Query 026806
Match_columns 233
No_of_seqs 146 out of 550
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 12:59:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3584 cAMP response element 99.5 6.2E-14 1.3E-18 128.9 8.6 134 21-164 193-344 (348)
2 PF00170 bZIP_1: bZIP transcri 99.4 3.7E-12 7.9E-17 91.7 9.2 63 108-170 2-64 (64)
3 smart00338 BRLZ basic region l 99.3 7.6E-12 1.6E-16 90.2 9.1 61 109-169 3-63 (65)
4 KOG4343 bZIP transcription fac 99.3 8.1E-12 1.7E-16 122.3 10.0 72 103-174 273-344 (655)
5 KOG4005 Transcription factor X 99.1 4.6E-10 1E-14 101.5 10.9 79 109-189 67-145 (292)
6 PF07716 bZIP_2: Basic region 99.0 2.7E-09 5.8E-14 74.9 8.7 51 109-160 3-53 (54)
7 KOG0709 CREB/ATF family transc 98.8 4.7E-09 1E-13 101.5 5.9 68 105-179 245-312 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.0 8.2E-08 1.8E-12 74.0 -6.5 64 106-169 25-88 (92)
9 KOG0837 Transcriptional activa 98.0 3.4E-05 7.5E-10 70.7 8.9 59 106-164 201-259 (279)
10 KOG4571 Activating transcripti 97.7 0.00034 7.4E-09 65.0 11.1 61 112-179 227-288 (294)
11 KOG3119 Basic region leucine z 97.2 0.0043 9.3E-08 56.5 10.9 58 114-178 197-254 (269)
12 KOG4196 bZIP transcription fac 96.9 0.011 2.5E-07 49.5 9.8 65 109-180 51-115 (135)
13 KOG3863 bZIP transcription fac 95.5 0.058 1.3E-06 54.7 8.4 60 114-180 493-552 (604)
14 PF06156 DUF972: Protein of un 95.1 0.13 2.8E-06 41.4 7.8 49 132-180 8-56 (107)
15 PRK13169 DNA replication intia 94.8 0.18 3.9E-06 41.0 7.8 47 133-179 9-55 (110)
16 PF06005 DUF904: Protein of un 94.5 0.29 6.3E-06 36.9 7.9 47 133-179 5-51 (72)
17 PF06005 DUF904: Protein of un 94.2 0.45 9.8E-06 35.9 8.3 55 132-188 11-65 (72)
18 PRK15422 septal ring assembly 94.0 0.26 5.6E-06 38.2 6.7 54 134-189 20-73 (79)
19 PF06156 DUF972: Protein of un 93.9 0.51 1.1E-05 38.0 8.5 53 136-190 5-57 (107)
20 COG3074 Uncharacterized protei 93.7 0.31 6.8E-06 37.4 6.6 47 134-180 20-66 (79)
21 TIGR02449 conserved hypothetic 93.3 0.64 1.4E-05 34.7 7.7 47 133-179 8-54 (65)
22 PRK13729 conjugal transfer pil 93.0 0.56 1.2E-05 46.6 9.0 54 126-179 69-123 (475)
23 PF05266 DUF724: Protein of un 93.0 1.3 2.8E-05 38.9 10.3 87 112-211 90-190 (190)
24 PRK10884 SH3 domain-containing 92.9 0.92 2E-05 40.2 9.4 47 131-177 124-170 (206)
25 PRK13169 DNA replication intia 92.7 1.1 2.5E-05 36.3 8.9 54 135-190 4-57 (110)
26 PF02183 HALZ: Homeobox associ 92.6 0.37 8.1E-06 33.3 5.1 38 143-180 2-39 (45)
27 PF14197 Cep57_CLD_2: Centroso 92.2 0.94 2E-05 33.8 7.2 50 131-180 11-60 (69)
28 TIGR02449 conserved hypothetic 92.1 1.3 2.8E-05 33.1 7.8 54 134-189 2-55 (65)
29 COG4026 Uncharacterized protei 91.7 1.6 3.5E-05 40.3 9.6 60 131-192 141-200 (290)
30 PF10224 DUF2205: Predicted co 91.6 1.5 3.2E-05 33.9 7.9 49 132-180 16-64 (80)
31 TIGR02209 ftsL_broad cell divi 91.2 0.89 1.9E-05 33.6 6.3 48 145-192 23-70 (85)
32 TIGR02894 DNA_bind_RsfA transc 91.1 1.1 2.5E-05 38.7 7.6 41 140-180 98-138 (161)
33 COG4467 Regulator of replicati 91.0 0.91 2E-05 37.3 6.6 46 133-178 9-54 (114)
34 TIGR00219 mreC rod shape-deter 91.0 0.59 1.3E-05 42.9 6.2 40 140-179 67-110 (283)
35 PF08614 ATG16: Autophagy prot 91.0 5.1 0.00011 34.4 11.6 65 115-179 120-184 (194)
36 PF04977 DivIC: Septum formati 90.9 1.3 2.9E-05 31.8 6.8 54 148-201 19-73 (80)
37 PF11559 ADIP: Afadin- and alp 90.6 6.6 0.00014 32.2 11.4 78 110-189 44-121 (151)
38 PF12808 Mto2_bdg: Micro-tubul 90.4 0.73 1.6E-05 33.1 4.9 49 129-180 1-49 (52)
39 PF13747 DUF4164: Domain of un 90.0 7.7 0.00017 30.1 10.7 73 107-179 7-79 (89)
40 PRK00888 ftsB cell division pr 89.4 1.6 3.5E-05 34.7 6.7 45 157-201 38-83 (105)
41 PF04102 SlyX: SlyX; InterPro 88.7 2.9 6.2E-05 30.8 7.2 50 131-180 3-52 (69)
42 PF06785 UPF0242: Uncharacteri 88.6 1.5 3.3E-05 42.3 7.0 54 126-179 121-174 (401)
43 PF04999 FtsL: Cell division p 88.5 1.7 3.8E-05 33.1 6.1 48 144-191 33-80 (97)
44 PRK10884 SH3 domain-containing 88.5 8.8 0.00019 34.1 11.4 49 132-180 118-166 (206)
45 PRK13922 rod shape-determining 86.2 3.8 8.3E-05 36.6 7.9 44 131-178 68-111 (276)
46 COG3883 Uncharacterized protei 86.2 2.7 5.9E-05 39.0 7.1 93 127-226 33-125 (265)
47 PRK02119 hypothetical protein; 86.0 6.6 0.00014 29.5 7.9 50 131-180 8-57 (73)
48 PF15294 Leu_zip: Leucine zipp 85.6 2.6 5.7E-05 39.3 6.7 44 137-180 130-173 (278)
49 PF11559 ADIP: Afadin- and alp 84.7 10 0.00023 31.0 9.2 44 134-177 75-118 (151)
50 PRK00888 ftsB cell division pr 84.5 3.6 7.8E-05 32.7 6.2 35 127-161 29-63 (105)
51 KOG1414 Transcriptional activa 84.5 0.052 1.1E-06 51.8 -5.1 69 104-179 147-219 (395)
52 smart00338 BRLZ basic region l 84.5 5 0.00011 28.6 6.4 38 139-176 26-63 (65)
53 PF07989 Microtub_assoc: Micro 84.0 5.6 0.00012 30.1 6.7 47 134-180 2-56 (75)
54 PRK02793 phi X174 lysis protei 83.6 10 0.00022 28.4 7.9 49 132-180 8-56 (72)
55 KOG1962 B-cell receptor-associ 83.1 4.8 0.0001 36.4 7.0 47 131-177 164-210 (216)
56 PF14197 Cep57_CLD_2: Centroso 83.0 9.6 0.00021 28.5 7.5 47 133-179 20-66 (69)
57 PF15058 Speriolin_N: Sperioli 82.8 3.2 6.9E-05 37.2 5.7 38 134-179 7-44 (200)
58 PRK00295 hypothetical protein; 82.5 13 0.00027 27.6 7.9 48 132-179 5-52 (68)
59 PF01166 TSC22: TSC-22/dip/bun 82.5 2.5 5.3E-05 31.3 4.1 39 147-189 15-53 (59)
60 PF03962 Mnd1: Mnd1 family; I 82.2 13 0.00027 32.4 9.1 64 126-190 77-142 (188)
61 COG4467 Regulator of replicati 82.1 6.5 0.00014 32.4 6.8 45 136-180 5-49 (114)
62 KOG4797 Transcriptional regula 82.0 6.3 0.00014 32.7 6.7 43 146-192 67-109 (123)
63 PRK04325 hypothetical protein; 81.9 13 0.00027 28.0 7.9 49 132-180 9-57 (74)
64 PRK00736 hypothetical protein; 81.7 13 0.00029 27.4 7.9 49 132-180 5-53 (68)
65 PF07106 TBPIP: Tat binding pr 81.7 5 0.00011 33.5 6.3 51 131-181 85-137 (169)
66 PF04880 NUDE_C: NUDE protein, 81.6 2.7 5.8E-05 36.5 4.7 42 134-179 2-43 (166)
67 PRK04406 hypothetical protein; 81.4 13 0.00029 28.1 7.9 49 132-180 11-59 (75)
68 PF09726 Macoilin: Transmembra 81.3 14 0.0003 38.4 10.4 41 135-175 541-581 (697)
69 PF11932 DUF3450: Protein of u 81.2 19 0.0004 32.0 10.1 67 126-192 50-118 (251)
70 PF07888 CALCOCO1: Calcium bin 81.1 25 0.00054 35.8 11.9 65 115-179 154-218 (546)
71 PF00170 bZIP_1: bZIP transcri 80.9 9.5 0.00021 27.1 6.7 24 135-158 36-59 (64)
72 PF12718 Tropomyosin_1: Tropom 80.8 10 0.00023 31.6 7.8 49 131-179 13-61 (143)
73 COG2919 Septum formation initi 80.7 28 0.00061 28.0 11.5 65 138-202 42-107 (117)
74 PF10186 Atg14: UV radiation r 80.7 30 0.00066 30.2 11.1 47 130-176 61-107 (302)
75 KOG4005 Transcription factor X 80.6 6.5 0.00014 36.6 7.0 59 119-179 86-144 (292)
76 PF09755 DUF2046: Uncharacteri 80.5 5.8 0.00013 37.6 6.9 46 135-180 23-68 (310)
77 PF12325 TMF_TATA_bd: TATA ele 79.8 31 0.00066 28.4 10.1 42 138-179 67-108 (120)
78 PF07106 TBPIP: Tat binding pr 79.8 11 0.00025 31.4 7.8 57 132-190 79-137 (169)
79 PF04977 DivIC: Septum formati 79.8 11 0.00025 26.8 6.9 30 129-158 21-50 (80)
80 PF05812 Herpes_BLRF2: Herpesv 79.7 3.4 7.3E-05 34.2 4.5 27 131-157 2-28 (118)
81 TIGR03752 conj_TIGR03752 integ 79.6 9.4 0.0002 38.2 8.3 26 134-159 75-100 (472)
82 PF14662 CCDC155: Coiled-coil 79.6 13 0.00029 33.1 8.5 44 135-178 98-141 (193)
83 PF07407 Seadorna_VP6: Seadorn 79.4 3.6 7.8E-05 39.8 5.2 32 140-173 33-64 (420)
84 PF02173 pKID: pKID domain; I 78.9 1.2 2.6E-05 30.7 1.3 19 35-53 9-27 (41)
85 PRK11637 AmiB activator; Provi 78.6 35 0.00077 32.6 11.6 49 131-179 74-122 (428)
86 PF08614 ATG16: Autophagy prot 78.3 9.3 0.0002 32.8 7.0 43 136-178 113-155 (194)
87 smart00340 HALZ homeobox assoc 78.1 4.2 9.2E-05 28.4 3.9 28 154-181 6-33 (44)
88 PF04728 LPP: Lipoprotein leuc 78.1 24 0.00052 25.8 8.1 45 132-176 3-47 (56)
89 KOG0977 Nuclear envelope prote 77.6 11 0.00023 38.4 8.1 61 121-181 130-190 (546)
90 PF12711 Kinesin-relat_1: Kine 77.3 7.7 0.00017 30.5 5.6 39 142-180 20-64 (86)
91 PF07558 Shugoshin_N: Shugoshi 76.8 2.9 6.3E-05 28.9 2.8 36 141-176 9-44 (46)
92 COG4026 Uncharacterized protei 76.6 14 0.0003 34.3 7.9 48 134-181 158-205 (290)
93 KOG3650 Predicted coiled-coil 76.5 12 0.00027 30.6 6.7 44 137-180 61-104 (120)
94 PHA03162 hypothetical protein; 76.4 1.9 4.1E-05 36.4 2.2 28 129-156 10-37 (135)
95 PF14662 CCDC155: Coiled-coil 76.2 15 0.00032 32.9 7.7 46 135-180 4-49 (193)
96 PRK11637 AmiB activator; Provi 76.2 32 0.00069 32.9 10.6 51 130-180 66-116 (428)
97 PRK00846 hypothetical protein; 76.1 23 0.00051 27.2 7.8 49 132-180 13-61 (77)
98 PF05103 DivIVA: DivIVA protei 76.0 1.6 3.5E-05 34.4 1.6 47 132-178 25-71 (131)
99 PHA03155 hypothetical protein; 74.8 4.1 8.9E-05 33.7 3.6 25 133-157 9-33 (115)
100 COG4942 Membrane-bound metallo 73.8 36 0.00078 33.7 10.4 72 111-182 38-109 (420)
101 PRK10803 tol-pal system protei 72.9 16 0.00034 33.2 7.3 47 133-179 55-101 (263)
102 PF10473 CENP-F_leu_zip: Leuci 72.8 57 0.0012 27.6 11.0 64 115-178 35-98 (140)
103 COG1579 Zn-ribbon protein, pos 72.4 68 0.0015 29.4 11.2 45 114-158 34-78 (239)
104 PF12709 Kinetocho_Slk19: Cent 72.4 21 0.00046 28.1 7.0 40 132-171 42-81 (87)
105 PF12325 TMF_TATA_bd: TATA ele 72.0 25 0.00055 28.9 7.7 31 132-162 30-60 (120)
106 PF09738 DUF2051: Double stran 71.9 21 0.00044 33.7 8.0 81 107-187 88-180 (302)
107 PF10224 DUF2205: Predicted co 71.5 25 0.00054 27.2 7.1 50 131-180 7-57 (80)
108 KOG1318 Helix loop helix trans 71.4 57 0.0012 32.2 11.1 56 83-138 201-256 (411)
109 KOG4196 bZIP transcription fac 71.3 16 0.00034 31.0 6.4 39 151-191 79-117 (135)
110 KOG4571 Activating transcripti 70.9 67 0.0014 30.5 11.0 60 108-167 228-290 (294)
111 TIGR02894 DNA_bind_RsfA transc 70.6 24 0.00051 30.8 7.5 35 132-166 111-145 (161)
112 PF11932 DUF3450: Protein of u 70.5 78 0.0017 28.1 12.4 42 137-178 54-95 (251)
113 PF10211 Ax_dynein_light: Axon 70.5 55 0.0012 28.4 9.9 57 134-191 122-178 (189)
114 PF05377 FlaC_arch: Flagella a 70.2 20 0.00043 26.1 5.8 32 134-165 2-33 (55)
115 PF03980 Nnf1: Nnf1 ; InterPr 70.1 8.2 0.00018 30.1 4.3 31 130-160 78-108 (109)
116 PF05377 FlaC_arch: Flagella a 70.1 23 0.00049 25.8 6.2 33 133-165 8-40 (55)
117 PF09744 Jnk-SapK_ap_N: JNK_SA 69.8 12 0.00026 32.0 5.6 46 135-180 92-137 (158)
118 KOG3335 Predicted coiled-coil 69.8 12 0.00027 33.1 5.6 45 109-159 89-133 (181)
119 PF09789 DUF2353: Uncharacteri 69.2 14 0.00031 35.1 6.4 46 135-180 68-113 (319)
120 PF08647 BRE1: BRE1 E3 ubiquit 69.1 52 0.0011 25.5 10.7 74 114-189 6-79 (96)
121 PF09304 Cortex-I_coil: Cortex 68.8 54 0.0012 26.9 8.8 48 116-163 21-68 (107)
122 PF12329 TMF_DNA_bd: TATA elem 68.6 47 0.001 24.9 8.3 59 130-190 10-68 (74)
123 PF08172 CASP_C: CASP C termin 68.4 21 0.00046 32.5 7.1 42 132-180 93-134 (248)
124 PF13815 Dzip-like_N: Iguana/D 68.1 24 0.00052 28.2 6.7 39 137-175 78-116 (118)
125 COG2433 Uncharacterized conser 68.0 23 0.00049 36.8 7.8 28 132-159 436-463 (652)
126 PF04111 APG6: Autophagy prote 67.4 28 0.00061 32.5 7.9 47 131-177 63-109 (314)
127 PF08172 CASP_C: CASP C termin 67.4 26 0.00057 31.9 7.5 43 116-159 92-134 (248)
128 PF01486 K-box: K-box region; 66.9 27 0.00059 26.9 6.6 30 148-177 70-99 (100)
129 KOG1414 Transcriptional activa 66.6 2.6 5.6E-05 40.4 0.9 47 105-152 280-326 (395)
130 PHA02562 46 endonuclease subun 66.1 82 0.0018 30.4 11.0 45 132-176 358-402 (562)
131 PF13863 DUF4200: Domain of un 65.1 53 0.0012 25.7 8.0 45 114-158 63-107 (126)
132 PF05700 BCAS2: Breast carcino 64.8 47 0.001 29.3 8.4 37 140-176 176-212 (221)
133 PRK09039 hypothetical protein; 64.8 1.1E+02 0.0023 29.1 11.2 43 137-179 135-177 (343)
134 PF09728 Taxilin: Myosin-like 64.4 34 0.00073 32.0 7.8 61 132-192 244-305 (309)
135 PF08317 Spc7: Spc7 kinetochor 64.2 46 0.001 30.9 8.7 34 133-166 210-243 (325)
136 PHA03162 hypothetical protein; 64.1 7.4 0.00016 33.0 3.1 29 155-183 15-43 (135)
137 TIGR02209 ftsL_broad cell divi 63.9 31 0.00067 25.3 6.1 31 129-159 28-58 (85)
138 PF13851 GAS: Growth-arrest sp 63.8 1E+02 0.0022 27.0 11.1 60 107-166 68-127 (201)
139 KOG4343 bZIP transcription fac 63.8 28 0.00062 35.8 7.5 35 147-181 303-337 (655)
140 PF05278 PEARLI-4: Arabidopsis 63.8 1.2E+02 0.0027 28.4 11.2 62 119-180 190-255 (269)
141 PF14915 CCDC144C: CCDC144C pr 63.7 57 0.0012 31.1 9.1 74 119-192 180-258 (305)
142 COG1792 MreC Cell shape-determ 63.5 25 0.00055 32.4 6.7 46 131-180 65-110 (284)
143 PRK15422 septal ring assembly 63.5 48 0.001 25.8 7.2 38 134-171 6-43 (79)
144 KOG3119 Basic region leucine z 63.3 46 0.001 30.5 8.3 29 131-159 221-249 (269)
145 PHA03155 hypothetical protein; 63.0 17 0.00037 30.1 4.9 51 155-217 10-60 (115)
146 PF04849 HAP1_N: HAP1 N-termin 62.9 24 0.00052 33.5 6.5 40 133-172 161-200 (306)
147 KOG0999 Microtubule-associated 62.5 67 0.0014 33.5 9.9 75 107-181 113-191 (772)
148 PTZ00454 26S protease regulato 62.4 36 0.00077 32.8 7.8 43 147-189 30-73 (398)
149 PF05812 Herpes_BLRF2: Herpesv 62.2 7.9 0.00017 32.1 2.9 27 155-181 5-31 (118)
150 PF10226 DUF2216: Uncharacteri 62.1 80 0.0017 28.4 9.3 61 107-167 19-83 (195)
151 PF08317 Spc7: Spc7 kinetochor 62.0 1.1E+02 0.0024 28.5 10.7 47 132-178 216-262 (325)
152 PF11365 DUF3166: Protein of u 61.9 33 0.00072 27.4 6.3 39 142-180 4-42 (96)
153 COG4942 Membrane-bound metallo 61.1 83 0.0018 31.2 10.1 12 151-162 92-103 (420)
154 PRK02119 hypothetical protein; 60.9 68 0.0015 24.0 8.1 48 133-180 3-50 (73)
155 KOG1853 LIS1-interacting prote 60.5 48 0.001 31.4 7.9 34 139-172 91-124 (333)
156 KOG1691 emp24/gp25L/p24 family 60.2 39 0.00085 30.6 7.1 70 128-215 130-199 (210)
157 PRK03992 proteasome-activating 60.1 39 0.00083 32.1 7.5 47 135-181 4-50 (389)
158 PF08826 DMPK_coil: DMPK coile 60.0 67 0.0015 23.6 7.3 44 137-180 16-59 (61)
159 PF13870 DUF4201: Domain of un 59.8 53 0.0011 27.6 7.6 58 132-189 91-148 (177)
160 PF01166 TSC22: TSC-22/dip/bun 59.4 18 0.00038 26.8 3.9 24 135-158 17-40 (59)
161 PF07558 Shugoshin_N: Shugoshi 59.3 10 0.00022 26.2 2.6 42 113-155 3-44 (46)
162 KOG1962 B-cell receptor-associ 59.3 93 0.002 28.3 9.3 44 137-180 149-192 (216)
163 PF06698 DUF1192: Protein of u 59.2 36 0.00077 25.0 5.5 26 134-159 23-48 (59)
164 PF04859 DUF641: Plant protein 59.0 35 0.00075 28.6 6.2 44 132-175 87-130 (131)
165 PF06216 RTBV_P46: Rice tungro 58.2 52 0.0011 31.3 7.8 34 131-164 77-110 (389)
166 PF04728 LPP: Lipoprotein leuc 58.2 71 0.0015 23.3 6.9 36 140-175 4-39 (56)
