45-71 (538)
500 1ko7_A HPR kinase/phosphatase; 93.7 0.05 1.7E-06 48.6 4.0 31 77-108 143-173 (314)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=2.2e-32 Score=235.11 Aligned_cols=143 Identities=17% Similarity=0.335 Sum_probs=132.3
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccC
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~ 154 (233)
..++..|+|+|||||||+|+|++|+++||++|||++|+||+++..++++|+.++.++++|++|||+++.+++.++|.+..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~ 105 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLV 105 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred -CCCeEEE----------------------E-------------------------ecchHHHHHHHHHHHhccHHHHHH
Q 026804 155 -YRDNFIV----------------------T-------------------------NRGGSLKEKLEAYAELSKPLEDYY 186 (233)
Q Consensus 155 -~~~GfIL----------------------V-------------------------D~~e~i~~RL~~y~~~~~~l~~~Y 186 (233)
+..|||| | |++|++++|++.|.+++.||++||
T Consensus 106 ~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y 185 (217)
T 3umf_A 106 DKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHY 185 (217)
T ss_dssp TTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678998 1 578999999999999999999999
Q ss_pred HhcCcEEEEeCCCCHHHHHHHHHHHHhhccc
Q 026804 187 QKQKKLLEFQVGSAPVETWQGLLTALHLQHI 217 (233)
Q Consensus 187 ~~~~~l~~Ida~~~~~eV~~~I~~~L~~~~~ 217 (233)
+++++++.|||++++++||++|.+.|+..++
T Consensus 186 ~~~~~l~~Idg~~~~eeV~~~I~~~l~k~G~ 216 (217)
T 3umf_A 186 KQQNKVITIDASGTVDAIFDKVNHELQKFGV 216 (217)
T ss_dssp HTTTCEEEEETTSCHHHHHHHHHHHHHTTTC
T ss_pred HhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999987553
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.97 E-value=9.6e-32 Score=228.95 Aligned_cols=133 Identities=27% Similarity=0.440 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
|+|+|+|||||||+|+|++|+++||++|||+||+||+++..++++|+.++.++++|++|||+++.+++.+++.+. .|
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~---~~ 77 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKH---GN 77 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSS---SC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccC---Cc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999998753 46
Q ss_pred EEE--------------------------E---------------------------------------------ecchH
Q 026804 159 FIV--------------------------T---------------------------------------------NRGGS 167 (233)
Q Consensus 159 fIL--------------------------V---------------------------------------------D~~e~ 167 (233)
||| | |++|+
T Consensus 78 ~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~ 157 (206)
T 3sr0_A 78 VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEV 157 (206)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHH
T ss_pred eEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHH
Confidence 887 0 46789
Q ss_pred HHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 168 LKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 168 i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
+++|++.|++++.||++||+++++++.|||++++++||++|+++|..
T Consensus 158 i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 158 IKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp HHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999864
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.95 E-value=2.3e-28 Score=211.91 Aligned_cols=138 Identities=20% Similarity=0.388 Sum_probs=112.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~ 156 (233)
-.|++-|+|+|||||||+|++|+++||++||+++|++|+++..++++|+.+++++.+|+++|++++.+++.++|.+.++.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~ 86 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCA 86 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred CeEEE----------------------E----------------------------------------------------
Q 026804 157 DNFIV----------------------T---------------------------------------------------- 162 (233)
Q Consensus 157 ~GfIL----------------------V---------------------------------------------------- 162 (233)
+|||| |
T Consensus 87 ~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~D 166 (230)
T 3gmt_A 87 NGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDD 166 (230)
T ss_dssp TCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred CCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCC
Confidence 89998 0
Q ss_pred ecchHHHHHHHHHHHhccHHHHHHHhc-----------CcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 163 NRGGSLKEKLEAYAELSKPLEDYYQKQ-----------KKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 163 D~~e~i~~RL~~y~~~~~~l~~~Y~~~-----------~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
|++|++++||+.|.+++.||++||+++ ++++.|||++++++|+++|+++|..
T Consensus 167 D~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 167 DKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 568999999999999999999999973 7899999999999999999998754
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.92 E-value=2e-24 Score=186.50 Aligned_cols=138 Identities=19% Similarity=0.395 Sum_probs=126.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~ 155 (233)
.++++|+|+|+|||||||+|+.|++++|++||++++++|+.+..++++|+.+++++.+|..+|++++.+++.+++....+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 106 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQC 106 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred CCeEEE--------------------------E-----------------------------------------------
Q 026804 156 RDNFIV--------------------------T----------------------------------------------- 162 (233)
Q Consensus 156 ~~GfIL--------------------------V----------------------------------------------- 162 (233)
..+||+ |
T Consensus 107 ~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l 186 (243)
T 3tlx_A 107 KKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPL 186 (243)
T ss_dssp SSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred cCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccccc
Confidence 566666 0
Q ss_pred -----ecchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHh
Q 026804 163 -----NRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH 213 (233)
Q Consensus 163 -----D~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~ 213 (233)
|+++.+++|+..|.+++.++.+||.+++.++.||+++++++|+++|.++|+
T Consensus 187 ~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 187 IQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 246789999999999999999999999999999999999999999999885
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.90 E-value=7.7e-23 Score=171.60 Aligned_cols=136 Identities=19% Similarity=0.390 Sum_probs=122.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
|+|+|+|+|||||||+|+.|++++|+++|++++++++.+..+++.|+.+++++.+|..+|++++.+++.+++....+..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence 57999999999999999999999999999999999999889999999999999999999999999999999887555555
Q ss_pred EEE-----------------------------E-----------------------------------------------
Q 026804 159 FIV-----------------------------T----------------------------------------------- 162 (233)
Q Consensus 159 fIL-----------------------------V----------------------------------------------- 162 (233)
||+ +
T Consensus 81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3dl0_A 81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCC
Confidence 665 0
Q ss_pred --ecchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 163 --NRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 163 --D~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
|+++.+++|++.|.+++.++.+||.+.+.++.||+++++++|+++|.+.|+.
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 1347899999999999999999999988999999999999999999999863
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.89 E-value=2.7e-22 Score=167.97 Aligned_cols=136 Identities=19% Similarity=0.387 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
|+|+|+|+|||||||+|+.|++++|++++++++++++.+..+++.|+.+++++.+|..+|++++.+++.+++....+..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence 57999999999999999999999999999999999999888999999999999999999999999999999876544455
Q ss_pred EEE-----------------------------E-----------------------------------------------
Q 026804 159 FIV-----------------------------T----------------------------------------------- 162 (233)
Q Consensus 159 fIL-----------------------------V----------------------------------------------- 162 (233)
||+ +
T Consensus 81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r 160 (216)
T 3fb4_A 81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR 160 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence 555 0
Q ss_pred --ecchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 163 --NRGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 163 --D~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
|+++.+++|++.|.+++.++.+||.+.+.+++||+++++++|+++|.+.|+.
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 161 IDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 1246889999999999999999999988999999999999999999999863
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.88 E-value=4.1e-22 Score=168.35 Aligned_cols=137 Identities=18% Similarity=0.396 Sum_probs=116.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~ 155 (233)
.++++|+|+|+|||||||+|+.|++++|+++|++++++++....++++|+.+++++.+|+.+|++++.+++.+++....+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~ 82 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVC 82 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence 36789999999999999999999999999999999999988888888999999999999999999999999888876444
Q ss_pred CCeEEE-----------------------------E----------------e---------------------------
Q 026804 156 RDNFIV-----------------------------T----------------N--------------------------- 163 (233)
Q Consensus 156 ~~GfIL-----------------------------V----------------D--------------------------- 163 (233)
..|||+ + +
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l 162 (217)
T 3be4_A 83 VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPL 162 (217)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccccccc
Confidence 444444 0 1
Q ss_pred ------cchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHH
Q 026804 164 ------RGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTAL 212 (233)
Q Consensus 164 ------~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L 212 (233)
+.+.+++|+..|.++..|++++|++.+.++.||+++++++|+++|.+.|
T Consensus 163 ~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 163 VWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 1345678899999999999999998778999999999999999998753
No 8
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.87 E-value=1.1e-21 Score=165.50 Aligned_cols=138 Identities=22% Similarity=0.472 Sum_probs=117.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHH-ccC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLE-DGY 154 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~-~~~ 154 (233)
.++++|+|+|+|||||||+|+.|++++|+++|++++++++.+..++++|+.+++++.+|+.+|++.+..++.+++. ...
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999999999999999998888889999999999999999999999999988886 322
Q ss_pred CCCeEEE-----------------------------E----------------e--------------------------
Q 026804 155 YRDNFIV-----------------------------T----------------N-------------------------- 163 (233)
Q Consensus 155 ~~~GfIL-----------------------------V----------------D-------------------------- 163 (233)
+..+||+ + +
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~ 161 (220)
T 1aky_A 82 CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEA 161 (220)
T ss_dssp GGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred cCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccccccc
Confidence 2233333 1 1
Q ss_pred -------cchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHh
Q 026804 164 -------RGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALH 213 (233)
Q Consensus 164 -------~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~ 213 (233)
+++.+++|++.|.++..|+.++|++.+.++.||+++++++|+++|.+.|.
T Consensus 162 l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 162 LVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp CBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 02457789999999999999999877789999999999999999999885
No 9
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.87 E-value=1.4e-21 Score=166.78 Aligned_cols=140 Identities=26% Similarity=0.445 Sum_probs=120.4
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccC
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~ 154 (233)
+.++++|+|+|+|||||||+|+.|++++++++|++++++++.+..++++|+.+++++..|..++++++.+++.+++....
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 92 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP 92 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 45678999999999999999999999999999999999999877788999999999999999999999999988887654
Q ss_pred CCCeEEE-----------------------------E----------------e--------------------------
Q 026804 155 YRDNFIV-----------------------------T----------------N-------------------------- 163 (233)
Q Consensus 155 ~~~GfIL-----------------------------V----------------D-------------------------- 163 (233)
+.+|||+ + +
T Consensus 93 ~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 172 (233)
T 1ak2_A 93 CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEP 172 (233)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCB
T ss_pred ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccccc
Confidence 4445543 0 0
Q ss_pred -------cchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 164 -------RGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 164 -------~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
+.+.+++|++.|.++..|+.++|.+.+.++.||+++++++|+++|.+.|..
T Consensus 173 l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~ 230 (233)
T 1ak2_A 173 LIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK 230 (233)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 124678889899999999999999877899999999999999999999864
No 10
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.86 E-value=1.4e-21 Score=164.41 Aligned_cols=134 Identities=22% Similarity=0.456 Sum_probs=115.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
|+|+|+|+|||||||+|+.|++++|+++|++++++++.+..+++.|+.+++++.+|..+|++++.+++.+++.+..+..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 57999999999999999999999999999999999998777888899999999999999999999999888876433334
Q ss_pred EEE-------------------------E----------------e---------------------------------c
Q 026804 159 FIV-------------------------T----------------N---------------------------------R 164 (233)
Q Consensus 159 fIL-------------------------V----------------D---------------------------------~ 164 (233)
||+ + + +
T Consensus 81 ~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd~ 160 (214)
T 1e4v_A 81 FLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ 160 (214)
T ss_dssp EEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTCS
T ss_pred EEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCCC
Confidence 443 1 1 1
Q ss_pred chHHHHHHHHHHHhccHHHHHHHhc-----CcEEEEeCCCCHHHHHHHHHHHH
Q 026804 165 GGSLKEKLEAYAELSKPLEDYYQKQ-----KKLLEFQVGSAPVETWQGLLTAL 212 (233)
Q Consensus 165 ~e~i~~RL~~y~~~~~~l~~~Y~~~-----~~l~~Ida~~~~~eV~~~I~~~L 212 (233)
++.+++|++.|.+++.++.++|.+. +.++.|||++++++|+++|.+.|
T Consensus 161 ~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 161 EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 3578899999999999999999865 57999999999999999999887
No 11
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.84 E-value=2.7e-20 Score=158.13 Aligned_cols=133 Identities=17% Similarity=0.305 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDN 158 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~G 158 (233)
|+|+|+|+|||||||+|+.|++++|+++|++++++++.+..+++.|+.+++++.+|+.+|++++.+++.+++.... ..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~-g~~ 79 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG-KDG 79 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC-TTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc-CCe
Confidence 5799999999999999999999999999999999999888889999999999999999999999888888887511 111
Q ss_pred E----------------------------EE-E----------------e-c----------------------------
Q 026804 159 F----------------------------IV-T----------------N-R---------------------------- 164 (233)
Q Consensus 159 f----------------------------IL-V----------------D-~---------------------------- 164 (233)
| ++ + + +
T Consensus 80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~ 159 (223)
T 2xb4_A 80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALS 159 (223)
T ss_dssp EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEE
T ss_pred EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccccc
Confidence 1 22 1 1 1
Q ss_pred ------ch-HHHHHHHHHHHhccHHHH---HHHh-----cCcEEEEeCCCCHHHHHHHHHHHH
Q 026804 165 ------GG-SLKEKLEAYAELSKPLED---YYQK-----QKKLLEFQVGSAPVETWQGLLTAL 212 (233)
Q Consensus 165 ------~e-~i~~RL~~y~~~~~~l~~---~Y~~-----~~~l~~Ida~~~~~eV~~~I~~~L 212 (233)
.+ .+++|+..|.+++.|+.+ +|.+ .+.++.|||++++++|+++|.+.|
T Consensus 160 ~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 160 ARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp CCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 45 889999999999999999 9986 567999999999999999999887
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.83 E-value=5.3e-20 Score=155.99 Aligned_cols=138 Identities=17% Similarity=0.370 Sum_probs=116.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY 155 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~ 155 (233)
.++++|+|+|+|||||||+|+.|++++|+++|++++++++....++++|+.+++++.+|..+|++....++.+++.+. .
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-~ 83 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-T 83 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-T
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-c
Confidence 356899999999999999999999999999999999999887778889999999999999999998888888888742 2
Q ss_pred CCeEEE------------------------E----------------e--------------------------------
Q 026804 156 RDNFIV------------------------T----------------N-------------------------------- 163 (233)
Q Consensus 156 ~~GfIL------------------------V----------------D-------------------------------- 163 (233)
..+||+ + +
T Consensus 84 ~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~~ 163 (227)
T 1zd8_A 84 QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRED 163 (227)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred CCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCCC
Confidence 233444 0 1
Q ss_pred -cchHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhhc
Q 026804 164 -RGGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 164 -~~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~~ 215 (233)
+.+.+++|+..|.+...++.++|++.+.++.||++ ++++|+++|.+.|...
T Consensus 164 ~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~ 215 (227)
T 1zd8_A 164 DKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTK 215 (227)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhh
Confidence 12567889999999999999999977789999999 9999999999999754
No 13
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.82 E-value=2e-19 Score=149.38 Aligned_cols=137 Identities=23% Similarity=0.397 Sum_probs=110.2
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccC
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY 154 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~ 154 (233)
+.++++|+|+|+|||||||+|+.|++++|+++|++++++++.+..+++.|+.+++++.+|+.+|++....++.+++....
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 96 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPD 96 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhccc
Confidence 45778999999999999999999999999999999999998777788899999999999999999888888887775422
Q ss_pred CCCeEEE-----------------------------E------------------ecchHHHHHHHHHHHhccHHHHHHH
Q 026804 155 YRDNFIV-----------------------------T------------------NRGGSLKEKLEAYAELSKPLEDYYQ 187 (233)
Q Consensus 155 ~~~GfIL-----------------------------V------------------D~~e~i~~RL~~y~~~~~~l~~~Y~ 187 (233)
+.+++|+ + ++++.+++|+..|.++..++.++|.
T Consensus 97 ~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~~~~ 176 (201)
T 2cdn_A 97 AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYR 176 (201)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHTT
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHHHhc
Confidence 2233333 1 2345566666667666777777773
Q ss_pred hcCcEEEEeCCCCHHHHHHHHHHHHh
Q 026804 188 KQKKLLEFQVGSAPVETWQGLLTALH 213 (233)
Q Consensus 188 ~~~~l~~Ida~~~~~eV~~~I~~~L~ 213 (233)
..++.||+++++++|+++|.+.|+
T Consensus 177 --~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 177 --DQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp --TTEEEEECCSCHHHHHHHHHHHTT
T ss_pred --CcEEEEeCCCCHHHHHHHHHHHHc
Confidence 368899999999999999998774
No 14
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.81 E-value=5.4e-19 Score=144.82 Aligned_cols=139 Identities=16% Similarity=0.342 Sum_probs=110.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccC-
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY- 154 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~- 154 (233)
.+++.|+|+|+|||||||+|+.|++++|+++++++++++.....+++.|+.+++++.+|+.++++...+++.+.+....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence 3567999999999999999999999999999999999998777778899999999999999998888877777665421
Q ss_pred CCCeEEE-------------------------E----------------------ecchHHHHHHHHHHHhccHHHHHHH
Q 026804 155 YRDNFIV-------------------------T----------------------NRGGSLKEKLEAYAELSKPLEDYYQ 187 (233)
Q Consensus 155 ~~~GfIL-------------------------V----------------------D~~e~i~~RL~~y~~~~~~l~~~Y~ 187 (233)
...++|+ + ++++.+.+|+..|.++..++.++|+
T Consensus 87 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 166 (196)
T 2c95_A 87 TSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYE 166 (196)
T ss_dssp TCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122332 1 1234556666666667777777887
Q ss_pred hcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 188 KQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 188 ~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
..+.++.||+++++++++++|.+.++.
T Consensus 167 ~~~~~~~Id~~~~~e~v~~~i~~~l~~ 193 (196)
T 2c95_A 167 KRGIVRKVNAEGSVDSVFSQVCTHLDA 193 (196)
T ss_dssp HHTCEEEEECCSCHHHHHHHHHHHHHH
T ss_pred hcCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 766788999999999999999999864
No 15
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.80 E-value=1.4e-18 Score=141.66 Aligned_cols=138 Identities=17% Similarity=0.377 Sum_probs=108.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC-CCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHcc--
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG-- 153 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i-~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~-- 153 (233)
+++.|+|+|+|||||||+|+.|++++|+++|++++++++.. ..++.+++.+++++.+|..+++++...++.+.+...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 56789999999999999999999999999999999998764 345678888999999999999887776665554321
Q ss_pred --CCCCeEEE----------------------------E----------------------ecchHHHHHHHHHHHhccH
Q 026804 154 --YYRDNFIV----------------------------T----------------------NRGGSLKEKLEAYAELSKP 181 (233)
Q Consensus 154 --~~~~GfIL----------------------------V----------------------D~~e~i~~RL~~y~~~~~~ 181 (233)
....++|+ + ++.+.+.+|+..|.+...|
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~ 161 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP 161 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence 11112222 1 1345667788888888889
Q ss_pred HHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 182 LEDYYQKQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 182 l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
+.++|.+.+.++.||+++++++|+++|.+.+..
T Consensus 162 ~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 162 IIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 999998877788999999999999999999865
No 16
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.80 E-value=8.1e-19 Score=143.09 Aligned_cols=137 Identities=25% Similarity=0.431 Sum_probs=108.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHcc---
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG--- 153 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~--- 153 (233)
+++.|+|+|+|||||||+|+.|++++|++++++++++++.+..+++.|+.+++++.+|..++++.+.+++.+.+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~i~ 82 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAERVIF 82 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcCCEEE
Confidence 67899999999999999999999999999999999999877778889999999999999999888887777654321
Q ss_pred --CC--------------C----CeEEE-E----------------------ecchHHHHHHHHHHHhccHHHHHHHhcC
Q 026804 154 --YY--------------R----DNFIV-T----------------------NRGGSLKEKLEAYAELSKPLEDYYQKQK 190 (233)
Q Consensus 154 --~~--------------~----~GfIL-V----------------------D~~e~i~~RL~~y~~~~~~l~~~Y~~~~ 190 (233)
.. . ...++ + ++++.+.+|+..|.++..|+.++|.+.+
T Consensus 83 dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~ 162 (186)
T 3cm0_A 83 DGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARG 162 (186)
T ss_dssp ESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 0 11222 1 1234566667767666778888888766
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHh
Q 026804 191 KLLEFQVGSAPVETWQGLLTALH 213 (233)
Q Consensus 191 ~l~~Ida~~~~~eV~~~I~~~L~ 213 (233)
.++.||+++++++|+++|.+.++
T Consensus 163 ~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 163 VLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCHHHHHHHHHHHhc
Confidence 78999999999999999998874
No 17
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.79 E-value=2.8e-19 Score=150.85 Aligned_cols=137 Identities=16% Similarity=0.300 Sum_probs=111.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCC-
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYY- 155 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~- 155 (233)
++++|+|+|+|||||||+|+.|++++++++++++++++.....+++.|+.+++++.+|+.+|++....++.+++....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ 83 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcccc
Confidence 5678999999999999999999999999999999999987777888999999999999999999888878777653211
Q ss_pred CCeEEE-------------------------E----------------e-----------------------------cc
Q 026804 156 RDNFIV-------------------------T----------------N-----------------------------RG 165 (233)
Q Consensus 156 ~~GfIL-------------------------V----------------D-----------------------------~~ 165 (233)
.+|||+ + + ..
T Consensus 84 ~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~ 163 (222)
T 1zak_A 84 ENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTE 163 (222)
T ss_dssp HTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCT
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCCH
Confidence 122322 1 1 13
Q ss_pred hHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhhc
Q 026804 166 GSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 166 e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~~ 215 (233)
+.+++|++.|.++..++.++|++ .++.||+++++++|+++|.+.|...
T Consensus 164 ~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~ 211 (222)
T 1zak_A 164 EKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSI 211 (222)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhh
Confidence 55777888888888888888865 4889999999999999999999753
No 18
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.79 E-value=2.2e-18 Score=142.83 Aligned_cols=141 Identities=19% Similarity=0.370 Sum_probs=110.5
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC-CCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHc
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL-SPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLED 152 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i-~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~ 152 (233)
.+.+++.|+|+|+|||||||+|+.|++++|+++|++++++++.. ..++.+++.++.++.+|+..|+++...++.+.+..
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~ 90 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISD 90 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHh
Confidence 35577899999999999999999999999999999999998753 35777889999999999999988877777666543
Q ss_pred cC--CCCeEEE-------------------------E----------------------ecchHHHHHHHHHHHhccHHH
Q 026804 153 GY--YRDNFIV-------------------------T----------------------NRGGSLKEKLEAYAELSKPLE 183 (233)
Q Consensus 153 ~~--~~~GfIL-------------------------V----------------------D~~e~i~~RL~~y~~~~~~l~ 183 (233)
.. ...+||+ + |+.+.+++|+..|.+...|+.
T Consensus 91 ~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~ 170 (203)
T 1ukz_A 91 NVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVI 170 (203)
T ss_dssp HHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHH
T ss_pred hhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHH
Confidence 11 1134443 1 124455666666666677888
Q ss_pred HHHHhcCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 184 DYYQKQKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 184 ~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
++|...+.++.||+++++++|+++|.+.+..
T Consensus 171 ~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 171 EYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 8887777788999999999999999998864
No 19
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.79 E-value=4.5e-18 Score=138.35 Aligned_cols=138 Identities=17% Similarity=0.247 Sum_probs=110.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYR 156 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~ 156 (233)
.++.|+|+|+|||||||+|+.|++++|+++|++++++++....+++.++.+++++.+|...++++...++.+.+... ..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~-~~ 83 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN-QG 83 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS-TT
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc-CC
Confidence 34689999999999999999999999999999999999877677888999999999999988888887777766532 11
Q ss_pred CeE---------------------------EE-E----------------------ecchHHHHHHHHHHHhccHHHHHH
Q 026804 157 DNF---------------------------IV-T----------------------NRGGSLKEKLEAYAELSKPLEDYY 186 (233)
Q Consensus 157 ~Gf---------------------------IL-V----------------------D~~e~i~~RL~~y~~~~~~l~~~Y 186 (233)
.++ ++ + ++.+.+.+|++.|.++..++.++|
T Consensus 84 ~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~ 163 (194)
T 1qf9_A 84 KNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHY 163 (194)
T ss_dssp CCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 112 21 1 113566677777777777888888
Q ss_pred HhcCcEEEEeCCCCHHHHHHHHHHHHhhc
Q 026804 187 QKQKKLLEFQVGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 187 ~~~~~l~~Ida~~~~~eV~~~I~~~L~~~ 215 (233)
...+.++.||+++++++++++|.+.++..
T Consensus 164 ~~~~~~~~id~~~~~~~~~~~i~~~l~~~ 192 (194)
T 1qf9_A 164 NKFDKVKIIPANRDVNEVYNDVENLFKSM 192 (194)
T ss_dssp HHTTCEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred HhCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 87777889999999999999999998753
No 20
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=142.76 Aligned_cols=138 Identities=23% Similarity=0.408 Sum_probs=109.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHccC-C
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGY-Y 155 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~-~ 155 (233)
+++.|+|+|+|||||||+|+.|++++|+++++++++++.....+++.|+.+++++.+|..++++.+..++.+.+.... .
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence 356899999999999999999999999999999999988766678889999999999999998888887777665421 1
Q ss_pred CCeEEE-------------------------E--------------e--------cchHHHHHHHHHHHhccHHHHHHHh
Q 026804 156 RDNFIV-------------------------T--------------N--------RGGSLKEKLEAYAELSKPLEDYYQK 188 (233)
Q Consensus 156 ~~GfIL-------------------------V--------------D--------~~e~i~~RL~~y~~~~~~l~~~Y~~ 188 (233)
..++|+ + + +.+.+.+|+..|.+...++.++|.+
T Consensus 91 ~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 170 (199)
T 2bwj_A 91 TRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYET 170 (199)
T ss_dssp CSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122222 1 1 1245667777777777788888887
Q ss_pred cCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 189 QKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 189 ~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
.+.++.||+++++++++++|.+.++.
T Consensus 171 ~~~~~~id~~~~~e~v~~~i~~~l~~ 196 (199)
T 2bwj_A 171 KTQLHKINAEGTPEDVFLQLCTAIDS 196 (199)
T ss_dssp HSEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 66678999999999999999998864
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.66 E-value=2.3e-15 Score=128.93 Aligned_cols=138 Identities=14% Similarity=0.356 Sum_probs=107.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHHHHHHcc---
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDG--- 153 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~--- 153 (233)
++.+|+|+|||||||||+++.|++++|+.+++.|+++++....+++.+..++.++++|..+|+..+.+.+...+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 45799999999999999999999999999999999988755445677888888888888888776666655444210
Q ss_pred ------C-------------CCCeEEE-E------------------------------------e-------------c
Q 026804 154 ------Y-------------YRDNFIV-T------------------------------------N-------------R 164 (233)
Q Consensus 154 ------~-------------~~~GfIL-V------------------------------------D-------------~ 164 (233)
. ..-+.++ + | +
T Consensus 106 ~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~~~ 185 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDK 185 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGGGS
T ss_pred eEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCCCc
Confidence 0 0111111 0 1 1
Q ss_pred chHHHHHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHhhc
Q 026804 165 GGSLKEKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 165 ~e~i~~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~~ 215 (233)
.+.+.+++..|.++..++.++|.+.+.++.||++++ ++|+++|.+.|...
T Consensus 186 ~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~ 235 (246)
T 2bbw_A 186 PEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNK 235 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhh
Confidence 246788899999889999999998888999999988 99999999999764
No 22
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.35 E-value=2.7e-11 Score=98.28 Aligned_cols=130 Identities=13% Similarity=0.100 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHH-----------HH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDII-----------FG 144 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~---gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~-----------~~ 144 (233)
+.|+|+|+|||||||+|+.|++++ |++++++++ ..++.+|+.+++++.+|+..++... .+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999998 999998753 1234455555555544543332111 01
Q ss_pred HHHHHHHc-------------------------------------cCCCCeEEEEe-cchHHHHHHHHH-----HHhccH
Q 026804 145 LLSKRLED-------------------------------------GYYRDNFIVTN-RGGSLKEKLEAY-----AELSKP 181 (233)
Q Consensus 145 li~~rL~~-------------------------------------~~~~~GfILVD-~~e~i~~RL~~y-----~~~~~~ 181 (233)
++...+.+ .....-.|+|+ ++++..+|+... .+..+.
T Consensus 75 ~i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~~~~~~ 154 (195)
T 2pbr_A 75 KIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENKEFLEK 154 (195)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCHHHHHH
T ss_pred HHHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchHHHHHH
Confidence 11111111 00011233344 456777777531 011112
Q ss_pred HHHHHHhc----CcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 182 LEDYYQKQ----KKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 182 l~~~Y~~~----~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
+.+.|.+. +.++.||+++++++++++|.+.++.
T Consensus 155 ~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~ 191 (195)
T 2pbr_A 155 VRKGFLELAKEEENVVVIDASGEEEEVFKEILRALSG 191 (195)
T ss_dssp HHHHHHHHHHHSTTEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 22334322 4689999999999999999999864
No 23
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.32 E-value=2e-11 Score=96.55 Aligned_cols=38 Identities=29% Similarity=0.347 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i 117 (233)
+.|+|.|+|||||||+|+.| +++|++++++++++++..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~ 39 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRY 39 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHH
Confidence 58999999999999999999 999999999999998754
No 24
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=1.5e-11 Score=101.88 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
++..|+|+|+|||||||+++.|++++|++++++++++++.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~ 63 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEER 63 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHH
Confidence 4568999999999999999999999999999999987654
No 25
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.29 E-value=3.4e-11 Score=99.53 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=84.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC----CCC---C-----hHHHHHHHHHhcCCcc-chH-HH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL----SPR---S-----SLHKQIANAVNRGEVV-SED-II 142 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i----~~~---s-----~lg~~i~~~l~~G~~v-pde-i~ 142 (233)
++++|+|+|+|||||||+|+.|++.+|+++|+.+++..... ..+ . ..-..+.+.+..|..+ -|. ..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~vivd~~~~ 96 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSCSAL 96 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSSSCCEEECCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHHhcCCCEEEECCCC
Confidence 35689999999999999999999999999999887752210 000 0 0112333444455432 110 01
Q ss_pred HHHHHHHHHccCCC-CeEEEEe-cchHHHHHHHHHHHhcc---HHHHHHHh------cCcEEEEeCCCCHHHHHHHHHHH
Q 026804 143 FGLLSKRLEDGYYR-DNFIVTN-RGGSLKEKLEAYAELSK---PLEDYYQK------QKKLLEFQVGSAPVETWQGLLTA 211 (233)
Q Consensus 143 ~~li~~rL~~~~~~-~GfILVD-~~e~i~~RL~~y~~~~~---~l~~~Y~~------~~~l~~Ida~~~~~eV~~~I~~~ 211 (233)
.....+.+...... .-+|+++ +++++.+|+........ -+...+.. ....+.||++.+++++.++|.+.
T Consensus 97 ~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~e~~~~I~~~ 176 (202)
T 3t61_A 97 KRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETLEDPRGEVRTVAVDVAQPLAEIVREALAG 176 (202)
T ss_dssp SHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHCCCCTTSTTEEEEESSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhcCCCCCCCCeEEEeCCCCHHHHHHHHHHH
Confidence 11222233322211 1233344 56788888876543211 12222221 12478999999999999999999
Q ss_pred HhhccccC
Q 026804 212 LHLQHINA 219 (233)
Q Consensus 212 L~~~~~~~ 219 (233)
|...++..
T Consensus 177 l~~~~~~~ 184 (202)
T 3t61_A 177 LARLAENL 184 (202)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhcc
Confidence 98776443
No 26
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.28 E-value=3.3e-11 Score=96.66 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHh-cCCccchHHHHHHHHHHHHccCC--
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLEDGYY-- 155 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~-~G~~vpdei~~~li~~rL~~~~~-- 155 (233)
-.|+|+|+|||||||+|+.|++++|++++++++++++.. |..+++++. .|+.+..++..+++.+......+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~V 81 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV------GLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHV 81 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh------CCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 478999999999999999999999999999999887643 222333332 24444434333333332211111
Q ss_pred --------------CCeEEE-Ee-cchHHHHHHHHH----HHh---ccHHH-------HHHHhcCcEEEEeCCCCHHHHH
Q 026804 156 --------------RDNFIV-TN-RGGSLKEKLEAY----AEL---SKPLE-------DYYQKQKKLLEFQVGSAPVETW 205 (233)
Q Consensus 156 --------------~~GfIL-VD-~~e~i~~RL~~y----~~~---~~~l~-------~~Y~~~~~l~~Ida~~~~~eV~ 205 (233)
..++++ |+ +++...+|+... +.. .+.+. ++|.+.. -+.||++++++++.
T Consensus 82 i~~g~g~~~~~~l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~~~~a-~~~Id~~~~~e~~~ 160 (168)
T 1zuh_A 82 ISTGGGIVMHENLKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKNA-SFIIDARGGLNNSL 160 (168)
T ss_dssp EECCGGGGGCGGGTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHHHHTC-SEEEEGGGCHHHHH
T ss_pred EECCCCEechhHHhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHHHHHC-CEEEECCCCHHHHH
Confidence 123333 43 566677776422 010 11222 2344322 35788878999999
Q ss_pred HHHHHHH
Q 026804 206 QGLLTAL 212 (233)
Q Consensus 206 ~~I~~~L 212 (233)
++|.+.|
T Consensus 161 ~~I~~~l 167 (168)
T 1zuh_A 161 KQVLQFI 167 (168)
T ss_dssp HHHHHC-
T ss_pred HHHHHHh
Confidence 9998765
No 27
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.26 E-value=3.2e-10 Score=96.84 Aligned_cols=134 Identities=10% Similarity=0.054 Sum_probs=83.3
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhC--CCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHH-HHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIF-GLLSKRLE 151 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~g--l~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~-~li~~rL~ 151 (233)
..+++.|+|.|+|||||||+++.|++.++ ..++.+ ....+++.|+.+++++.+|..+.+.... -...+|..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~ 96 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE 96 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999999997 454443 2345677888888888877753332221 11222332
Q ss_pred ccC-------CCCeEEE-----------------------------------------Ee-cchHHHHHHHHHH------
Q 026804 152 DGY-------YRDNFIV-----------------------------------------TN-RGGSLKEKLEAYA------ 176 (233)
Q Consensus 152 ~~~-------~~~GfIL-----------------------------------------VD-~~e~i~~RL~~y~------ 176 (233)
... ..+.+|+ +| +++.+.+|+....
T Consensus 97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~ 176 (229)
T 4eaq_A 97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRL 176 (229)
T ss_dssp HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccch
Confidence 110 0111222 23 4677778876531
Q ss_pred -----HhccHHHHHHHhc-----CcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 177 -----ELSKPLEDYYQKQ-----KKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 177 -----~~~~~l~~~Y~~~-----~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
+..+.+.+.|.+. +.+++||+++++++|.++|.+.|..
T Consensus 177 e~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~ 224 (229)
T 4eaq_A 177 DQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIK 224 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 1122344555321 3589999999999999999999864
No 28
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.25 E-value=1.2e-11 Score=102.15 Aligned_cols=138 Identities=13% Similarity=0.214 Sum_probs=80.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHH---------
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLL--------- 146 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li--------- 146 (233)
.+++.|+|+|+|||||||+|+.|+++++.+++++ +++++. ..+++.|+.+++++.++..+++.....+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN 85 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999998887776 445432 23455566665555544433322111111
Q ss_pred --HH------------------------------HHH---ccCCC-CeEEEEe-cchHHHHHHHH----HH--HhccHHH
Q 026804 147 --SK------------------------------RLE---DGYYR-DNFIVTN-RGGSLKEKLEA----YA--ELSKPLE 183 (233)
Q Consensus 147 --~~------------------------------rL~---~~~~~-~GfILVD-~~e~i~~RL~~----y~--~~~~~l~ 183 (233)
.. .+. ..... ...|+++ +++++.+|+.. +. +....+.
T Consensus 86 ~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~~~~~~~~~ 165 (212)
T 2wwf_A 86 EIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIY 165 (212)
T ss_dssp HHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCSHHHHHHHH
T ss_pred HHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccHHHHHHHHH
Confidence 01 110 00001 1223343 34555566532 10 1112233
Q ss_pred HHHHh---cCcEEEEeCCCCHHHHHHHHHHHHhhc
Q 026804 184 DYYQK---QKKLLEFQVGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 184 ~~Y~~---~~~l~~Ida~~~~~eV~~~I~~~L~~~ 215 (233)
+.|.+ ...+++||++++++++.++|.+.++..
T Consensus 166 ~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 166 ETYKHFAHEDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp HHGGGGTTCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred HHHHHHhccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 44543 235889999999999999999999754
No 29
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.25 E-value=4.4e-11 Score=97.04 Aligned_cols=39 Identities=18% Similarity=0.072 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
+..|+|+|+|||||||+|+.|++++|+++++.++++++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~ 43 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKR 43 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHH
Confidence 458999999999999999999999999999999887764
No 30
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.24 E-value=1.2e-11 Score=100.43 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i 117 (233)
++|+|+|+|||||||+|+.|++++|+++|++++++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~ 41 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT 41 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc
Confidence 469999999999999999999999999999999887653
No 31
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.23 E-value=2.1e-10 Score=91.20 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCcc-chHH-HHHHH----------
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVV-SEDI-IFGLL---------- 146 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~v-pdei-~~~li---------- 146 (233)
+.|+|+|+|||||||+|+.|++++|+++++.+++...... ...+- .....+.+|..+ .|.. ...++
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~-~~~~~-~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~~ 79 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG-NEKLF-EHFNKLADEDNVIIDRFVYSNLVYAKKFKDYSI 79 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC-HHHHH-HHHHHHTTCCSEEEESCHHHHHHHTTTBTTCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH-HHHHH-HHHHHHHhCCCeEEeeeecchHHHHHHHHHhhH
Confidence 4789999999999999999999999999998876654320 00110 112234445433 2211 11111
Q ss_pred -----HHHHHccCCCCe-EEEEe-cchHHHHHHHHHHH------hccHHHHHHHh-----cCcEEEEeCC-CCHHHHHHH
Q 026804 147 -----SKRLEDGYYRDN-FIVTN-RGGSLKEKLEAYAE------LSKPLEDYYQK-----QKKLLEFQVG-SAPVETWQG 207 (233)
Q Consensus 147 -----~~rL~~~~~~~G-fILVD-~~e~i~~RL~~y~~------~~~~l~~~Y~~-----~~~l~~Ida~-~~~~eV~~~ 207 (233)
.+.+........ +|+++ +++++.+|+..... ....+.+.|.+ ....++||++ .++++|.++
T Consensus 80 ~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~ev~~~ 159 (173)
T 3kb2_A 80 LTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTYSWDTGQWSSDEIAKD 159 (173)
T ss_dssp CCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSSCEEEEETTTSCHHHHHHH
T ss_pred hhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHH
Confidence 111211111222 33344 57788888865311 11223333332 1257899998 599999999
Q ss_pred HHHHHhhcc
Q 026804 208 LLTALHLQH 216 (233)
Q Consensus 208 I~~~L~~~~ 216 (233)
|.+.++...
T Consensus 160 I~~~~~~~~ 168 (173)
T 3kb2_A 160 IIFLVELEH 168 (173)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHhCCC
Confidence 999998754
No 32
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.22 E-value=2.3e-10 Score=93.19 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=41.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS 138 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~---gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vp 138 (233)
|.|+|.|+|||||||+++.|++++ |++++.+.+ ..+++.|+.+++++..|...|
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~ 57 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTP 57 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCH
Confidence 478999999999999999999999 999987643 345667777777766655544
No 33
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.22 E-value=4.7e-11 Score=95.28 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
|+|+|.|+|||||||+|+.|++++|+++++++++.++.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~ 38 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKR 38 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHH
Confidence 57999999999999999999999999999999887664
No 34
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.19 E-value=1.2e-10 Score=94.06 Aligned_cols=140 Identities=12% Similarity=-0.014 Sum_probs=74.3
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec----chhHhhcCCCCC-------h----HHHHHHHHHhc-CCccc
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM----SSIVRQDLSPRS-------S----LHKQIANAVNR-GEVVS 138 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~----~dllr~~i~~~s-------~----lg~~i~~~l~~-G~~vp 138 (233)
|++++.|+|+|+|||||||+|+.|++++|.+++.. ++.+++.+..+. . ....++..+.. |..+-
T Consensus 2 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~~g~~vi 81 (183)
T 2vli_A 2 PMRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREAAGPLI 81 (183)
T ss_dssp ---CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHHCSSCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHhCCCcEE
Confidence 45778999999999999999999999999999832 334454333111 0 12344555655 54331
Q ss_pred -hHH-----HHHHHHHHHHccCCCCeEEEEe-cchHHHHHHHHHHH---hccHHHHHHHhc----CcEEEEeCC-CCHHH
Q 026804 139 -EDI-----IFGLLSKRLEDGYYRDNFIVTN-RGGSLKEKLEAYAE---LSKPLEDYYQKQ----KKLLEFQVG-SAPVE 203 (233)
Q Consensus 139 -dei-----~~~li~~rL~~~~~~~GfILVD-~~e~i~~RL~~y~~---~~~~l~~~Y~~~----~~l~~Ida~-~~~~e 203 (233)
|.. ...-+.+.+......--+|+++ +++.+.+|+..... ....+..+|... ... +||++ .++++
T Consensus 82 ~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~~~~~~~~~~~~~~~~~-~Id~~~~~~~~ 160 (183)
T 2vli_A 82 VPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVNVGTVEDRLNELRGEQFQT-HIDTAGLGTQQ 160 (183)
T ss_dssp EEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CCHHHHHHHHHHHTSGGGCS-EEECTTCCHHH
T ss_pred EeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchhHHHHHHHHHhhcccccce-EeeCCCCCHHH
Confidence 110 1112223343321111224444 46777778754211 011222233211 123 89987 89999
Q ss_pred HHHHHHHHHhhc
Q 026804 204 TWQGLLTALHLQ 215 (233)
Q Consensus 204 V~~~I~~~L~~~ 215 (233)
+.++|.+.+...
T Consensus 161 ~~~~I~~~l~~~ 172 (183)
T 2vli_A 161 VAEQIAAQVGLT 172 (183)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHh
Confidence 999999999654
No 35
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.19 E-value=1.1e-10 Score=96.42 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
+++.|+|+|+|||||||+++.|+++++..++++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 578999999999999999999999987655544
No 36
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.18 E-value=1.4e-10 Score=99.75 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=43.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh-------CCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-------EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSED 140 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~-------gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpde 140 (233)
.+++.|+|.|++||||||+++.|++++ |+.++.+ |+ ..++++|+.+++++.+|...|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~ 88 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLET 88 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHH
Confidence 478899999999999999999999998 4444432 33 35788999999998888655543
No 37
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.18 E-value=5.4e-10 Score=94.87 Aligned_cols=133 Identities=14% Similarity=0.172 Sum_probs=83.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC---CCEEecchhHhhcCCCCChHHHHHHHHHhcCC--ccchHHH-HHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQDLSPRSSLHKQIANAVNRGE--VVSEDII-FGLLSKR 149 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g---l~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~--~vpdei~-~~li~~r 149 (233)
++++.|+|.|++||||||+++.|+++++ +.++.+ ++ ..++++|+.+++++.+|. .+.+... .-...+|
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~----~~--p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R 77 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT----RE--PGGTPLAERIRELLLAPSDEPMAADTELLLMFAAR 77 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE----ES--SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc----cC--CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999999984 555544 22 357889999999888774 2322211 1111222
Q ss_pred HHc-------cCCCCeEEE-----------------------------------------Ee-cchHHHHHHHH------
Q 026804 150 LED-------GYYRDNFIV-----------------------------------------TN-RGGSLKEKLEA------ 174 (233)
Q Consensus 150 L~~-------~~~~~GfIL-----------------------------------------VD-~~e~i~~RL~~------ 174 (233)
.++ .-..+.+|+ +| ++++..+|+..
T Consensus 78 ~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr 157 (213)
T 4edh_A 78 AQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDR 157 (213)
T ss_dssp HHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCT
T ss_pred HHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCc
Confidence 221 000122333 13 46677777643
Q ss_pred HHH----hccHHHHHHHh-----cCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 175 YAE----LSKPLEDYYQK-----QKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 175 y~~----~~~~l~~~Y~~-----~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
|+. ..+.+.+.|.+ ...+++||+++++++|.++|.+.|..
T Consensus 158 ~E~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~ 206 (213)
T 4edh_A 158 FEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPN 206 (213)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHH
Confidence 211 11233444431 13599999999999999999999864
No 38
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.17 E-value=7.1e-11 Score=94.51 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
+.|+|+|+|||||||+|+.|++++|+++++.++++++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~ 40 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT 40 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH
Confidence 47999999999999999999999999999999888764
No 39
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.17 E-value=8.8e-11 Score=94.88 Aligned_cols=129 Identities=14% Similarity=0.143 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHH-hcCCccchHHHHHHHHHHHHcc-C--
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAV-NRGEVVSEDIIFGLLSKRLEDG-Y-- 154 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l-~~G~~vpdei~~~li~~rL~~~-~-- 154 (233)
++|+|+|+|||||||+|+.|++++|+++++.++++++.. |..+.+++ ..|...+.++...++.. +... .