167 TIGR03752 conj_TIGR03752 integ 58.2 25 0.00054 35.2 6.0 32 132-163 66-97 (472)
168 PF12709 Kinetocho_Slk19: Cent 58.1 46 0.001 26.3 6.3 26 152-177 48-73 (87)
169 PF04340 DUF484: Protein of un 58.0 58 0.0012 28.4 7.7 23 137-159 45-67 (225)
170 PF08232 Striatin: Striatin fa 57.9 50 0.0011 27.3 6.9 48 136-183 29-76 (134)
171 smart00340 HALZ homeobox assoc 57.7 27 0.00059 24.4 4.4 27 133-159 6-32 (44)
172 PF14645 Chibby: Chibby family 57.6 52 0.0011 26.8 6.9 43 134-176 73-115 (116)
173 PRK04406 hypothetical protein; 57.3 82 0.0018 23.8 8.1 47 134-180 6-52 (75)
174 PF10805 DUF2730: Protein of u 57.3 88 0.0019 24.7 8.0 37 132-168 49-87 (106)
175 PF10205 KLRAQ: Predicted coil 57.2 39 0.00084 27.4 5.9 31 133-163 41-71 (102)
176 PRK00295 hypothetical protein; 57.0 77 0.0017 23.4 8.1 51 137-189 3-53 (68)
177 PF05837 CENP-H: Centromere pr 56.7 42 0.0009 26.6 6.0 10 146-155 31-40 (106)
178 PF06632 XRCC4: DNA double-str 56.7 52 0.0011 31.5 7.7 6 45-50 63-68 (342)
179 PF04849 HAP1_N: HAP1 N-termin 56.6 43 0.00093 31.8 7.1 39 142-180 230-268 (306)
180 PF09730 BicD: Microtubule-ass 56.6 46 0.001 35.0 7.9 49 133-181 70-118 (717)
181 KOG1103 Predicted coiled-coil 55.7 81 0.0018 31.3 8.9 61 120-180 226-286 (561)
182 PF00038 Filament: Intermediat 55.5 89 0.0019 28.1 8.7 33 128-160 219-251 (312)
183 KOG0995 Centromere-associated 55.1 84 0.0018 32.4 9.2 48 131-178 279-326 (581)
184 PF04871 Uso1_p115_C: Uso1 / p 54.9 1.2E+02 0.0027 25.1 10.8 54 128-181 58-112 (136)
185 PF15035 Rootletin: Ciliary ro 54.6 57 0.0012 28.5 7.0 25 140-164 89-113 (182)
186 PF04111 APG6: Autophagy prote 54.3 1.5E+02 0.0033 27.7 10.3 43 135-177 81-123 (314)
187 PF03980 Nnf1: Nnf1 ; InterPr 54.3 98 0.0021 24.0 7.7 31 150-180 77-107 (109)
188 PF12718 Tropomyosin_1: Tropom 54.2 98 0.0021 25.8 8.2 34 142-175 17-50 (143)
189 PF15070 GOLGA2L5: Putative go 54.2 91 0.002 32.2 9.4 51 129-179 119-172 (617)
190 KOG0804 Cytoplasmic Zn-finger 54.1 1.2E+02 0.0025 30.8 9.8 50 115-164 368-421 (493)
191 PF05911 DUF869: Plant protein 54.0 49 0.0011 35.0 7.6 49 131-179 91-160 (769)
192 PF03670 UPF0184: Uncharacteri 53.9 95 0.0021 24.4 7.4 48 133-180 27-74 (83)
193 PF10211 Ax_dynein_light: Axon 53.6 72 0.0016 27.7 7.5 33 131-163 126-158 (189)
194 PF04899 MbeD_MobD: MbeD/MobD 53.5 74 0.0016 24.0 6.6 28 136-163 32-59 (70)
195 PF00038 Filament: Intermediat 53.4 1.7E+02 0.0037 26.3 10.6 66 115-180 181-250 (312)
196 PRK14127 cell division protein 53.4 50 0.0011 26.9 6.1 36 132-167 30-65 (109)
197 PF07888 CALCOCO1: Calcium bin 53.2 2.4E+02 0.0053 29.0 12.1 8 38-45 78-85 (546)
198 PF04102 SlyX: SlyX; InterPro 52.5 90 0.002 22.8 7.0 51 137-189 2-52 (69)
199 PRK04325 hypothetical protein; 52.1 93 0.002 23.3 7.0 48 133-180 3-50 (74)
200 PRK00846 hypothetical protein; 52.1 1.1E+02 0.0023 23.6 8.1 53 135-189 9-61 (77)
201 KOG0250 DNA repair protein RAD 51.4 1.3E+02 0.0028 33.3 10.3 57 123-179 370-427 (1074)
202 COG1579 Zn-ribbon protein, pos 51.1 1.7E+02 0.0037 26.9 9.8 52 129-180 86-137 (239)
203 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.0 1.3E+02 0.0029 24.3 10.4 36 144-179 96-131 (132)
204 PRK02793 phi X174 lysis protei 50.6 1E+02 0.0022 22.9 8.0 52 136-189 5-56 (72)
205 PF07716 bZIP_2: Basic region 50.4 82 0.0018 21.7 7.6 23 156-178 28-50 (54)
206 KOG0982 Centrosomal protein Nu 50.2 1E+02 0.0022 31.1 8.6 47 134-180 299-345 (502)
207 PRK15396 murein lipoprotein; P 50.2 1.2E+02 0.0025 23.4 7.6 44 133-176 26-69 (78)
208 KOG2483 Upstream transcription 50.2 57 0.0012 29.7 6.6 42 148-189 107-148 (232)
209 PF04201 TPD52: Tumour protein 49.9 70 0.0015 27.9 6.8 45 137-192 34-78 (162)
210 PF07926 TPR_MLP1_2: TPR/MLP1/ 49.8 78 0.0017 25.6 6.8 38 119-156 92-129 (132)
211 PRK14872 rod shape-determining 49.7 53 0.0012 31.5 6.6 41 132-176 57-97 (337)
212 PF13118 DUF3972: Protein of u 49.7 84 0.0018 26.4 7.0 46 134-179 80-125 (126)
213 COG4238 Murein lipoprotein [Ce 49.2 1.2E+02 0.0027 23.5 7.3 48 132-179 25-72 (78)
214 PF05667 DUF812: Protein of un 49.2 73 0.0016 32.7 7.8 61 132-192 335-403 (594)
215 PRK14160 heat shock protein Gr 49.2 88 0.0019 28.2 7.5 43 133-175 55-97 (211)
216 PF09726 Macoilin: Transmembra 49.1 2E+02 0.0043 30.2 11.0 8 107-114 424-431 (697)
217 PRK03992 proteasome-activating 49.1 63 0.0014 30.6 7.0 43 132-174 8-50 (389)
218 PF05557 MAD: Mitotic checkpoi 49.0 92 0.002 32.0 8.6 50 132-181 510-587 (722)
219 PRK14154 heat shock protein Gr 48.8 74 0.0016 28.6 7.0 31 133-163 67-97 (208)
220 PHA02562 46 endonuclease subun 48.8 1.9E+02 0.0041 28.0 10.3 42 128-169 361-402 (562)
221 KOG0946 ER-Golgi vesicle-tethe 48.7 73 0.0016 34.4 7.8 62 118-179 657-718 (970)
222 PF05667 DUF812: Protein of un 48.5 96 0.0021 31.9 8.5 53 128-180 324-376 (594)
223 PF06990 Gal-3-0_sulfotr: Gala 48.4 36 0.00077 33.0 5.3 76 144-228 301-377 (402)
224 PF07047 OPA3: Optic atrophy 3 47.8 43 0.00094 27.5 5.0 38 109-152 95-132 (134)
225 PF08961 DUF1875: Domain of un 47.8 6.1 0.00013 36.2 0.0 42 131-172 121-162 (243)
226 PRK10803 tol-pal system protei 47.7 1.2E+02 0.0025 27.6 8.2 49 128-176 57-105 (263)
227 COG1382 GimC Prefoldin, chaper 47.5 81 0.0018 26.2 6.5 40 129-168 67-106 (119)
228 PTZ00454 26S protease regulato 47.3 69 0.0015 30.9 7.0 41 135-175 25-65 (398)
229 KOG0288 WD40 repeat protein Ti 47.3 1.3E+02 0.0029 30.1 9.0 43 116-158 27-74 (459)
230 KOG4360 Uncharacterized coiled 47.3 79 0.0017 32.5 7.6 49 131-179 218-266 (596)
231 PF10146 zf-C4H2: Zinc finger- 47.2 78 0.0017 28.7 6.9 41 135-175 63-103 (230)
232 PF10883 DUF2681: Protein of u 46.9 1.2E+02 0.0027 23.8 7.2 51 137-192 28-82 (87)
233 PF10473 CENP-F_leu_zip: Leuci 46.7 1.8E+02 0.0039 24.6 10.6 26 155-180 68-93 (140)
234 KOG2129 Uncharacterized conser 46.6 29 0.00062 34.9 4.4 45 135-179 46-90 (552)
235 COG3879 Uncharacterized protei 46.6 1E+02 0.0023 28.5 7.7 14 197-212 110-123 (247)
236 cd07429 Cby_like Chibby, a nuc 46.4 36 0.00079 27.8 4.3 27 136-162 76-102 (108)
237 PF07047 OPA3: Optic atrophy 3 46.3 50 0.0011 27.1 5.2 36 124-159 97-132 (134)
238 PF05600 DUF773: Protein of un 46.1 1.6E+02 0.0034 29.6 9.5 49 130-178 444-492 (507)
239 PF06785 UPF0242: Uncharacteri 45.9 1.8E+02 0.0038 28.6 9.4 62 114-179 78-153 (401)
240 PF14775 NYD-SP28_assoc: Sperm 45.9 1.1E+02 0.0025 22.1 7.5 39 139-178 20-58 (60)
241 PF10186 Atg14: UV radiation r 45.7 2.1E+02 0.0045 25.0 10.7 22 132-153 70-91 (302)
242 PF09730 BicD: Microtubule-ass 45.7 1.6E+02 0.0036 31.1 9.8 47 133-179 42-88 (717)
243 PRK14162 heat shock protein Gr 45.7 96 0.0021 27.5 7.1 9 184-192 98-106 (194)
244 KOG2391 Vacuolar sorting prote 45.6 3E+02 0.0066 26.9 13.1 20 107-126 216-235 (365)
245 PF15058 Speriolin_N: Sperioli 45.4 29 0.00063 31.2 3.9 34 155-188 7-40 (200)
246 PF13815 Dzip-like_N: Iguana/D 45.2 1.1E+02 0.0025 24.3 7.0 37 143-179 77-113 (118)
247 PF05529 Bap31: B-cell recepto 45.1 1.8E+02 0.0039 24.7 8.6 36 144-179 152-187 (192)
248 KOG2391 Vacuolar sorting prote 44.6 1.3E+02 0.0027 29.5 8.2 43 136-178 236-278 (365)
249 PF08232 Striatin: Striatin fa 44.0 1.8E+02 0.004 24.0 8.2 60 115-174 15-74 (134)
250 PF15035 Rootletin: Ciliary ro 44.0 92 0.002 27.1 6.7 48 132-179 67-114 (182)
251 PF14988 DUF4515: Domain of un 43.9 1.5E+02 0.0033 26.2 8.1 46 135-180 152-197 (206)
252 KOG2077 JNK/SAPK-associated pr 43.6 58 0.0013 34.1 6.1 44 136-179 326-369 (832)
253 PF07334 IFP_35_N: Interferon- 43.6 50 0.0011 25.5 4.4 19 142-160 3-21 (76)
254 PF10482 CtIP_N: Tumour-suppre 43.0 1.6E+02 0.0035 24.6 7.5 48 131-178 13-60 (120)
255 COG3883 Uncharacterized protei 43.0 1.3E+02 0.0028 28.1 7.8 54 127-180 54-111 (265)
256 PRK13729 conjugal transfer pil 42.9 1E+02 0.0022 31.1 7.5 48 132-179 83-130 (475)
257 PF14817 HAUS5: HAUS augmin-li 42.9 1.3E+02 0.0028 31.2 8.5 40 133-172 80-119 (632)
258 PF09789 DUF2353: Uncharacteri 42.8 2.1E+02 0.0046 27.4 9.4 37 147-183 66-102 (319)
259 KOG4010 Coiled-coil protein TP 42.7 70 0.0015 28.9 5.8 52 136-198 48-99 (208)
260 PF05529 Bap31: B-cell recepto 42.7 1.9E+02 0.0041 24.5 8.4 32 135-166 157-188 (192)
261 TIGR03689 pup_AAA proteasome A 42.5 72 0.0015 32.1 6.5 40 135-181 4-43 (512)
262 cd07666 BAR_SNX7 The Bin/Amphi 42.5 1.5E+02 0.0032 27.2 8.0 66 123-192 154-219 (243)
263 PRK12705 hypothetical protein; 42.4 3.1E+02 0.0066 27.8 10.9 48 136-183 92-139 (508)
264 PF09304 Cortex-I_coil: Cortex 42.2 1.9E+02 0.0042 23.7 9.2 47 131-177 29-75 (107)
265 PF01486 K-box: K-box region; 42.1 74 0.0016 24.4 5.3 34 123-156 62-99 (100)
266 PF15619 Lebercilin: Ciliary p 42.0 1.5E+02 0.0032 26.1 7.7 32 122-153 8-40 (194)
267 PF04999 FtsL: Cell division p 41.7 52 0.0011 24.9 4.3 27 133-159 43-69 (97)
268 PF12808 Mto2_bdg: Micro-tubul 41.5 49 0.0011 23.8 3.8 26 135-160 25-50 (52)
269 PRK14160 heat shock protein Gr 41.5 1.5E+02 0.0032 26.7 7.7 43 133-175 62-104 (211)
270 PF11180 DUF2968: Protein of u 41.3 2.7E+02 0.0058 25.0 9.6 79 112-192 106-184 (192)
271 PF15030 DUF4527: Protein of u 41.0 2.3E+02 0.005 26.7 9.0 49 116-164 42-90 (277)
272 PF05911 DUF869: Plant protein 40.8 1.1E+02 0.0025 32.4 7.9 63 127-189 129-220 (769)
273 COG4717 Uncharacterized conser 40.8 2.4E+02 0.0052 30.9 10.2 73 120-192 729-820 (984)
274 TIGR02977 phageshock_pspA phag 40.7 2.2E+02 0.0047 25.0 8.6 47 131-177 98-144 (219)
275 PF11544 Spc42p: Spindle pole 40.6 1.7E+02 0.0037 22.6 7.7 46 135-180 8-53 (76)
276 KOG3650 Predicted coiled-coil 40.5 95 0.0021 25.6 5.8 42 129-170 67-108 (120)
277 PRK14140 heat shock protein Gr 40.4 1.3E+02 0.0028 26.6 7.1 29 133-161 38-66 (191)
278 PRK14143 heat shock protein Gr 40.3 1.5E+02 0.0032 27.1 7.7 25 133-157 82-106 (238)
279 PF10506 MCC-bdg_PDZ: PDZ doma 40.2 1.1E+02 0.0025 22.8 5.8 44 136-179 2-45 (67)
280 PF06103 DUF948: Bacterial pro 40.1 1.6E+02 0.0034 22.0 7.8 36 134-169 28-63 (90)
281 PF10146 zf-C4H2: Zinc finger- 40.1 1.3E+02 0.0028 27.3 7.2 31 132-162 32-62 (230)
282 PF12329 TMF_DNA_bd: TATA elem 39.9 1.5E+02 0.0032 22.2 6.4 39 140-178 13-51 (74)
283 PRK10963 hypothetical protein; 39.9 1.7E+02 0.0036 25.8 7.8 14 36-49 14-27 (223)
284 KOG0977 Nuclear envelope prote 39.8 2.4E+02 0.0052 29.0 9.7 24 136-159 166-189 (546)
285 KOG0971 Microtubule-associated 39.2 1.5E+02 0.0032 32.8 8.3 60 132-191 325-399 (1243)
286 KOG2010 Double stranded RNA bi 38.8 1.5E+02 0.0031 29.1 7.6 48 131-178 153-200 (405)
287 PRK11239 hypothetical protein; 38.7 58 0.0013 29.6 4.7 28 134-161 185-212 (215)
288 PF01763 Herpes_UL6: Herpesvir 38.7 1.7E+02 0.0037 30.0 8.5 44 132-175 363-406 (557)
289 KOG0995 Centromere-associated 38.6 1.6E+02 0.0034 30.6 8.2 50 131-180 300-352 (581)
290 COG1730 GIM5 Predicted prefold 38.1 2.1E+02 0.0045 24.4 7.7 22 151-172 113-134 (145)
291 PF09766 FimP: Fms-interacting 38.1 1.8E+02 0.0039 27.6 8.2 55 124-178 100-154 (355)
292 PF05266 DUF724: Protein of un 37.9 2.8E+02 0.0061 24.3 10.7 54 126-179 125-178 (190)
293 PRK00106 hypothetical protein; 37.9 4.1E+02 0.0088 27.1 11.0 7 175-181 158-164 (535)
294 PF07412 Geminin: Geminin; In 37.8 1.5E+02 0.0033 26.7 7.2 33 146-178 125-157 (200)
295 PF01920 Prefoldin_2: Prefoldi 37.8 1.2E+02 0.0027 22.6 5.8 33 134-166 64-96 (106)
296 PF13094 CENP-Q: CENP-Q, a CEN 37.3 1.4E+02 0.0029 24.8 6.5 47 132-178 41-87 (160)
297 PF09727 CortBP2: Cortactin-bi 37.3 3E+02 0.0066 24.6 9.4 39 141-179 136-174 (192)
298 PRK00736 hypothetical protein; 37.3 1.7E+02 0.0036 21.6 7.8 44 137-180 3-46 (68)
299 cd07596 BAR_SNX The Bin/Amphip 37.3 2.3E+02 0.0051 23.2 10.3 66 112-180 111-183 (218)
300 PRK14127 cell division protein 37.2 55 0.0012 26.6 4.0 25 136-160 41-65 (109)
301 KOG0018 Structural maintenance 37.1 2.7E+02 0.0058 31.1 10.0 97 117-218 408-522 (1141)
302 KOG0709 CREB/ATF family transc 37.1 71 0.0015 32.2 5.4 54 107-160 251-314 (472)
303 PF13805 Pil1: Eisosome compon 36.9 1.3E+02 0.0029 28.1 7.0 62 113-179 129-191 (271)
304 KOG0288 WD40 repeat protein Ti 36.8 3.2E+02 0.0069 27.5 9.8 46 133-178 28-73 (459)
305 KOG0239 Kinesin (KAR3 subfamil 36.6 2.9E+02 0.0062 28.9 9.9 18 167-184 300-317 (670)
306 PF06810 Phage_GP20: Phage min 36.5 1.3E+02 0.0027 25.5 6.2 33 131-163 33-68 (155)
307 PRK14158 heat shock protein Gr 36.4 1.8E+02 0.0039 25.8 7.4 26 132-157 54-79 (194)
308 PF02403 Seryl_tRNA_N: Seryl-t 36.4 1.9E+02 0.0042 22.1 7.0 18 162-179 69-86 (108)
309 PF08912 Rho_Binding: Rho Bind 36.4 1.5E+02 0.0032 22.6 5.9 33 137-169 1-33 (69)
310 PRK02224 chromosome segregatio 35.5 4.8E+02 0.01 27.0 11.4 19 161-179 573-591 (880)
311 PRK09413 IS2 repressor TnpA; R 35.4 1.8E+02 0.004 22.9 6.7 10 167-176 92-101 (121)
312 TIGR03689 pup_AAA proteasome A 35.0 1.1E+02 0.0023 31.0 6.4 30 151-180 6-35 (512)
313 PF11544 Spc42p: Spindle pole 34.8 2.2E+02 0.0047 22.1 7.4 43 133-175 13-55 (76)
314 KOG4797 Transcriptional regula 34.8 1.2E+02 0.0025 25.4 5.5 25 133-157 68-92 (123)
315 KOG4643 Uncharacterized coiled 34.7 1.6E+02 0.0035 32.7 7.9 44 117-160 503-558 (1195)
316 COG2900 SlyX Uncharacterized p 34.7 2.1E+02 0.0046 22.0 7.8 48 132-179 8-55 (72)
317 PRK14139 heat shock protein Gr 34.7 1.9E+02 0.0041 25.5 7.2 20 136-155 50-69 (185)
318 PRK09413 IS2 repressor TnpA; R 34.6 1E+02 0.0022 24.4 5.2 23 137-159 76-98 (121)
319 PF04136 Sec34: Sec34-like fam 34.6 2.8E+02 0.0061 23.4 8.5 71 132-202 21-97 (157)
320 KOG0161 Myosin class II heavy 34.6 3.6E+02 0.0077 31.9 10.9 20 136-155 1481-1500(1930)
321 PF07200 Mod_r: Modifier of ru 34.6 2.5E+02 0.0054 22.7 8.6 49 116-165 40-88 (150)
322 PF14077 WD40_alt: Alternative 34.2 44 0.00094 23.8 2.5 21 132-152 18-38 (48)
323 PF11853 DUF3373: Protein of u 33.9 36 0.00078 34.3 2.9 23 133-155 32-54 (489)
324 PF09486 HrpB7: Bacterial type 33.9 2.9E+02 0.0064 23.8 8.1 49 132-180 79-127 (158)
325 PRK14148 heat shock protein Gr 33.7 2.1E+02 0.0046 25.4 7.4 9 184-192 99-107 (195)
326 cd07429 Cby_like Chibby, a nuc 33.7 96 0.0021 25.4 4.8 16 137-152 84-99 (108)
327 PF04568 IATP: Mitochondrial A 33.6 2.5E+02 0.0055 22.5 7.5 46 116-161 53-98 (100)
328 PF12777 MT: Microtubule-bindi 33.4 2.1E+02 0.0045 26.8 7.7 45 115-159 225-269 (344)
329 PRK13923 putative spore coat p 33.2 1.4E+02 0.0029 26.3 6.0 37 131-167 110-146 (170)