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~~~~-l~~~~~~v 77 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF------NQKVSEIFEQKRENFFREQEQKMADF-FSSCEKAC 77 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH------TSCHHHHHHHHCHHHHHHHHHHHHHH-HTTCCSEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc------CCCHHHHHHHcCHHHHHHHHHHHHHH-HHccCCEE
Confidence 379999999999999999999999999999998887542 11122222 23443333333334332 3211 0
Q ss_pred --CC-----------CeE-EEEe-cchHHHHHHHH--------------HHHhccHHHHHHHhcCcEEEEeCC-CCHHHH
Q 026804 155 --YR-----------DNF-IVTN-RGGSLKEKLEA--------------YAELSKPLEDYYQKQKKLLEFQVG-SAPVET 204 (233)
Q Consensus 155 --~~-----------~Gf-ILVD-~~e~i~~RL~~--------------y~~~~~~l~~~Y~~~~~l~~Ida~-~~~~eV 204 (233)
+. .++ |+++ +++.+.+|+.. ..+......++|.+.. .+.||++ .+++++
T Consensus 78 i~~g~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y~~~~-~~~Idt~~~~~eev 156 (175)
T 1via_A 78 IATGGGFVNVSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKA-NFILNIENKNIDEL 156 (175)
T ss_dssp EECCTTGGGSTTGGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHHHC-SEEEECTTCCHHHH
T ss_pred EECCCCEehhhHHhcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHhcC-CEEEECCCCCHHHH
Confidence 11 122 2232 34444444321 1111222234554422 4789998 799999
Q ss_pred HHHHHHHHhhc
Q 026804 205 WQGLLTALHLQ 215 (233)
Q Consensus 205 ~~~I~~~L~~~ 215 (233)
.+.|.+.+...
T Consensus 157 ~~~I~~~l~~~ 167 (175)
T 1via_A 157 LSEIKKVIKEG 167 (175)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhc
Confidence 99999998654
No 40
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.16 E-value=1.6e-10 Score=99.82 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=42.0
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHh
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN 132 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~ 132 (233)
++++++.|+|.|++||||||+++.|+++++...+++..++++ ..++++|+.+++++.
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~ 79 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVK 79 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHh
Confidence 456788999999999999999999999985444442233443 357888888888875
No 41
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.15 E-value=3.3e-11 Score=100.72 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~ 115 (233)
+++|.|+|+|||||||+++.|++.+|+++++.|+++++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~ 42 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV 42 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeeh
Confidence 46899999999999999999999999999999999984
No 42
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.15 E-value=1.1e-09 Score=89.68 Aligned_cols=53 Identities=15% Similarity=0.104 Sum_probs=38.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-CCCEEecchhHhhcCCCCChHHHHHHHHHhcC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQDLSPRSSLHKQIANAVNRG 134 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~-gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G 134 (233)
+++.|+|+|+|||||||+++.|++++ |++++++.+.. .++..|+.+++++.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~ 56 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRK 56 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcC
Confidence 57899999999999999999999999 68888764321 1334455555554443
No 43
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.14 E-value=1.2e-09 Score=92.12 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh--CCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHH-HHHHHHc---
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGL-LSKRLED--- 152 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~--gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~l-i~~rL~~--- 152 (233)
..|+|.|+.||||||+++.|++++ |.+++.+. ...+++.|+.+++++.++..++.....-+ ..+|.++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~------eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~ 76 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVL 76 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE------SSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee------CCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999998 55555432 14577888888888877766554332211 1111111
Q ss_pred ----cCCCCeEEE-----------------------------------------Ee-cchHHHHHHHHHH-------H--
Q 026804 153 ----GYYRDNFIV-----------------------------------------TN-RGGSLKEKLEAYA-------E-- 177 (233)
Q Consensus 153 ----~~~~~GfIL-----------------------------------------VD-~~e~i~~RL~~y~-------~-- 177 (233)
.-..+.+|+ +| ++++..+|+.... .
T Consensus 77 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~ 156 (205)
T 4hlc_A 77 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQED 156 (205)
T ss_dssp THHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHH
T ss_pred HHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccC
Confidence 001223444 13 4677777764221 1
Q ss_pred --hccHHHHHHHh-----cCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 178 --LSKPLEDYYQK-----QKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 178 --~~~~l~~~Y~~-----~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
..+.|.+.|.+ .+.+++|||++++++|.++|.+.|..
T Consensus 157 ~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~ 200 (205)
T 4hlc_A 157 LKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIK 200 (205)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 11234455532 13599999999999999999988864
No 44
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.13 E-value=3.4e-10 Score=96.22 Aligned_cols=132 Identities=12% Similarity=0.128 Sum_probs=82.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcC-----CccchHHHH--------
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRG-----EVVSEDIIF-------- 143 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G-----~~vpdei~~-------- 143 (233)
+|+.|+|.|++||||||+++.|++++.-..++...+.++ ..++++|+.+++++..+ ..+.+....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~ 79 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTRE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARV 79 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHH
Confidence 578999999999999999999999983222210012232 45788999999988732 223222111
Q ss_pred ----HHHHHHHHccCCCCeEEE-----------------------------------------Ee-cchHHHHHHHHHH-
Q 026804 144 ----GLLSKRLEDGYYRDNFIV-----------------------------------------TN-RGGSLKEKLEAYA- 176 (233)
Q Consensus 144 ----~li~~rL~~~~~~~GfIL-----------------------------------------VD-~~e~i~~RL~~y~- 176 (233)
++|...+. .+.+|| +| ++++..+|+....
T Consensus 80 ~~~~~~i~paL~----~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~ 155 (213)
T 4tmk_A 80 QLVETVIKPALA----NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGE 155 (213)
T ss_dssp HHHHHTHHHHHH----TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHH----CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 11222222 223444 13 4677777876431
Q ss_pred -----H----hccHHHHHHHh----cCcEEEEeCCCCHHHHHHHHHHHHhh
Q 026804 177 -----E----LSKPLEDYYQK----QKKLLEFQVGSAPVETWQGLLTALHL 214 (233)
Q Consensus 177 -----~----~~~~l~~~Y~~----~~~l~~Ida~~~~~eV~~~I~~~L~~ 214 (233)
+ ..+.+.+.|.+ ...+++||+++++++|.++|.+.|+.
T Consensus 156 ~dr~E~~~~~f~~rv~~~y~~la~~~~~~~vIDa~~s~eeV~~~I~~~l~~ 206 (213)
T 4tmk_A 156 LDRIEQESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTH 206 (213)
T ss_dssp CCTTTTSCHHHHHHHHHHHHHHHHTCTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 1 11234444432 24699999999999999999999875
No 45
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.13 E-value=2.4e-09 Score=88.41 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRS 121 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s 121 (233)
+.|.|+|+|||||||+++.|++ +|+++++.+++.++....+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~ 44 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDS 44 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCCh
Confidence 5789999999999999999998 99999999998877554443
No 46
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.11 E-value=1e-09 Score=90.44 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCCh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSS 122 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~ 122 (233)
++|+|+|++||||||+++.|++ +|++++++++++++....+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~ 44 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHP 44 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHH
Confidence 5799999999999999999999 999999999998876554433
No 47
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.09 E-value=2.1e-09 Score=90.00 Aligned_cols=131 Identities=11% Similarity=0.153 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccchHHHHHHHH------HH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVSEDIIFGLLS------KR 149 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~---gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vpdei~~~li~------~r 149 (233)
|.|+|.|+.||||||+++.|++++ |.+++.+.+ ..+++.++.+++++..+..-|.....-... +.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999988 677765422 456677777777666555443322211111 11
Q ss_pred HHccCCCCeEEE-----------------------------------------Ee-cchHHHHHHHHH---H--HhccHH
Q 026804 150 LEDGYYRDNFIV-----------------------------------------TN-RGGSLKEKLEAY---A--ELSKPL 182 (233)
Q Consensus 150 L~~~~~~~GfIL-----------------------------------------VD-~~e~i~~RL~~y---~--~~~~~l 182 (233)
+...-..+.+|+ +| +++...+|.... + +..+.+
T Consensus 75 I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~ef~~rv 154 (197)
T 3hjn_A 75 IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERV 154 (197)
T ss_dssp HHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCHHHHHHH
T ss_pred HHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccHHHHHHH
Confidence 111111223444 13 345555554321 0 112234
Q ss_pred HHHHH----hc-CcEEEEeCCCCHHHHHHHHHHHHhhc
Q 026804 183 EDYYQ----KQ-KKLLEFQVGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 183 ~~~Y~----~~-~~l~~Ida~~~~~eV~~~I~~~L~~~ 215 (233)
.+.|. +. ..+++|||++++++|.++|.+.|+.+
T Consensus 155 ~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~r 192 (197)
T 3hjn_A 155 REGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 44442 11 35899999999999999999999764
No 48
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.08 E-value=1e-09 Score=89.78 Aligned_cols=42 Identities=19% Similarity=0.415 Sum_probs=38.4
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH-hCCCEEecchhHhhc
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL-LEVPRISMSSIVRQD 116 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~-~gl~~Is~~dllr~~ 116 (233)
+.++++|+|+|+|||||||+++.|+++ +|+++|++++++++.
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~ 49 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN 49 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh
Confidence 456789999999999999999999999 899999999999874
No 49
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.07 E-value=1.7e-09 Score=90.17 Aligned_cols=52 Identities=23% Similarity=0.237 Sum_probs=42.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIAN 129 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~ 129 (233)
+++.|+|.|++||||||+++.|++ +|+++|+.++++++...++......+.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~ 54 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIAD 54 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHH
Confidence 468999999999999999999998 9999999999988765554444444443
No 50
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.07 E-value=1.5e-09 Score=89.08 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=78.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCC--EEe----cchhHhhcCCC------CChHHH--------------HHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RIS----MSSIVRQDLSP------RSSLHK--------------QIANA 130 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~--~Is----~~dllr~~i~~------~s~lg~--------------~i~~~ 130 (233)
+++.|+|.|+|||||||+|+.|+++++.. .+. .++.+++.+.. -.+... .+...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~ 82 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILPM 82 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999874 554 35555443221 111100 11233
Q ss_pred HhcCCcc-chHHHH-HHH-----------HHHHHccCCCCe-EEEEe-cchHHHHHHH-HHH------------------
Q 026804 131 VNRGEVV-SEDIIF-GLL-----------SKRLEDGYYRDN-FIVTN-RGGSLKEKLE-AYA------------------ 176 (233)
Q Consensus 131 l~~G~~v-pdei~~-~li-----------~~rL~~~~~~~G-fILVD-~~e~i~~RL~-~y~------------------ 176 (233)
+.+|..| -|.... .+. ...+........ .|+++ +++++.+|+. ...
T Consensus 83 l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~~d~~ 162 (213)
T 2plr_A 83 LKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPE 162 (213)
T ss_dssp HHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTTSCHH
T ss_pred HhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccccccccccccccccchh
Confidence 4566543 222111 111 112222111122 33344 5677888876 321
Q ss_pred -H---hccHHHHHHHhc---CcEEEEeCCCCHHHHHHHHHHHHhhc
Q 026804 177 -E---LSKPLEDYYQKQ---KKLLEFQVGSAPVETWQGLLTALHLQ 215 (233)
Q Consensus 177 -~---~~~~l~~~Y~~~---~~l~~Ida~~~~~eV~~~I~~~L~~~ 215 (233)
. ..+.+..+|.+. ..+++||+++++++|+++|.+.+...
T Consensus 163 e~~~~~~~r~~~~~~~~~~~~~~~~Id~~~~~e~v~~~I~~~l~~~ 208 (213)
T 2plr_A 163 EGFLKYQGLITEVYDKLVKDENFIVIDGTKTPKEIQIQIRKFVGEL 208 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCEEEETTSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 0 011223345432 14789999999999999999998653
No 51
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.07 E-value=8.1e-10 Score=89.18 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecchhHhhc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQD 116 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~dllr~~ 116 (233)
+.|+|+|+|||||||+|+.|+++++ +++++.++++++.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~ 44 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLAT 44 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHH
Confidence 5799999999999999999999998 8899888888643
No 52
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.06 E-value=2.1e-09 Score=87.59 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
+.|+|+|+|||||||+++.|+++++.+++.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 479999999999999999999999987775
No 53
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.06 E-value=1.8e-10 Score=95.92 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=35.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~ 115 (233)
+++.|+|+|+|||||||+++.|++++|+++++.++++++
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~ 40 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence 467899999999999999999999999999999999875
No 54
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.04 E-value=6.4e-10 Score=96.79 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=82.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHh-cCCccchHHHHHHHHHHHHc-cC-
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVN-RGEVVSEDIIFGLLSKRLED-GY- 154 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~-~G~~vpdei~~~li~~rL~~-~~- 154 (233)
+.+|+|+|+|||||||+++.|++++|+++++++++++.... +. .+..+++ .|+..+.++..+++.+.... ..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~----~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~ 122 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GT----SVAEIFEHFGESVFREKETEALKKLSLMYHQV 122 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TS----CHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-Cc----cHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCc
Confidence 56899999999999999999999999999999998887542 11 2333332 35555555555555544433 11
Q ss_pred ---CCC--------------eEEE-E-ecchHHHHHHHHH----H---Hh----------ccHHH-------HHHHhcCc
Q 026804 155 ---YRD--------------NFIV-T-NRGGSLKEKLEAY----A---EL----------SKPLE-------DYYQKQKK 191 (233)
Q Consensus 155 ---~~~--------------GfIL-V-D~~e~i~~RL~~y----~---~~----------~~~l~-------~~Y~~~~~ 191 (233)
+++ ++++ + .+++++.+|+... + .. ...+. ..|...+.
T Consensus 123 Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~ad~ 202 (250)
T 3nwj_A 123 VVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASA 202 (250)
T ss_dssp EEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHTTSSE
T ss_pred EEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhhCCE
Confidence 111 2222 3 4567777887521 0 00 01122 23554443
Q ss_pred EEE----------EeCC-CCHHHHHHHHHHHHhhc
Q 026804 192 LLE----------FQVG-SAPVETWQGLLTALHLQ 215 (233)
Q Consensus 192 l~~----------Ida~-~~~~eV~~~I~~~L~~~ 215 (233)
++. ||++ .++++|.+.|++.++..
T Consensus 203 vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~ 237 (250)
T 3nwj_A 203 RVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY 237 (250)
T ss_dssp EEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred EEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 442 2654 89999999999998754
No 55
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.04 E-value=1.4e-09 Score=88.86 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=37.8
Q ss_pred cCcccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC
Q 026804 71 EGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (233)
Q Consensus 71 ~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i 117 (233)
+|+-+.+++.|+|+|++||||||+++.|++. |+++|+.++++++..
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~ 46 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR 46 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc
Confidence 3666778899999999999999999999998 999999999887644
No 56
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.04 E-value=5.3e-10 Score=90.30 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecchhHhhc
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVRQD 116 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~dllr~~ 116 (233)
+++.|+|.|+|||||||+++.|+++++ ++++++++++++.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~ 46 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEV 46 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHH
Confidence 457899999999999999999999998 9999999887754
No 57
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.02 E-value=1.5e-09 Score=93.92 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=78.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH---hCCCEE--ecchhHhhcCCCCChH---------HHHHHHHHhcCCccchHH-
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL---LEVPRI--SMSSIVRQDLSPRSSL---------HKQIANAVNRGEVVSEDI- 141 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~---~gl~~I--s~~dllr~~i~~~s~l---------g~~i~~~l~~G~~vpdei- 141 (233)
+++.|+|.|+|||||||+|+.|+++ +|++++ +. |.+++.+..-.+. ...++..+.+...|-|..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~-D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~~~vIiD~~~ 81 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS-DLIRESFPVWKEKYEEFIKKSTYRLIDSALKNYWVIVDDTN 81 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT-HHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTTSEEEECSCC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc-hHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhCCEEEEeCCc
Confidence 4678999999999999999999998 788887 54 5555443221111 122344444422222211
Q ss_pred ----HHHHHHHHHHccCCCCe-EEEEe-cchHHHHHHHHHHH-----hccHHHHHHHh-------cCcEEEEeCCC--CH
Q 026804 142 ----IFGLLSKRLEDGYYRDN-FIVTN-RGGSLKEKLEAYAE-----LSKPLEDYYQK-------QKKLLEFQVGS--AP 201 (233)
Q Consensus 142 ----~~~li~~rL~~~~~~~G-fILVD-~~e~i~~RL~~y~~-----~~~~l~~~Y~~-------~~~l~~Ida~~--~~ 201 (233)
....+....... .... +|.++ +++++.+|+..... ....+.+.|.+ ....++||++. ++
T Consensus 82 ~~~~~~~~l~~~a~~~-~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~Id~~~~~~~ 160 (260)
T 3a4m_A 82 YYNSMRRDLINIAKKY-NKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDF 160 (260)
T ss_dssp CSHHHHHHHHHHHHHT-TCEEEEEEEECCHHHHHHHHHHTTCSSCHHHHHHHHHHCCCTTSSCGGGCCSEEEETTSCCCH
T ss_pred ccHHHHHHHHHHHHHc-CCCEEEEEEeCCHHHHHHHHHhCCCCCCHHHHHHHHHHhcCccccCCCCCCEEEEeCCCCCCH
Confidence 111222222211 1112 23344 56778888765211 11122222321 23468999986 89
Q ss_pred HHHHHHHHHHHhhccc
Q 026804 202 VETWQGLLTALHLQHI 217 (233)
Q Consensus 202 ~eV~~~I~~~L~~~~~ 217 (233)
+++++.|...+..+..
T Consensus 161 ~ei~~~I~~~l~~~~~ 176 (260)
T 3a4m_A 161 NEIAKKLIEKSKEIPK 176 (260)
T ss_dssp HHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHhcccCCCC
Confidence 9999999999876543
No 58
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.01 E-value=2.9e-09 Score=93.50 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=43.0
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHH
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQI 127 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i 127 (233)
.+.+++.|+|.|+|||||||+|+.|+ .+|+++|+++++.++....+......+
T Consensus 71 ~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i 123 (281)
T 2f6r_A 71 LPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPV 123 (281)
T ss_dssp SCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHH
Confidence 45678899999999999999999999 689999999999887665554443333
No 59
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.99 E-value=2e-09 Score=88.98 Aligned_cols=140 Identities=11% Similarity=0.085 Sum_probs=77.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh------cCC--CCCh--------HHHHHHHHHhcCCcc-ch
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ------DLS--PRSS--------LHKQIANAVNRGEVV-SE 139 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~------~i~--~~s~--------lg~~i~~~l~~G~~v-pd 139 (233)
++..|+|+|+|||||||+++.|++.+|..+++.+++.+. ... .... +...+...+..|..+ -+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~viid 107 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVSTIIT 107 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhcCCCEEEE
Confidence 567899999999999999999999999999998776321 000 0000 011111222333211 11
Q ss_pred H-HHHHHHHHHHHccCCCCeEEEEe-cchHHHHHHHHHHHh---ccHHHHHHHhc------CcEEEEeCCCCHHHHHHHH
Q 026804 140 D-IIFGLLSKRLEDGYYRDNFIVTN-RGGSLKEKLEAYAEL---SKPLEDYYQKQ------KKLLEFQVGSAPVETWQGL 208 (233)
Q Consensus 140 e-i~~~li~~rL~~~~~~~GfILVD-~~e~i~~RL~~y~~~---~~~l~~~Y~~~------~~l~~Ida~~~~~eV~~~I 208 (233)
. ...+-..+.+.+......+|.++ +++++.+|+...... ...+...|+.. ...+.||++.+++++.++|
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~Id~~~~~~e~~~~I 187 (200)
T 4eun_A 108 CSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMPASLLQSQLATLEALEPDESGIVLDLRQPPEQLIERA 187 (200)
T ss_dssp ECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHHHHCCCCCTTSCEEEEETTSCHHHHHHHH
T ss_pred chhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHHHHhCCCCCCCCeEEEECCCCHHHHHHHH
Confidence 0 01111122222211111223343 467888888643211 11222333221 1468999999999999999
Q ss_pred HHHHhhcc
Q 026804 209 LTALHLQH 216 (233)
Q Consensus 209 ~~~L~~~~ 216 (233)
.+.|....
T Consensus 188 ~~~l~~~~ 195 (200)
T 4eun_A 188 LTWLDIAP 195 (200)
T ss_dssp HHHHCCCG
T ss_pred HHHHHhcc
Confidence 99997543
No 60
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.98 E-value=2.8e-10 Score=91.14 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH-HhCCCEEecchhHhhc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSK-LLEVPRISMSSIVRQD 116 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~-~~gl~~Is~~dllr~~ 116 (233)
+.|+|.|+|||||||+|+.|++ .+|+++|++ |.+++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~-d~~r~~ 40 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQS 40 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH-HHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecH-HHHHHH
Confidence 5799999999999999999999 689999997 455554
No 61
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.98 E-value=1.6e-09 Score=86.68 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
+..|+|+|+|||||||+++.|++.++.++++.++++++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~ 42 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR 42 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHH
Confidence 457999999999999999999999999999988877653
No 62
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.96 E-value=3.9e-09 Score=85.57 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=34.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dll 113 (233)
.+++.|+|+|+|||||||+++.|++++|+++++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~ 40 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFK 40 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHH
Confidence 35689999999999999999999999999999986654
No 63
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.95 E-value=2.3e-09 Score=91.44 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=42.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGE 135 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~ 135 (233)
+++.|+|.|++||||||+++.|+++++... .+++.. ..++++|+.+++++..+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~----~~~~ep-~~~t~~g~~ir~~l~~~~ 57 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC----KLLKFP-ERSTRIGGLINEYLTDDS 57 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSE----EEEESS-CTTSHHHHHHHHHHHCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccc----eEEEec-CCCChHHHHHHHHHHhcc
Confidence 678999999999999999999999998732 233432 347788888888877653
No 64
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.95 E-value=4.7e-09 Score=87.97 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
+.+.|.|.|++||||||+++.||+++|+++++ +++++..
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~ 43 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEV 43 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHH
Confidence 45689999999999999999999999999999 8988754
No 65
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.94 E-value=2.1e-09 Score=89.62 Aligned_cols=142 Identities=9% Similarity=0.005 Sum_probs=81.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC------CCEEecchhHhhcCCCCC----h--------HHHHHHHHHhcCCcc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSIVRQDLSPRS----S--------LHKQIANAVNRGEVV 137 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g------l~~Is~~dllr~~i~~~s----~--------lg~~i~~~l~~G~~v 137 (233)
.++..|+|+|+|||||||+++.|++.++ +.+++ +|.++..+.... . +...++..+.+|..|
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~-~d~~r~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~g~~V 101 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD-GDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIA 101 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC-HHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC-ChHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 4578999999999999999999999886 56666 355565443211 1 011123456677644
Q ss_pred chHH------HHHHHHHHHHc--c---CCCCe-EEEEe-cchHHHHHH-----HH----HHHhccHHHHHHHh-cCcEEE
Q 026804 138 SEDI------IFGLLSKRLED--G---YYRDN-FIVTN-RGGSLKEKL-----EA----YAELSKPLEDYYQK-QKKLLE 194 (233)
Q Consensus 138 pdei------~~~li~~rL~~--~---~~~~G-fILVD-~~e~i~~RL-----~~----y~~~~~~l~~~Y~~-~~~l~~ 194 (233)
--+. ..+.+.+.... . ..... .|++| +++++.+|+ .. |.+....+...|+. ....++
T Consensus 102 I~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~~~~~~~~~y~~~~~~~~~ 181 (211)
T 1m7g_A 102 ITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVH 181 (211)
T ss_dssp EEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBTTTBCCCCCSSCSEE
T ss_pred EEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchhhhhhhhhhccCCCCCeEE
Confidence 2111 12233222221 0 01112 23344 466777773 11 11122233344542 122478
Q ss_pred EeCCC-CHHHHHHHHHHHHhhcccc
Q 026804 195 FQVGS-APVETWQGLLTALHLQHIN 218 (233)
Q Consensus 195 Ida~~-~~~eV~~~I~~~L~~~~~~ 218 (233)
||+++ +++++.++|.+.+..+++-
T Consensus 182 IDt~~~s~eev~~~I~~~l~~~~~~ 206 (211)
T 1m7g_A 182 VKNYELPVQDAVKQIIDYLDTKGYL 206 (211)
T ss_dssp EECSSSCHHHHHHHHHHHHHHTTCS
T ss_pred EECCCCCHHHHHHHHHHHHHHcCCc
Confidence 99998 9999999999999876644
No 66
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.93 E-value=1.2e-08 Score=81.91 Aligned_cols=137 Identities=9% Similarity=0.104 Sum_probs=76.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh------cCCC--CCh--------HHHHHHHHHhcCCc-cc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ------DLSP--RSS--------LHKQIANAVNRGEV-VS 138 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~------~i~~--~s~--------lg~~i~~~l~~G~~-vp 138 (233)
.++..|+|+|+|||||||+++.|++.+|.++++.+++.+. .... ... +...+...+..|.. |-
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 85 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLI 85 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcCCcEEE
Confidence 4567899999999999999999999999999998876421 1110 000 11112223333432 11
Q ss_pred h-HHHHHHHHHHHHccCCCC-eEEEEe-cchHHHHHHHHHHHh--ccHHH----HH-----HHhcCcEEEEeCCCCHHHH
Q 026804 139 E-DIIFGLLSKRLEDGYYRD-NFIVTN-RGGSLKEKLEAYAEL--SKPLE----DY-----YQKQKKLLEFQVGSAPVET 204 (233)
Q Consensus 139 d-ei~~~li~~rL~~~~~~~-GfILVD-~~e~i~~RL~~y~~~--~~~l~----~~-----Y~~~~~l~~Ida~~~~~eV 204 (233)
+ .....-..+.+.+.. .. -+|+++ +++++.+|+...... ..++. +. |.+ ...+.||++.+++++
T Consensus 86 ~~~~~~~~~~~~l~~~~-~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Id~~~~~~~~ 163 (175)
T 1knq_A 86 VCSALKKHYRDLLREGN-PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADE-TDVLVVDIDQPLEGV 163 (175)
T ss_dssp ECCCCSHHHHHHHHTTC-TTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHCCCCCTTC-TTEEEEECSSCHHHH
T ss_pred EeCchHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhccCCCCchHHHHHHHHhhhCcccCC-CCeEEEeCCCCHHHH
Confidence 1 111111112233211 12 233344 567778887643211 01221 11 222 236899999999999
Q ss_pred HHHHHHHHhh
Q 026804 205 WQGLLTALHL 214 (233)
Q Consensus 205 ~~~I~~~L~~ 214 (233)
.++|.+.+..
T Consensus 164 ~~~i~~~l~~ 173 (175)
T 1knq_A 164 VASTIEVIKK 173 (175)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999998853
No 67
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.92 E-value=1.1e-09 Score=88.13 Aligned_cols=131 Identities=10% Similarity=0.090 Sum_probs=72.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEe--cchhHhhcCCC------C-----------Ch-H-------HHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVRQDLSP------R-----------SS-L-------HKQIANA 130 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is--~~dllr~~i~~------~-----------s~-l-------g~~i~~~ 130 (233)
++.|+|+|+|||||||+|+.|+++++.++++ ++++....... + .. . ...++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAM 82 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999887765 55443321110 0 01 0 1123455
Q ss_pred HhcCCc-cchHHH------HHHHHHHHHccCCCCe--EEEE-ecchHHHHHHHHHHHhccHHH-----HHHHhcCcEEEE
Q 026804 131 VNRGEV-VSEDII------FGLLSKRLEDGYYRDN--FIVT-NRGGSLKEKLEAYAELSKPLE-----DYYQKQKKLLEF 195 (233)
Q Consensus 131 l~~G~~-vpdei~------~~li~~rL~~~~~~~G--fILV-D~~e~i~~RL~~y~~~~~~l~-----~~Y~~~~~l~~I 195 (233)
+..|.. |-+... .+.+.+.+. ..+ +|.+ .+.+++.+|+.........+. ..|.....-+.|
T Consensus 83 ~~~g~~vi~~~~~~~~~~~~~~~~~~~~----~~~~~~v~l~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~d~~i 158 (178)
T 1qhx_A 83 ARAGARIIIDDVFLGGAAAQERWRSFVG----DLDVLWVGVRCDGAVAEGRETARGDRVAGMAAKQAYVVHEGVEYDVEV 158 (178)
T ss_dssp HHTTCEEEEEECCTTTHHHHHHHHHHHT----TCCEEEEEEECCHHHHHHHHHHTSSSCTTHHHHHTTGGGTTCCCSEEE
T ss_pred HhcCCeEEEEeccccChHHHHHHHHHhc----CCcEEEEEEECCHHHHHHHHHhhCCcccchhhhhchhhccCCCCcEEE
Confidence 566642 222211 122333332 223 3334 357888999875322111111 111111123688
Q ss_pred eCC-CCHHHHHHHHHHHH
Q 026804 196 QVG-SAPVETWQGLLTAL 212 (233)
Q Consensus 196 da~-~~~~eV~~~I~~~L 212 (233)
|++ .+++++.+.|.+.|
T Consensus 159 dt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 159 DTTHKESIECAWAIAAHV 176 (178)
T ss_dssp ETTSSCHHHHHHHHHTTC
T ss_pred ECCCCCHHHHHHHHHHHh
Confidence 887 59999999988755
No 68
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.91 E-value=5.4e-09 Score=87.32 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDL 117 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i 117 (233)
-.++|.|+|++||||||+|+.|++.+|+++|++|++.++..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~ 51 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVL 51 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHH
Confidence 34789999999999999999999999999999999987654
No 69
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.91 E-value=3e-08 Score=81.21 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
.|.|.|++||||||+|+.|++++|+++++.+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~ 40 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAA 40 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhh
Confidence 7899999999999999999999999999999988753
No 70
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.89 E-value=2.1e-09 Score=86.98 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=36.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
.++..|+|+|+|||||||+++.|++++|++++++++++++.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~ 49 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence 34568999999999999999999999999999999988764
No 71
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.88 E-value=1.3e-08 Score=87.73 Aligned_cols=40 Identities=18% Similarity=0.104 Sum_probs=36.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~ 115 (233)
.++.+|.|+||+||||||+++.|++++|+.+++.|+++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 3567999999999999999999999999999999999843
No 72
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.86 E-value=1.1e-08 Score=86.79 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=37.5
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~ 115 (233)
+.++.+|.|+|+|||||||+++.|++++|+++++.+++.++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~ 53 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEc
Confidence 45778999999999999999999999999999999999875
No 73
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.84 E-value=2.6e-08 Score=82.51 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=26.2
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
+-.++..|+|+|||||||||+++.|++.++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345778999999999999999999999984
No 74
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.83 E-value=7.6e-09 Score=85.57 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=35.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh-CCCEEecchhHhh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQ 115 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~-gl~~Is~~dllr~ 115 (233)
.++..|.|+|+|||||||+++.|++.+ ++++++.+++++.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKP 59 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccC
Confidence 456789999999999999999999999 8999999988753
No 75
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.77 E-value=2.8e-08 Score=85.55 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=27.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh-CCCEE
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-EVPRI 107 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~-gl~~I 107 (233)
.+++.|+|.|++||||||+++.|++++ ++.++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 577899999999999999999999998 65555
No 76
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.77 E-value=2.4e-08 Score=81.21 Aligned_cols=137 Identities=14% Similarity=0.142 Sum_probs=76.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC---C--CEEecchhHhhcCCCCC---hHHH---------HHHHHHhcCCccc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE---V--PRISMSSIVRQDLSPRS---SLHK---------QIANAVNRGEVVS 138 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g---l--~~Is~~dllr~~i~~~s---~lg~---------~i~~~l~~G~~vp 138 (233)
.+++.|+|+|+|||||||+++.|++.++ . .+++ +|.++..+..+. .... .++.....|..|-
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~~vi 89 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD-GDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGVIVI 89 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE-HHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee-HHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCCEEE
Confidence 4678999999999999999999999984 2 3455 355565443221 1111 1122345665432
Q ss_pred -h-----HHHHHHHHHHHHccCCCCeE-EEEe-cchHHHHHHHH--HHH----hc---cHHHHHHHh-cCcEEEEeCC-C
Q 026804 139 -E-----DIIFGLLSKRLEDGYYRDNF-IVTN-RGGSLKEKLEA--YAE----LS---KPLEDYYQK-QKKLLEFQVG-S 199 (233)
Q Consensus 139 -d-----ei~~~li~~rL~~~~~~~Gf-ILVD-~~e~i~~RL~~--y~~----~~---~~l~~~Y~~-~~~l~~Ida~-~ 199 (233)
+ ....+.+.+.+.... .... |++| +++++.+|+.. +.. .. ..+.+.|.+ ....++||++ .
T Consensus 90 ~d~~~~~~~~r~~~~~~~~~~~-~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~Id~~~~ 168 (186)
T 2yvu_A 90 CSFVSPYKQARNMVRRIVEEEG-IPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQLVLDTESN 168 (186)
T ss_dssp EECCCCCHHHHHHHHHHHHHTT-CCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCCCSSCSEEEETTTS
T ss_pred EeCccccHHHHHHHHHHhhccC-CCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhcccCCCCCcEEEECCCC
Confidence 1 111223333333221 1222 3344 56777788632 111 11 112223432 1235789997 8
Q ss_pred CHHHHHHHHHHHHhh
Q 026804 200 APVETWQGLLTALHL 214 (233)
Q Consensus 200 ~~~eV~~~I~~~L~~ 214 (233)
+++++.++|.+.|..
T Consensus 169 ~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 169 TIEHNVSYLYSLVKA 183 (186)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998853
No 77
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.74 E-value=1.1e-08 Score=87.70 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=26.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
.+++.|+|.|++||||||+++.|+++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47889999999999999999999998754
No 78
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.69 E-value=2.2e-07 Score=90.57 Aligned_cols=142 Identities=15% Similarity=0.102 Sum_probs=84.0
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh---CCCEEecc-hhHhhcCCCC---C-h--------HHHHHHHHHhcCCccc
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMS-SIVRQDLSPR---S-S--------LHKQIANAVNRGEVVS 138 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~---gl~~Is~~-dllr~~i~~~---s-~--------lg~~i~~~l~~G~~vp 138 (233)
+.+++.|+|+|+|||||||+|+.|++++ |++++.++ |.+|..+... + . +...++..++.|..|-
T Consensus 49 ~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~i~eva~~~l~~G~iVI 128 (630)
T 1x6v_B 49 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCI 128 (630)
T ss_dssp SCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHHHHHHHHHHHHhCCCEEE
Confidence 3478899999999999999999999999 99988875 7777655432 1 1 1112233455665432
Q ss_pred hH------HHHHHHHHHHHccCCCCeEEEEe-cchHHHHHHHH--HHHh-------ccHHHHHHHh-cCcEEEEeCC-CC
Q 026804 139 ED------IIFGLLSKRLEDGYYRDNFIVTN-RGGSLKEKLEA--YAEL-------SKPLEDYYQK-QKKLLEFQVG-SA 200 (233)
Q Consensus 139 de------i~~~li~~rL~~~~~~~GfILVD-~~e~i~~RL~~--y~~~-------~~~l~~~Y~~-~~~l~~Ida~-~~ 200 (233)
.+ ...+.+.+.+.......-.|++| +++++.+|+.. |.+. ...+...|.. ...-++||++ .+
T Consensus 129 ~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~~~~~~~~~Ye~p~~~dlvIDts~~s 208 (630)
T 1x6v_B 129 TSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCD 208 (630)
T ss_dssp EECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----CBTTTBCCCCCSSCSEEEETTSSC
T ss_pred EeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHHHHHHhhhhhcccCCCcEEEECCCCC
Confidence 11 11233333333211111123345 56788888642 3221 1112233431 1122689987 69
Q ss_pred HHHHHHHHHHHHhhcc
Q 026804 201 PVETWQGLLTALHLQH 216 (233)
Q Consensus 201 ~~eV~~~I~~~L~~~~ 216 (233)
++++.++|.+.|..+.
T Consensus 209 ~eevv~~Il~~L~~~~ 224 (630)
T 1x6v_B 209 VNDCVQQVVELLQERD 224 (630)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998654
No 79
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.68 E-value=7.8e-08 Score=79.35 Aligned_cols=140 Identities=13% Similarity=0.107 Sum_probs=75.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh---CCC--EEecchhHhhcCCCCCh------------HHHHHHHHHhcCCccc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVRQDLSPRSS------------LHKQIANAVNRGEVVS 138 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~---gl~--~Is~~dllr~~i~~~s~------------lg~~i~~~l~~G~~vp 138 (233)
.++..|+|+|++||||||+++.|++.+ |.. +++.+++ +..+..+.. +...+......|..+-
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 101 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV-RHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGIICI 101 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-TTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh-hhHhhcccCcChHHHHHHHHHHHHHHHHHHhCCceEE
Confidence 467799999999999999999999998 666 7775444 433322211 0111222233443221
Q ss_pred hHH--HHHHHHHHHHccCCCCeE--EEE-ecchHHHHHH------HHHHHhc---cHHHHHHHhc-CcEEEEeCC--CCH
Q 026804 139 EDI--IFGLLSKRLEDGYYRDNF--IVT-NRGGSLKEKL------EAYAELS---KPLEDYYQKQ-KKLLEFQVG--SAP 201 (233)
Q Consensus 139 dei--~~~li~~rL~~~~~~~Gf--ILV-D~~e~i~~RL------~~y~~~~---~~l~~~Y~~~-~~l~~Ida~--~~~ 201 (233)
... ...-..+.+.+......| |.+ .+++++.+|+ ....... ..+...|.+. ..-+.||++ .++
T Consensus 102 ~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~idt~~~~~~ 181 (200)
T 3uie_A 102 ASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLGREGGTSP 181 (200)
T ss_dssp EECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBCCCCCSSCSEEECCSSCCCH
T ss_pred EecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCCCCCcCcCCCCCCEEEecCCCCCH
Confidence 000 001122233322222345 334 4567787886 2111111 1222334321 123688876 499
Q ss_pred HHHHHHHHHHHhhcc
Q 026804 202 VETWQGLLTALHLQH 216 (233)
Q Consensus 202 ~eV~~~I~~~L~~~~ 216 (233)
+++.++|.+.|....
T Consensus 182 ~e~v~~i~~~l~~~~ 196 (200)
T 3uie_A 182 IEMAEKVVGYLDNKG 196 (200)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999997654
No 80
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.67 E-value=1.2e-07 Score=76.56 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=34.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh---CCCEEecc-hhHhhc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL---EVPRISMS-SIVRQD 116 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~---gl~~Is~~-dllr~~ 116 (233)
.++..|+|+|++||||||+++.|++.+ |++++.++ +.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~ 47 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 47 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHH
Confidence 467899999999999999999999998 99888664 555543
No 81
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.64 E-value=2.4e-07 Score=79.19 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=35.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
.+.+.|.|.|++||||||+|+.||+++|+++++ +|+++..
T Consensus 12 ~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~ 51 (223)
T 3hdt_A 12 NKNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLA 51 (223)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHH
Confidence 346789999999999999999999999999999 7887653
No 82
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.59 E-value=6.7e-07 Score=74.44 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=73.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCC-CEEecc---------------------hhHhhcCCCCC----------h-
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMS---------------------SIVRQDLSPRS----------S- 122 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl-~~Is~~---------------------dllr~~i~~~s----------~- 122 (233)
.+|..|+|+||+||||||+++.|++.+.- ...+.. +.+.+.+..+. .
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 35678999999999999999999998842 121111 11111110000 0
Q ss_pred --HHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCeEEEE-----------------ecchHHHHHHHHHHHhccHHH
Q 026804 123 --LHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDNFIVT-----------------NRGGSLKEKLEAYAELSKPLE 183 (233)
Q Consensus 123 --lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~GfILV-----------------D~~e~i~~RL~~y~~~~~~l~ 183 (233)
....+.+.+++|+.+.-++-.+... .+.+.....-+|++ ++++.+++|+.....+.
T Consensus 86 g~~~~~i~~~l~~g~~vild~~~~g~~-~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~---- 160 (208)
T 3tau_A 86 GTPLEYVEEKLAAGVDIFLEIEVQGAM-QVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEI---- 160 (208)
T ss_dssp EEEHHHHHHHHHTTCCEEEECCHHHHH-HHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHH----
T ss_pred CCcHHHHHHHHHcCCeEEEEeeHHHHH-HHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH----
Confidence 1144677788887654222122211 22222222223332 45678888887655432
Q ss_pred HHHHhcCcEEEEeCCCCHHHHHHHHHHHHhhcc
Q 026804 184 DYYQKQKKLLEFQVGSAPVETWQGLLTALHLQH 216 (233)
Q Consensus 184 ~~Y~~~~~l~~Ida~~~~~eV~~~I~~~L~~~~ 216 (233)
+++..- .++.+|. +.+++.++|.++|....
T Consensus 161 ~~~~~~-d~vivN~--~~~~~~~~l~~~i~~~~ 190 (208)
T 3tau_A 161 EMMASY-DYAVVND--VVANAVQKIKGIVETEH 190 (208)
T ss_dssp HHGGGS-SEEEECS--SHHHHHHHHHHHHHHHH
T ss_pred HhhccC-CEEEECc--CHHHHHHHHHHHHHHHH
Confidence 233322 2456653 69999999999997654
No 83
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.58 E-value=1.3e-06 Score=74.27 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=43.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANA 130 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~ 130 (233)
-..-|-|+|.+||||||+++.|++ +|+++|+.+.+.++....+++....+.+.
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~ 60 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQT 60 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHH
Confidence 345788999999999999999998 99999999999988777666554455443
No 84
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.52 E-value=3.1e-08 Score=86.25 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-CCCEEecchhHhhc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL-EVPRISMSSIVRQD 116 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~-gl~~Is~~dllr~~ 116 (233)
+.|+|+|+|||||||+|+.|++++ |+++|+++ .+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~ 40 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQS 40 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHH
Confidence 579999999999999999999985 99999997 55554
No 85
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.46 E-value=2.1e-06 Score=69.94 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
+|..+.|+||+||||||+++.|+..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 566899999999999999999999864
No 86
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.44 E-value=5.6e-07 Score=86.73 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=79.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC----CCEEec-chhHhhcCCCCC---h---------HHHHHHHHHhcCCccc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE----VPRISM-SSIVRQDLSPRS---S---------LHKQIANAVNRGEVVS 138 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g----l~~Is~-~dllr~~i~~~s---~---------lg~~i~~~l~~G~~vp 138 (233)
.+++.|+|+|+|||||||+|+.|+++++ .+++.+ +|.++..+..+. . ++..++.+.+.|..|.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~VI 473 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVI 473 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 3568999999999999999999999986 443332 466666544321 1 1234555667776442
Q ss_pred hH------HHHHHHHHHHHccCCCCeEEE--Ee-cchHHHHHHHH--HHHh----cc---HHH-HHHHhcCcEEEEeCC-
Q 026804 139 ED------IIFGLLSKRLEDGYYRDNFIV--TN-RGGSLKEKLEA--YAEL----SK---PLE-DYYQKQKKLLEFQVG- 198 (233)
Q Consensus 139 de------i~~~li~~rL~~~~~~~GfIL--VD-~~e~i~~RL~~--y~~~----~~---~l~-~~Y~~~~~l~~Ida~- 198 (233)
.+ ...+.+.+.+... +.|++ +| +++++.+|... |.+. .. .+. .||.....-+.||++
T Consensus 474 ~~~is~~~~~R~~~r~l~~~~---g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~~~~p~~~dl~IDts~ 550 (573)
T 1m8p_A 474 AAPIAPYEESRKFARDAVSQA---GSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSK 550 (573)
T ss_dssp EECCCCCHHHHHHHHHHHHTT---SEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECTTT
T ss_pred EEcCCCcHHHHHHHHHHHHhc---CCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccccccccCCCCEEEECCC
Confidence 11 1223333333321 23443 44 46777777421 2211 11 011 122211123789987
Q ss_pred CCHHHHHHHHHHHHhhcc
Q 026804 199 SAPVETWQGLLTALHLQH 216 (233)
Q Consensus 199 ~~~~eV~~~I~~~L~~~~ 216 (233)
.+++++.++|+..|..++
T Consensus 551 ~s~eevv~~Il~~l~~~~ 568 (573)
T 1m8p_A 551 QSVRSIVHEIILVLESQG 568 (573)
T ss_dssp SCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 599999999999998765
No 87
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.44 E-value=5.8e-07 Score=83.03 Aligned_cols=97 Identities=8% Similarity=-0.038 Sum_probs=59.8
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCChHHHHHHHHHhcCCccc-hH-----HHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSSLHKQIANAVNRGEVVS-ED-----IIFGLLSK 148 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~lg~~i~~~l~~G~~vp-de-----i~~~li~~ 148 (233)
+.++..|+|+|+|||||||+|+.|++++++.+|+.+++ +. -..+...+...+.+|..+- |. .....+.+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~----~~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~ 329 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-GS----WQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQ 329 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-CS----HHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-HH----HHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH
Confidence 44567899999999999999999999999999998765 21 1123345566677776442 21 11222222
Q ss_pred HHHccCCCCeEEEE-ecchHHHHHHHHHH
Q 026804 149 RLEDGYYRDNFIVT-NRGGSLKEKLEAYA 176 (233)
Q Consensus 149 rL~~~~~~~GfILV-D~~e~i~~RL~~y~ 176 (233)
.+......--+|.+ .+.+++.+|+....