330 PRK04863 mukB cell division pr 33.2 5.2E+02 0.011 29.7 11.8 42 136-177 359-400 (1486)
331 COG5509 Uncharacterized small 32.9 1.1E+02 0.0024 22.9 4.7 24 134-157 27-50 (65)
332 PF02344 Myc-LZ: Myc leucine z 32.8 96 0.0021 20.4 3.8 25 136-160 5-29 (32)
333 COG2433 Uncharacterized conser 32.6 3.2E+02 0.0069 28.7 9.3 42 133-174 423-464 (652)
334 PRK13922 rod shape-determining 32.6 1.3E+02 0.0027 26.9 6.0 37 139-179 69-105 (276)
335 COG4839 FtsL Protein required 32.5 1.4E+02 0.003 25.0 5.6 49 144-192 58-106 (120)
336 COG4372 Uncharacterized protei 32.4 4.3E+02 0.0094 26.6 9.8 41 141-181 139-179 (499)
337 KOG1029 Endocytic adaptor prot 32.4 3.3E+02 0.0072 29.8 9.5 28 30-57 177-206 (1118)
338 PF04201 TPD52: Tumour protein 32.3 2.7E+02 0.0059 24.3 7.6 11 136-146 40-50 (162)
339 PHA02109 hypothetical protein 31.8 1.5E+02 0.0032 26.8 6.1 9 45-53 16-24 (233)
340 KOG0978 E3 ubiquitin ligase in 31.7 3.8E+02 0.0083 28.4 9.9 62 123-184 564-625 (698)
341 KOG0161 Myosin class II heavy 31.6 2.5E+02 0.0055 33.0 9.2 64 117-180 1645-1708(1930)
342 PRK11546 zraP zinc resistance 31.3 2E+02 0.0042 24.6 6.5 49 132-180 61-109 (143)
343 PF15136 UPF0449: Uncharacteri 31.3 2.8E+02 0.0061 22.3 7.1 40 139-178 57-96 (97)
344 KOG4807 F-actin binding protei 30.8 2.9E+02 0.0062 28.0 8.4 27 148-174 423-449 (593)
345 PRK14161 heat shock protein Gr 30.8 2.3E+02 0.0051 24.6 7.1 9 184-192 78-86 (178)
346 PRK14147 heat shock protein Gr 30.5 2.3E+02 0.0049 24.5 6.9 21 134-154 34-54 (172)
347 PF15236 CCDC66: Coiled-coil d 30.5 3.6E+02 0.0078 23.4 10.2 16 102-117 43-58 (157)
348 TIGR03185 DNA_S_dndD DNA sulfu 30.3 2.4E+02 0.0052 28.6 8.1 46 132-177 209-254 (650)
349 COG1382 GimC Prefoldin, chaper 30.3 1.6E+02 0.0036 24.4 5.7 35 132-166 77-111 (119)
350 PF06810 Phage_GP20: Phage min 30.1 2.8E+02 0.006 23.5 7.3 11 205-215 122-132 (155)
351 KOG1318 Helix loop helix trans 30.1 1.3E+02 0.0028 29.8 5.9 54 132-192 290-343 (411)
352 KOG4807 F-actin binding protei 30.0 2.6E+02 0.0056 28.3 7.9 55 141-195 437-493 (593)
353 PRK14155 heat shock protein Gr 30.0 1.9E+02 0.0041 25.9 6.5 26 132-157 27-52 (208)
354 PF07407 Seadorna_VP6: Seadorn 29.9 1.8E+02 0.004 28.5 6.8 17 133-149 47-63 (420)
355 PF10174 Cast: RIM-binding pro 29.9 2.1E+02 0.0045 30.5 7.8 50 129-178 298-354 (775)
356 KOG0483 Transcription factor H 29.8 98 0.0021 27.6 4.7 35 144-178 110-144 (198)
357 KOG4643 Uncharacterized coiled 29.5 4.5E+02 0.0098 29.4 10.1 68 112-179 374-441 (1195)
358 PF11382 DUF3186: Protein of u 29.4 1.9E+02 0.0041 26.9 6.7 35 133-167 33-67 (308)
359 PF09728 Taxilin: Myosin-like 29.4 4.8E+02 0.01 24.4 10.9 52 129-180 47-98 (309)
360 PF04156 IncA: IncA protein; 29.3 3.4E+02 0.0073 22.6 10.5 50 129-178 127-176 (191)
361 PRK14148 heat shock protein Gr 29.2 2.1E+02 0.0046 25.3 6.7 27 132-158 54-80 (195)
362 COG1196 Smc Chromosome segrega 29.2 7E+02 0.015 27.4 11.7 46 133-178 440-485 (1163)
363 PRK14145 heat shock protein Gr 29.2 3E+02 0.0064 24.5 7.6 24 133-156 60-83 (196)
364 PF14282 FlxA: FlxA-like prote 29.0 2.7E+02 0.0059 21.9 6.7 27 152-178 50-76 (106)
365 TIGR01242 26Sp45 26S proteasom 29.0 1.4E+02 0.0031 27.6 5.8 35 147-181 7-41 (364)
366 KOG0933 Structural maintenance 28.9 3.1E+02 0.0067 30.6 8.8 51 131-181 814-864 (1174)
367 COG2919 Septum formation initi 28.6 2.6E+02 0.0057 22.4 6.6 58 111-168 21-86 (117)
368 PF06305 DUF1049: Protein of u 28.5 84 0.0018 22.0 3.3 11 133-143 56-66 (68)
369 KOG0980 Actin-binding protein 28.5 6.5E+02 0.014 27.8 11.0 63 118-180 452-514 (980)
370 smart00787 Spc7 Spc7 kinetocho 28.5 5.1E+02 0.011 24.4 10.6 56 133-190 205-260 (312)
371 KOG4403 Cell surface glycoprot 28.4 4.4E+02 0.0095 27.0 9.3 66 111-180 242-315 (575)
372 PRK14163 heat shock protein Gr 28.4 2.6E+02 0.0055 25.3 7.1 26 132-157 54-79 (214)
373 KOG2264 Exostosin EXT1L [Signa 28.3 1.8E+02 0.0039 30.7 6.8 48 132-179 93-140 (907)
374 PRK14141 heat shock protein Gr 28.1 2.1E+02 0.0044 25.8 6.4 23 134-156 47-69 (209)
375 PF14915 CCDC144C: CCDC144C pr 28.1 2.1E+02 0.0045 27.4 6.7 41 138-178 62-102 (305)
376 PRK14143 heat shock protein Gr 28.1 1.9E+02 0.0041 26.4 6.3 29 134-162 76-104 (238)
377 TIGR02680 conserved hypothetic 28.0 1.7E+02 0.0036 32.8 7.0 42 131-172 741-782 (1353)
378 KOG0946 ER-Golgi vesicle-tethe 28.0 2.7E+02 0.0058 30.4 8.1 48 132-179 650-697 (970)
379 PF04156 IncA: IncA protein; 27.9 3.6E+02 0.0077 22.5 12.0 47 133-179 103-149 (191)
380 TIGR01834 PHA_synth_III_E poly 27.9 93 0.002 29.8 4.4 33 148-180 284-316 (320)
381 PRK14151 heat shock protein Gr 27.6 2.7E+02 0.0059 24.2 6.9 23 134-156 36-58 (176)
382 PF04420 CHD5: CHD5-like prote 27.6 2.5E+02 0.0054 23.7 6.6 43 136-178 44-91 (161)
383 PF13600 DUF4140: N-terminal d 27.6 1.9E+02 0.0042 21.9 5.5 26 133-158 71-96 (104)
384 PF13851 GAS: Growth-arrest sp 27.5 4.2E+02 0.0091 23.2 11.4 40 134-173 88-127 (201)
385 cd07667 BAR_SNX30 The Bin/Amph 27.5 4E+02 0.0086 24.5 8.3 55 123-180 151-205 (240)
386 KOG0250 DNA repair protein RAD 27.3 4.2E+02 0.009 29.6 9.5 52 129-180 672-723 (1074)
387 PHA03011 hypothetical protein; 27.3 3.2E+02 0.007 22.6 6.8 47 132-178 64-110 (120)
388 PRK04863 mukB cell division pr 27.2 4.6E+02 0.01 30.1 10.2 16 112-127 322-337 (1486)
389 COG4768 Uncharacterized protei 27.1 2.5E+02 0.0055 24.0 6.4 58 134-193 40-97 (139)
390 TIGR02680 conserved hypothetic 27.0 4E+02 0.0086 30.0 9.6 56 131-186 275-330 (1353)
391 PF09738 DUF2051: Double stran 27.0 2.5E+02 0.0055 26.5 7.1 48 133-180 113-160 (302)
392 PRK14154 heat shock protein Gr 26.8 4.4E+02 0.0095 23.7 8.3 17 37-53 10-26 (208)
393 PRK10698 phage shock protein P 26.8 4.5E+02 0.0098 23.3 9.3 47 132-178 99-145 (222)
394 KOG4360 Uncharacterized coiled 26.8 2.9E+02 0.0064 28.5 7.8 52 129-180 195-246 (596)
395 TIGR01242 26Sp45 26S proteasom 26.7 1.7E+02 0.0036 27.2 5.8 40 136-175 3-42 (364)
396 PF12737 Mating_C: C-terminal 26.7 67 0.0014 31.7 3.3 23 126-148 396-418 (419)
397 TIGR02231 conserved hypothetic 26.6 6.2E+02 0.014 24.8 11.6 45 137-181 129-173 (525)
398 PF13600 DUF4140: N-terminal d 26.4 2E+02 0.0042 21.9 5.3 27 132-158 77-103 (104)
399 PF06818 Fez1: Fez1; InterPro 26.3 1.6E+02 0.0034 26.5 5.3 40 140-179 67-106 (202)
400 PF13870 DUF4201: Domain of un 25.9 3.9E+02 0.0086 22.3 7.8 46 134-179 86-131 (177)
401 PF12711 Kinesin-relat_1: Kine 25.8 2.5E+02 0.0055 22.0 5.8 38 140-179 45-82 (86)
402 TIGR00606 rad50 rad50. This fa 25.7 6.9E+02 0.015 27.8 11.1 16 124-139 849-864 (1311)
403 PF13935 Ead_Ea22: Ead/Ea22-li 25.5 3.8E+02 0.0082 22.0 7.8 15 134-148 92-106 (139)
404 KOG4715 SWI/SNF-related matrix 25.5 3.1E+02 0.0068 26.9 7.5 59 131-189 220-282 (410)
405 PF12999 PRKCSH-like: Glucosid 25.5 4.1E+02 0.009 23.4 7.7 36 124-159 138-173 (176)
406 KOG4593 Mitotic checkpoint pro 25.4 4.7E+02 0.01 27.9 9.2 46 132-181 275-320 (716)
407 PF08961 DUF1875: Domain of un 25.4 23 0.00051 32.5 0.0 47 133-179 116-162 (243)
408 PF05384 DegS: Sensor protein 25.4 4.2E+02 0.0091 22.8 7.6 39 120-158 22-60 (159)
409 PRK09973 putative outer membra 25.3 3.4E+02 0.0074 21.4 7.4 46 133-178 25-70 (85)
410 PF10669 Phage_Gp23: Protein g 25.3 3.9E+02 0.0084 22.0 7.5 20 105-124 49-68 (121)
411 PRK14144 heat shock protein Gr 25.2 3.4E+02 0.0073 24.3 7.2 24 133-156 60-83 (199)
412 TIGR03319 YmdA_YtgF conserved 25.2 7.1E+02 0.015 25.0 11.8 6 176-181 138-143 (514)
413 PF11690 DUF3287: Protein of u 25.1 1.6E+02 0.0035 24.1 4.8 50 132-186 42-93 (109)
414 PRK14157 heat shock protein Gr 25.0 2.7E+02 0.0059 25.4 6.7 29 132-160 91-119 (227)
415 KOG4001 Axonemal dynein light 24.9 4.4E+02 0.0094 24.4 7.9 54 120-173 169-226 (259)
416 PF06216 RTBV_P46: Rice tungro 24.9 4.2E+02 0.0091 25.4 8.1 37 144-180 69-105 (389)
417 COG1340 Uncharacterized archae 24.9 6.1E+02 0.013 24.2 9.7 67 104-179 7-74 (294)
418 PF10212 TTKRSYEDQ: Predicted 24.8 3.9E+02 0.0085 27.4 8.3 47 131-177 419-465 (518)
419 PRK14161 heat shock protein Gr 24.8 3.8E+02 0.0083 23.3 7.4 17 136-152 37-53 (178)
420 PF06305 DUF1049: Protein of u 24.5 87 0.0019 21.9 2.8 16 135-150 51-66 (68)
421 TIGR00606 rad50 rad50. This fa 24.4 5.9E+02 0.013 28.3 10.2 45 130-174 886-930 (1311)
422 KOG3433 Protein involved in me 24.4 4.1E+02 0.009 24.0 7.5 52 128-179 77-128 (203)
423 KOG2077 JNK/SAPK-associated pr 24.4 2.3E+02 0.005 29.9 6.7 49 131-179 328-376 (832)
424 PF15556 Zwint: ZW10 interacto 24.3 5.7E+02 0.012 23.6 11.0 55 115-169 117-171 (252)
425 KOG0982 Centrosomal protein Nu 24.3 3.7E+02 0.0079 27.3 7.9 52 128-181 281-332 (502)
426 PF06818 Fez1: Fez1; InterPro 24.3 5.3E+02 0.012 23.2 9.8 43 130-172 64-106 (202)
427 PF04012 PspA_IM30: PspA/IM30 24.2 4.6E+02 0.0099 22.5 9.2 45 133-177 99-143 (221)
428 PF03245 Phage_lysis: Bacterio 24.1 3.9E+02 0.0085 21.7 9.1 47 132-178 14-60 (125)
429 KOG0999 Microtubule-associated 23.8 2.4E+02 0.0052 29.7 6.7 75 132-206 114-203 (772)
430 KOG0818 GTPase-activating prot 23.8 1.6E+02 0.0034 30.5 5.4 45 136-180 420-464 (669)
431 PF06210 DUF1003: Protein of u 23.7 3.9E+02 0.0085 21.5 7.9 27 145-171 79-105 (108)
432 PF08537 NBP1: Fungal Nap bind 23.6 2.8E+02 0.0061 26.7 6.8 45 136-180 179-223 (323)
433 KOG4593 Mitotic checkpoint pro 23.5 6.2E+02 0.013 27.0 9.6 73 120-192 486-592 (716)
434 PRK14153 heat shock protein Gr 23.5 2.7E+02 0.0059 24.7 6.3 29 131-159 46-74 (194)
435 cd07599 BAR_Rvs167p The Bin/Am 23.4 4.4E+02 0.0096 22.7 7.5 56 125-180 117-180 (216)
436 PRK05431 seryl-tRNA synthetase 23.3 6.7E+02 0.014 24.4 9.5 58 122-179 32-99 (425)
437 PF15290 Syntaphilin: Golgi-lo 23.3 3.5E+02 0.0076 25.9 7.2 13 66-78 44-56 (305)
438 PF00261 Tropomyosin: Tropomyo 23.3 5.1E+02 0.011 22.8 8.1 48 132-179 1-48 (237)
439 KOG1103 Predicted coiled-coil 23.2 5.3E+02 0.012 25.8 8.6 42 139-180 139-180 (561)
440 COG1842 PspA Phage shock prote 23.1 4.7E+02 0.01 23.6 7.8 44 135-178 95-138 (225)
441 PF03670 UPF0184: Uncharacteri 22.9 3.8E+02 0.0082 21.1 8.7 37 132-168 33-69 (83)
442 PF15233 SYCE1: Synaptonemal c 22.8 4.3E+02 0.0093 22.5 7.0 39 134-172 8-46 (134)
443 PF12777 MT: Microtubule-bindi 22.8 6.3E+02 0.014 23.6 9.0 25 149-173 245-269 (344)
444 PF08826 DMPK_coil: DMPK coile 22.7 3.2E+02 0.0069 20.1 8.3 31 136-166 29-59 (61)
445 KOG0447 Dynamin-like GTP bindi 22.7 2.5E+02 0.0053 29.9 6.5 34 137-173 231-264 (980)
446 PF11180 DUF2968: Protein of u 22.6 5.7E+02 0.012 23.0 12.2 48 133-180 113-160 (192)
447 PF15030 DUF4527: Protein of u 22.6 6.6E+02 0.014 23.7 10.3 60 106-165 10-84 (277)
448 PF04871 Uso1_p115_C: Uso1 / p 22.5 4.5E+02 0.0097 21.8 8.4 39 138-176 40-78 (136)
449 COG3132 Uncharacterized protei 22.4 1.1E+02 0.0025 27.5 3.7 38 106-143 127-171 (215)
450 COG1792 MreC Cell shape-determ 22.4 1.5E+02 0.0032 27.5 4.5 25 132-156 83-107 (284)
451 TIGR01554 major_cap_HK97 phage 22.3 5.9E+02 0.013 23.7 8.7 27 133-159 35-61 (378)
452 PRK10929 putative mechanosensi 22.2 1.1E+03 0.024 26.4 11.6 38 143-180 262-299 (1109)
453 PF04880 NUDE_C: NUDE protein, 22.1 81 0.0018 27.5 2.7 22 141-162 26-47 (166)
454 PF06424 PRP1_N: PRP1 splicing 22.0 72 0.0016 26.8 2.3 38 130-167 81-118 (133)
455 KOG1029 Endocytic adaptor prot 22.0 8.7E+02 0.019 26.8 10.4 8 73-80 266-273 (1118)
456 KOG0993 Rab5 GTPase effector R 22.0 4.7E+02 0.01 26.6 8.1 24 143-166 159-182 (542)
457 PF10168 Nup88: Nuclear pore c 21.9 5.5E+02 0.012 27.0 9.1 61 128-190 554-614 (717)
458 COG3879 Uncharacterized protei 21.9 4.5E+02 0.0098 24.4 7.6 19 138-156 63-81 (247)
459 PRK10361 DNA recombination pro 21.8 8.4E+02 0.018 24.7 10.5 68 113-180 24-94 (475)
460 PRK14158 heat shock protein Gr 21.8 3.1E+02 0.0066 24.4 6.2 29 134-162 49-77 (194)
461 PLN02320 seryl-tRNA synthetase 21.7 2.3E+02 0.0051 28.6 6.1 6 103-108 65-70 (502)
462 PF10828 DUF2570: Protein of u 21.6 4.1E+02 0.0088 20.9 7.9 46 134-179 34-79 (110)
463 PF07334 IFP_35_N: Interferon- 21.5 2.2E+02 0.0047 22.0 4.6 11 167-177 7-17 (76)
464 KOG4674 Uncharacterized conser 21.5 4.2E+02 0.0092 31.2 8.6 52 126-177 1237-1288(1822)
465 PRK10722 hypothetical protein; 21.4 3.5E+02 0.0075 25.2 6.7 8 185-192 202-209 (247)
466 PRK02224 chromosome segregatio 21.4 9.3E+02 0.02 25.0 11.2 6 7-12 456-461 (880)
467 cd00890 Prefoldin Prefoldin is 21.2 3.2E+02 0.0069 21.0 5.7 22 137-158 99-120 (129)
468 KOG4603 TBP-1 interacting prot 21.2 2.5E+02 0.0054 25.2 5.5 20 159-178 122-141 (201)
469 TIGR00414 serS seryl-tRNA synt 21.2 3.3E+02 0.0072 26.4 6.9 54 115-168 50-105 (418)
470 COG4372 Uncharacterized protei 21.2 8.7E+02 0.019 24.6 11.3 28 133-160 145-172 (499)
471 PF08537 NBP1: Fungal Nap bind 21.1 2.7E+02 0.0058 26.9 6.1 24 111-134 122-145 (323)
472 PRK03947 prefoldin subunit alp 21.1 4.4E+02 0.0095 21.1 7.2 29 136-164 105-133 (140)
473 PF10481 CENP-F_N: Cenp-F N-te 20.9 7.5E+02 0.016 23.7 9.1 70 108-177 15-91 (307)
474 KOG4001 Axonemal dynein light 20.6 4.4E+02 0.0096 24.4 7.1 27 156-182 231-257 (259)
475 PHA00728 hypothetical protein 20.4 1.4E+02 0.0031 25.4 3.7 24 139-162 5-28 (151)
476 PF13863 DUF4200: Domain of un 20.4 4.2E+02 0.009 20.6 7.7 30 151-180 79-108 (126)
477 PF03961 DUF342: Protein of un 20.4 5.3E+02 0.012 24.9 8.1 60 131-192 333-405 (451)
478 cd07596 BAR_SNX The Bin/Amphip 20.2 4.9E+02 0.011 21.3 8.4 53 126-178 111-170 (218)
479 PRK03947 prefoldin subunit alp 20.2 4.4E+02 0.0096 21.1 6.5 30 131-160 5-34 (140)
480 KOG0964 Structural maintenance 20.1 9.1E+02 0.02 27.2 10.3 82 116-199 416-508 (1200)
481 PF10168 Nup88: Nuclear pore c 20.1 6.9E+02 0.015 26.3 9.3 63 124-186 571-633 (717)
482 KOG0804 Cytoplasmic Zn-finger 20.0 3.6E+02 0.0078 27.4 6.9 51 131-181 367-417 (493)
483 KOG0249 LAR-interacting protei 20.0 1.1E+03 0.024 25.7 10.6 77 104-180 158-257 (916)
No 1
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.50 E-value=6.2e-14 Score=128.94 Aligned_cols=134 Identities=19% Similarity=0.099 Sum_probs=100.1
Q ss_pred cccccCCccchhhhhh----hhhhhhhchhHHHHhHhh-------------cch-hhhhccccccccCCCCCCCCCcccc
Q 026806 21 ASVFEESEESDESIDI----NRDIFATKREKINQMHEA-------------DDD-ILAQKNVTVCHSNTTNLASRDSAES 82 (233)
Q Consensus 21 ~~~~~~~~~~~~~~~~----~~~~~~~~r~~~~~m~~~-------------~d~-~~~q~n~t~c~g~~~~l~~~~~~~~ 82 (233)
..++-+.+++++..++ ++...+..+.++.++++. .+| ..++...|+ -++.+.+..