T Consensus 330 ~~~~~~~~~~~v~l~~~~e~l~~R~~~R~ 358 (416)
T 3zvl_A 330 CAKDAGVPCRCFNFCATIEQARHNNRFRE 358 (416)
T ss_dssp HHHHHTCCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEEEeCCHHHHHHHHHhhc
Confidence 22222211123334 35678888887654
No 88
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.43 E-value=1.3e-07 Score=81.52 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=35.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~ 115 (233)
.+++.|+|.|||||||||+++.|++++|+++++.+++++.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~ 46 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRI 46 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHH
Confidence 4578999999999999999999999999999999998765
No 89
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.43 E-value=1.7e-07 Score=76.56 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+|..|+|+||+||||||+++.|++.+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999999987
No 90
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.38 E-value=2e-07 Score=79.82 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=35.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCC----------EEecchhHhh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP----------RISMSSIVRQ 115 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~----------~Is~~dllr~ 115 (233)
.++++|.|.|+|||||||+|+.|++++|++ +|+++++++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~ 69 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV 69 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccc
Confidence 456789999999999999999999999988 7999998864
No 91
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.36 E-value=2.2e-06 Score=72.54 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-CC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-EV 104 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~-gl 104 (233)
+++.|+|.|++||||||+++.|++++ +.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999 44
No 92
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.33 E-value=6.8e-07 Score=76.68 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=33.1
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhCCC-EEecchhHhhcC
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP-RISMSSIVRQDL 117 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~gl~-~Is~~dllr~~i 117 (233)
..++..|+|+|+|||||||+|+.|+++++.. ++..+|.+|..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~ 72 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQH 72 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTS
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhc
Confidence 3467899999999999999999999999742 333456666543
No 93
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.33 E-value=4.4e-07 Score=78.21 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIV 113 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dll 113 (233)
..|+|+|||||||||+|+.|+++++.++|+++++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 36899999999999999999999999999998864
No 94
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.29 E-value=1.5e-06 Score=83.30 Aligned_cols=139 Identities=18% Similarity=0.217 Sum_probs=76.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCC-----CEEecchhHhhcCCCCCh------------HHHHHHHHHhcCCccch
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEV-----PRISMSSIVRQDLSPRSS------------LHKQIANAVNRGEVVSE 139 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl-----~~Is~~dllr~~i~~~s~------------lg~~i~~~l~~G~~vpd 139 (233)
+++.|+|+|+|||||||+|+.|+++++. .+++ +|.+++.+..+.. +...++..++.|..+.-
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld-~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~ 449 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD-GDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVIC 449 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-HHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC-chHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4678999999999999999999999863 5555 4667765543211 11234455667764322
Q ss_pred HHH--HHHHHHHHHccCCCCeE--EEEe-cchHHHHHHH--HHHHhccHHHH--------HHHhcCcEEEEeCC-CCHHH
Q 026804 140 DII--FGLLSKRLEDGYYRDNF--IVTN-RGGSLKEKLE--AYAELSKPLED--------YYQKQKKLLEFQVG-SAPVE 203 (233)
Q Consensus 140 ei~--~~li~~rL~~~~~~~Gf--ILVD-~~e~i~~RL~--~y~~~~~~l~~--------~Y~~~~~l~~Ida~-~~~~e 203 (233)
+.. .+--.+.+.+.-...++ |+|+ +++++.+|+. .|.+.....++ |+.....-++||++ .++++
T Consensus 450 d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~adivIDts~~s~ee 529 (546)
T 2gks_A 450 ALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDTTKLTPEE 529 (546)
T ss_dssp ECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCSEEEETTTSCHHH
T ss_pred EcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhccccccCCcEEEECCCCCHHH
Confidence 110 00001112211111233 3344 4677778763 12221111111 22111223789986 89999
Q ss_pred HHHHHHHHHhhcc
Q 026804 204 TWQGLLTALHLQH 216 (233)
Q Consensus 204 V~~~I~~~L~~~~ 216 (233)
+.++|.+.|..++
T Consensus 530 v~~~I~~~L~~~g 542 (546)
T 2gks_A 530 SALKILEFLKKEG 542 (546)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999997643
No 95
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.29 E-value=6.7e-06 Score=68.36 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~ 102 (233)
|+|+||+||||+|+++.|.+++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998886
No 96
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.27 E-value=2.9e-06 Score=68.83 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=24.9
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
|.++..++|+||+||||||+++.|++.+.
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45677899999999999999999998763
No 97
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.26 E-value=5.5e-07 Score=79.23 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=34.3
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh--CCCEEecchhHhhc
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISMSSIVRQD 116 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~--gl~~Is~~dllr~~ 116 (233)
..++..|+|.|||||||||+|+.|++++ +..+||. |.+|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~-D~~R~~ 72 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN-DTFKQQ 72 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT-HHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec-hHhHHh
Confidence 4567899999999999999999999999 7788885 555543
No 98
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.19 E-value=5.2e-06 Score=67.61 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
..++|+||+||||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3678999999999999999997753
No 99
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.11 E-value=1.9e-06 Score=69.60 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=31.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCC--EEecchhHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP--RISMSSIVR 114 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~--~Is~~dllr 114 (233)
.++..|+|+|||||||||+++.|++.++.. +++.+++..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 47 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence 356789999999999999999999987665 666656543
No 100
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.09 E-value=1.9e-06 Score=82.79 Aligned_cols=137 Identities=18% Similarity=0.152 Sum_probs=67.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC------CCEEecchhHhhcCCCC---Ch---------HHHHHHHHHhcCCcc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE------VPRISMSSIVRQDLSPR---SS---------LHKQIANAVNRGEVV 137 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g------l~~Is~~dllr~~i~~~---s~---------lg~~i~~~l~~G~~v 137 (233)
.++..|+|+|++||||||+++.|++.++ +.+++.+++ ++.+..+ +. ++..++.....|..+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~-~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~iv 445 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV-RRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIA 445 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH-HHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH-HHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence 3678999999999999999999999985 334664444 3322111 11 122233333333322
Q ss_pred ------chHHHHHHHHHHHHccCCCCeEEEE--e-cchHHHHHHHH--HHHhc-cHHHH-------HHHhcCcEEEEeCC
Q 026804 138 ------SEDIIFGLLSKRLEDGYYRDNFIVT--N-RGGSLKEKLEA--YAELS-KPLED-------YYQKQKKLLEFQVG 198 (233)
Q Consensus 138 ------pdei~~~li~~rL~~~~~~~GfILV--D-~~e~i~~RL~~--y~~~~-~~l~~-------~Y~~~~~l~~Ida~ 198 (233)
|.....+.+.+.+... ++|+.| + +.+++.+|... |.+.. ..+.+ ||.....=++||++
T Consensus 446 i~~~~~~~~~~r~~~r~lL~~~---g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~~adl~Idt~ 522 (552)
T 3cr8_A 446 ICAPIAPYRQTRRDVRAMIEAV---GGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDTT 522 (552)
T ss_dssp EECCCCCCHHHHHHHHHHHHTT---SEEEEEEECC-----------------------------CCCCCCSSCSEEECCS
T ss_pred EEecCCccHHHHHHHHHHHHHc---CCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCCCCCEEEECC
Confidence 1122334444455532 245554 3 45777777642 32211 11222 23211112678876
Q ss_pred -CCHHHHHHHHHHHHhhcc
Q 026804 199 -SAPVETWQGLLTALHLQH 216 (233)
Q Consensus 199 -~~~~eV~~~I~~~L~~~~ 216 (233)
.+++++.++|.+.|....
T Consensus 523 ~~s~~e~v~~Il~~L~~~~ 541 (552)
T 3cr8_A 523 GLAIDEAVQQILLKLEHEG 541 (552)
T ss_dssp SCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 799999999999997543
No 101
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.07 E-value=2e-05 Score=66.19 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=25.7
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
+.++..|+|+||+||||||+++.|.+.+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45677899999999999999999998875
No 102
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.06 E-value=3.7e-06 Score=80.07 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=26.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
.+++.|+|+|.+||||||+|+.|+++++.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999986
No 103
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.03 E-value=4.3e-05 Score=64.28 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=24.9
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+|..|.|.|+.||||||+++.|++.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 457889999999999999999999987
No 104
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.99 E-value=9.7e-06 Score=67.98 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=18.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH-HHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLS-KLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La-~~~ 102 (233)
.+|..+.|+||+||||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456789999999999999999999 765
No 105
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.98 E-value=4.2e-06 Score=75.42 Aligned_cols=34 Identities=26% Similarity=0.200 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dl 112 (233)
..|+|+||+||||||+|+.|+++++.++|+++++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4799999999999999999999999999999875
No 106
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.89 E-value=5.5e-06 Score=75.18 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dl 112 (233)
++..|+|+||+||||||+|..||++++..+||.+.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 456899999999999999999999999999998776
No 107
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.85 E-value=3.7e-06 Score=74.12 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=31.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecchhHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIVR 114 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~dllr 114 (233)
+++.|.|.|++||||||+|+.|++.+| +++|+++++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 567899999999999999999999987 78999988775
No 108
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.83 E-value=8.6e-06 Score=66.94 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=33.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC--CCEEecchhHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMSSIVR 114 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g--l~~Is~~dllr 114 (233)
.++..|.|+||+||||||+++.|+..++ +.+++.+..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 3567899999999999999999999998 88888877654
No 109
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.82 E-value=1.6e-05 Score=69.73 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=30.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIV 113 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dll 113 (233)
..+..++|.||||+|||++|+.||+.+|.+++.+ +++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~ 73 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE 73 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh
Confidence 3455677889999999999999999999876554 4554
No 110
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.81 E-value=1.2e-05 Score=64.95 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC-CEEecchhH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEV-PRISMSSIV 113 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl-~~Is~~dll 113 (233)
..++|+|||||||||+++.|++.++. .+++.+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~ 38 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIIN 38 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchh
Confidence 47889999999999999999998865 677766554
No 111
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.77 E-value=1.3e-05 Score=72.60 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dl 112 (233)
..|+|.||+||||||+|+.|+++++..+|+++++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4789999999999999999999999999999876
No 112
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.76 E-value=1.6e-05 Score=71.60 Aligned_cols=36 Identities=28% Similarity=0.220 Sum_probs=32.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dl 112 (233)
++..|+|+||+||||||+|..|+++++..+||.+.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 456889999999999999999999999999998865
No 113
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.71 E-value=1.6e-05 Score=72.54 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCE
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR 106 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~ 106 (233)
+...|+|+|+|||||||+++.|++.+++++
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 445799999999999999999999999887
No 114
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.69 E-value=1.5e-05 Score=75.80 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCE-----EecchhHhh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPR-----ISMSSIVRQ 115 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~-----Is~~dllr~ 115 (233)
.++.|+|+|.|||||||+|+.|++.+++.+ ++.|++.+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 457899999999999999999999985443 676776554
No 115
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.68 E-value=2.7e-05 Score=69.93 Aligned_cols=36 Identities=28% Similarity=0.233 Sum_probs=32.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSI 112 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dl 112 (233)
.+..|+|+||+||||||+|..|+++++.++|+.+.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 346789999999999999999999999999998763
No 116
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.68 E-value=4.3e-05 Score=64.80 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=27.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
-++|.||||+||||+|+.|+..++.+++.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 488999999999999999999999877654
No 117
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.68 E-value=1.9e-05 Score=68.22 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQD 116 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~ 116 (233)
++|.|.|++||||||+|+.|.+++|++++++++.++++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~ 39 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDA 39 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHH
Confidence 57899999999999999999999999999999877654
No 118
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.62 E-value=1e-05 Score=66.25 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
+.|+|.|++||||||+++.|++.++.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999853
No 119
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.61 E-value=3.5e-05 Score=63.74 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=30.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecch
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSS 111 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~d 111 (233)
.++..+.|+||+||||||+++.|+..+. ...|++++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 4678999999999999999999999985 55677654
No 120
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.59 E-value=4.8e-05 Score=66.21 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=29.4
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
|..+.++ ++|+|||||||||+++.|+..++...|.+
T Consensus 40 ~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 40 GLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp TCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 3344455 89999999999999999999998766554
No 121
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.59 E-value=9.2e-05 Score=58.09 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..++|.|+||+|||++++.+++.+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999987
No 122
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.58 E-value=7.2e-05 Score=61.55 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=25.2
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+.++..|.|+|++||||||+++.|+..+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999876
No 123
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.58 E-value=6e-05 Score=63.44 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
+..++|.||||+|||++|+.+++.++.+++.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 34688999999999999999999999887654
No 124
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.58 E-value=4.7e-05 Score=65.86 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+..++|.||||+|||++|+.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999987
No 125
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.55 E-value=4.1e-05 Score=64.82 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=26.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
++|+||||+||||+++.|+...+.+.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 899999999999999999999987766553
No 126
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=5.6e-05 Score=70.03 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=32.6
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhHhh
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQ 115 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dllr~ 115 (233)
|-.|.+ -++|.||||+|||.+|+.+|...|.+++++ .+++..
T Consensus 178 gi~~pr--GvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 178 GIAQPK--GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp TCCCCC--CEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCC--ceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 434434 588999999999999999999999987654 455443
No 127
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.53 E-value=6.4e-05 Score=63.73 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=27.2
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
-.++..|.|+||.||||||+++.|+..+|.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3467899999999999999999999998865
No 128
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.52 E-value=7.2e-05 Score=60.01 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh----C--CCEEecchhHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL----E--VPRISMSSIVR 114 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~----g--l~~Is~~dllr 114 (233)
++..++|.||||+||||+++.++..+ | +.+++..+++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~ 80 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF 80 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 45688999999999999999998876 4 34566655543
No 129
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.51 E-value=6.9e-05 Score=67.08 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
.+..++|.||||+|||++|+.|++.++.+++.++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 3457899999999999999999999999887653
No 130
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.49 E-value=7.5e-05 Score=64.44 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEE--ecchhH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIV 113 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~I--s~~dll 113 (233)
+..++|.||||+||||+|+.+++.++.+++ +..++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 457899999999999999999999997665 444544
No 131
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.47 E-value=8.4e-05 Score=63.62 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
+..++|.||||+|||++|+.+++.++.+++.+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 44689999999999999999999999877654
No 132
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=7.8e-05 Score=69.61 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=31.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhHhh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQ 115 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dllr~ 115 (233)
+.-|+|.||||+|||++|+.+|..+|.+++.+ .+++..
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~ 254 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM 254 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc
Confidence 34688999999999999999999999987654 455543
No 133
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.46 E-value=8.9e-05 Score=64.93 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=30.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc--hhHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVR 114 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~--dllr 114 (233)
+..++|.||||+|||++|+.|++.++.+++.++ +++.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 446899999999999999999999998877654 5543
No 134
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.46 E-value=0.00012 Score=57.54 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..++|.||||+|||++++.+++.+
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999987
No 135
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.45 E-value=0.00011 Score=62.90 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
.+..++|.||||+|||++|+.+++..+.+++.+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 445789999999999999999999999987655
No 136
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.43 E-value=8.7e-05 Score=62.66 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=34.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC---CCEEecchhHhh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE---VPRISMSSIVRQ 115 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g---l~~Is~~dllr~ 115 (233)
..+.|.|.|.|||||+|+|+.|.+.+| ++.++++|.++.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~ 51 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKE 51 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHH
Confidence 345899999999999999999999885 778999999985
No 137
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.43 E-value=9.9e-05 Score=69.13 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=30.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
.+..|+|+||||+||||+|+.||+.++.+++.++
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 3456999999999999999999999999988765
No 138
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=9.5e-05 Score=68.91 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
-|+|.||||+|||++|+.+|..+|.+++.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 588999999999999999999999987655
No 139
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.41 E-value=0.00011 Score=62.98 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
.+..++|.||||+|||++|+.+++.++.+++.+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i 81 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 345788999999999999999999998876644
No 140
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=9.8e-05 Score=69.01 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhHhh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQ 115 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dllr~ 115 (233)
.-|+|.||||+|||++|+.||..+|.+++.+ ++++..
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 4588999999999999999999999987654 455433
No 141
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.41 E-value=4.1e-05 Score=71.46 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
.+++.|+|+|.|||||||+++.|++.++..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 456789999999999999999999997643
No 142
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.41 E-value=0.0001 Score=64.99 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=31.8
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhC-------CCEE-ecchhH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRI-SMSSIV 113 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~g-------l~~I-s~~dll 113 (233)
+.++..|.|.|++||||||+++.|++.++ ...+ ++++.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 35778999999999999999999999875 3445 777654
No 143
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.40 E-value=0.00012 Score=64.65 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=31.5
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhC-------CCEEecchh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSI 112 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~g-------l~~Is~~dl 112 (233)
+.++..|.|+|++||||||+++.|+..++ +..|++++.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 35678999999999999999999999876 556666654
No 144
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.40 E-value=0.00012 Score=64.27 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
..++|.||||+|||++|+.+++.++.+++.+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 46899999999999999999999999887654
No 145
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.40 E-value=9.8e-05 Score=68.51 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=30.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecch
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~d 111 (233)
..|+|+||+||||||+|..|+++++..+|+.+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 478899999999999999999999998999876
No 146
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.39 E-value=0.00014 Score=64.16 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=30.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVR 114 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dllr 114 (233)
+..++|.||||+|||++|+.+++..+.+++.+ .+++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 45789999999999999999999999876654 34443
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.39 E-value=0.00015 Score=58.68 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=35.0
Q ss_pred CCCCcccccccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 41 DPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 41 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
.|..+-.+..++.+.+.+...+.. | ..+..++|.||||+||||+++.+++.++.
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~-------~---~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSL-------G---RIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHH-------T---CCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCccHHHHhCcHHHHHHHHHHHHc-------C---CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 333333344455666666553311 1 12237889999999999999999998754
No 148
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.38 E-value=6e-05 Score=64.08 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
++|.||||+|||++|+.|++.++.+++.+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 77999999999999999999998876654
No 149
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.37 E-value=0.00025 Score=62.25 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=41.7
Q ss_pred cCCccCCCCcccccccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHh------CCCEEec
Q 026804 36 AEPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL------EVPRISM 109 (233)
Q Consensus 36 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~------gl~~Is~ 109 (233)
...+|.|+++ +-.|++.+.+.+.+..... ...+..++|.||||+||||+++.+++.+ +.+++.+
T Consensus 13 l~~~~~p~~~---~gr~~e~~~l~~~l~~~~~-------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 13 LLPDYIPDEL---PHREDQIRKIASILAPLYR-------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp GSSSCCCSCC---TTCHHHHHHHHHSSGGGGG-------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCccCCCCC---CChHHHHHHHHHHHHHHHc-------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 3444555543 3456677777664322111 1234578899999999999999999987 6665544
No 150
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.37 E-value=0.00013 Score=65.44 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
+..++|.||||+|||++|+.|++.++.+++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 34689999999999999999999999887765
No 151
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.35 E-value=0.00018 Score=57.68 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCCcccccccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 42 PDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 42 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
|..+..+..+++..+.+.+.+.. .+...++|.||||+|||++++.+++.+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVER-----------KNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT-----------TCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhC-----------CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33333344455666666553311 112238999999999999999999875
No 152
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.33 E-value=0.00018 Score=61.84 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=26.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
++|+||||+||||+++.|+...+.+.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 899999999999999999999987776653
No 153
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.31 E-value=0.00018 Score=64.52 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=31.3
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhC-------CCEEecchh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE-------VPRISMSSI 112 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~g-------l~~Is~~dl 112 (233)
..+++.|.|+||+||||||+++.|+..++ +..|++++.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 45778999999999999999999999875 345777654
No 154
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00014 Score=67.96 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhHhh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQ 115 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dllr~ 115 (233)
.-|+|.||||+|||.+|+.||..++.+++.+ .+++..
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk 255 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK 255 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS
T ss_pred CCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc
Confidence 3588999999999999999999999987654 455543
No 155
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.29 E-value=0.00014 Score=59.41 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
+++.|+||+||||||+.+.|+..+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 478999999999999999999998754
No 156
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00014 Score=68.47 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhHhh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVRQ 115 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dllr~ 115 (233)
+.-|+|.||||+|||++|+.||..++.+++.+ .+++..
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 34688999999999999999999999987654 455443
No 157
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.28 E-value=0.00016 Score=59.40 Aligned_cols=37 Identities=5% Similarity=-0.088 Sum_probs=28.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC-----CCEEecchhH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE-----VPRISMSSIV 113 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g-----l~~Is~~dll 113 (233)
++..++|.||||+||||+++.+++.++ +.+++..++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 345789999999999999999998864 3456665544
No 158
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.26 E-value=0.00037 Score=55.20 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++-.++|+||+|+||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999999987
No 159
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.24 E-value=0.00024 Score=67.00 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=27.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
-++|.||||+|||++|+.|+...+.+++.+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 388999999999999999999999987655
No 160
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.23 E-value=0.00022 Score=56.52 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=26.1
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
|.++.+.++|+|+|++|+||||+.++|...
T Consensus 1 ~~~~~~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 1 GGSHMKSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CCCCCCEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455678899999999999999999999864
No 161
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.20 E-value=0.0002 Score=64.34 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVR 114 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dllr 114 (233)
..|+|.||||+|||++|+.+++.++.+++.+ .+++.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 4588999999999999999999999877654 45544
No 162
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.20 E-value=0.00035 Score=66.22 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=29.9
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
|....++ ++|.||||+||||+++.|+...+.+++.++
T Consensus 60 g~~ip~G--vLL~GppGtGKTtLaraIa~~~~~~~i~i~ 96 (499)
T 2dhr_A 60 GARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFITAS 96 (499)
T ss_dssp SCCCCSE--EEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCce--EEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3333444 899999999999999999999988776653
No 163
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.19 E-value=0.0004 Score=61.40 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=35.6
Q ss_pred CccCCCCcccccccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 38 PLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 38 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..|.|++ +...|++.+.+...+..... |. +.....++|.||||+||||+++.+++.+
T Consensus 12 ~~~~p~~---l~gr~~~~~~l~~~l~~~~~----~~-~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 12 PSYVPKR---LPHREQQLQQLDILLGNWLR----NP-GHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp TTCCCSC---CTTCHHHHHHHHHHHHHHHH----ST-TSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccCCCC---CCChHHHHHHHHHHHHHHHc----CC-CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3444543 23345666666554322211 11 1122378999999999999999999988
No 164
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.19 E-value=0.00025 Score=62.91 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh-CCCE--EecchhHhh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPR--ISMSSIVRQ 115 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~-gl~~--Is~~dllr~ 115 (233)
+.-++|.||||+|||++|+.+++.+ +.++ ++..+++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 3568899999999999999999998 6655 445555543
No 165
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.17 E-value=0.00027 Score=63.45 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=30.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEe--cchhH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIV 113 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is--~~dll 113 (233)
.+..++|.||||+|||++|+.|++.++.+++. ..+++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~ 154 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT 154 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhh
Confidence 34578999999999999999999999987654 44544
No 166
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.17 E-value=0.00026 Score=62.34 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=36.5
Q ss_pred CCccCCCCcccccccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 37 EPLFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 37 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
...|.|+++ .-.|++.+.+...+..... ...+..++|.||||+||||+++.+++.+
T Consensus 13 ~~~~~p~~~---~gr~~~~~~l~~~l~~~~~-------~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 13 LPDYVPDVL---PHREAELRRLAEVLAPALR-------GEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp STTCCCSCC---TTCHHHHHHHHHTTGGGTS-------SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCccCCCCC---CCHHHHHHHHHHHHHHHHc-------CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 344555442 3346667776664322111 1234578999999999999999999987
No 167
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.17 E-value=0.00022 Score=60.36 Aligned_cols=34 Identities=18% Similarity=0.019 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecch
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSS 111 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~d 111 (233)
.+..|+|+||+|+||||+|..|+++.+ ..|+.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 467899999999999999999999977 7777543
No 168
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.15 E-value=0.00032 Score=65.03 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC--CCEEec
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLE--VPRISM 109 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~g--l~~Is~ 109 (233)
..++|.||||+|||++|+.|++.++ ++++.+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 4689999999999999999999998 776654
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.14 E-value=0.00023 Score=58.60 Aligned_cols=26 Identities=15% Similarity=-0.006 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++..++|+||+||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34578999999999999999999876
No 170
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.14 E-value=0.00031 Score=62.37 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEE
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~I 107 (233)
-.++|.||||+||||+++.|+..++.++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIH 80 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 46889999999999999999999987653
No 171
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.00061 Score=59.60 Aligned_cols=54 Identities=22% Similarity=0.253 Sum_probs=35.7
Q ss_pred ccCCCCcccccccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 39 LFDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 39 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.|.|..+..+.-+++..+.+...+.. | +...++|.||||+||||+++.+++.++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~-------~----~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKS-------A----NLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTC-------T----TCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhc-------C----CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35555444455566667766553211 1 112389999999999999999998853
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.11 E-value=0.00027 Score=61.38 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
..++|.||||+|||++|+.+++.++.+++.+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~~ 69 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4688999999999999999999999877543
No 173
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.00013 Score=65.33 Aligned_cols=44 Identities=7% Similarity=-0.014 Sum_probs=32.2
Q ss_pred ccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 52 ESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 52 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
|+|++.+...+.+... ..++..++|.||||+|||++++.+++.+
T Consensus 26 e~E~~~i~~~L~~~i~-------~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 26 VEDFTRIFLPIYDSLM-------SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHHHHHHH-------TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666554433322 1356789999999999999999999988
No 174
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.10 E-value=0.00028 Score=55.00 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..++|.|+||+|||++|+.|++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999999875
No 175
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.09 E-value=0.00039 Score=62.86 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
+..++|.||||+|||++|+.|++.++.+++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 45799999999999999999999999887654
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.09 E-value=0.00034 Score=56.80 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCE--EecchhH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL---EVPR--ISMSSIV 113 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~---gl~~--Is~~dll 113 (233)
..++|.||||+|||++++.|+... +.+. ++..+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 578899999999999999999887 4443 4554443
No 177
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.07 E-value=0.00035 Score=61.88 Aligned_cols=46 Identities=11% Similarity=0.043 Sum_probs=31.7
Q ss_pred ccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 50 QAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 50 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
-.+++.+.+...+..... + ..+..++|.||||+|||++++.+++.+
T Consensus 24 gr~~~~~~l~~~l~~~~~----~---~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVK----N---EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp TCHHHHHHHHHHHHHHHT----T---CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHc----C---CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345666666553322211 1 233488999999999999999999987
No 178
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=97.03 E-value=0.00024 Score=64.18 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=28.7
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
|++..+++.|+|.|+-||||||+++.|++.++.
T Consensus 1 ~~~~~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 1 GSHMVTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp -CCEEEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 455668899999999999999999999999864
No 179
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.02 E-value=0.00045 Score=59.59 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=23.9
Q ss_pred cCCce-EEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGV-HWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~-~IvliGpPGSGKsTlA~~La~~~ 102 (233)
|.++. .++|.||||+|||++|+.|++.+
T Consensus 43 ~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 43 PNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 33443 68999999999999999999987
No 180
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.97 E-value=0.00056 Score=59.90 Aligned_cols=37 Identities=11% Similarity=-0.124 Sum_probs=28.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh---CCCE--EecchhH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL---EVPR--ISMSSIV 113 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~---gl~~--Is~~dll 113 (233)
.+..++|.||||+||||+++.+++.+ +.++ ++..++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 34568899999999999999999987 6554 4544443
No 181
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.95 E-value=0.00073 Score=59.72 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=34.3
Q ss_pred cCCCCcccccccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 40 FDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 40 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
|.|..+...+.+++..+.+...+. .| +...++|.||||+||||+++.+++.+.
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~-------~g----~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVD-------EG----KLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHH-------TT----CCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHh-------cC----CCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 555554344455555555554221 01 212388999999999999999999863
No 182
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.94 E-value=0.0005 Score=55.13 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQ 115 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~ 115 (233)
+|-.+.|+||+||||||+++.+.. +...++. |.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g 43 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK--PTEVISS-DFCRG 43 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC--GGGEEEH-HHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc--CCeEEcc-HHHHH
Confidence 567899999999999999998543 3444543 33443
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.94 E-value=0.00065 Score=64.03 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
+..++|.||||+||||+|+.+++.+|.+++.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 35789999999999999999999999887754
No 184
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.91 E-value=0.00074 Score=59.69 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCC--CEEec
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEV--PRISM 109 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl--~~Is~ 109 (233)
+..++|.||||+|||++|+.+++.++. +++.+
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~ 103 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAI 103 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCcccc
Confidence 457899999999999999999999974 55443
No 185
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.00098 Score=57.29 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=34.5
Q ss_pred cCCCCcccccccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 40 FDPDNYYSYYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 40 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
|.|..+..+..+++..+.+...+.. | +...++|.||||+|||++++.+++.+
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~-------~----~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD-------G----NMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS-------C----CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc-------C----CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4444433445566666766653211 1 21238999999999999999999986
No 186
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.90 E-value=0.00024 Score=55.38 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
..++|.|+||+|||++|+.|++..+ +++.+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~ 57 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT-PWVSP 57 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS-CEECC
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC-CeEEe
Confidence 3588999999999999999998877 55543
No 187
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.89 E-value=0.00066 Score=62.89 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh-CCCEE--ecchhHhh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL-EVPRI--SMSSIVRQ 115 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~-gl~~I--s~~dllr~ 115 (233)
+.-++|.||||+|||++|+.|+..+ +.+++ +..+++..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 3578899999999999999999998 66554 44555543
No 188
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.89 E-value=0.00047 Score=60.50 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
.++|.||||+|||++|+.|++.++.+++.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~ 76 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHR 76 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 68899999999999999999999887654
No 189
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.89 E-value=0.00059 Score=54.25 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=23.2
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
|+.+.+.++|+|+|++|+||||+..+|...
T Consensus 1 g~~~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 1 GSNQNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 344567789999999999999999999875
No 190
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.87 E-value=0.00076 Score=59.96 Aligned_cols=29 Identities=28% Similarity=0.218 Sum_probs=25.8
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
..++..+.|+||+||||||+++.|+..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45788999999999999999999998763
No 191
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.87 E-value=0.00057 Score=57.08 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.++|+||+||||||+.+.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356688999999999999999999876
No 192
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.86 E-value=0.00073 Score=64.32 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
++..++|+||||+||||+++.|+..++.+.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 566899999999999999999999998765443
No 193
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.85 E-value=0.00071 Score=55.67 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=24.4
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
..++-.+.|+||+||||||+.+.|+..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34567899999999999999999998874
No 194
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.85 E-value=0.00091 Score=51.74 Aligned_cols=27 Identities=19% Similarity=0.049 Sum_probs=23.6
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+.++|+|+|++|+||||+..+|...
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999999754
No 195
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.84 E-value=0.0011 Score=56.83 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++|.||||+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 38999999999999999999986
No 196
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.84 E-value=0.00079 Score=61.62 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=28.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
.++..++|.|||||||||+++.|+..++...+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 355689999999999999999999998766555
No 197
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.83 E-value=0.00073 Score=57.00 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.+|-.++|+||.||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4677899999999999999999998764
No 198
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.001 Score=57.31 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.++|.||||+||||+++.+++.++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999863
No 199
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.001 Score=58.51 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~ 102 (233)
++|.||||+||||+++.|++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999964
No 200
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.81 E-value=0.00064 Score=67.95 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=30.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIVR 114 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dllr 114 (233)
+.-|+|.||||+|||++|+.+|..+|.+++.+ .+++.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 44689999999999999999999999987654 35543
No 201
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.81 E-value=0.00085 Score=62.49 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
..++|.||||+||||+|+.|++.++.+++.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 46899999999999999999999998776653
No 202
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.80 E-value=0.00064 Score=56.21 Aligned_cols=30 Identities=27% Similarity=0.144 Sum_probs=25.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC--EEecch
Q 026804 81 WAFIGSPRAKKHVYAEMLSKLLEVP--RISMSS 111 (233)
Q Consensus 81 IvliGpPGSGKsTlA~~La~~~gl~--~Is~~d 111 (233)
++|+|++|||||++|..|++. +.+ ||.+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 765 555544
No 203
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.78 E-value=0.0011 Score=57.82 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEEec
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRISM 109 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~Is~ 109 (233)
..+++.||||+|||++++.+++.++.+++.+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3566778899999999999999998776654
No 204
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.78 E-value=0.0012 Score=58.14 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
..++|.||||+||||+++.+++.++.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36789999999999999999999864
No 205
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.77 E-value=0.00082 Score=55.04 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=24.2
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
-.++-.+.|+||+||||||+++.|+..+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3466789999999999999999998854
No 206
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.76 E-value=0.00083 Score=55.73 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=22.0
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLS 99 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La 99 (233)
-.++-.+.|+||+||||||+++.|+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3466789999999999999999988
No 207
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.74 E-value=0.00097 Score=51.29 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|++||||||+...|...
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence 45689999999999999999999864
No 208
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.74 E-value=0.0011 Score=51.63 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=24.1
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.+.++|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999999999875
No 209
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.73 E-value=0.001 Score=50.82 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.++|+|+|+||+||||+...|...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999999998764
No 210
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.73 E-value=0.0012 Score=61.56 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..++|+||||+|||++++.|++.+
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999997
No 211
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.71 E-value=0.0011 Score=52.92 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=24.4
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.+.++|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999999999864
No 212
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.70 E-value=0.0012 Score=51.51 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=23.5
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+.++|+|+|+||+||||+..+|...
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999999999754
No 213
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.69 E-value=0.0011 Score=50.44 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.++|+|+|++|+||||+...|...
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999765
No 214
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.69 E-value=0.0012 Score=53.95 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++-.++|+|+|||||||+++.|+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56688999999999999999998653
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.68 E-value=0.0012 Score=53.65 Aligned_cols=35 Identities=20% Similarity=0.100 Sum_probs=27.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC--CCEEecc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE--VPRISMS 110 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g--l~~Is~~ 110 (233)
.++-.++|.|+|||||||++..|+...+ +.+++..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 4667899999999999999999987444 3455543
No 216
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.68 E-value=0.0013 Score=52.79 Aligned_cols=29 Identities=7% Similarity=-0.020 Sum_probs=24.2
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+.+.++|+|+|.+|+||||+..++...
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567799999999999999999887664
No 217
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.66 E-value=0.0011 Score=51.63 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=23.3
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.|.+.++|+|+|++|+||||+..+|...
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567789999999999999999999753
No 218
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.66 E-value=0.001 Score=51.81 Aligned_cols=28 Identities=11% Similarity=0.038 Sum_probs=23.2
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
...+.++|+|+|++|+||||+..+|...
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999998643
No 219
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.65 E-value=0.0016 Score=51.32 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|++|+||||+..+|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999999999875
No 220
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.64 E-value=0.0012 Score=62.20 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=29.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEec--chhH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISM--SSIV 113 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~--~dll 113 (233)
+.-++|.||||+|||++|+.|++..+.+++.+ .++.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 34689999999999999999999998877654 4544
No 221
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.64 E-value=0.0014 Score=50.18 Aligned_cols=25 Identities=12% Similarity=-0.071 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.++|+|+|.+|+||||+...|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 5689999999999999999999765
No 222
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.61 E-value=0.0014 Score=55.63 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
..++|.|+||+|||++|+.|++..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4688999999999999999998864
No 223
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.61 E-value=0.0011 Score=50.88 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=23.5
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.+.++|+|+|.+|+||||+..+|...
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999999999864
No 224
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.61 E-value=0.00096 Score=56.65 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCEE
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVPRI 107 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~~I 107 (233)
-.++|.||||+||||+|..|++.++-..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 35899999999999999999999864433
No 225
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.59 E-value=0.0012 Score=54.58 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.++-.+.|+|||||||||++..|+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 46678999999999999999999884
No 226
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.57 E-value=0.0028 Score=56.21 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++..|+|+|++||||||++..|+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 456789999999999999999999876
No 227
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.57 E-value=0.0015 Score=53.36 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++..+++.|+|||||||++..++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999998887765
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.57 E-value=0.003 Score=55.85 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=25.0
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..+|-.+.|+||.||||||+++.|+..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3467799999999999999999999876
No 229
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.56 E-value=0.0016 Score=53.26 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+...+.|.|++||||||++..|...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578899999999999999998875
No 230
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.56 E-value=0.0015 Score=50.88 Aligned_cols=26 Identities=8% Similarity=0.035 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|++||||||+..+|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45689999999999999999998764
No 231
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.56 E-value=0.0016 Score=49.95 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.++|+|+|.+|+||||+..+|...
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999999764
No 232
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.55 E-value=0.0015 Score=51.96 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=22.8
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
....+.++|+|+|.+|+||||+..+|...
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcC
Confidence 44567789999999999999999999754
No 233
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.54 E-value=0.0016 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+..+|+|+|+||+||||+.++|...
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999863
No 234
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.53 E-value=0.0014 Score=65.47 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=32.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc--hhHhhcC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS--SIVRQDL 117 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~--dllr~~i 117 (233)
+..++|.||||+|||.+|+.+|...+.+++++. +++...+
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTC
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcccc
Confidence 345789999999999999999999999988764 6665443
No 235
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.52 E-value=0.0013 Score=65.59 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
.+..++|.|||||||||+|+.|+..++.+++.++
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 4557999999999999999999999988776553
No 236
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.52 E-value=0.0016 Score=50.46 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.++|+|+|+||+||||+..+|...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 5679999999999999999999754
No 237
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.51 E-value=0.0018 Score=63.38 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=30.5
Q ss_pred cCCce-EEEEEcCCCCCHHHHHHHHHHHhCCCEE--ecchhH
Q 026804 75 RRRGV-HWAFIGSPRAKKHVYAEMLSKLLEVPRI--SMSSIV 113 (233)
Q Consensus 75 ~~~~~-~IvliGpPGSGKsTlA~~La~~~gl~~I--s~~dll 113 (233)
|.++. .++|.||||+|||++|+.|++.++.+++ +++++.
T Consensus 484 ~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~ 525 (758)
T 1r6b_X 484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_dssp TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhc
Confidence 44444 6899999999999999999999987654 554543
No 238
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.51 E-value=0.0017 Score=52.36 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..++++|+|++||||||+.+.|+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34789999999999999999998753
No 239
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.49 E-value=0.0016 Score=50.12 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+.++|+|+|++|+||||+...|....
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence 356899999999999999999997654
No 240
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.48 E-value=0.0017 Score=50.06 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|++|+||||+..+|...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45689999999999999999999865
No 241
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.48 E-value=0.0023 Score=51.02 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=24.1
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.+.++|+|+|.+|+||||+..+|...
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999999999764
No 242
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.48 E-value=0.0013 Score=51.54 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
.+.++|+|+|++|+||||+..+|..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5779999999999999999999863
No 243
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.46 E-value=0.0018 Score=53.45 Aligned_cols=35 Identities=9% Similarity=0.047 Sum_probs=26.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~ 110 (233)
.++-.++|.|+|||||||++..++... ++.+++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 456689999999999999998887643 34456654
No 244
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.46 E-value=0.0019 Score=50.56 Aligned_cols=26 Identities=8% Similarity=0.094 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999999754
No 245
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.45 E-value=0.0023 Score=59.16 Aligned_cols=35 Identities=9% Similarity=0.047 Sum_probs=27.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh-----CCCE--Eecchh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL-----EVPR--ISMSSI 112 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~-----gl~~--Is~~dl 112 (233)
+..++|.||||+||||+++.++..+ +.+. ++..++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 4578999999999999999999977 5544 454444
No 246
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.45 E-value=0.0021 Score=51.45 Aligned_cols=28 Identities=11% Similarity=-0.080 Sum_probs=23.8
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.+.++|+|+|++||||||+...|...
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999999999764
No 247
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.44 E-value=0.0019 Score=52.08 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.++++|+|++||||||+.+.|+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 478999999999999999999875
No 248
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.44 E-value=0.0022 Score=62.97 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+..++|.||||+|||++|+.|++.+
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999997
No 249
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.43 E-value=0.0019 Score=50.47 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=23.2
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.+.++|+|+|++|+||||+..+|...
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999999999764
No 250
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.43 E-value=0.0018 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
-++.|+|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368899999999999999999887
No 251
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0018 Score=49.84 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.++|+|+|++|+||||+...|...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999999763
No 252
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.43 E-value=0.0019 Score=50.76 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+.++|+|+|++|+||||+...|....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC
Confidence 56899999999999999999998653
No 253
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.43 E-value=0.0019 Score=51.24 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+.++|+|+|.+|+||||+...|....
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCC
Confidence 466899999999999999999998653
No 254
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.42 E-value=0.0011 Score=58.08 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.++|.||||+|||++|+.|++.++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 389999999999999999999886
No 255
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.42 E-value=0.0022 Score=50.38 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=23.6
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+.++|+|+|++|+||||+..+|...
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 345689999999999999999999864
No 256
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.41 E-value=0.0019 Score=50.27 Aligned_cols=26 Identities=8% Similarity=-0.031 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|+||+||||+..+|...
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcC
Confidence 45689999999999999999999754
No 257
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.41 E-value=0.0024 Score=57.19 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||+||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999876
No 258
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.41 E-value=0.0017 Score=51.45 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=22.3
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+.+.++|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 34557799999999999999999999754
No 259
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.40 E-value=0.002 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++.+|+|+|+||+||||+..+|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999999864
No 260
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.40 E-value=0.0022 Score=51.05 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=24.0
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
|.+.++|+|+|++|+||||+..+|...
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 457789999999999999999999765
No 261
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0023 Score=50.84 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+.++|+|+|++||||||+...|....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466899999999999999999998753
No 262
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.38 E-value=0.0022 Score=50.08 Aligned_cols=27 Identities=11% Similarity=-0.095 Sum_probs=22.7
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.+.++|+|+|++|+||||+...|...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhC
Confidence 345689999999999999999999864
No 263
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.37 E-value=0.0021 Score=49.35 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.++|+|+|++|+||||+..+|...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999998754
No 264
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.36 E-value=0.0024 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++|+|+|++|+||||+..+|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998753
No 265
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.36 E-value=0.0024 Score=49.73 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=23.4
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+.++|+|+|++|+||||+..+|...
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999999999763
No 266
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.35 E-value=0.0025 Score=49.85 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..++...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999764
No 267
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.35 E-value=0.0022 Score=51.64 Aligned_cols=27 Identities=15% Similarity=-0.016 Sum_probs=23.1
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+.++|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 456789999999999999999999865
No 268
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.34 E-value=0.0024 Score=51.24 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=23.1
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..+.++|+|+|++|+||||+..+|....
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3466899999999999999999997653
No 269
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.33 E-value=0.0031 Score=50.54 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-.+.|+||.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456689999999999999999999987
No 270
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.32 E-value=0.0025 Score=55.00 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-.++|+|+|||||||+++.|+...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999988765
No 271
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.32 E-value=0.0025 Score=48.99 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.++|+|+|++|+||||+..+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 478999999999999999999754
No 272
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.30 E-value=0.0021 Score=50.68 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.+.++|+|+|.||+||||+.+.|...+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4568999999999999999998887653
No 273
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.30 E-value=0.003 Score=49.59 Aligned_cols=27 Identities=7% Similarity=0.006 Sum_probs=23.7
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+.++|+|+|.+|+||||+..+|...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345689999999999999999999865
No 274
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.30 E-value=0.0026 Score=56.58 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-++.|+||+||||||+++.|+.-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456689999999999999999999887
No 275
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.29 E-value=0.0029 Score=55.99 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++-.+.|+||.||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999876
No 276
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.29 E-value=0.0033 Score=61.75 Aligned_cols=42 Identities=26% Similarity=0.470 Sum_probs=31.6
Q ss_pred ccCCce-EEEEEcCCCCCHHHHHHHHHHHh---CCC--EEecchhHhh
Q 026804 74 ERRRGV-HWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMSSIVRQ 115 (233)
Q Consensus 74 ~~~~~~-~IvliGpPGSGKsTlA~~La~~~---gl~--~Is~~dllr~ 115 (233)
.|.++. .++|.||||+|||++|+.|++.+ +.+ .|+++++...
T Consensus 516 ~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 516 DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK 563 (758)
T ss_dssp CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence 345555 69999999999999999999997 344 4566665543
No 277
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.29 E-value=0.0013 Score=59.17 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.+++.|+|.|+-||||||+++.|++.++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999999999875
No 278
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.28 E-value=0.0026 Score=52.98 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
-+|.+++.|+||||||++|..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3578899999999999999886433
No 279
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.27 E-value=0.0029 Score=51.45 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+.++|+|+|++|+||||+..+|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999998764
No 280
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.27 E-value=0.0052 Score=55.81 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=25.1
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..+|-.+.|+||.||||||+++.|+..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4467899999999999999999999876
No 281
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.27 E-value=0.0032 Score=51.37 Aligned_cols=26 Identities=15% Similarity=0.127 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+..+|+|+|.+||||||+..+|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998875
No 282
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0024 Score=50.46 Aligned_cols=27 Identities=11% Similarity=0.008 Sum_probs=23.7
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.+.++|+|+|++|+||||+..+|...