T Consensus 193 s~gvqglq~~~~T~S~~s~Q~~~t~Lq~~a~~~~~~~qi~~p~~qv~~~q~atgd~qs~~i~tg-------~sssps~tl 265 (348)
T KOG3584|consen 193 SDGVQGLQTLTMTNSGPSTQQGTTILQYTAQTIDGAQQILVPSNQVVVPQAATGDMQSYQIRTG-------YSSSPSATL 265 (348)
T ss_pred CCccccccccCcccCCCCCCCceeeEeecccccccceeeeccccceeecccccCcccchhhccc-------ccCCCcccc
Confidence 5678889999988777 777777777777666442 111 222222221 123333344
Q ss_pred ccccccCCCcccccCCCCCCcccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 83 MIKTTQNSGIVINESGTGARITKDGEELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 83 ~p~t~ln~g~~~~~~~~~~~~~~Dere~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
.|...+..++++..++.+. .||-.+||+-|.++|||+||.+|+|||+|+.+||.+|++|+.+|..|.+||..|.+.|
T Consensus 266 ~pg~~~~~~~~~ltsp~~~---aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 266 TPGVVMMGSPSYLTSPTQG---AEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred CCceEEecCcccccCCCcc---chhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 5666666666666666654 6888899999999999999999999999999999999999999999999999998877
Q ss_pred HH
Q 026806 163 GK 164 (233)
Q Consensus 163 ~~ 164 (233)
..
T Consensus 343 c~ 344 (348)
T KOG3584|consen 343 CH 344 (348)
T ss_pred hc
Confidence 54
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.38 E-value=3.7e-12 Score=91.74 Aligned_cols=63 Identities=46% Similarity=0.612 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 108 EELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENE 170 (233)
Q Consensus 108 re~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~ 170 (233)
++.++.+|+++||+||++||.||+.++++|+.+|..|..+|..|..++..|...+..|..+|.
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456789999999999999999999999999999999999999999999999999999988873
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.34 E-value=7.6e-12 Score=90.20 Aligned_cols=61 Identities=46% Similarity=0.619 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 109 ELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDEN 169 (233)
Q Consensus 109 e~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN 169 (233)
+.|+.||+++||+||++||.||+.|+.+|+.+|..|+.+|..|..++..|..++..|..+|
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3469999999999999999999999999999999999999999999998777666666554
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.31 E-value=8.1e-12 Score=122.30 Aligned_cols=72 Identities=32% Similarity=0.357 Sum_probs=69.2
Q ss_pred cccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 103 ITKDGEELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVE 174 (233)
Q Consensus 103 ~~~Dere~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~ 174 (233)
..+|.+..||+.||++|||||..||+|||+|+..||.++..|.+||..|+.|...|++++..|+.||.+||.
T Consensus 273 ~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 273 VGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred CccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 457999999999999999999999999999999999999999999999999999999999999999999964
No 5
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.12 E-value=4.6e-10 Score=101.47 Aligned_cols=79 Identities=28% Similarity=0.412 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhH
Q 026806 109 ELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYL 188 (233)
Q Consensus 109 e~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L 188 (233)
|+|-+|||++||.+|+-+|-|||+++++++.++..|..||+.|..+...|++..+.|..+|.+|..+|..+. ..+..|
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~--~~l~~~ 144 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLR--QELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHhh
Confidence 567889999999999999999999999999999999999999999999999999999999999999999775 444444
Q ss_pred H
Q 026806 189 E 189 (233)
Q Consensus 189 ~ 189 (233)
.
T Consensus 145 ~ 145 (292)
T KOG4005|consen 145 K 145 (292)
T ss_pred H
Confidence 3
No 6
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.01 E-value=2.7e-09 Score=74.95 Aligned_cols=51 Identities=41% Similarity=0.595 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 109 ELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 109 e~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
+.++.||+ +||+||++||.||+.++.+|+.+|..|+.+|..|..+|..|..
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34577777 9999999999999999999999999999999999998887764
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.82 E-value=4.7e-09 Score=101.51 Aligned_cols=68 Identities=28% Similarity=0.377 Sum_probs=59.3
Q ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 105 KDGEELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 105 ~Dere~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.+|+.+||.|||++|.+||+.||+|||+|++.||.+|....++|+.|.+++..|. .+|..|-++|..|
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le-------~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELE-------LSNRSLLAQLKKL 312 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHh-------hccHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999998887654 5666666665555
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.00 E-value=8.2e-08 Score=74.03 Aligned_cols=64 Identities=33% Similarity=0.453 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 106 DGEELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDEN 169 (233)
Q Consensus 106 Dere~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN 169 (233)
+....|..||..+||.+|+.||.||..++.+|+.++..|+.+...|..++..+...+..+...+
T Consensus 25 q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~ 88 (92)
T PF03131_consen 25 QIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKL 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999998888887777776665554444333
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.98 E-value=3.4e-05 Score=70.72 Aligned_cols=59 Identities=34% Similarity=0.503 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 106 DGEELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGK 164 (233)
Q Consensus 106 Dere~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~ 164 (233)
+.+-.|-+|.++.||++|.+||.||.+|+..||.+|..|..+|..|..++..|.+...+
T Consensus 201 ~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e 259 (279)
T KOG0837|consen 201 DQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAE 259 (279)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 34444445558999999999999999999999999999999999999888877655443
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.73 E-value=0.00034 Score=64.97 Aligned_cols=61 Identities=28% Similarity=0.312 Sum_probs=47.8
Q ss_pred HHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 112 LAKR-RQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 112 R~RR-k~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+.|| ++.|.-+|-|.|+||+++.+.|+.++..|+.+|.+|+.++..| +.|-..||+-+.+.
T Consensus 227 ~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~l-------erEI~ylKqli~e~ 288 (294)
T KOG4571|consen 227 KLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASEL-------EREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4444 5666667999999999999999999999999999999887765 45555666555443
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.18 E-value=0.0043 Score=56.49 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=46.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 114 KRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 114 RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
.|+.+|=++|||||.+.+...+++..+|..|+.||..|+.+|..|+ .|+..|+.-+..
T Consensus 197 err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~-------~el~~~~~~~~~ 254 (269)
T KOG3119|consen 197 ERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLK-------KELATLRRLFLQ 254 (269)
T ss_pred HHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 3445588999999999999999999999999999999998887765 445555544443
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.87 E-value=0.011 Score=49.52 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 109 ELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 109 e~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
-.|..||-++||--|.-+|-|....-.+||.+-..|.++..+|+.++..+ ..|-..|+.....|.
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~-------~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRL-------RRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 45677889999999999999999888888877777776666666555544 345555555555554
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=95.51 E-value=0.058 Score=54.66 Aligned_cols=60 Identities=27% Similarity=0.298 Sum_probs=49.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 114 KRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 114 RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
||+=+||.+|+++|+||-.-+..||.+|..|+.+-.+|.++-..+. .+-.+++.+|..|+
T Consensus 493 RRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d-------~~L~~~kqqls~L~ 552 (604)
T KOG3863|consen 493 RRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELD-------STLGVMKQQLSELY 552 (604)
T ss_pred ccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999988887665443 44455666666665
No 14
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.13 E-value=0.13 Score=41.43 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..+..|+.++..|-.+...|+..+..|.++...|..||..||..|..+.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567778888888888888888888888888888888888888887764
No 15
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=94.79 E-value=0.18 Score=40.96 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.+..|+.++..|-.+...|+..+..|.++...|..||..||..|..+
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888888888888888888888888888888888888875
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.52 E-value=0.29 Score=36.88 Aligned_cols=47 Identities=28% Similarity=0.327 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
-++.|+.+|..+-.....|..++..|.++...|..+|..|+.+...|
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45667777766666666666666666665444444444444444443
No 17
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.18 E-value=0.45 Score=35.85 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYL 188 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L 188 (233)
..+..+-..+..|+.++..|+.+...|.+....|..||..|+.+-..+. +.|..|
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~--~rl~~L 65 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ--ERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 3455666777788888888888888888888888899999988887775 444444
No 18
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.97 E-value=0.26 Score=38.21 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
+.=|.-+|+.|+.+|..|..++..+......|..||..|+.+...+. +.|..|-
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq--erLr~LL 73 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 34566788888888888888888888888889999999999988876 5555554
No 19
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.86 E-value=0.51 Score=38.01 Aligned_cols=53 Identities=23% Similarity=0.284 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEA 190 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~ 190 (233)
+|=.++..|+.....|..++..|...+..|..||..|+.+...|+ +.+..+..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr--~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR--ERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence 677889999999999999999999999999999999999999998 66666654
No 20
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.72 E-value=0.31 Score=37.40 Aligned_cols=47 Identities=30% Similarity=0.338 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+.-|+-+|+.|+.+|..|..+.+.++.....|+.||..|+.+-..++
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999887765
No 21
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.35 E-value=0.64 Score=34.70 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.++.|-.....|+.||..|+.++..+...-..|...|..-+.++..+
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666555555555555555555555555554
No 22
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=93.05 E-value=0.56 Score=46.61 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=47.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 126 SRMRKQE-EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 126 SR~RKq~-~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
|..-.++ ...+||.+++.|+.|.+.|......+.+++..++.||..|+.++..+
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444 78899999999999999999999999999999999999999999653
No 23
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=93.03 E-value=1.3 Score=38.86 Aligned_cols=87 Identities=24% Similarity=0.221 Sum_probs=49.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Q 026806 112 LAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGK--------------LKDENEAIVEELK 177 (233)
Q Consensus 112 R~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~--------------L~~EN~~LR~el~ 177 (233)
-.+.++....+-+-.+.+.+.+...|+.++..-..++..+..++..|...... ...|..+|+..+.
T Consensus 90 ~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~ 169 (190)
T PF05266_consen 90 FLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAE 169 (190)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777766665533333333333333333333 3344555555555
Q ss_pred hhcCcchhhhHHHhcCCCCCCCCcchhhhhhhhh
Q 026806 178 LRHRADAISYLEALMPHNLMNGESYRREENLALF 211 (233)
Q Consensus 178 ~L~g~~~vs~L~~~~~~~~~~~~~~~~~~~l~~~ 211 (233)
.+- +.+.+....| ...+-+||
T Consensus 170 ~l~--~~~~~~e~~F-----------~~~~aaPW 190 (190)
T PF05266_consen 170 ALK--EEIENAELEF-----------QSVAAAPW 190 (190)
T ss_pred HHH--HHHHHHHHHH-----------HHHhcCCC
Confidence 554 5566666666 66677777
No 24
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.92 E-value=0.92 Score=40.21 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
++.++.+...+..|+.+|+.|..++..++.+...|..+|..++..+.
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666677777777777777777777777777777777765543
No 25
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=92.71 E-value=1.1 Score=36.33 Aligned_cols=54 Identities=30% Similarity=0.360 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEA 190 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~ 190 (233)
.+|=.+|..|+.....|..++..|......|..||..|+.+-..|+ +.+..+..
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr--~~l~~~~~ 57 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLR--ERLEELEA 57 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhc
Confidence 3677889999999999999999999999999999999999999887 66666643
No 26
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.56 E-value=0.37 Score=33.30 Aligned_cols=38 Identities=34% Similarity=0.435 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 143 ELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 143 ~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+|+.+-..|+.....|...+..|..||..|++++..|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888888888888899999999888875
No 27
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=92.18 E-value=0.94 Score=33.85 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+.+++-|..++.....+|..|..+-.....++..+..+|..|+.++..+.
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888877777777777777777777777665
No 28
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=92.06 E-value=1.3 Score=33.08 Aligned_cols=54 Identities=20% Similarity=0.205 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
+..|+.+|..|-..-..|+.++..|.++...+..|+..|..+...-+ +.|..+-
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar--~rvEamI 55 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQAR--QKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 56788999999999999999999999999999999999988877654 3444443
No 29
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.70 E-value=1.6 Score=40.29 Aligned_cols=60 Identities=28% Similarity=0.297 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhc
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALM 192 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~ 192 (233)
+..++++..+-..|..++..|..++..+++++..|+.||+.|...+..+. ..+.+|..-+
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~--~ev~~L~~r~ 200 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP--GEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch--hHHHHHHHHH
Confidence 45577777777778888888888888888899999999999988888775 3455555443
No 30
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=91.56 E-value=1.5 Score=33.89 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+.-++|..++..|+.....|..++..+.+.+..|..||..|..=|..|-
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788888999999999999999999999999999999998888863
No 31
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=91.23 E-value=0.89 Score=33.58 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhc
Q 026806 145 KAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALM 192 (233)
Q Consensus 145 ~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~ 192 (233)
......+..++..+..+...+..||..|+.++..|..|+.|..+-..-
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~~ 70 (85)
T TIGR02209 23 QHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKKQ 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 445567777888888888888999999999999999888888777543
No 32
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=91.12 E-value=1.1 Score=38.74 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 140 AVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 140 ~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
....|+.||..|..++..|+.++..|..||..|..++..+.
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888888888888888888888888877776664
No 33
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=91.04 E-value=0.91 Score=37.30 Aligned_cols=46 Identities=33% Similarity=0.304 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
.+..|+.++.+|-++...|+..+..|.+....|.-||..||.+|..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 5678888888888888888888888888888888888888888887
No 34
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=91.03 E-value=0.59 Score=42.86 Aligned_cols=40 Identities=33% Similarity=0.370 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Q 026806 140 AVEELKAESAVLKDELLSLSAKYG----KLKDENEAIVEELKLR 179 (233)
Q Consensus 140 ~V~~L~~EN~~L~~el~~L~~~~~----~L~~EN~~LR~el~~L 179 (233)
.+..|..||.+|+.++..|..+.. .+..||.+||..|.--
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 445667777777777665533333 4899999999976653
No 35
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.02 E-value=5.1 Score=34.41 Aligned_cols=65 Identities=29% Similarity=0.296 Sum_probs=43.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 115 RRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 115 Rk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.....+..-+.-.......+.++..-+..|..|...|.-++..+.+++..|..||..|-.+....
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555667777777777777777777777777888888888888876666554
No 36
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=90.91 E-value=1.3 Score=31.77 Aligned_cols=54 Identities=26% Similarity=0.258 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhhhHHHhcCCCCCCCCc
Q 026806 148 SAVLKDELLSLSAKYGKLKDENEAIVEELKLR-HRADAISYLEALMPHNLMNGES 201 (233)
Q Consensus 148 N~~L~~el~~L~~~~~~L~~EN~~LR~el~~L-~g~~~vs~L~~~~~~~~~~~~~ 201 (233)
...+..++..|..+...+..+|..|+.++..+ ..|+.|..+-..--|=.++||-
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~ 73 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEI 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCE
Confidence 34455666666666666777777778888887 5566676666533344444443
No 37
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.58 E-value=6.6 Score=32.19 Aligned_cols=78 Identities=26% Similarity=0.347 Sum_probs=58.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 110 LKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 110 ~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
.....|=..-||..-....++...++.|+..+..|+.++..+..++..+......+..++..+...+.... +.+..|.
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k--ee~~klk 121 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK--EELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 34555667778888888888888888888888888888888888888888887777777777766666654 4444444
No 38
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=90.41 E-value=0.73 Score=33.08 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
|++.+++||+.++ .++-..=...-......+..|..||..|+++|..++
T Consensus 1 kw~~Rl~ELe~kl---kaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 1 KWLLRLEELERKL---KAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred CHHHHHHHHHHHH---HHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556667776644 333333223344556677778888888888887654
No 39
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=89.97 E-value=7.7 Score=30.14 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 107 GEELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 107 ere~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+.-.++..+.+.+=|++=..|.-+.....+|+.++..|..+...|-.++.....++..|+.-|..+...|...
T Consensus 7 e~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888999999888888888888999999999999999999999999999999999999999988764
No 40
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=89.41 E-value=1.6 Score=34.73 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-cchhhhHHHhcCCCCCCCCc
Q 026806 157 SLSAKYGKLKDENEAIVEELKLRHR-ADAISYLEALMPHNLMNGES 201 (233)
Q Consensus 157 ~L~~~~~~L~~EN~~LR~el~~L~g-~~~vs~L~~~~~~~~~~~~~ 201 (233)
.+.++...+..+|..|+.++..|.. ++.|..+-+.--|=+++||-
T Consensus 38 ~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEi 83 (105)
T PRK00888 38 AQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGET 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCE
Confidence 3333333334455555555555543 23344444333344444443
No 41
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=88.72 E-value=2.9 Score=30.81 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+++.+||.+++-++.-...|-..+......+..|..+...|..++..+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999999998875
No 42
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=88.56 E-value=1.5 Score=42.30 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 126 SRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 126 SR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
--+|-+.+...||.-+..++.||+.|..+++.+.++|.+.+.|+..|-.++.+.
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 446677888899999999999999999999999999999999999997777664
No 43
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=88.55 E-value=1.7 Score=33.10 Aligned_cols=48 Identities=23% Similarity=0.226 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHh
Q 026806 144 LKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEAL 191 (233)
Q Consensus 144 L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~ 191 (233)
...+...+..++..+..+...+..||..|+.++..+..|+.|..+-..
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA~~ 80 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIARE 80 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 455677788889999999999999999999999999999988887763
No 44
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.52 E-value=8.8 Score=34.05 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
++..+|+.+++.+......|..++..|.+++..+..|+..|++++..+.
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666777777777777777777777777766654
No 45
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=86.23 E-value=3.8 Score=36.60 Aligned_cols=44 Identities=32% Similarity=0.351 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
-..+.+|.++.+.|+.||..|..++.. +..+..||.+||..|.-
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~----~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQE----LEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC
Confidence 344455555555555555555554443 34788999999987664
No 46
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.21 E-value=2.7 Score=38.96 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhcCCCCCCCCcchhhh
Q 026806 127 RMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALMPHNLMNGESYRREE 206 (233)
Q Consensus 127 R~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~~~~~~~~~~~~~~~ 206 (233)
-..+...+.+|+..+..++.+...|..++..+..+...+..++..+..++..+. ..|..|...+. +-... -..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~--~eI~~~~~~I~----~r~~~-l~~ 105 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ--KEIAELKENIV----ERQEL-LKK 105 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH----HHHHH-HHH
Confidence 445567788888888888888888888888888888888888888888888887 55666665551 10111 112
Q ss_pred hhhhhhhccccccccccccc
Q 026806 207 NLALFQSRYASSSSLNVKAS 226 (233)
Q Consensus 207 ~l~~~q~~~~~~~~~~~~~~ 226 (233)
-+...|.++.+.+-++|-..
T Consensus 106 raRAmq~nG~~t~Yidvil~ 125 (265)
T COG3883 106 RARAMQVNGTATSYIDVILN 125 (265)
T ss_pred HHHHHHHcCChhHHHHHHHc
Confidence 24567888888777777554
No 47
>PRK02119 hypothetical protein; Provisional
Probab=86.02 E-value=6.6 Score=29.49 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+++.+||.+++-++.-...|-..|..-.+.+..|..+-..|..++..+.
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36788899999999988888888888888888888888888888887754
No 48
>PF15294 Leu_zip: Leucine zipper
Probab=85.60 E-value=2.6 Score=39.31 Aligned_cols=44 Identities=30% Similarity=0.384 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
|..++..|+.||..|+.++..+..++..+..|+..|..+|..++
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq 173 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQ 173 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999986
No 49
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.69 E-value=10 Score=30.98 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
++.|+.+++.++.+...+..+...|...+..+..-+..++.++.
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 50
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=84.54 E-value=3.6 Score=32.74 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 127 RMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 127 R~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
-.+.++++.+++.+++.|+.+|..|..++..|+..
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34556777888888888888888888888887653
No 51
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=84.48 E-value=0.052 Score=51.82 Aligned_cols=69 Identities=28% Similarity=0.318 Sum_probs=56.2
Q ss_pred ccchHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 104 TKDGEELKLAKRRQSNRESARR---SRMRKQEEFKKLQKAVEELK-AESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 104 ~~Dere~KR~RRk~sNRESARR---SR~RKq~~leeLe~~V~~L~-~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+..+.+.|+..|++.|+-+|.+ +|.|++....+|+.+|+.|+ ..+..|..++.. |..|+..|...+..-
T Consensus 147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~-------Lqne~~~l~~~l~~h 219 (395)
T KOG1414|consen 147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISP-------LQNEADHLEKELNTH 219 (395)
T ss_pred CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccc-------cccHHHHHHHHHhcc
Confidence 4567788899999999999999 99999999999999999999 888886665554 445666666555553
No 52
>smart00338 BRLZ basic region leucin zipper.
Probab=84.47 E-value=5 Score=28.60 Aligned_cols=38 Identities=29% Similarity=0.360 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 139 KAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
..+..|+.+...|..++..|..++..|..|+..|+.++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666666666666666654
No 53
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=84.04 E-value=5.6 Score=30.11 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhc
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYG--------KLKDENEAIVEELKLRH 180 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~--------~L~~EN~~LR~el~~L~ 180 (233)
+.+.+..+..|+.||=.|+-+|-.|.+... .+..+|-.|+.++..+.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~ 56 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLK 56 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999988887776 45778888888888876
No 54
>PRK02793 phi X174 lysis protein; Provisional
Probab=83.61 E-value=10 Score=28.39 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+++.+||.+++-++.-...|-..|...+..+..|..+-..|..++..+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5788999999999988888888888888888888888888888777754
No 55
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.14 E-value=4.8 Score=36.39 Aligned_cols=47 Identities=26% Similarity=0.422 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
+.++++...+++.++.++..|..+.+.+...+..|..||+.|+.++.
T Consensus 164 ~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 164 ETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34444455555555566666666666666677777777777766654
No 56
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=83.00 E-value=9.6 Score=28.46 Aligned_cols=47 Identities=26% Similarity=0.234 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+++..+.....|..|+.....++..+...+..|..||..|+.++...
T Consensus 20 k~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 20 KNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566667777777777777777777777777777777777654
No 57
>PF15058 Speriolin_N: Speriolin N terminus
Probab=82.79 E-value=3.2 Score=37.15 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
++.|..+++.|-.||..|++.++.+ .||.+||.-|.+-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL~ea 44 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSALGEA 44 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHh
Confidence 5778899999999999999888765 5899998876553
No 58
>PRK00295 hypothetical protein; Provisional
Probab=82.49 E-value=13 Score=27.58 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+++.+||.+++-++.-...|-..|......+..|..+-..|..++..+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999888888888888888887777774
No 59
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=82.48 E-value=2.5 Score=31.26 Aligned_cols=39 Identities=23% Similarity=0.469 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 147 ESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 147 EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
|...|+.+|..|.++...|+.||..||..+ .|+.++.|+
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~----~pe~l~q~~ 53 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNA----SPEQLAQLQ 53 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----SSSSSTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHH
Confidence 445566667777777777788898887643 344444443
No 60
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.23 E-value=13 Score=32.40 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCcchhhhHHH
Q 026806 126 SRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR--HRADAISYLEA 190 (233)
Q Consensus 126 SR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L--~g~~~vs~L~~ 190 (233)
.-.+..+.+.+|+.+++.+......- .+-..+.+.+..|..++..|+.++..+ ..|+.|..|..
T Consensus 77 ~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 77 EIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 33334444555555555553322222 233334566677777777777777744 33555665554
No 61
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=82.08 E-value=6.5 Score=32.40 Aligned_cols=45 Identities=29% Similarity=0.332 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
++=.+|..|+...-.|..++..|.+....+..||..|+-+...|+
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 455688899999999999999999999999999999999999887
No 62
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=81.97 E-value=6.3 Score=32.66 Aligned_cols=43 Identities=23% Similarity=0.351 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhc
Q 026806 146 AESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALM 192 (233)
Q Consensus 146 ~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~ 192 (233)
.|...|+.+|..|.++...|+.||.-||. +..|+-++.|..+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~----~~spe~L~ql~~~~ 109 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKT----LASPEQLAQLPAQL 109 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hCCHHHHHHHHHhc
Confidence 34444556666666677777788887764 45566677666554
No 63
>PRK04325 hypothetical protein; Provisional
Probab=81.88 E-value=13 Score=28.01 Aligned_cols=49 Identities=6% Similarity=0.066 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+++.+||.+++-++.-...|-..|..-...+..|..+-..|..++..+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4588899999999988888888888888888888888777777777653
No 64
>PRK00736 hypothetical protein; Provisional
Probab=81.69 E-value=13 Score=27.41 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+++.+||.+++-++.-...|-..|..-...+..|..+-..|..++....
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999888888888888888888887754
No 65
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.69 E-value=5 Score=33.54 Aligned_cols=51 Identities=33% Similarity=0.412 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDEL--LSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el--~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
++++.+|..++..|+.+...|...+ ..|......|..|+..|..+|..|++
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666666554 45677778888888888888887764
No 66
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=81.57 E-value=2.7 Score=36.50 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
|+++|.++++--..|.-|..||. +-..|..++++||.|+.+|
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666662 3444445555555555444
No 67
>PRK04406 hypothetical protein; Provisional
Probab=81.37 E-value=13 Score=28.06 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+++.+||.+++-++.-...|-..|..-+..+..|..+-..|..++..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677888888888888888887777777777777777777777766643
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.33 E-value=14 Score=38.44 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
+-+..+..+|+.|..+|+.++....+++..++.|...||..
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888888888888888888888777764
No 69
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.23 E-value=19 Score=32.03 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--cchhhhHHHhc
Q 026806 126 SRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR--ADAISYLEALM 192 (233)
Q Consensus 126 SR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g--~~~vs~L~~~~ 192 (233)
-+..-.+.+..|..+++.|+..|.+|...+..+.+....|..+-..+..-...+.+ ..-+..|....
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v 118 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFV 118 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566667777777777777777777777777777777777666666556554 23466777644
No 70
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=81.12 E-value=25 Score=35.81 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=39.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 115 RRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 115 Rk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
..++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|..+....
T Consensus 154 eL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~ 218 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555556666666666666666666666666666666666666666665555544
No 71
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=80.91 E-value=9.5 Score=27.14 Aligned_cols=24 Identities=46% Similarity=0.538 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L 158 (233)
..|+.+...|..++..|..++..|
T Consensus 36 ~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 36 EELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444443333333
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.76 E-value=10 Score=31.60 Aligned_cols=49 Identities=29% Similarity=0.405 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+..+++|+.++..|..++..+-.+|..|+.+...|+.+-..|...|...
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888888777777777777777665
No 73
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=80.69 E-value=28 Score=28.00 Aligned_cols=65 Identities=20% Similarity=0.101 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-chhhhHHHhcCCCCCCCCcc
Q 026806 138 QKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRA-DAISYLEALMPHNLMNGESY 202 (233)
Q Consensus 138 e~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~-~~vs~L~~~~~~~~~~~~~~ 202 (233)
.--...+-.....|...+..+..++..|..+|..|++++..|... +-|+.......+-+++||-+
T Consensus 42 ~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~~~~~gEi~ 107 (117)
T COG2919 42 AWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELGMSKPGEIF 107 (117)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCCCCCCCEE
Confidence 333344455555666666677777788888999999999998876 77888888888888888866
No 74
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.68 E-value=30 Score=30.24 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 130 KQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
.+.++.+++.++..|+.+...++.++...++++..+...+...+..+
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555444444444444444433
No 75
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=80.59 E-value=6.5 Score=36.62 Aligned_cols=59 Identities=34% Similarity=0.322 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 119 NRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 119 NRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.|.-||-+.+ -..+.+|+.+-..|+.||..|+.....|..+.++|..+-..|+++|..+
T Consensus 86 DrKKaRm~em--e~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 86 DRKKARMEEM--EYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 4444444333 2357899999999999999999999999999999999999999988887
No 76
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=80.54 E-value=5.8 Score=37.63 Aligned_cols=46 Identities=35% Similarity=0.439 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+.|..+++.|+++|..|+.++.....++..|..+|..||.....++
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQ 68 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888888888888888888777664
No 77
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.82 E-value=31 Score=28.37 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 138 QKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 138 e~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
..++..|+.+...|..+...+.+-+..-..++.+|+..+.++
T Consensus 67 ~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 67 KKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 345555555555555555555566666666677777666664
No 78
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.80 E-value=11 Score=31.42 Aligned_cols=57 Identities=33% Similarity=0.460 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcCcchhhhHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKY--GKLKDENEAIVEELKLRHRADAISYLEA 190 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~--~~L~~EN~~LR~el~~L~g~~~vs~L~~ 190 (233)
.++.+|..++..|+.++..|..++..|.... ..|..+...|+.++..+. +.+..|+.
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~--~kL~~l~~ 137 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE--EKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 3477888888888888888888888887554 677778888888888876 56666765
No 79
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=79.76 E-value=11 Score=26.85 Aligned_cols=30 Identities=43% Similarity=0.602 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~el~~L 158 (233)
..+..+.+|+.+++.|+.+|..|..++..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667788888888888888888888776
No 80
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=79.70 E-value=3.4 Score=34.24 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLS 157 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~ 157 (233)
..-+++|..++..|+-||..|+++|..
T Consensus 2 ~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 2 DMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445777888877777777777766653
No 81
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.64 E-value=9.4 Score=38.18 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
+..|..+-+.|..||.+|+++...+.
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~~id 100 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQSID 100 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 44555555566666666655444443
No 82
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.62 E-value=13 Score=33.11 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
.-|..++..|+.+|..|..+...+..++..|..+|..|+.++-.
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~ 141 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE 141 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 36778888888888888888888888888888888888888743
No 83
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=79.44 E-value=3.6 Score=39.83 Aligned_cols=32 Identities=31% Similarity=0.302 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 140 AVEELKAESAVLKDELLSLSAKYGKLKDENEAIV 173 (233)
Q Consensus 140 ~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR 173 (233)
+...|+.||..|++|+..|+.+..+| ||..||
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 44456666666666666666666666 444444
No 84
>PF02173 pKID: pKID domain; InterPro: IPR003102 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner. CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB [].; GO: 0005515 protein binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1KDX_B.
Probab=78.90 E-value=1.2 Score=30.73 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=16.3
Q ss_pred hhhhhhhhhchhHHHHhHh
Q 026806 35 DINRDIFATKREKINQMHE 53 (233)
Q Consensus 35 ~~~~~~~~~~r~~~~~m~~ 53 (233)
+-+++-.+++||||.+||+
T Consensus 9 ~~krReiLsRRPSYRKIln 27 (41)
T PF02173_consen 9 SQKRREILSRRPSYRKILN 27 (41)
T ss_dssp HHHHHHHHTTSTHHHHHHH
T ss_pred hHHHHHHHhhCchHHHHHH
Confidence 3367888999999999999
No 85
>PRK11637 AmiB activator; Provisional
Probab=78.57 E-value=35 Score=32.56 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
...+..|+.++..+..+...+..+|..+..+...+..+=..++.++...
T Consensus 74 ~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 74 LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444444455544444444444444444444443
No 86
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.30 E-value=9.3 Score=32.83 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
+...++..|+.++..|..++..+...+.....-|..|+.++..
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~ 155 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQA 155 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444433333333344444433333
No 87
>smart00340 HALZ homeobox associated leucin zipper.
Probab=78.13 E-value=4.2 Score=28.38 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 154 ELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 154 el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
....|.+.|..|..||.+|..++.+|+.
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888999999988888763
No 88
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=78.12 E-value=24 Score=25.77 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
+.+++|...|..|.....+|...+..|+........|=.+--.+|
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777766666655544444443
No 89
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=77.62 E-value=11 Score=38.45 Aligned_cols=61 Identities=30% Similarity=0.409 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 121 ESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 121 ESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
+.+-+.+.--.+.+.++...+..|+++...++..+..|......|..||..|+.+|..++.
T Consensus 130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444445555567778888888999999999999999999999999999999999988875
No 90
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=77.26 E-value=7.7 Score=30.46 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhc
Q 026806 142 EELKAESAVLKDELLSLSA------KYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 142 ~~L~~EN~~L~~el~~L~~------~~~~L~~EN~~LR~el~~L~ 180 (233)
.-+..+|..|..+|..|+. .......||.+|+.++..++
T Consensus 20 ~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 20 SYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ 64 (86)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777664 45678889999999998875
No 91
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=76.80 E-value=2.9 Score=28.89 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 141 VEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 141 V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
...|-..|..|..++..|...+..|..||..||.++
T Consensus 9 n~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 9 NRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 344555666677777777777777777777777665
No 92
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.60 E-value=14 Score=34.32 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
+++|+.+++.++.+...|..++.+|.+.+..+..|-..|+.+..+|..
T Consensus 158 leele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 158 LEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 444445555555555555555555556666666677777777766643
No 93
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=76.50 E-value=12 Score=30.63 Aligned_cols=44 Identities=23% Similarity=0.186 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
|-.+|-.|+.-...|..++..+.++..+|.+||++|-+-+..|-
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 34455556666666777777777777888889998888777764
No 94
>PHA03162 hypothetical protein; Provisional
Probab=76.42 E-value=1.9 Score=36.43 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~el~ 156 (233)
+++.-+++|..++..|+-||..|+++|.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999988888888873
No 95
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=76.24 E-value=15 Score=32.85 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+|-..|+.|+.-|++|..++..|......++..|..|..++..|+
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~ 49 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLR 49 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555543
No 96
>PRK11637 AmiB activator; Provisional
Probab=76.22 E-value=32 Score=32.85 Aligned_cols=51 Identities=8% Similarity=0.107 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 130 KQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+..+.+++.++..|..+...+..+|..+..++..+..+=..|..+|..+.
T Consensus 66 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 66 QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555554
No 97
>PRK00846 hypothetical protein; Provisional
Probab=76.08 E-value=23 Score=27.20 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+++.+||.+++-.+.-...|-..+.........|..+-..|..+|.++.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888888888888888888888888888888877777777777754
No 98
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=76.05 E-value=1.6 Score=34.36 Aligned_cols=47 Identities=30% Similarity=0.469 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
.+++.|...+..|..+|..|..++..|..++..+...+..|+..|..
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~ 71 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence 57888999999999999999999999888888888888887776644
No 99
>PHA03155 hypothetical protein; Provisional
Probab=74.78 E-value=4.1 Score=33.66 Aligned_cols=25 Identities=36% Similarity=0.620 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLS 157 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~ 157 (233)
-+++|+.++..|+-||..|++++..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3678888888888888877777743
No 100
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=73.84 E-value=36 Score=33.69 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=57.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 026806 111 KLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRA 182 (233)
Q Consensus 111 KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~ 182 (233)
++.+-.+++=+.-.++....+.....|+.++..|+.+...|..++.........+...+..+...+..|.+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 455666677777777777778888889999999999998888888888888888888888888887777653
No 101
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=72.86 E-value=16 Score=33.21 Aligned_cols=47 Identities=9% Similarity=0.191 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
-+-+|..+++.|+.|...|+-.|+.+..++..+......|-.+|..+
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888888888888888888888888877777664
No 102
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.81 E-value=57 Score=27.56 Aligned_cols=64 Identities=25% Similarity=0.259 Sum_probs=33.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 115 RRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 115 Rk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
-.+.|++.+-.=-.-+++.+..|+.++..+..+...|..++..++..-..|..+=...+.++..
T Consensus 35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~e 98 (140)
T PF10473_consen 35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSE 98 (140)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665555555666666666666655555555555555444444443333333333333
No 103
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=72.44 E-value=68 Score=29.42 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=27.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 114 KRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 114 RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L 158 (233)
+++..-.+.++..=.-++..+++|+.+|..++.+.+.++.++..+
T Consensus 34 ~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 34 KKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666677777766666666666555554
No 104
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=72.37 E-value=21 Score=28.15 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEA 171 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~ 171 (233)
.|-..-+.+|..|+.+|..|..++..|..++.....|-..
T Consensus 42 sYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 42 SYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555555555555544444444433
No 105
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.98 E-value=25 Score=28.85 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
.++.-|..+++.|..+-..|..+|-.|....
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 106
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.91 E-value=21 Score=33.67 Aligned_cols=81 Identities=23% Similarity=0.235 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhhHH-----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q 026806 107 GEELKLAKRRQSNRE-----SARRSRMRK-QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR- 179 (233)
Q Consensus 107 ere~KR~RRk~sNRE-----SARRSR~RK-q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L- 179 (233)
+-|+|-++=|++|-. ++-....-- +..+++|+..+..|+.++.....++.++.+.+..|..|-..||.+|...
T Consensus 88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rd 167 (302)
T PF09738_consen 88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRD 167 (302)
T ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888742 333333333 5678899999999999999999999999999999999999999998854
Q ss_pred -----cCcchhhh
Q 026806 180 -----HRADAISY 187 (233)
Q Consensus 180 -----~g~~~vs~ 187 (233)
+|.--++.