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcC
Confidence 445689999999999999999999765
No 283
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.25 E-value=0.0026 Score=48.94 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~ 100 (233)
.++|+|+|.||+||||+.++|..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEEECCCCCCHHHHHHHHcC
Confidence 36899999999999999999864
No 284
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.25 E-value=0.0029 Score=49.35 Aligned_cols=27 Identities=7% Similarity=0.011 Sum_probs=23.5
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.+.++|+|+|.+|+||||+..+|...
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhC
Confidence 345689999999999999999999764
No 285
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.25 E-value=0.0021 Score=51.18 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~ 100 (233)
++|+|+|+||+||||+.++|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999986
No 286
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.25 E-value=0.0033 Score=51.47 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+..+|+|+|.+||||||+..+|+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 287
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.0032 Score=50.44 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999999999865
No 288
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.23 E-value=0.0029 Score=48.81 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~ 100 (233)
++|+|+|+||+||||+..+|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999964
No 289
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.22 E-value=0.0032 Score=48.82 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+.++|+|+|.+|+||||+..+|...-
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 456899999999999999999998653
No 290
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.22 E-value=0.0013 Score=65.46 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEe--cchhHhh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS--MSSIVRQ 115 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is--~~dllr~ 115 (233)
.+..++|.||||+||||+|+.|+..++.+++. ..+++..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 34568899999999999999999999876654 4455443
No 291
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=96.22 E-value=0.0018 Score=59.31 Aligned_cols=29 Identities=14% Similarity=-0.007 Sum_probs=24.2
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
+.+++.|+|.|+-||||||+++.|++.++
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35788999999999999999999999875
No 292
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.22 E-value=0.0039 Score=52.31 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=25.0
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+..+...+++.|.+|+||||++..|+..+
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 34567889999999999999999999665
No 293
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.20 E-value=0.0021 Score=51.73 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=22.6
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..+.+.++|+|+|.+|+||||+.+++..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 345677899999999999999999887754
No 294
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.20 E-value=0.0027 Score=56.56 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=31.5
Q ss_pred cccccchhHHhhhc-cccccccccCcccCCceEEEE--EcCCCCCHHHHHHHHHHHh
Q 026804 49 YQAESDSDQHRDSL-RSVTLPDTEGRERRRGVHWAF--IGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 49 ~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Ivl--iGpPGSGKsTlA~~La~~~ 102 (233)
...|++.+.+.+.+ ..... | ....+..++| .|+||+||||+++.+++.+
T Consensus 25 ~gR~~el~~l~~~l~~~~~~----~-~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 25 RVRRGEAEALARIYLNRLLS----G-AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SSSCHHHHHHHHHHHHHHHT----S-SCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhHHHhc----C-CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 34466777776643 22211 1 0013346677 8999999999999998876
No 295
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.20 E-value=0.0027 Score=49.76 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.++|+|+|.+|+||||+..+|...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 5689999999999999999999854
No 296
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.19 E-value=0.0032 Score=49.97 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|++|+||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999999999764
No 297
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.19 E-value=0.0035 Score=49.69 Aligned_cols=26 Identities=12% Similarity=0.012 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
...++|+|+|++|+||||+..+|...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 45689999999999999999999864
No 298
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.18 E-value=0.0032 Score=50.28 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=22.7
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.+.++|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 356789999999999999999998764
No 299
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.17 E-value=0.0036 Score=49.14 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|++||||||+..+|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 45689999999999999999999764
No 300
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.17 E-value=0.0052 Score=53.14 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
.++|.|++|+|||++++.+++..+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~ 57 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLP 57 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 78899999999999999999987543
No 301
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.17 E-value=0.0027 Score=56.98 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
+-++.|+|++||||||+++.|+..++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6689999999999999999999998754
No 302
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.17 E-value=0.0035 Score=55.20 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++..++|+|++||||||++..|+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998765
No 303
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.17 E-value=0.0035 Score=50.48 Aligned_cols=28 Identities=11% Similarity=0.008 Sum_probs=22.0
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
...+.++|+|+|+||+||||+...|...
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999999999754
No 304
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.16 E-value=0.0018 Score=52.29 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.++.+++|+|++||||||+.+.|+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999988654
No 305
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.16 E-value=0.0033 Score=50.06 Aligned_cols=27 Identities=7% Similarity=0.271 Sum_probs=23.6
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+.++|+|+|.+|+||||+..+|...
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999999999754
No 306
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.15 E-value=0.0063 Score=57.77 Aligned_cols=40 Identities=10% Similarity=0.112 Sum_probs=30.1
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh----CCCEEecchhHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL----EVPRISMSSIVR 114 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~----gl~~Is~~dllr 114 (233)
..++-.|.|+|+.||||||+++.|+..+ |-..+.-.|.++
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 4567899999999999999999999876 333444345443
No 307
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.14 E-value=0.004 Score=53.74 Aligned_cols=26 Identities=8% Similarity=0.000 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++-.++|+||.||||||+.+.|+..+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999999999999998876
No 308
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.14 E-value=0.0037 Score=47.92 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|.+|+||||+..+|...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999764
No 309
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.13 E-value=0.0037 Score=50.27 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=22.1
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.+.++|+|+|.+|+||||+..+|...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999999999754
No 310
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.12 E-value=0.003 Score=49.40 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.||+||||+..++...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35689999999999999999999864
No 311
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.12 E-value=0.0033 Score=49.95 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=22.4
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+....+|+|+|.+|+||||+..+|...
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4456789999999999999999998654
No 312
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.11 E-value=0.0037 Score=50.23 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
.+.++|+|+|++|+||||+..+|..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999999999864
No 313
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.11 E-value=0.0036 Score=49.32 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
...++|+|+|++|+||||+..+|...-
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 345799999999999999999997653
No 314
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.10 E-value=0.0034 Score=50.35 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+..+|+|+|+||+||||+..+|...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999999999863
No 315
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.10 E-value=0.0038 Score=55.05 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhC----CC--EEecchhHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLLE----VP--RISMSSIVR 114 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~g----l~--~Is~~dllr 114 (233)
+..++|.||||+|||++|..|+..+. .+ +++..+++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~ 194 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI 194 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHH
Confidence 45789999999999999999987543 44 355555543
No 316
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.09 E-value=0.0038 Score=50.00 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=21.5
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.+.++|+|+|.+|+||||+..+|...
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999999998754
No 317
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.07 E-value=0.0043 Score=55.48 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++.++.|+|+|||||||+.+.|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 467799999999999999999998654
No 318
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.07 E-value=0.0039 Score=49.20 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+.++|+|+|+||+||||+..+|...-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997543
No 319
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0036 Score=50.07 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=23.4
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+.++|+|+|++|+||||+..+|...
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcC
Confidence 356789999999999999999999765
No 320
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.06 E-value=0.0045 Score=50.43 Aligned_cols=25 Identities=20% Similarity=0.025 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
...++|.|++||||||+.+.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3478899999999999999998864
No 321
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.06 E-value=0.0038 Score=51.05 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=23.0
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+.++|+|+|++|+||||+..+|...
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 346689999999999999999999875
No 322
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.06 E-value=0.0038 Score=49.79 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=23.5
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+.++|+|+|.+|+||||+..+|...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999999999875
No 323
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.05 E-value=0.0035 Score=53.85 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-.++|+|+|||||||++..++...
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367789999999999999999988643
No 324
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.03 E-value=0.0051 Score=48.81 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 45689999999999999999999765
No 325
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.02 E-value=0.0044 Score=49.88 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|++|+||||+..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 45689999999999999999999764
No 326
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.02 E-value=0.0046 Score=49.00 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999853
No 327
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.01 E-value=0.0047 Score=55.36 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+..+|+|+|+||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998876
No 328
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.98 E-value=0.0053 Score=48.73 Aligned_cols=26 Identities=12% Similarity=0.000 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+...|...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 35689999999999999999999763
No 329
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.98 E-value=0.0046 Score=51.73 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=22.1
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.|.|.++|+|+|.+|+|||++..++...
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhC
Confidence 5778899999999999999999998754
No 330
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.97 E-value=0.005 Score=55.24 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+.+|.|+|+|||||||+...|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999998754
No 331
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.97 E-value=0.0037 Score=54.04 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=36.2
Q ss_pred ccccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecc
Q 026804 48 YYQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMS 110 (233)
Q Consensus 48 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~ 110 (233)
|+..|++.+.+.+.+.. | ..++|.|++|+||||+++.+++..++.+++..
T Consensus 14 ~~gR~~el~~L~~~l~~-------~------~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 14 IFDREEESRKLEESLEN-------Y------PLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp SCSCHHHHHHHHHHHHH-------C------SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred cCChHHHHHHHHHHHhc-------C------CeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence 34456677776653311 1 37889999999999999999999876666653
No 332
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.97 E-value=0.0041 Score=62.05 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=27.1
Q ss_pred cCCce-EEEEEcCCCCCHHHHHHHHHHHh---CCCEEe
Q 026804 75 RRRGV-HWAFIGSPRAKKHVYAEMLSKLL---EVPRIS 108 (233)
Q Consensus 75 ~~~~~-~IvliGpPGSGKsTlA~~La~~~---gl~~Is 108 (233)
|.++. .++|.||||+|||++|+.|++.+ +.+++.
T Consensus 584 ~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~ 621 (854)
T 1qvr_A 584 PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIR 621 (854)
T ss_dssp SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEE
Confidence 44554 78999999999999999999988 545443
No 333
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0051 Score=49.00 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
...++|+|+|.+|+||||+..+|...-
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 356899999999999999999998764
No 334
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.93 E-value=0.0057 Score=51.93 Aligned_cols=27 Identities=19% Similarity=-0.103 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++..+++.|+||+||||.+-.++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 467799999999999999999998887
No 335
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.93 E-value=0.0047 Score=50.00 Aligned_cols=27 Identities=15% Similarity=-0.022 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+.++|+|+|.+|+||||+..+|....
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999999999999998653
No 336
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.91 E-value=0.0048 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.++|+|+|+|||||||+...|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999764
No 337
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.91 E-value=0.004 Score=52.82 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456689999999999999999998655
No 338
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.90 E-value=0.0057 Score=50.47 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=22.3
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHH
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
+-.++-.++|.|+||+|||++|..++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 334677899999999999999988754
No 339
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.90 E-value=0.0047 Score=51.54 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+.++|+|+|++|+||||+...|....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 456899999999999999999998653
No 340
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.90 E-value=0.0045 Score=48.64 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++|+|+|.+|+||||+..+|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 57999999999999999999764
No 341
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.90 E-value=0.0047 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
.+..+|+|+|+||+||||+..+|..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999964
No 342
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.89 E-value=0.0051 Score=50.18 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=23.5
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..+.++|+|+|.+|+||||+..+|...
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhC
Confidence 346689999999999999999998764
No 343
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.89 E-value=0.0044 Score=61.83 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..++|+||||+|||++++.|++.+
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999987
No 344
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.89 E-value=0.0051 Score=57.30 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++..|+|+|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999766
No 345
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.89 E-value=0.006 Score=53.55 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---C--CCEEecch
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSS 111 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~---g--l~~Is~~d 111 (233)
..++|.|+||+|||++|+.|++.. + +..++...
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 468899999999999999999854 3 34555443
No 346
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.88 E-value=0.005 Score=50.33 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999999753
No 347
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.005 Score=49.86 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=23.4
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.+.++|+|+|.+|+||||+..+|...
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 345679999999999999999999864
No 348
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.85 E-value=0.0056 Score=49.63 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..++...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 46789999999999999999998864
No 349
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.85 E-value=0.0056 Score=49.04 Aligned_cols=25 Identities=12% Similarity=0.028 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..++|+|+|++|+||||+..+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999999764
No 350
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.84 E-value=0.0066 Score=53.11 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
-.++|.||||+|||++|..|+..+++
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 35999999999999999999997654
No 351
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.83 E-value=0.0035 Score=59.35 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
..++|.||||+|||++|+.|++..+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3789999999999999999999874
No 352
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.82 E-value=0.0044 Score=52.13 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355688999999999999999998654
No 353
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.82 E-value=0.0052 Score=55.20 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=25.3
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.-.++-.+.|+|+|||||||++..|+...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34477789999999999999999999876
No 354
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.80 E-value=0.0044 Score=49.21 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=22.7
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..+.++|+|+|.+|+||||+..+|....
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999999997654
No 355
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.80 E-value=0.0059 Score=49.20 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
...++|+|+|.+|+||||+..+|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 45689999999999999999999864
No 356
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.79 E-value=0.0057 Score=49.47 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 45689999999999999999999754
No 357
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.79 E-value=0.0049 Score=52.36 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998654
No 358
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.76 E-value=0.007 Score=48.89 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.||+||||+..+|...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 45689999999999999999999864
No 359
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.75 E-value=0.0066 Score=56.75 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++..|+|.|+|||||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999766
No 360
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.75 E-value=0.0063 Score=52.79 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+++.|+||+||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999876
No 361
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.75 E-value=0.0054 Score=52.56 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=23.2
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
|.+.++|+|+|.|||||||+...|...
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCC
Confidence 456789999999999999999999763
No 362
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.74 E-value=0.0063 Score=51.31 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+.++|+|+|.|||||||+..+|...-
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence 456899999999999999999997643
No 363
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.73 E-value=0.0063 Score=54.89 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh--CCCEEec
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL--EVPRISM 109 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~--gl~~Is~ 109 (233)
++-.++|.||||+|||++|..++... .+.++++
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 34467899999999999999998764 4567877
No 364
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.73 E-value=0.0069 Score=49.63 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 46789999999999999999999765
No 365
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.72 E-value=0.0062 Score=48.71 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34688999999999999999998643
No 366
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.72 E-value=0.0058 Score=49.29 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 45689999999999999999998743
No 367
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.71 E-value=0.007 Score=54.91 Aligned_cols=37 Identities=16% Similarity=0.038 Sum_probs=28.6
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh---C--CCEEecch
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL---E--VPRISMSS 111 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~---g--l~~Is~~d 111 (233)
-.++-.+.|.|||||||||++..++... + +.+|+..+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 3467789999999999999999998764 3 34666544
No 368
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.70 E-value=0.0059 Score=53.54 Aligned_cols=26 Identities=12% Similarity=-0.095 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.++-.++|.|+||+|||++|..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36678999999999999999999865
No 369
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.70 E-value=0.0076 Score=53.71 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++.+|.|+|+||+||||+...|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999998765
No 370
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.68 E-value=0.0059 Score=51.92 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466689999999999999999998765
No 371
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.68 E-value=0.0056 Score=52.84 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998765
No 372
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.68 E-value=0.0052 Score=48.64 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
.+.++|+|+|.+|+||||+..+|..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3678999999999999999999853
No 373
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.67 E-value=0.0053 Score=49.61 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
+.++|+|+|.||+||||+..+|..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 458999999999999999999853
No 374
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.67 E-value=0.0082 Score=48.35 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.++|+|+|.||+||||+..++...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999854
No 375
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.66 E-value=0.0047 Score=51.61 Aligned_cols=25 Identities=12% Similarity=-0.074 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++-.+.|+||.||||||+.+.|+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999999864
No 376
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.66 E-value=0.0062 Score=51.96 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
-.+.|+||.||||||+.+.|+.-+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999998765
No 377
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.66 E-value=0.0043 Score=48.70 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=11.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..++|+|+|.+|+||||+..+|...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999999998754
No 378
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.66 E-value=0.0034 Score=50.96 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.+.|+|++||||||+++.|...+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999998873
No 379
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.64 E-value=0.006 Score=48.50 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 35689999999999999999999865
No 380
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.63 E-value=0.0082 Score=54.40 Aligned_cols=27 Identities=7% Similarity=0.011 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
++-.++|+||+||||||+.+.|+..+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 455799999999999999999988763
No 381
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.62 E-value=0.0071 Score=51.68 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+|-.+.|+||.||||||+.+.|+.-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35668999999999999999999874
No 382
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.61 E-value=0.0057 Score=53.38 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 356689999999999999999998765
No 383
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.61 E-value=0.0091 Score=53.32 Aligned_cols=27 Identities=15% Similarity=-0.022 Sum_probs=24.0
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
-.++-.+.|.|+|||||||+|..++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 446778999999999999999999886
No 384
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.61 E-value=0.006 Score=52.84 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356689999999999999999998755
No 385
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.61 E-value=0.006 Score=52.16 Aligned_cols=28 Identities=11% Similarity=0.336 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.+|-.+.|+||.||||||+.+.|+.-+.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3566899999999999999999987653
No 386
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.59 E-value=0.0083 Score=49.48 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999999998754
No 387
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=95.59 E-value=0.0045 Score=56.01 Aligned_cols=29 Identities=17% Similarity=0.038 Sum_probs=26.3
Q ss_pred CCceEEEEEcCCCCCHHHHH-HHHHHHhCC
Q 026804 76 RRGVHWAFIGSPRAKKHVYA-EMLSKLLEV 104 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA-~~La~~~gl 104 (233)
.+++.|+|-|+-||||||++ +.|++.++-
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 46789999999999999999 999998864
No 388
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.59 E-value=0.0075 Score=48.90 Aligned_cols=26 Identities=8% Similarity=0.037 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcC
Confidence 46689999999999999999999754
No 389
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.59 E-value=0.0061 Score=52.30 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356689999999999999999998765
No 390
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.59 E-value=0.0063 Score=52.71 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 456689999999999999999998765
No 391
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.58 E-value=0.0077 Score=52.08 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+|-.+.|+||.||||||+.+.|+.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45668999999999999999999875
No 392
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.58 E-value=0.0092 Score=54.09 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.+.++|+|+|.+||||||+++.+.--++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~~ 58 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIHG 58 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 5678999999999999999999965553
No 393
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.58 E-value=0.0064 Score=52.75 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.+|-.+.|+||.||||||+.+.|+.-+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4566899999999999999999987653
No 394
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.58 E-value=0.0063 Score=51.71 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355689999999999999999998765
No 395
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.57 E-value=0.0065 Score=52.33 Aligned_cols=28 Identities=21% Similarity=0.422 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.+|-.+.|+||.||||||+.+.|+.-+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4566899999999999999999987653
No 396
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.57 E-value=0.0068 Score=49.48 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=24.1
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHH-HHHHh
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEM-LSKLL 102 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~-La~~~ 102 (233)
.+.+.++|+|+|.+||||||+..+ +...+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 345678999999999999999999 55554
No 397
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.56 E-value=0.01 Score=58.07 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++..++|+|+||+|||++++.|++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999987
No 398
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.55 E-value=0.0065 Score=51.25 Aligned_cols=28 Identities=36% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.+|-.+.|+||.||||||+.+.|+..+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3566899999999999999999987653
No 399
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.54 E-value=0.0096 Score=52.99 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=24.4
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..++..|.|+|++|+||||++..|+..+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998876
No 400
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.52 E-value=0.006 Score=51.25 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355688999999999999999998765
No 401
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.50 E-value=0.011 Score=50.55 Aligned_cols=33 Identities=9% Similarity=-0.084 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh---CCC--EEecc
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL---EVP--RISMS 110 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~---gl~--~Is~~ 110 (233)
.++|++.|+||+||||++-.++..+ |.. .++++
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 3789999999999999988888765 543 44553
No 402
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.50 E-value=0.007 Score=56.18 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++..|+|+|+||+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 403
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.49 E-value=0.0073 Score=55.55 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=23.6
Q ss_pred cccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 73 RERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 73 ~~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..-.++-.+.|+|+|||||||++..|+-.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 33446678999999999999999988643
No 404
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.48 E-value=0.014 Score=49.88 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
...++|+|+|.||+||||+...|...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 35579999999999999999999764
No 405
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.48 E-value=0.01 Score=52.42 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
.-++|.||||+|||++|+.+++.++..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 468999999999999999999998654
No 406
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.47 E-value=0.0074 Score=52.02 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998765
No 407
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.46 E-value=0.012 Score=48.69 Aligned_cols=27 Identities=11% Similarity=-0.082 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++..+++.|++||||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356789999999999999999999987
No 408
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.45 E-value=0.0087 Score=50.71 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.||+||||+...|...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCC
Confidence 45689999999999999999998754
No 409
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.44 E-value=0.0073 Score=57.95 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
..++|+||||+||||+|+.|+..++
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999999875
No 410
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.42 E-value=0.0075 Score=52.65 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+||.||||||+.+.|+..+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456689999999999999999998765
No 411
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.0097 Score=48.79 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcC
Confidence 45689999999999999999999764
No 412
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.41 E-value=0.0069 Score=54.58 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
++-.++|+||.||||||+.+.|+..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456899999999999999999998874
No 413
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.41 E-value=0.0077 Score=51.71 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356689999999999999999998654
No 414
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.41 E-value=0.0099 Score=53.49 Aligned_cols=36 Identities=17% Similarity=0.028 Sum_probs=28.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecch
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS 111 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~d 111 (233)
.++-.+.|.|+|||||||+|..++... .+.+|++..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 366789999999999999999998654 345666643
No 415
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.41 E-value=0.008 Score=51.88 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456689999999999999999998765
No 416
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.38 E-value=0.012 Score=48.64 Aligned_cols=31 Identities=10% Similarity=-0.018 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
.+.=++|.|++|+||||+|..|.++ |...|+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lva 45 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLVC 45 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEec
Confidence 3557899999999999999999885 776665
No 417
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.33 E-value=0.011 Score=55.95 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++.+|+|+|+|||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999765
No 418
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.32 E-value=0.012 Score=51.91 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-.++|.|+||+||||+|..++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 356789999999999999999998764
No 419
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.32 E-value=0.0084 Score=51.50 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356689999999999999999998765
No 420
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.011 Score=49.09 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
.+.++|+|+|.||+||||+..++..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999974
No 421
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.20 E-value=0.0036 Score=49.96 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=7.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEEC-----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 45689999999999999999998765
No 422
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.18 E-value=0.015 Score=52.57 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++|+||+||||||+.+.|+..+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 88999999999999999998765
No 423
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.01 Score=55.45 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+||.||||||+++.|+..+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 367799999999999999999998765
No 424
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.12 E-value=0.012 Score=53.37 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 355688999999999999999999765
No 425
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.11 E-value=0.013 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..++|+|+|.|||||||+..+|...