T Consensus 168 eli~khGlVlv~~ 180 (302)
T PF09738_consen 168 ELIEKHGLVLVPD 180 (302)
T ss_pred HHHHHCCeeeCCC
Confidence 66555555
No 107
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=71.49 E-value=25 Score=27.18 Aligned_cols=50 Identities=34% Similarity=0.438 Sum_probs=34.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 131 QEEFKKLQ-KAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 131 q~~leeLe-~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
...++.++ ..-+.|..+...|...|..|..+...+..||..|+.+-.-|+
T Consensus 7 ~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 7 SEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445454 336677777777777777777788888888888877777765
No 108
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=71.39 E-value=57 Score=32.21 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=24.1
Q ss_pred ccccccCCCcccccCCCCCCcccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 026806 83 MIKTTQNSGIVINESGTGARITKDGEELKLAKRRQSNRESARRSRMRKQEEFKKLQ 138 (233)
Q Consensus 83 ~p~t~ln~g~~~~~~~~~~~~~~Dere~KR~RRk~sNRESARRSR~RKq~~leeLe 138 (233)
++++....++.....++..+........|.+|||..--|==||.|..=...+.||-
T Consensus 201 ~~~~~~s~~s~~~~~~rt~~~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg 256 (411)
T KOG1318|consen 201 TGHDSASCPSQLSIGPRTHPKTDATALERDRRKRDNHNEVERRRRENINDRIKELG 256 (411)
T ss_pred CccccccCccccCCCCCCCCCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444555444444333222233333334444444545555554444444443
No 109
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=71.32 E-value=16 Score=31.05 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHh
Q 026806 151 LKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEAL 191 (233)
Q Consensus 151 L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~ 191 (233)
|..+...|.++++.|..||.+++.++..+. .....|...
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k--~k~e~l~~~ 117 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYK--SKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhh
Confidence 333334444455566789999999888876 334444433
No 110
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=70.91 E-value=67 Score=30.51 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 108 EELKLAKRRQSNRESARRSRMRK---QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKD 167 (233)
Q Consensus 108 re~KR~RRk~sNRESARRSR~RK---q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~ 167 (233)
.-.||+.|+..==.--.|-|..+ .-++++|+.+-..|+..-..|.++|+.|++-+.++..
T Consensus 228 ~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 228 LRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667663222233333333 3456677788888888888888888888777665543
No 111
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=70.61 E-value=24 Score=30.78 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLK 166 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~ 166 (233)
..+.+|..++..|+.+|..|..++..+.+.|..|.
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555444444444444443
No 112
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=70.55 E-value=78 Score=28.12 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
|..++..|..+...|...+..+.........+-..|..++..
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444444433
No 113
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=70.50 E-value=55 Score=28.43 Aligned_cols=57 Identities=25% Similarity=0.443 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHh
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEAL 191 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~ 191 (233)
..+|+.++..|+.++..|..++..|..++..+...+..+++.....+ -+.|..|...
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~-~~ei~~lk~~ 178 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKH-QEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 57888999999999999999999999999999888888776655544 3456666644
No 114
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=70.15 E-value=20 Score=26.14 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKL 165 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L 165 (233)
+++||.++..+......++.+++.+......+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655555555555554444444444333
No 115
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=70.11 E-value=8.2 Score=30.12 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 130 KQEEFKKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
|+.+++.|..++..++.+|..|..+|..+++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678889999999999999999999887653
No 116
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=70.11 E-value=23 Score=25.80 Aligned_cols=33 Identities=12% Similarity=0.360 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKL 165 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L 165 (233)
.+..|+..+..++.+|+.|+..+..+.+....|
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777777666665443
No 117
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=69.80 E-value=12 Score=32.04 Aligned_cols=46 Identities=30% Similarity=0.421 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+|..+|+.|+.+|..|...+..+..+...+......|+.+...++
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 3455566666666666665555555555555555555555555443
No 118
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=69.76 E-value=12 Score=33.07 Aligned_cols=45 Identities=24% Similarity=0.325 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 109 ELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 109 e~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
|..|.+|...+++ ...+.++.||..+|..|+.+...+...+..|.
T Consensus 89 Ey~R~~~~e~~ke------e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 89 EYWRQARKERKKE------EKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred hhHHhhhcchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777763 44457788888888888886666665555443
No 119
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=69.15 E-value=14 Score=35.09 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..|...+...+.+|..|..++..|++++..+..++..||..++..+
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 4567777888888888888888888888888888888888888865
No 120
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=69.11 E-value=52 Score=25.54 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=62.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 114 KRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 114 RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
-++...++.....=..|+..+..|+.++..|..|-..=..++-.+......+..||..|+..+..-. +.+..|.
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~--~~i~~L~ 79 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS--ELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH--HHHHHHH
Confidence 4566677788888889999999999999999999999999999999999999999999999888754 3444444
No 121
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=68.80 E-value=54 Score=26.86 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=21.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 116 RQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYG 163 (233)
Q Consensus 116 k~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~ 163 (233)
+..-.|..+-|+..=...-++|+..+..|+.++..+..++..|+.++.
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554443444444444444444444444444444443333
No 122
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=68.58 E-value=47 Score=24.86 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHH
Q 026806 130 KQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEA 190 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~ 190 (233)
|-+.+..|-.+-..|......+...|..|+.....++.+...|+.++..+. ..+..|..
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e--~~~~~l~~ 68 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE--KELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 446667777777777777777777777777777777777777777766653 33444443
No 123
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=68.38 E-value=21 Score=32.51 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
++..|||.++..+..+...|+.++. .|..+|-.|=.++.-|+
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~-------~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVE-------SLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 4455676666666666655555554 56678888877777663
No 124
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=68.10 E-value=24 Score=28.21 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
|...+..|+.+++.+..++..+...+.....+...|+.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555555544
No 125
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.95 E-value=23 Score=36.78 Aligned_cols=28 Identities=39% Similarity=0.494 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
.+..+|+.++..|+.++..|..++..+.
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444443
No 126
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.38 E-value=28 Score=32.51 Aligned_cols=47 Identities=30% Similarity=0.326 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
.+++.+|+.+.+.|..+...|..+...+.+.-.....+.+.+..++.
T Consensus 63 ~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~ 109 (314)
T PF04111_consen 63 LQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELI 109 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443333
No 127
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=67.36 E-value=26 Score=31.93 Aligned_cols=43 Identities=28% Similarity=0.418 Sum_probs=27.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 116 RQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 116 k~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
+.+|.|==..- .+-++.+..|..+|+.|+++|-+|-.++.-|+
T Consensus 92 R~Rn~ELE~el-r~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 92 RQRNAELEEEL-RKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444433333 22345667778888888888888888777764
No 128
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.89 E-value=27 Score=26.86 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 148 SAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 148 N~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
...|..++..|..+-..+..+|..|+.++.
T Consensus 70 ~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 70 DQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555666666666666666666666553
No 129
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=66.64 E-value=2.6 Score=40.43 Aligned_cols=47 Identities=32% Similarity=0.359 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 105 KDGEELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLK 152 (233)
Q Consensus 105 ~Dere~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~ 152 (233)
+|+.+. +.|=...||.+|-++|.||+.....|+.+...+..+|..|.
T Consensus 280 ~~p~~~-~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 280 EDPDER-RRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred CCchhh-hhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 344433 44448999999999999999999999999999999999988
No 130
>PHA02562 46 endonuclease subunit; Provisional
Probab=66.09 E-value=82 Score=30.44 Aligned_cols=45 Identities=31% Similarity=0.409 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
.....|+.++..|+.++..+..++..|..++..+..+-..+..+.
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666666666666655554443
No 131
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=65.12 E-value=53 Score=25.68 Aligned_cols=45 Identities=31% Similarity=0.499 Sum_probs=26.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 114 KRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 114 RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L 158 (233)
.|-+..-+...+-+..|...+..|..++..|+.+...|...|..+
T Consensus 63 ~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 63 ERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566666666666666666666666666665543
No 132
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=64.79 E-value=47 Score=29.34 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 140 AVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 140 ~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
++..|+..-..+..++-.+...|..|+.|...||.+.
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~ 212 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKA 212 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444333
No 133
>PRK09039 hypothetical protein; Validated
Probab=64.76 E-value=1.1e+02 Score=29.07 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
...+|..|..+...|+.++..|...+..++.+....+.++..|
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555554
No 134
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=64.40 E-value=34 Score=32.02 Aligned_cols=61 Identities=16% Similarity=0.282 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cchhhhHHHhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR-ADAISYLEALM 192 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g-~~~vs~L~~~~ 192 (233)
..|+.+...+..|+.+|..++.+...-...+..+..|+..+..++..+.. -+.+.+||+..
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888899999998888888888888888888888888888764 34566666544
No 135
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=64.19 E-value=46 Score=30.89 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLK 166 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~ 166 (233)
++..|..++..+..+...++.++..++.++..+.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~ 243 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELE 243 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333333333333
No 136
>PHA03162 hypothetical protein; Provisional
Probab=64.06 E-value=7.4 Score=32.97 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 026806 155 LLSLSAKYGKLKDENEAIVEELKLRHRAD 183 (233)
Q Consensus 155 l~~L~~~~~~L~~EN~~LR~el~~L~g~~ 183 (233)
++.|..++..|..||..||.+|..-.|++
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~ 43 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDD 43 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 45666777788899999999998866664
No 137
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=63.94 E-value=31 Score=25.27 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
.....+..++.+++.|+.+|..|..++..|.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556778888888888888888888888765
No 138
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=63.80 E-value=1e+02 Score=27.02 Aligned_cols=60 Identities=25% Similarity=0.353 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 107 GEELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLK 166 (233)
Q Consensus 107 ere~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~ 166 (233)
.++....++.+.+-+.-+.+=..-+.++..++.++..|+-++..|..++..|......|.
T Consensus 68 ~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 68 EEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777766666677777777777777777777766666665555544
No 139
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=63.80 E-value=28 Score=35.78 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 147 ESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 147 EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
.-..|..+|+.|..+++.|..||..||.+|..+..
T Consensus 303 y~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 303 YMLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 34457888888888999999999999999998854
No 140
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=63.79 E-value=1.2e+02 Score=28.37 Aligned_cols=62 Identities=21% Similarity=0.428 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 119 NRESARRSRMRK----QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 119 NRESARRSR~RK----q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.|+..+.-..|+ ..+++.+..++...+.+...++.++..+..++..|..+-..|...+..+.
T Consensus 190 ~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 190 TREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 67788888888888888999999999988888888888888877766653
No 141
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=63.73 E-value=57 Score=31.10 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----hhhhHHHhc
Q 026806 119 NRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRAD-----AISYLEALM 192 (233)
Q Consensus 119 NRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~-----~vs~L~~~~ 192 (233)
=-|+++|-..-.|.++.|++.-...=+.....-..+-..+.+++..|.+||.-|+++|.+.+--. .|.+++-.|
T Consensus 180 ~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f 258 (305)
T PF14915_consen 180 ALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQF 258 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 35677877777888888888876666666666667778889999999999999999999875311 355555444
No 142
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=63.51 E-value=25 Score=32.42 Aligned_cols=46 Identities=33% Similarity=0.400 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
-.+..+|..+-..|+.++..+. .+..+...|+.||.+||..|.--.
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 65 LKSLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3444455555555555543333 334567788999999998877644
No 143
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=63.49 E-value=48 Score=25.84 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEA 171 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~ 171 (233)
++.|+.+|...-....-|..+|..|.++...|..|+..
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655555555555555555555555555444
No 144
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=63.26 E-value=46 Score=30.45 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
+.++.+|+.+.+.|+.++.+|+.++..|+
T Consensus 221 ~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 221 AHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 145
>PHA03155 hypothetical protein; Provisional
Probab=63.00 E-value=17 Score=30.12 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhcCCCCCCCCcchhhhhhhhhhhcccc
Q 026806 155 LLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALMPHNLMNGESYRREENLALFQSRYAS 217 (233)
Q Consensus 155 l~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~~~~~~~~~~~~~~~~l~~~q~~~~~ 217 (233)
++.|..++..|..||..||.+|..-.+|+. .-.++.++|.++..|=.+..+
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~~p~d------------~~LT~~qKea~I~s~v~~Lt~ 60 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHGNPED------------ELLTPAQKDAIINSLVNKLTK 60 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCc------------cccCHHHHHHHHHHHHHHHHH
Confidence 455666777788999999999977444442 112344477777777655443
No 146
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=62.92 E-value=24 Score=33.51 Aligned_cols=40 Identities=18% Similarity=0.381 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAI 172 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~L 172 (233)
.++.|..++..|+.||..|+.+...|......++.+-..|
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL 200 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL 200 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH
Confidence 4445555555555555555555555544444444443333
No 147
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.51 E-value=67 Score=33.51 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 107 GEELKLAKRRQSNRESARRSRMRKQEEFK----KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 107 ere~KR~RRk~sNRESARRSR~RKq~~le----eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
+.++|+.|--+-|-.+-+.+-.++...+. .++.+--.|+.+...++-+=.+|...|..|+.||-.|..++..|++
T Consensus 113 eneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 113 ENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 45666666566655544444444433332 2344445566666666666667777777777777777776666654
No 148
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=62.44 E-value=36 Score=32.78 Aligned_cols=43 Identities=21% Similarity=0.057 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-chhhhHH
Q 026806 147 ESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRA-DAISYLE 189 (233)
Q Consensus 147 EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~-~~vs~L~ 189 (233)
++..|..++..+......+..|...|+.++..++.+ -.+..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (398)
T PTZ00454 30 ELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFL 73 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 333333444444444444445555666666666553 3344433
No 149
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=62.15 E-value=7.9 Score=32.09 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 155 LLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 155 l~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
++.|..++..|..||..||.+|..-.|
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 456677777888999999999998665
No 150
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=62.15 E-value=80 Score=28.36 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 107 GEELKLAKRRQSNRESARRSRMRKQE----EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKD 167 (233)
Q Consensus 107 ere~KR~RRk~sNRESARRSR~RKq~----~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~ 167 (233)
|+..+|.||-...+-++=.-+-+=.+ ++...-.++..|+..|++|..+++.|+..|.-|..
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDd 83 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDD 83 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 45677888888877776543322221 33444456667777777777777777776665544
No 151
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=61.95 E-value=1.1e+02 Score=28.46 Aligned_cols=47 Identities=26% Similarity=0.418 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
+.+.++..+++.++.+...|..++..+...+..+..+-..|..++..
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444333
No 152
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=61.89 E-value=33 Score=27.44 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 142 EELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 142 ~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..|+..-+-...+...|++.+..++.+|..|+.+|..+.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667777777888888899999999888874
No 153
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=61.06 E-value=83 Score=31.21 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 026806 151 LKDELLSLSAKY 162 (233)
Q Consensus 151 L~~el~~L~~~~ 162 (233)
+...|..+....
T Consensus 92 ~~~~I~~~~~~l 103 (420)
T COG4942 92 LRKQIADLNARL 103 (420)
T ss_pred HHhhHHHHHHHH
Confidence 333333333333
No 154
>PRK02119 hypothetical protein; Provisional
Probab=60.88 E-value=68 Score=24.02 Aligned_cols=48 Identities=15% Similarity=0.109 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+..|+.++..|+....-+-..|..|.+-...-..+-..|+.++..|.
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~ 50 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMA 50 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999988888888899999998885
No 155
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=60.49 E-value=48 Score=31.39 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 139 KAVEELKAESAVLKDELLSLSAKYGKLKDENEAI 172 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~L 172 (233)
.++.+|+.++.+++..-..|.+-+.+|+.-|..|
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 4556666666666666666666666666666666
No 156
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.19 E-value=39 Score=30.57 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhcCCCCCCCCcchhhhh
Q 026806 128 MRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALMPHNLMNGESYRREEN 207 (233)
Q Consensus 128 ~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~~~~~~~~~~~~~~~~ 207 (233)
.-|+..++-+|.++..|+.-...+..++..|+++-.++...|..--.+++-+. +-+|.-++ .
T Consensus 130 IAKkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~fS----i~Sl~v~~--------------~ 191 (210)
T KOG1691|consen 130 IAKKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWFS----ILSLVVLL--------------S 191 (210)
T ss_pred HHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH----HHHHHHHH--------------H
Confidence 44668899999999999999999999999999999999999999888888865 55566555 6
Q ss_pred hhhhhhcc
Q 026806 208 LALFQSRY 215 (233)
Q Consensus 208 l~~~q~~~ 215 (233)
|+-||..|
T Consensus 192 va~~Qvly 199 (210)
T KOG1691|consen 192 VAGWQVLY 199 (210)
T ss_pred HHHHHHHH
Confidence 77777654
No 157
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=60.13 E-value=39 Score=32.06 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
..|...+..|+.++..|..++..|......+..+-..|+.++..+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34445555555555555555555555555556666666666666654
No 158
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=60.02 E-value=67 Score=23.64 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+..++...+..|-.+..+++....+...|..+-..|+.++..++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455566777777777777777777777777777776666543
No 159
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=59.81 E-value=53 Score=27.61 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
..+..|..++.........++.++..+......+...|..|+.+...+.-|+.+.+..
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~ 148 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYD 148 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 3445566666677777777777777777777888888888888877776666664443
No 160
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=59.42 E-value=18 Score=26.83 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L 158 (233)
+.|..++..|+..|..|..++..|
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 161
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=59.33 E-value=10 Score=26.21 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=11.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 113 AKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDEL 155 (233)
Q Consensus 113 ~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el 155 (233)
.++...|++=|+..-... ..+.+|+.++..|..||-.|+..+
T Consensus 3 ~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 455666777666654443 457788888888888888887665
No 162
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=59.30 E-value=93 Score=28.27 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
|+++...+..+-..|..+++.....+..+..++..|+.+...+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 66667777777777777777777777778888888888777765
No 163
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=59.22 E-value=36 Score=25.00 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
++||+.+++.|+.|..++...+..-.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999988888888776544
No 164
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=58.95 E-value=35 Score=28.62 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
..+...+.-+..|+.+...=-.+|..|++++..+...|..|..+
T Consensus 87 sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 87 SLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445556666677777666677777777777777777777654
No 165
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=58.23 E-value=52 Score=31.25 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGK 164 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~ 164 (233)
+.++..|..+|..|+..|..++.++...++.+..
T Consensus 77 ~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eg 110 (389)
T PF06216_consen 77 SNEWISLNDQVSHLQHQNSEQRQQIREMREIIEG 110 (389)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666666666665554444433
No 166
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=58.17 E-value=71 Score=23.35 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 140 AVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 140 ~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
++.+|..+.+.|..++..|......+..+-...+.+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333
No 167
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.15 E-value=25 Score=35.25 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYG 163 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~ 163 (233)
+.+.+|+.++..|..+|..|+.++++|+++-.
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556777777777777777777777765554
No 168
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=58.10 E-value=46 Score=26.29 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 152 KDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 152 ~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
..++..|..+...+..||..|+.++.
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555544443
No 169
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=57.95 E-value=58 Score=28.40 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026806 137 LQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~ 159 (233)
.+.++..|+.+|+.|..++..|.
T Consensus 45 ~erQ~~~LR~~~~~L~~~l~~Li 67 (225)
T PF04340_consen 45 VERQLERLRERNRQLEEQLEELI 67 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555443
No 170
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=57.88 E-value=50 Score=27.32 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRAD 183 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~ 183 (233)
||..+++.|+.|+..+..-...|..++.-|+-.+...|.....+.+.+
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~ 76 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGT 76 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 555666666666666666666666666667777777777777655433
No 171
>smart00340 HALZ homeobox associated leucin zipper.
Probab=57.66 E-value=27 Score=24.44 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
.++-|..-.+.|..||.+|..+++.|+
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888899999999998888765
No 172
>PF14645 Chibby: Chibby family
Probab=57.58 E-value=52 Score=26.80 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
..-|..+..+|+.||.-|+-+++.|..=+....+|-.-+..+|
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345555667777777777777777766666666665555443
No 173
>PRK04406 hypothetical protein; Provisional
Probab=57.34 E-value=82 Score=23.80 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
++.|+.++..|+....-+-..|..|.+-...-..+-..|+.++..|.
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999885
No 174
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.30 E-value=88 Score=24.73 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEEL--KAESAVLKDELLSLSAKYGKLKDE 168 (233)
Q Consensus 132 ~~leeLe~~V~~L--~~EN~~L~~el~~L~~~~~~L~~E 168 (233)
.++..||.+++.| ..+-..|.-++..+...+..+..+
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~ 87 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSAR 87 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444444444 444444444444444433333333
No 175
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=57.19 E-value=39 Score=27.42 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYG 163 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~ 163 (233)
.+-.++.++..|...|.+|.+++..|+..+.
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555544444433
No 176
>PRK00295 hypothetical protein; Provisional
Probab=57.03 E-value=77 Score=23.39 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
|+.++..|+....-+-..|..|.+-...-..+-..|+.++..|. +.+..+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALI--KRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence 66788888888888888888888888888888888888888875 3444444
No 177
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=56.72 E-value=42 Score=26.59 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 026806 146 AESAVLKDEL 155 (233)
Q Consensus 146 ~EN~~L~~el 155 (233)
..|..|..++
T Consensus 31 ~~n~el~~el 40 (106)
T PF05837_consen 31 RRNQELAQEL 40 (106)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 178
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=56.71 E-value=52 Score=31.52 Aligned_cols=6 Identities=33% Similarity=0.146 Sum_probs=2.4
Q ss_pred hhHHHH
Q 026806 45 REKINQ 50 (233)
Q Consensus 45 r~~~~~ 50 (233)
+..|=+
T Consensus 63 ~~eYv~ 68 (342)
T PF06632_consen 63 VEEYVQ 68 (342)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344433
No 179
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=56.61 E-value=43 Score=31.83 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 142 EELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 142 ~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
...+.+...|..+|..|+.++..+..||..|...|....
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555666777777788888888888888888777754
No 180
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=56.57 E-value=46 Score=34.98 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
.++.|+.+...|+.+...++.+=.+|.+.|..|+.||-.|..++..|..
T Consensus 70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666677777777777777666666643
No 181
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=55.70 E-value=81 Score=31.32 Aligned_cols=61 Identities=28% Similarity=0.296 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 120 RESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 120 RESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
-++|.--|.|-.+--...+..++.+..|...|+.++.++.....-|..||..||.-+..+.
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlE 286 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLE 286 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455556666666556667778888888889999999999888999999999998887763
No 182
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=55.55 E-value=89 Score=28.06 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 128 MRKQEEFKKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 128 ~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
.+-+..+..|..++..|+..|..|...|..+..
T Consensus 219 ~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 219 KELRRQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 344556666777777777777777666665543
No 183
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.07 E-value=84 Score=32.42 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
+.++..++.+-..+......|..++.....++..|..+|..|+..+..
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666666666666666666666666666665544
No 184
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=54.94 E-value=1.2e+02 Score=25.10 Aligned_cols=54 Identities=28% Similarity=0.294 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 128 MRKQEEFKKLQKAVEELKAES-AVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 128 ~RKq~~leeLe~~V~~L~~EN-~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
......+..|+.....|..+. ..+..++..|.-.+..+...+..+|.+|..|-.
T Consensus 58 ~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 58 EELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGE 112 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 344444555665556665554 556677777777888888888888888888753
No 185
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=54.57 E-value=57 Score=28.46 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 140 AVEELKAESAVLKDELLSLSAKYGK 164 (233)
Q Consensus 140 ~V~~L~~EN~~L~~el~~L~~~~~~ 164 (233)
++++....|..|...|..|+..+..
T Consensus 89 QLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 89 QLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433333
No 186
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=54.30 E-value=1.5e+02 Score=27.66 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
..|+.+...|..+-...-.....+..+...+..|...|..++.
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444444444444433
No 187
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=54.29 E-value=98 Score=24.02 Aligned_cols=31 Identities=35% Similarity=0.479 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 150 VLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 150 ~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+...+..|...+..+..+|..|..+|..++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888889999999999999999998764
No 188
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=54.23 E-value=98 Score=25.80 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 142 EELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 142 ~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
..|+..+..|-.++..+...+..|...|..|..+
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~e 50 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEE 50 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 189
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=54.21 E-value=91 Score=32.16 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 129 RKQEEFKKLQKAVEELKAESAV---LKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~---L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.+..++.+|+.++..+..+... |...+..=.....++.+.|..||.+|.++
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~El 172 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAEL 172 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHH
Confidence 5667777877777666554321 22222222233344445555555555554
No 190
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=54.11 E-value=1.2e+02 Score=30.79 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=28.2
Q ss_pred HHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 115 RRQSNRESARRSRMRKQ----EEFKKLQKAVEELKAESAVLKDELLSLSAKYGK 164 (233)
Q Consensus 115 Rk~sNRESARRSR~RKq----~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~ 164 (233)
-.++|=++++.+-.||. ..++.++.++..++.+|..|.........++.+
T Consensus 368 ~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~ 421 (493)
T KOG0804|consen 368 QESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKE 421 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34556666666655553 344556666666666666666555554444333
No 191
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=53.95 E-value=49 Score=35.03 Aligned_cols=49 Identities=27% Similarity=0.372 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 131 QEEFKKLQKAVEELKAESAVLKD---------------------ELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~---------------------el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
..++.++..++..+..||..|.. ++..|..++..++.||..||-++..+
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888887766 45567778888888888888777655
No 192
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=53.87 E-value=95 Score=24.37 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
++..+...+.+|-.-...|..+...|..++..|...|...|.++....
T Consensus 27 E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 27 EYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444445555555555566677888877776643
No 193
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=53.55 E-value=72 Score=27.72 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYG 163 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~ 163 (233)
...+.+|+.+...|+.+...|..++..+.....
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555444443
No 194
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=53.50 E-value=74 Score=23.99 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYG 163 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~ 163 (233)
+|......-..+|..|...+..|.++..
T Consensus 32 ~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 32 DLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444433333333333
No 195
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=53.45 E-value=1.7e+02 Score=26.27 Aligned_cols=66 Identities=27% Similarity=0.319 Sum_probs=41.3
Q ss_pred HHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 115 RRQSNRESARRSRMRKQEEF----KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 115 Rk~sNRESARRSR~RKq~~l----eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
...+||+-+-..=.+|-..+ ..-...+..++.++..++..+..|...+..+...|..|...|..+.
T Consensus 181 ~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 181 IAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 44566655544433332222 2233445667777777777777777777788888888887777763
No 196
>PRK14127 cell division protein GpsB; Provisional
Probab=53.40 E-value=50 Score=26.88 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKD 167 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~ 167 (233)
+.|+++...++.|..+|..|..++..|..++..+..
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666665555555444444433
No 197
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=53.23 E-value=2.4e+02 Score=28.97 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=5.1
Q ss_pred hhhhhhch
Q 026806 38 RDIFATKR 45 (233)
Q Consensus 38 ~~~~~~~r 45 (233)
+.+|+++.
T Consensus 78 ~ayyLPk~ 85 (546)
T PF07888_consen 78 QAYYLPKD 85 (546)
T ss_pred CcccCCCC
Confidence 45677765
No 198
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=52.51 E-value=90 Score=22.85 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
|+.++..|+....-+-..|..|.+-...-..+-..|+.++..|. +.+..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR--ERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 67778888888888888888888777777777788888877775 4444443
No 199
>PRK04325 hypothetical protein; Provisional
Probab=52.09 E-value=93 Score=23.32 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
++..++.++..|+....-+-..|..|.+-...-..+-..|+.++..|.
T Consensus 3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 3 AVQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999998888888888899998888875
No 200
>PRK00846 hypothetical protein; Provisional
Probab=52.07 E-value=1.1e+02 Score=23.58 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
++|+.++..|+....-.-..|..|.+.......+...|+.++..|. +.+..+.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~--~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 5688899999999988888888888888888888888888888875 3444444
No 201
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=51.44 E-value=1.3e+02 Score=33.31 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 123 ARRSRMRKQEEFKKLQKAV-EELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 123 ARRSR~RKq~~leeLe~~V-~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.+.+..+....+.+++.++ ..+..+-.++..++..|..+...++..+.+|+.++..+
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444 44444444455555555555555555555665555544
No 202
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=51.11 E-value=1.7e+02 Score=26.86 Aligned_cols=52 Identities=27% Similarity=0.356 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
....++..|..++..++..-..|..++..|......+..+-..|+.++..+.
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777666666666666666665553
No 203
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=51.02 E-value=1.3e+02 Score=24.31 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 144 LKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 144 L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
...+-..|..++..+..++..|..+|..|-.+|..+
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444566666666777777777777776666543
No 204
>PRK02793 phi X174 lysis protein; Provisional
Probab=50.55 E-value=1e+02 Score=22.95 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
+++.++..|+....-+-..|..|.+-...-..+-..|+.++..|. +.+..+.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~--~rl~~~~ 56 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT--EKLKASQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc
Confidence 588899999999999999999998888888888889998888885 3444443
No 205
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=50.40 E-value=82 Score=21.73 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 026806 156 LSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 156 ~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
..|...+..|..+|..|+.++..
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 206
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.24 E-value=1e+02 Score=31.15 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+.|+.++.+|..+|..|+..+..|...+.+|..+-.++-.+|..++
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34555677778888888888888888888887777766666665553
No 207
>PRK15396 murein lipoprotein; Provisional
Probab=50.20 E-value=1.2e+02 Score=23.43 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
.++.|..+|..|..+..+|...+..++........|=.+--.+|
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777666655555544333333
No 208
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=50.19 E-value=57 Score=29.75 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 148 SAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 148 N~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
++.|..........++.|..||..|+.+|..|.++..-+.++
T Consensus 107 i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~~s~a~~~ 148 (232)
T KOG2483|consen 107 IQSLERKSATQQQDIEDLSRENRKLKARLEQLSLPQSPASSE 148 (232)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhh
Confidence 445566666666777778889999999999888766433333
No 209
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=49.91 E-value=70 Score=27.91 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhc
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALM 192 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~ 192 (233)
|..++..++.|...|++-|..- +..=..||.+|. .+.+..|++++
T Consensus 34 Lr~EL~KvEeEI~TLrqvL~aK-------er~~~eLKrkLG----it~l~elkqnl 78 (162)
T PF04201_consen 34 LRSELAKVEEEIQTLRQVLAAK-------ERHCAELKRKLG----ITPLSELKQNL 78 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHC----CchHHHHHHHH
Confidence 4444444454444444444332 233334444433 34566666655
No 210
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=49.84 E-value=78 Score=25.64 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 119 NRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 119 NRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~ 156 (233)
++.|+-.-+..=...+.+++.++..|..+|.-|..+|.
T Consensus 92 ~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 92 SEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334333444444444444444444444444444443
No 211
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=49.73 E-value=53 Score=31.51 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
.++-.|.++-+.|+.||..|..++.. +..+..||..|+..+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~----~e~l~~En~~Lr~ll 97 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKS----YEEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 34455666666666666666555543 455668888777544
No 212
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=49.66 E-value=84 Score=26.38 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+.-...-+..|+.||.-|+..+-.+++.|..=...-..|+.+|...
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~ 125 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIM 125 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455667889999999999999999999988888888888887653
No 213
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=49.19 E-value=1.2e+02 Score=23.54 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+.+++|...|..|-+...+|...+..+.........|+.+-.+++...
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~ 72 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 567778888888888888888888888888888888888887777654
No 214
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=49.17 E-value=73 Score=32.70 Aligned_cols=61 Identities=38% Similarity=0.550 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c-CcchhhhHHHhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR-------H-RADAISYLEALM 192 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L-------~-g~~~vs~L~~~~ 192 (233)
..+++|..++..+..+...|..++..+.+.......++..|..++... . ++.-|..|+..+
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 456666666666666666666666666666666666666665554432 2 123466666554
No 215
>PRK14160 heat shock protein GrpE; Provisional
Probab=49.15 E-value=88 Score=28.15 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
.+..|+.++..|+.++..|..++..+..++..+.++..-+|.+
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR 97 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKR 97 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666655544443
No 216
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=49.10 E-value=2e+02 Score=30.21 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=3.7
Q ss_pred hHHHHHHH
Q 026806 107 GEELKLAK 114 (233)
Q Consensus 107 ere~KR~R 114 (233)
|.|.||.|
T Consensus 424 E~dvkkLr 431 (697)
T PF09726_consen 424 EADVKKLR 431 (697)
T ss_pred HHHHHHHH
Confidence 34444544
No 217
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=49.08 E-value=63 Score=30.61 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVE 174 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~ 174 (233)
.++.+|+.++..|+..+..|..++..+......+..++..|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 8 ERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455677888999999999999999999999999999988875
No 218
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=48.99 E-value=92 Score=32.01 Aligned_cols=50 Identities=28% Similarity=0.423 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHhhcC
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSL----------------------------SAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L----------------------------~~~~~~L~~EN~~LR~el~~L~g 181 (233)
..+..|+.++..|+.++..|..+|..+ ...+..|..||..|+..+..+.+
T Consensus 510 ~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~ 587 (722)
T PF05557_consen 510 KEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEE 587 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 355566666666666666666666541 46677888999999999977753
No 219
>PRK14154 heat shock protein GrpE; Provisional
Probab=48.81 E-value=74 Score=28.58 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYG 163 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~ 163 (233)
.+++|..+.-.|.++...++++...-.+...
T Consensus 67 e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~ 97 (208)
T PRK14154 67 KVDEYKTQYLRAQAEMDNLRKRIEREKADII 97 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555544444333333
No 220
>PHA02562 46 endonuclease subunit; Provisional
Probab=48.75 E-value=1.9e+02 Score=28.01 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 128 MRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDEN 169 (233)
Q Consensus 128 ~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN 169 (233)
.+-+..++.|+.++..+..+-..|..++..+......+..+.
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443
No 221
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.69 E-value=73 Score=34.43 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 118 SNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 118 sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.+--.-+--+.+-...++.|...+..|+.+|..|..+++.....+..+..++.-||.+++..
T Consensus 657 ~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 657 DIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444566667788888889999999999999999999999999999999999999854
No 222
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=48.48 E-value=96 Score=31.86 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 128 MRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 128 ~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+.++.+++|+.++..|..+...+..++..+...+..+..|..+.+.+...+.
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le 376 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELE 376 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888999999999999999999999999999999999999988888875
No 223
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=48.35 E-value=36 Score=33.01 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhcCCCCCCCCcchhhhhhhhhh-hccccccccc
Q 026806 144 LKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALMPHNLMNGESYRREENLALFQ-SRYASSSSLN 222 (233)
Q Consensus 144 L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~~~~~~~~~~~~~~~~l~~~q-~~~~~~~~~~ 222 (233)
..-=|++|-++|+..- -..+..|-..||....+ +...|....+.+++...+ +|..++||| +--+.--..|
T Consensus 301 Y~hFN~tfW~kI~~~G--~~~~~~Ev~~lr~~~~~------l~~~C~~~~~~~~~~~~i-~~~~~~p~qp~g~~~i~gy~ 371 (402)
T PF06990_consen 301 YDHFNRTFWRKIEAYG--PDRFEREVAELRERNQE------LQERCIQGGRALVNASQI-KDKRLRPWQPSGKAKILGYN 371 (402)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH------HHHHhhCCCCCCCCcccc-cCccCCCCccCCCcceEEEe
Confidence 3444666666664432 12355566666665555 445565554555788888 899999999 5446666667
Q ss_pred cccccc
Q 026806 223 VKASSS 228 (233)
Q Consensus 223 ~~~~~~ 228 (233)
+|...+
T Consensus 372 l~~~~~ 377 (402)
T PF06990_consen 372 LKPGLD 377 (402)
T ss_pred cCcccc
Confidence 776543
No 224
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=47.85 E-value=43 Score=27.53 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 109 ELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLK 152 (233)
Q Consensus 109 e~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~ 152 (233)
|..|..|+.++||.+.. +++++|+.++..|+.+...+.
T Consensus 95 E~~Rs~~ke~~Ke~~~~------~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 95 EYWRSARKEAKKEEELQ------ERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666655433 456677777777766665543
No 225
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=47.80 E-value=6.1 Score=36.23 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAI 172 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~L 172 (233)
+..++|...+++.|+.-...|..++++|++....|.+||.+|
T Consensus 121 KT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 121 KTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777666666666777666
No 226
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.69 E-value=1.2e+02 Score=27.59 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 128 MRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 128 ~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
.-=+.+++.|+.+|..|+-++..+..+|..+.++-..+..+-..+..++
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3458899999999999999999999999999999888887776655443
No 227
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=47.48 E-value=81 Score=26.17 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDE 168 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~E 168 (233)
.|-.-+++|+.+++.|+.+..+|.+.-..+.+++..|.++
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777776666666666666655555443
No 228
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=47.33 E-value=69 Score=30.87 Aligned_cols=41 Identities=27% Similarity=0.320 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
.+|+.++..|+.++..|..++..+.++...+..|...|+.-
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 25 KELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34556666677777777777777777777777777777653
No 229
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=47.32 E-value=1.3e+02 Score=30.07 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=27.7
Q ss_pred HHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 116 RQSNRESARRSRMRK-----QEEFKKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 116 k~sNRESARRSR~RK-----q~~leeLe~~V~~L~~EN~~L~~el~~L 158 (233)
+..-|.+|++-.+|- ++++.++|.++..|+.||..|..+.-..
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555544443 4677778888888888888877766553
No 230
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=47.26 E-value=79 Score=32.47 Aligned_cols=49 Identities=29% Similarity=0.381 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
++.+..+..++.++..+|..|..+|..++++...+..|+..|..-|.+.
T Consensus 218 ~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~ 266 (596)
T KOG4360|consen 218 QEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAY 266 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666666666666666655544443
No 231
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=47.24 E-value=78 Score=28.68 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
..|+.-+..++.+.......+.++.+.|..|..+-.++|.+
T Consensus 63 n~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 63 NTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666
No 232
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=46.90 E-value=1.2e+02 Score=23.76 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CcchhhhHHHhc
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH----RADAISYLEALM 192 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~----g~~~vs~L~~~~ 192 (233)
+..+.+.|..||++|..+.... ..+.+|...|.+-.+-. ..+.+..|.+..
T Consensus 28 a~~~~~kL~~en~qlk~Ek~~~-----~~qvkn~~vrqknee~~~~~sr~~V~d~L~q~g 82 (87)
T PF10883_consen 28 AKKQNAKLQKENEQLKTEKAVA-----ETQVKNAKVRQKNEENTRRLSRDSVIDQLQQHG 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHhhccCCHHHHHHHHHHcC
Confidence 3344666666666666665543 34567888877776632 223355665543
No 233
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=46.70 E-value=1.8e+02 Score=24.61 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 155 LLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 155 l~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+..|...+..+..|+..|-..+....
T Consensus 68 l~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 68 LNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444443333
No 234
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=46.65 E-value=29 Score=34.86 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
++|..+|+.|.++|..|+.++..+.-.|..+..||.-|+.--..+
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~I 90 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEI 90 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHH
Confidence 468888999999999999999999999999999998877554444
No 235
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.60 E-value=1e+02 Score=28.51 Aligned_cols=14 Identities=7% Similarity=-0.040 Sum_probs=6.9
Q ss_pred CCCCcchhhhhhhhhh
Q 026806 197 MNGESYRREENLALFQ 212 (233)
Q Consensus 197 ~~~~~~~~~~~l~~~q 212 (233)
+-|||+ .+.+.+-+
T Consensus 110 V~G~Gl--~ITi~d~~ 123 (247)
T COG3879 110 VTGPGL--VITIDDPG 123 (247)
T ss_pred CcCCcE--EEEecCCC
Confidence 445555 44554443
No 236
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=46.42 E-value=36 Score=27.76 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
-|..+..+|+.||.-|+-++..|..-+
T Consensus 76 rlkkk~~~LeEENNlLklKievLLDML 102 (108)
T cd07429 76 RLKKKNQQLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666554433
No 237
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=46.26 E-value=50 Score=27.15 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 124 RRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 124 RRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
.||+.+....-+++..+++.|+.+...|..++..+.
T Consensus 97 ~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 97 WRSARKEAKKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555556666788888889888888888877654
No 238
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=46.09 E-value=1.6e+02 Score=29.58 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 130 KQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
|+...+-+...+..+......+..++..+..++..|...=..|+.++..
T Consensus 444 k~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 444 KLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666666666666666666666654
No 239
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=45.89 E-value=1.8e+02 Score=28.64 Aligned_cols=62 Identities=24% Similarity=0.407 Sum_probs=38.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhh
Q 026806 114 KRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELL--------------SLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 114 RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~--------------~L~~~~~~L~~EN~~LR~el~~L 179 (233)
|...-|-|.-|.-| +-+++-+.+.++|+..|++|..++. .|......+..||..|..+|.++
T Consensus 78 rk~~e~~eglr~i~----es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l 153 (401)
T PF06785_consen 78 RKITEKDEGLRKIR----ESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDAL 153 (401)
T ss_pred HHHHhccHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444555554444 3444555555666666666665554 44556677888999998888776
No 240
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=45.85 E-value=1.1e+02 Score=22.10 Aligned_cols=39 Identities=26% Similarity=0.166 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 139 KAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
.-...|+.-|..|..+... ..+...|+.+|.+||.-|..
T Consensus 20 ~L~~~l~rY~~vL~~R~~l-~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 20 ALENFLKRYNKVLLDRAAL-IQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 3344677778888777664 45668999999999987754
No 241
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=45.69 E-value=2.1e+02 Score=25.02 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKD 153 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~ 153 (233)
.++..|..+++.++.+...++.