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 3478999999999999999999864
No 426
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.09 E-value=0.013 Score=53.13 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 355688999999999999999998765
No 427
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.05 E-value=0.0071 Score=49.16 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+.++|+|+|.+|+||||+...|...-
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 356799999999999999999997653
No 428
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.05 E-value=0.0039 Score=50.21 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
.+.++|+|+|.||+||||+..+|..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4678999999999999999988864
No 429
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.03 E-value=0.014 Score=51.34 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++..|+++|++|+||||++..|+..+
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36788889999999999999999776
No 430
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.02 E-value=0.015 Score=50.04 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.++|+|+|.|||||||+...|...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999999765
No 431
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.02 E-value=0.014 Score=53.47 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.+|-.+.|+||.||||||+.+.|+.-+.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4566889999999999999999987653
No 432
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.02 E-value=0.017 Score=50.53 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++..+.|+|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56688888999999999999998876
No 433
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.00 E-value=0.014 Score=52.92 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.++-.+.|+||.||||||+.+.|+.-+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 3556889999999999999999987653
No 434
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.99 E-value=0.014 Score=51.16 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+..+|.|+|+||+||||+...|...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 35568999999999999999999754
No 435
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.97 E-value=0.016 Score=52.38 Aligned_cols=35 Identities=11% Similarity=0.019 Sum_probs=27.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecc
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMS 110 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~ 110 (233)
.++..++|.|+||+||||+|..++... .+.+|++.
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 356689999999999999999988654 34567764
No 436
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.96 E-value=0.014 Score=52.81 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-.+.|+||.||||||+.+.|+.-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356688999999999999999998765
No 437
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.96 E-value=0.014 Score=52.98 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
++-.+.|+|++||||||+.+.|+....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 345889999999999999999986543
No 438
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.95 E-value=0.0061 Score=49.49 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
.+.++|+|+|.+|+||||+..+|..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999998874
No 439
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.94 E-value=0.015 Score=52.96 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-.+.|+||.||||||+.+.|+.-+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 356688999999999999999998765
No 440
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.93 E-value=0.013 Score=51.47 Aligned_cols=28 Identities=32% Similarity=0.247 Sum_probs=23.9
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
-.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3466689999999999999999998654
No 441
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.93 E-value=0.02 Score=52.90 Aligned_cols=27 Identities=11% Similarity=-0.140 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
++-.++|+||.||||||+.+.|...++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 344789999999999999999998875
No 442
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.88 E-value=0.016 Score=50.80 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+..+.|+|++||||||+.+.|. ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 35678999999999999999998 54
No 443
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.87 E-value=0.013 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+-++.|+||.||||||+.+.|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999998765
No 444
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.86 E-value=0.014 Score=51.19 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~ 100 (233)
.+.|+|+|++|+||||+.+.|..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 46889999999999999999864
No 445
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.85 E-value=0.0095 Score=53.12 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
++-.++|+||+||||||+.+.|+..+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 345889999999999999999998874
No 446
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.82 E-value=0.016 Score=52.66 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++-.+.|+||.||||||+.+.|+.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 55688999999999999999998765
No 447
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.80 E-value=0.028 Score=48.43 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
...++|+|+|.|||||||+...|...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45568999999999999999999765
No 448
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.79 E-value=0.0065 Score=58.51 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLLEVP 105 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~gl~ 105 (233)
..++|.||||+|||++|+.+++..+..
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCE
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCc
Confidence 379999999999999999999987643
No 449
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.79 E-value=0.018 Score=53.18 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++|.|+||+||||++..+++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998876
No 450
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.75 E-value=0.018 Score=52.43 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=23.9
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
-.+|-.+.|+||.||||||+.+.|+.-+
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3456689999999999999999998755
No 451
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.73 E-value=0.022 Score=50.13 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-.++|.|+||+||||++..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998764
No 452
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.69 E-value=0.01 Score=52.62 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=24.8
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
-.+|-++.|+||.||||||+.+.|+.-+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 34567899999999999999999987764
No 453
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.69 E-value=0.012 Score=53.07 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 355688999999999999999998765
No 454
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.66 E-value=0.025 Score=52.47 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++..|+|+|++|+||||++..||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356688889999999999999998665
No 455
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.64 E-value=0.023 Score=52.13 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=23.6
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
..++.++.|+|+||+||||+.+.|..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34678999999999999999999987
No 456
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.63 E-value=0.016 Score=50.70 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+..+.|+||+||||||+.+.|+...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 34578999999999999999997644
No 457
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.62 E-value=0.02 Score=52.50 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=23.6
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
-.++-.+.|+||.||||||+.+.|+.-+
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3456689999999999999999998643
No 458
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.62 E-value=0.023 Score=52.45 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-.++|.|+||+||||++..++...
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 356689999999999999999987753
No 459
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.62 E-value=0.021 Score=49.98 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+++|+|+|.||+||||+..++...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3579999999999999999998654
No 460
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.60 E-value=0.018 Score=53.59 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.|+|++||||||+.+.|+..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3999999999999999999865
No 461
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.58 E-value=0.022 Score=52.39 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
..++++|+|+|||||||+.+.|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999999765
No 462
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.55 E-value=0.021 Score=52.75 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
++..+.|+|++||||||+.+.|+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4458999999999999999999874
No 463
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.55 E-value=0.031 Score=44.20 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~g 103 (233)
..+|+|+.||||||+.+.|.--++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999987665
No 464
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.51 E-value=0.016 Score=54.83 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++..++|+||+||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45569999999999999999998876
No 465
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.47 E-value=0.021 Score=53.77 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEML 98 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~L 98 (233)
.++-.+.|+|++||||||+++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 35668999999999999999994
No 466
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=94.42 E-value=0.16 Score=47.73 Aligned_cols=126 Identities=10% Similarity=-0.025 Sum_probs=67.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCCh--------HHHHHHHHHhcCCccchHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRSS--------LHKQIANAVNRGEVVSEDIIFGLLS 147 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s~--------lg~~i~~~l~~G~~vpdei~~~li~ 147 (233)
.++..|||+||.|+| +.++|.+.+.-.+.+.- -| .+.+.. .-..+++.+++|+.+--++-.+-+
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~--TR--pR~gE~dG~~Y~FTs~~~V~~vl~~Gk~~iLdId~qg~- 293 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEPDIYQIAK--SE--PRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAV- 293 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCTTTEEECC--CB--C----------CBCCHHHHHHHHTTTCEEEECCCHHHH-
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCCCceeeec--CC--CCCcccccccCCcccHHHHHHHHHCCCeEEEEeCHHHH-
Confidence 455678899999999 88888777633233321 12 122211 124688899999987666655443
Q ss_pred HHHHccCCCCeEEEE--ecchHHH---------------HHHHHHHHhccHHHHHHHhcCcEEEEeCCCCH-HHHHHHHH
Q 026804 148 KRLEDGYYRDNFIVT--NRGGSLK---------------EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAP-VETWQGLL 209 (233)
Q Consensus 148 ~rL~~~~~~~GfILV--D~~e~i~---------------~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~-~eV~~~I~ 209 (233)
++|.......-+|+| .+.+.++ +|++.. ..++..|...--.+.|| .+. ++.+++|.
T Consensus 294 ~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a----~~~e~~~~~~fD~vIvN--ddl~d~a~~~L~ 367 (468)
T 3shw_A 294 DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERS----HKLRKNNHHLFTTTINL--NSMNDGWYGALK 367 (468)
T ss_dssp HHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHH----HHHHHHHGGGCSEEEEC--BTTBCHHHHHHH
T ss_pred HHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHH----HHHHHhhhccCCEEEEC--CCcHHHHHHHHH
Confidence 234433222344555 3444443 333221 12333444332355664 334 36777777
Q ss_pred HHHhhc
Q 026804 210 TALHLQ 215 (233)
Q Consensus 210 ~~L~~~ 215 (233)
++|...
T Consensus 368 ~ii~~~ 373 (468)
T 3shw_A 368 EAIQQQ 373 (468)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777653
No 467
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.38 E-value=0.013 Score=53.04 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-.+.|+||.||||||+.+.|+.-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356688999999999999999999765
No 468
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.38 E-value=0.0059 Score=49.01 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
.+.++|+|+|.+|+||||+..+|..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999988753
No 469
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.35 E-value=0.024 Score=48.47 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+|+|+|.|||||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999765
No 470
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.29 E-value=0.028 Score=47.73 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.+|+||||+...|...
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999999764
No 471
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=94.29 E-value=0.36 Score=43.99 Aligned_cols=126 Identities=12% Similarity=-0.013 Sum_probs=68.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCEEecchhHhhcCCCCC----h----HHHHHHHHHhcCCccchHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPRISMSSIVRQDLSPRS----S----LHKQIANAVNRGEVVSEDIIFGLLS 147 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is~~dllr~~i~~~s----~----lg~~i~~~l~~G~~vpdei~~~li~ 147 (233)
.++..|||+||.| +|+.++|-+.+.-.+.++ .|. .+.+. . .-..+++.+++|+.+--++-.+-+
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~-pR~gE~dG~~Y~Fv~~~~V~~~~~~Gk~~iLdId~qg~- 301 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSE-PRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAV- 301 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCC-CCCSSSCCC--CCCCHHHHHHHHTTTCEEEECCCHHHH-
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCccccccc---cCC-CCCcccCCccCCcCcHHHHHHHHHcCCEEEEEeCHHHH-
Confidence 3556788999998 899999988864334442 122 11111 1 125788899999987666655443
Q ss_pred HHHHccCCCCeEEEE--ecchHHH---------------HHHHHHHHhccHHHHHHHhcCcEEEEeCCCCHH-HHHHHHH
Q 026804 148 KRLEDGYYRDNFIVT--NRGGSLK---------------EKLEAYAELSKPLEDYYQKQKKLLEFQVGSAPV-ETWQGLL 209 (233)
Q Consensus 148 ~rL~~~~~~~GfILV--D~~e~i~---------------~RL~~y~~~~~~l~~~Y~~~~~l~~Ida~~~~~-eV~~~I~ 209 (233)
++|.......-+|+| .+.+.++ +|++.. ..++..|...-..+.||- +.+ +.+++|.
T Consensus 302 ~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a----~~~e~~~~~~fd~vivNd--~l~~~a~~~l~ 375 (391)
T 3tsz_A 302 DRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERS----HKLRKNNHHLFTTTINLN--SMNDGWYGALK 375 (391)
T ss_dssp HHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHH----HHHHHHHGGGCSEEEECC--TTCCHHHHHHH
T ss_pred HHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHH----HHHHHhccccCcEEEECC--CcHHHHHHHHH
Confidence 244433222334554 3344444 333221 123333443323556643 333 4667777
Q ss_pred HHHhhc
Q 026804 210 TALHLQ 215 (233)
Q Consensus 210 ~~L~~~ 215 (233)
++|...
T Consensus 376 ~ii~~~ 381 (391)
T 3tsz_A 376 EAIQQQ 381 (391)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777543
No 472
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.28 E-value=0.027 Score=54.01 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
-.++|.|+||+||||++..|...+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478899999999999999988765
No 473
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.28 E-value=0.028 Score=47.94 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+.++|+|+|.+|+||||+...|...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 5689999999999999999999754
No 474
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.27 E-value=0.033 Score=50.16 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=26.9
Q ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHHHHh-----C--CCEEecch
Q 026804 72 GRERRRGVHWAFIGSPRAKKHVYAEMLSKLL-----E--VPRISMSS 111 (233)
Q Consensus 72 ~~~~~~~~~IvliGpPGSGKsTlA~~La~~~-----g--l~~Is~~d 111 (233)
|.-| ++ ++.|.||||+||||+|-.++... | +.+|+..+
T Consensus 24 GGl~-~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 24 GGMQ-SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CCBC-SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCCc-CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 3444 56 68999999999999988876543 2 34666543
No 475
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.27 E-value=0.05 Score=46.03 Aligned_cols=28 Identities=14% Similarity=-0.097 Sum_probs=24.8
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
..++...++.|++||||||.+-.++.++
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3467788999999999999999999887
No 476
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.26 E-value=0.023 Score=50.32 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.||+||||+..+|...
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~ 188 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLG 188 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSS
T ss_pred cCcceEEEECCCCccHHHHHHHHhCC
Confidence 45679999999999999999988653
No 477
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.26 E-value=0.03 Score=50.37 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
.+|-++.|+|++||||||+.+.|+....-
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46679999999999999999999998753
No 478
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.22 E-value=0.036 Score=52.06 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=29.7
Q ss_pred cccccchhHHhhhccccccccccCcccCCceEEEEEcCCCCCHHHHHHHHHH
Q 026804 49 YQAESDSDQHRDSLRSVTLPDTEGRERRRGVHWAFIGSPRAKKHVYAEMLSK 100 (233)
Q Consensus 49 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvliGpPGSGKsTlA~~La~ 100 (233)
..-|++.+.+.+.+... ......++|.|++|+||||+|..++.
T Consensus 127 vGR~~~l~~L~~~L~~~---------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 127 VTRKKLVNAIQQKLSKL---------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCHHHHHHHHHHHTTS---------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHhcc---------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 34466777776644211 12334788999999999999998854
No 479
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.20 E-value=0.028 Score=49.28 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=23.0
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
+|...-.|.|+|.||+||||+...|...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4455568999999999999999998754
No 480
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=94.19 E-value=0.22 Score=44.34 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=63.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCE-EecchhHhhcCCCCC-hHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCC
Q 026804 80 HWAFIGSPRAKKHVYAEMLSKLLEVPR-ISMSSIVRQDLSPRS-SLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRD 157 (233)
Q Consensus 80 ~IvliGpPGSGKsTlA~~La~~~gl~~-Is~~dllr~~i~~~s-~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~ 157 (233)
-|||+|| ||+|+.++|-+.+--.+ .++. + ...+.++. -.-..+++.+++|+.+--++-.+-++ +|.......
T Consensus 147 PvVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~-~r~i~~~~fis~~~V~~vl~~Gk~~ILDId~QGa~-~lk~~~~~p 220 (308)
T 3kfv_A 147 PVVILGP---VADIAMQKLTAEMPDQFEIAET-V-SRTDSPSKIIKLDTVRVIAEKDKHALLDVTPSAIE-RLNYVQYYP 220 (308)
T ss_dssp CEEEEST---THHHHHHHHHHHCTTTEEECCC-C---------CCCHHHHHHHHHTTCEEEECCCHHHHH-HHHHTTCCC
T ss_pred eEEEeCc---cHHHHHHHHHHhCccccccccc-c-cccccCCCeecHHHHHHHHHCCCcEEEEECHHHHH-HHHhcCCCC
Confidence 3788899 79999999988763222 1111 0 11111110 02246788899999876666554432 343322223
Q ss_pred eEEEE--ecchHHHHHHHHHH-----------HhccHHHHHHHhcCcEEE-EeCCCCHHHHHHHHHHHHhhcc
Q 026804 158 NFIVT--NRGGSLKEKLEAYA-----------ELSKPLEDYYQKQKKLLE-FQVGSAPVETWQGLLTALHLQH 216 (233)
Q Consensus 158 GfILV--D~~e~i~~RL~~y~-----------~~~~~l~~~Y~~~~~l~~-Ida~~~~~eV~~~I~~~L~~~~ 216 (233)
-+|+| .+.+.+++|...-. +....++..|...-..+. || .+.++.+++|.++|....
T Consensus 221 i~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~eiE~~~~~~FD~vI~VN--Ddle~A~~~L~~iI~~~~ 291 (308)
T 3kfv_A 221 IVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLN--GTSDTWYQELKAIIREQQ 291 (308)
T ss_dssp EEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHGGGCSEEEEEC--SSSTHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhhccCcEEEEcC--CCHHHHHHHHHHHHHHhc
Confidence 34554 33444443321110 001123333433222333 54 456677888888886543
No 481
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.17 E-value=0.027 Score=48.20 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLS 99 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La 99 (233)
.++|+|+|.||+||||+...|.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 4789999999999999999864
No 482
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.16 E-value=0.029 Score=49.99 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+..+++|+|+||+||||+...|+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35679999999999999999999764
No 483
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.14 E-value=0.028 Score=52.89 Aligned_cols=29 Identities=7% Similarity=-0.065 Sum_probs=24.5
Q ss_pred ccCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 74 ERRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 74 ~~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.-.++-.+.|.|+|||||||+++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34467789999999999999999998664
No 484
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.13 E-value=0.035 Score=47.69 Aligned_cols=26 Identities=8% Similarity=0.064 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.+.++|+|+|.||+||||+..++...
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECCCCCChHHHHHHHHhC
Confidence 46689999999999999999998754
No 485
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.13 E-value=0.035 Score=51.48 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++..|.|+|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56678889999999999999999877
No 486
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.09 E-value=0.027 Score=53.59 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=24.7
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
|.+|-.+.|+||.||||||+.+.|+..+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5577799999999999999999998754
No 487
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.03 E-value=0.035 Score=51.54 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEV 104 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl 104 (233)
.+|-++.|+||+||||||+.+.|+.....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 46678999999999999999999998754
No 488
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.03 E-value=0.035 Score=50.32 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh-----CCCEEecch
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL-----EVPRISMSS 111 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~-----gl~~Is~~d 111 (233)
++-.++|.|+||+||||+|..++... .+.+|++..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 56678889999999999999987764 345677653
No 489
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.00 E-value=0.026 Score=52.15 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 79 VHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 79 ~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
+.|+|+|++||||||+.+.|+...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCC
Confidence 578999999999999999998643
No 490
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.97 E-value=0.029 Score=51.77 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=21.6
Q ss_pred cCCceEEEEEcCCCCCHHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSPRAKKHVYAEMLSKL 101 (233)
Q Consensus 75 ~~~~~~IvliGpPGSGKsTlA~~La~~ 101 (233)
.++..+|+|+|.||+||||+..+|...
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345568999999999999999999654
No 491
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.94 E-value=0.043 Score=50.52 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.++-.++|.|+||+||||+|..++...
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356689999999999999999988753
No 492
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.92 E-value=0.031 Score=49.21 Aligned_cols=25 Identities=12% Similarity=-0.130 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
...++|+|+.||||||+.+.|....
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3467899999999999999998653
No 493
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=93.92 E-value=0.044 Score=49.49 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhC
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLE 103 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~g 103 (233)
.+-++|+|+|..||||||+++.+.--++
T Consensus 7 ~~~~k~lllG~~~sGKsT~~kq~~~~~~ 34 (354)
T 2xtz_A 7 IHIRKLLLLGAGESGKSTIFKQIKLLFQ 34 (354)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred CCceeEEEECCCCCcHHHHHHHHHHHhc
Confidence 4667899999999999999999876554
No 494
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.91 E-value=0.012 Score=52.29 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
++..+.|+|++||||||+.+.|....
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 46689999999999999999986543
No 495
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=93.85 E-value=0.054 Score=45.81 Aligned_cols=26 Identities=8% Similarity=0.095 Sum_probs=23.5
Q ss_pred cCCceEEEEEcCC---------CCCHHHHHHHHHH
Q 026804 75 RRRGVHWAFIGSP---------RAKKHVYAEMLSK 100 (233)
Q Consensus 75 ~~~~~~IvliGpP---------GSGKsTlA~~La~ 100 (233)
+.+.++|+|+|.| |+||||+..+|..
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 4567899999999 9999999999986
No 496
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=93.82 E-value=0.27 Score=43.18 Aligned_cols=136 Identities=13% Similarity=0.051 Sum_probs=68.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhCCCE-Ee----------------------cchhHhhcCCCC------------
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLLEVPR-IS----------------------MSSIVRQDLSPR------------ 120 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~gl~~-Is----------------------~~dllr~~i~~~------------ 120 (233)
.++.-|||+|| ||+|+.++|.+.+.-.+ .+ ..+-+.+.+.++
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~ 174 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNL 174 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccce
Confidence 34445788887 59999999998863211 11 112222222211
Q ss_pred --ChHHHHHHHHHhcCCccchHHHHHHHHHHHHccCCCCeEEEE--ecchHHHHHHHHHH--------HhccHHHHHHHh
Q 026804 121 --SSLHKQIANAVNRGEVVSEDIIFGLLSKRLEDGYYRDNFIVT--NRGGSLKEKLEAYA--------ELSKPLEDYYQK 188 (233)
Q Consensus 121 --s~lg~~i~~~l~~G~~vpdei~~~li~~rL~~~~~~~GfILV--D~~e~i~~RL~~y~--------~~~~~l~~~Y~~ 188 (233)
++ -..+++.+++|+.+--++-.+-+ .+|.......-+|+| .+.+.+++|+.... +....++..|.+
T Consensus 175 YGT~-~~~V~~~~~~gk~viLdid~qg~-~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~k~e~e~~~ 252 (292)
T 3tvt_A 175 YGTS-VASVREVAEKGKHCILDVSGNAI-KRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFGE 252 (292)
T ss_dssp EEEE-HHHHHHHHHHTCEEEECCCTHHH-HHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHHHHHHHHTT
T ss_pred eEEe-hHHHHHHHHcCCcEEEeccchhh-hhcccccccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHHHHHHhhhh
Confidence 11 23567777888766444433332 234333222334444 33344443332110 011112223333
Q ss_pred cCcEEEEeCCCCHHHHHHHHHHHHhhcccc
Q 026804 189 QKKLLEFQVGSAPVETWQGLLTALHLQHIN 218 (233)
Q Consensus 189 ~~~l~~Ida~~~~~eV~~~I~~~L~~~~~~ 218 (233)
.-..+.+ +.+.++.+++|.++|..+...
T Consensus 253 ~fD~vIv--Nddle~a~~~l~~iI~~e~~~ 280 (292)
T 3tvt_A 253 YFTGVVQ--GDTIEEIYSKVKSMIWSQSGP 280 (292)
T ss_dssp TCSEEEC--CSSHHHHHHHHHHHHHHHTCS
T ss_pred hCCEEEE--CcCHHHHHHHHHHHHHHhhCC
Confidence 2223444 567899999999999876543
No 497
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.77 E-value=0.039 Score=49.61 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
....++|+|++||||||+++.|...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999987664
No 498
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.72 E-value=0.037 Score=48.77 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 78 GVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 78 ~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
...++|.||||+||+|.|+.|++..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999864
No 499
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.67 E-value=0.039 Score=52.39 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHh
Q 026804 76 RRGVHWAFIGSPRAKKHVYAEMLSKLL 102 (233)
Q Consensus 76 ~~~~~IvliGpPGSGKsTlA~~La~~~ 102 (233)
.+|-++.|+||.||||||+.+.|+..+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466789999999999999999998754
No 500
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.66 E-value=0.05 Score=48.57 Aligned_cols=31 Identities=23% Similarity=0.070 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhCCCEEe
Q 026804 77 RGVHWAFIGSPRAKKHVYAEMLSKLLEVPRIS 108 (233)
Q Consensus 77 ~~~~IvliGpPGSGKsTlA~~La~~~gl~~Is 108 (233)
.+.-++|.|++|+||||+|..|.++ |...|+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~ 173 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVA 173 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence 3567999999999999999999886 766665
Done!