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 242
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=45.68 E-value=1.6e+02 Score=31.06 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.+..+...+...+.||..|...+..|...+..++.+-..||.+|.++
T Consensus 42 elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~ 88 (717)
T PF09730_consen 42 ELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEY 88 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555556666666666666667777777777777777665
No 243
>PRK14162 heat shock protein GrpE; Provisional
Probab=45.65 E-value=96 Score=27.49 Aligned_cols=9 Identities=33% Similarity=0.468 Sum_probs=4.2
Q ss_pred hhhhHHHhc
Q 026806 184 AISYLEALM 192 (233)
Q Consensus 184 ~vs~L~~~~ 192 (233)
.+++|...+
T Consensus 98 V~DnLerAl 106 (194)
T PRK14162 98 AMDNLERAL 106 (194)
T ss_pred HHhHHHHHH
Confidence 344554444
No 244
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.62 E-value=3e+02 Score=26.94 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHhhHHHHHHH
Q 026806 107 GEELKLAKRRQSNRESARRS 126 (233)
Q Consensus 107 ere~KR~RRk~sNRESARRS 126 (233)
.+..|+.++.+-+|..|-.+
T Consensus 216 ~eklR~r~eeeme~~~aeq~ 235 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQE 235 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555544433
No 245
>PF15058 Speriolin_N: Speriolin N terminus
Probab=45.41 E-value=29 Score=31.19 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhH
Q 026806 155 LLSLSAKYGKLKDENEAIVEELKLRHRADAISYL 188 (233)
Q Consensus 155 l~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L 188 (233)
.+-|++++.+|+.||.+||.++..|+--..+..+
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLirEN~eLksa 40 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIRENHELKSA 40 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4556777888889999999888888754444444
No 246
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=45.20 E-value=1.1e+02 Score=24.29 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 143 ELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 143 ~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.|...+..|..++..+...+..+...+..+..++..+
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555444443
No 247
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=45.13 E-value=1.8e+02 Score=24.65 Aligned_cols=36 Identities=28% Similarity=0.282 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 144 LKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 144 L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+..++..+..+++.|.+++...+.|...|+.+...+
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666777777777776654
No 248
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.64 E-value=1.3e+02 Score=29.50 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
.|...-+.|..--++|...++.|.++...|...=..|+.+..+
T Consensus 236 slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 236 SLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333334444444555666666666666666666666665555
No 249
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=44.02 E-value=1.8e+02 Score=23.97 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=49.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 115 RRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVE 174 (233)
Q Consensus 115 Rk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~ 174 (233)
|.+..|-.+---|.==++++..|+.++..++.-+..|.++|..|...+....+.+..|+.
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 555667777767777778999999999999999999999999998888888888777654
No 250
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=43.99 E-value=92 Score=27.15 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.+++|=..+.+.|...|.-|+.++..+......|..++..|..+...+
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666776666666666655555555555555555543
No 251
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=43.93 E-value=1.5e+02 Score=26.23 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..|-.-...+..||..|..++..|.+.+..|...+..|..+-..|.
T Consensus 152 ~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~ 197 (206)
T PF14988_consen 152 KSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445567778888888888888888888888877776666553
No 252
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=43.60 E-value=58 Score=34.08 Aligned_cols=44 Identities=34% Similarity=0.402 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+|-.+|.+|.-|+.-|+.++...++--.+|+..+..|..+|..+
T Consensus 326 DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~ 369 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKA 369 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777776666655555555555555555544
No 253
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=43.56 E-value=50 Score=25.49 Aligned_cols=19 Identities=42% Similarity=0.608 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026806 142 EELKAESAVLKDELLSLSA 160 (233)
Q Consensus 142 ~~L~~EN~~L~~el~~L~~ 160 (233)
..|..||.+|..+|+.|..
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ 21 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEA 21 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665443
No 254
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=43.02 E-value=1.6e+02 Score=24.65 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
...+.+|+.+|..|..|--.=..++..+-.+.+.|..++..|...+..
T Consensus 13 e~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~ 60 (120)
T PF10482_consen 13 EKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKV 60 (120)
T ss_pred HHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 345555666666655554444444444444444444444444444433
No 255
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.98 E-value=1.3e+02 Score=28.13 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhc
Q 026806 127 RMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGK----LKDENEAIVEELKLRH 180 (233)
Q Consensus 127 R~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~----L~~EN~~LR~el~~L~ 180 (233)
-......++++..++..++.++.++..++..|..++.. +...+..|+.++..++
T Consensus 54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 54 IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555444433 3345666666666654
No 256
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.92 E-value=1e+02 Score=31.11 Aligned_cols=48 Identities=8% Similarity=0.200 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+.++.|+.+++.+......+..+|..|......|..+-..++.+....
T Consensus 83 KqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~~ 130 (475)
T PRK13729 83 KQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTA 130 (475)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Confidence 334444444444445555555555555555555555545555554443
No 257
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=42.89 E-value=1.3e+02 Score=31.25 Aligned_cols=40 Identities=28% Similarity=0.362 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAI 172 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~L 172 (233)
+-.+|+.+|+.|+.++..|..+|..+..+....+.+-..-
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~ 119 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQM 119 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666555554444443333
No 258
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=42.76 E-value=2.1e+02 Score=27.35 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 026806 147 ESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRAD 183 (233)
Q Consensus 147 EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~ 183 (233)
++..|..-+...+++...|..|...|++++.++.|.-
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~ 102 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDI 102 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 3455566777888899999999999999999999763
No 259
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=42.73 E-value=70 Score=28.89 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhcCCCCCC
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALMPHNLMN 198 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~~~~~~~ 198 (233)
||..++..++.|..+|+.=|..-.+++ .+||.+| |...+.-|.+++..+.+|
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~-------~ELKRKL----Glt~~~EL~qnisksw~d 99 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHA-------AELKRKL----GLTVLKELKQNISKSWKD 99 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh----CcchHHHHHHHHHHHHhh
Confidence 666666667666666665555443333 3444444 345566677666544333
No 260
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.73 E-value=1.9e+02 Score=24.51 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLK 166 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~ 166 (233)
+.+..+++.|+.+-.....++..|+.+...+.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 261
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=42.50 E-value=72 Score=32.12 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
.+|..++..|...|..|.. .+.....+-..|+++|..|..
T Consensus 4 ~~~~~~~~~~~~~~~~l~~-------~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAE-------LLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcC
Confidence 3455555555555555554 445555666667777777754
No 262
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.47 E-value=1.5e+02 Score=27.19 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhc
Q 026806 123 ARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALM 192 (233)
Q Consensus 123 ARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~ 192 (233)
.=+.|.-+|..++.+..-+..++.+...|..++..+..+.... |..||.++.... -..+.+|...+
T Consensus 154 vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~-~~k~~D~k~~~ 219 (243)
T cd07666 154 VIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWK-QNMQTDLRSAF 219 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4445567788888888777778887788888888888777776 777998888764 23455555555
No 263
>PRK12705 hypothetical protein; Provisional
Probab=42.41 E-value=3.1e+02 Score=27.83 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRAD 183 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~ 183 (233)
.|+.+.+.|......|..+-..|..+...+......+..+|..+.|.+
T Consensus 92 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt 139 (508)
T PRK12705 92 QLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLT 139 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 355555555555555555555555555555554555555666665544
No 264
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=42.17 E-value=1.9e+02 Score=23.69 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
+.--++|..+-..|+.-+..|..+...+.+++..|.++-..++..+.
T Consensus 29 K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 29 KTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444333
No 265
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=42.13 E-value=74 Score=24.44 Aligned_cols=34 Identities=32% Similarity=0.503 Sum_probs=24.7
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 123 ARRSRMRK----QEEFKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 123 ARRSR~RK----q~~leeLe~~V~~L~~EN~~L~~el~ 156 (233)
-++-|.|| ...++.|..++..|..+|..|..++.
T Consensus 62 L~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 62 LKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555 45778888889999999988887764
No 266
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=42.00 E-value=1.5e+02 Score=26.08 Aligned_cols=32 Identities=38% Similarity=0.632 Sum_probs=20.3
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 026806 122 SARRSRMRK-QEEFKKLQKAVEELKAESAVLKD 153 (233)
Q Consensus 122 SARRSR~RK-q~~leeLe~~V~~L~~EN~~L~~ 153 (233)
|||.-+.+. +..+.+|..++..|..||..|+.
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544 45667777777777777776654
No 267
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=41.66 E-value=52 Score=24.93 Aligned_cols=27 Identities=33% Similarity=0.600 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
++..|+.+...|+.||..|.-++..|.
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366677777777777777776666554
No 268
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=41.51 E-value=49 Score=23.77 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
.....++..|+.||..|+.+|..++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667888899999999999887653
No 269
>PRK14160 heat shock protein GrpE; Provisional
Probab=41.50 E-value=1.5e+02 Score=26.73 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
.+..|+.++..|+.+...|..++.++...+.-+...-..=+.+
T Consensus 62 e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 104 (211)
T PRK14160 62 ENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEG 104 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555554444433333333
No 270
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=41.33 E-value=2.7e+02 Score=25.04 Aligned_cols=79 Identities=10% Similarity=0.114 Sum_probs=60.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHh
Q 026806 112 LAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEAL 191 (233)
Q Consensus 112 R~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~ 191 (233)
|.-+.+.-.+-..|.-..-++++..|...+..-+..-.....+-..++.+...|..|...++.+|..|+ .-|-.|+..
T Consensus 106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ--~qv~~Lq~q 183 (192)
T PF11180_consen 106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQ--RQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 334566666677777777778888888888888888888888888888888888888888888888886 556666655
Q ss_pred c
Q 026806 192 M 192 (233)
Q Consensus 192 ~ 192 (233)
.
T Consensus 184 ~ 184 (192)
T PF11180_consen 184 A 184 (192)
T ss_pred h
Confidence 5
No 271
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=41.03 E-value=2.3e+02 Score=26.69 Aligned_cols=49 Identities=31% Similarity=0.316 Sum_probs=34.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 116 RQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGK 164 (233)
Q Consensus 116 k~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~ 164 (233)
.+.-|+-|.+-+..=|..++||..+-.+-.....-|+.++.-|.++|.+
T Consensus 42 LQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~e 90 (277)
T PF15030_consen 42 LQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRE 90 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHH
Confidence 4555666666666677777777777777777777788888777776654
No 272
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=40.80 E-value=1.1e+02 Score=32.40 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHh
Q 026806 127 RMRKQEEFKKLQKAVEELKAESAVLKDELLSLSA----------------------------KYGKLKDENEAIVEELKL 178 (233)
Q Consensus 127 R~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~----------------------------~~~~L~~EN~~LR~el~~ 178 (233)
+-+--+.+..|..+++.++.||..|+-++..+.. ++..|++|=++||.-+..
T Consensus 129 ~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 129 KSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344456778889999999999999888877743 345666777777766654
Q ss_pred -hcCcchhhhHH
Q 026806 179 -RHRADAISYLE 189 (233)
Q Consensus 179 -L~g~~~vs~L~ 189 (233)
|.||-+++...
T Consensus 209 ~lpgpaa~a~mk 220 (769)
T PF05911_consen 209 KLPGPAALAQMK 220 (769)
T ss_pred cCCChHHHHHhH
Confidence 67777776555
No 273
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=40.79 E-value=2.4e+02 Score=30.87 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHH----------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 120 RESARRSRMRKQE--EFKKLQKAVEE----------------L-KAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 120 RESARRSR~RKq~--~leeLe~~V~~----------------L-~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
|+.|+.+++.++- ++..|+.++.. + +.|+..|...+..+.+++..+.+.-..|-.++..+.
T Consensus 729 ~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE 808 (984)
T COG4717 729 REAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLE 808 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888877753 44444444431 1 256666777777777777888888888888888888
Q ss_pred CcchhhhHHHhc
Q 026806 181 RADAISYLEALM 192 (233)
Q Consensus 181 g~~~vs~L~~~~ 192 (233)
|.+.++.|.+-.
T Consensus 809 ~g~~~a~lr~~~ 820 (984)
T COG4717 809 GGGTVAELRQRR 820 (984)
T ss_pred cCChHHHHHHHH
Confidence 888888887554
No 274
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=40.73 E-value=2.2e+02 Score=24.96 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
.+.+..|+.++..++.....|...+..|..++..+...-..|.++..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~ 144 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ 144 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777666655553
No 275
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=40.57 E-value=1.7e+02 Score=22.64 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+|..++..-+.|...|..-+..|+.++.....-|..|..++..+.
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~ 53 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQ 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666666666666666666666666666554
No 276
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=40.51 E-value=95 Score=25.57 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENE 170 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~ 170 (233)
-=|.-+++|..+|...+.||-+|+.+.+.|-+=+..|.+--+
T Consensus 67 ELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSS 108 (120)
T KOG3650|consen 67 ELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASS 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhh
Confidence 345678888888888888888888888887776666655443
No 277
>PRK14140 heat shock protein GrpE; Provisional
Probab=40.40 E-value=1.3e+02 Score=26.61 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
.+++|+.++..|+.+...|...+.++...
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae 66 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQAD 66 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 278
>PRK14143 heat shock protein GrpE; Provisional
Probab=40.34 E-value=1.5e+02 Score=27.09 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLS 157 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~ 157 (233)
++++|..++-.+.++...++++..+
T Consensus 82 e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 82 ELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 279
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=40.18 E-value=1.1e+02 Score=22.84 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.|..+++.|+..|..|...++.-..++..|......-.+.+..+
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~al 45 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATAL 45 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 35666777777777777777766666666665555555444444
No 280
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=40.10 E-value=1.6e+02 Score=22.02 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDEN 169 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN 169 (233)
++++...+..++.+-..+..++..+.+..+.+..+-
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv 63 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDV 63 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554444444443
No 281
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=40.09 E-value=1.3e+02 Score=27.29 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
..+.++..+.+.|..|-.....+|+.+.+.+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DI 62 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDI 62 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444444444433333
No 282
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.91 E-value=1.5e+02 Score=22.18 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 140 AVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 140 ~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
+++.|..|=..|....-.+......|...|..+...+..
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~ 51 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKE 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 283
>PRK10963 hypothetical protein; Provisional
Probab=39.85 E-value=1.7e+02 Score=25.84 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=8.2
Q ss_pred hhhhhhhhchhHHH
Q 026806 36 INRDIFATKREKIN 49 (233)
Q Consensus 36 ~~~~~~~~~r~~~~ 49 (233)
.|++||..++.=..
T Consensus 14 ~~PdFf~~h~~Ll~ 27 (223)
T PRK10963 14 QNPDFFIRNARLVE 27 (223)
T ss_pred HCchHHhhCHHHHH
Confidence 37777766655444
No 284
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=39.77 E-value=2.4e+02 Score=28.99 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
.|+.++..|..+|..|..+|..+.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344444444444444444444444
No 285
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.20 E-value=1.5e+02 Score=32.83 Aligned_cols=60 Identities=25% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSL---------------SAKYGKLKDENEAIVEELKLRHRADAISYLEAL 191 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L---------------~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~ 191 (233)
++++-|+.+|+.|+..+..|.-.+..| .-++..|+..|.+||.-|..|+...+-..+.++
T Consensus 325 ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~q 399 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQ 399 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
No 286
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=38.76 E-value=1.5e+02 Score=29.14 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
+-.|+|++.+++.-..++..+..++.++..-|..|...-..||..|..
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999888888877654
No 287
>PRK11239 hypothetical protein; Provisional
Probab=38.72 E-value=58 Score=29.64 Aligned_cols=28 Identities=46% Similarity=0.367 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
.+.|+.+|..|+.+...|+..+..|..+
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557778888887777777777766543
No 288
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=38.69 E-value=1.7e+02 Score=30.05 Aligned_cols=44 Identities=25% Similarity=0.162 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
.-...||.+|+.+=.+.+.|+...+.+..+...++.|-.+++.+
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777777777777777777777777666
No 289
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.56 E-value=1.6e+02 Score=30.56 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhc
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSL---SAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L---~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+.++++-+.+.+.|+.+|..|+..|..- .+.+..+..|+..|...|..+.
T Consensus 300 ~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~ 352 (581)
T KOG0995|consen 300 KSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQ 352 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666655432 2455566666666666666654
No 290
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=38.12 E-value=2.1e+02 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026806 151 LKDELLSLSAKYGKLKDENEAI 172 (233)
Q Consensus 151 L~~el~~L~~~~~~L~~EN~~L 172 (233)
|...|..|.+....+..++..+
T Consensus 113 l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 113 LQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444333
No 291
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=38.05 E-value=1.8e+02 Score=27.63 Aligned_cols=55 Identities=29% Similarity=0.340 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 124 RRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 124 RRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
..-|.+..+.+.+|+.+...|..+|...+..+..|...+..+..-=.-|...+..
T Consensus 100 L~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 100 LEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 3457778888999999999999999999999999888888777666666555533
No 292
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=37.94 E-value=2.8e+02 Score=24.33 Aligned_cols=54 Identities=28% Similarity=0.351 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 126 SRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 126 SR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
...+.-.++.+|+.++-.|+.+...+............++.++...|.+++...
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788888888888888888888888888888899999999998888765
No 293
>PRK00106 hypothetical protein; Provisional
Probab=37.93 E-value=4.1e+02 Score=27.13 Aligned_cols=7 Identities=29% Similarity=0.154 Sum_probs=2.6
Q ss_pred HHHhhcC
Q 026806 175 ELKLRHR 181 (233)
Q Consensus 175 el~~L~g 181 (233)
+|..+.|
T Consensus 158 ~Le~~a~ 164 (535)
T PRK00106 158 ELERVAA 164 (535)
T ss_pred HHHHHhC
Confidence 3333333
No 294
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=37.82 E-value=1.5e+02 Score=26.68 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 146 AESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 146 ~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
.||..|..+|..+.+.+..|..||..|+.-...
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~ 157 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAEH 157 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777777665443
No 295
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=37.77 E-value=1.2e+02 Score=22.55 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLK 166 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~ 166 (233)
+..|+.+.+.++.+...|..++..+..++..+.
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544444444433
No 296
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=37.31 E-value=1.4e+02 Score=24.78 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
..++.|+.++...+.....-...|..|...+..+..++..+...+..
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~ 87 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHP 87 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 45678888888888888888888889998888888888888777444
No 297
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=37.30 E-value=3e+02 Score=24.55 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 141 VEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 141 V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+.-|+.|-..|...+..=......++.|+..+-..+.+-
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE 174 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEE 174 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888889999999888889999999998887777663
No 298
>PRK00736 hypothetical protein; Provisional
Probab=37.28 E-value=1.7e+02 Score=21.58 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
++.++..|+....-+-..|..|..-...-..+-..|+.++..|.
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777777764
No 299
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.25 E-value=2.3e+02 Score=23.24 Aligned_cols=66 Identities=26% Similarity=0.309 Sum_probs=39.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 112 LAKRRQSNRESARRSRMRKQEEFKKLQ-------KAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 112 R~RRk~sNRESARRSR~RKq~~leeLe-------~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
++.+++..-+.+...-.+|++.++.|. .+|..|+.+...+...+..+...+..+ +..++.++..+.
T Consensus 111 ~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~ 183 (218)
T cd07596 111 DRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFH 183 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 334555566667766667766666664 356666666666666666665555444 345556666554
No 300
>PRK14127 cell division protein GpsB; Provisional
Probab=37.22 E-value=55 Score=26.61 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
.|..++..|+.+|..|..++..+..
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 301
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.12 E-value=2.7e+02 Score=31.11 Aligned_cols=97 Identities=22% Similarity=0.236 Sum_probs=59.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cC--------
Q 026806 117 QSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR-------HR-------- 181 (233)
Q Consensus 117 ~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L-------~g-------- 181 (233)
+.-...-..|++|.......|......+...-..|...+..|...+..+..+=..|..+|..+ .+
T Consensus 408 E~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~ 487 (1141)
T KOG0018|consen 408 EARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRR 487 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHH
Confidence 333444455666777777777777777777777666666666666655555544444333332 11
Q ss_pred ---cchhhhHHHhcCCCCCCCCcchhhhhhhhhhhccccc
Q 026806 182 ---ADAISYLEALMPHNLMNGESYRREENLALFQSRYASS 218 (233)
Q Consensus 182 ---~~~vs~L~~~~~~~~~~~~~~~~~~~l~~~q~~~~~~ 218 (233)
-..|..|...+||.. |-=+ -|.+|.|.+|...
T Consensus 488 ~~~~eave~lKr~fPgv~--Grvi---DLc~pt~kkyeiA 522 (1141)
T KOG0018|consen 488 SRKQEAVEALKRLFPGVY--GRVI---DLCQPTQKKYEIA 522 (1141)
T ss_pred HHHHHHHHHHHHhCCCcc--chhh---hcccccHHHHHHH
Confidence 134667888887764 3333 4789999998764
No 302
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=37.10 E-value=71 Score=32.17 Aligned_cols=54 Identities=28% Similarity=0.328 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 107 GEELKLAKRRQSNRESARRSRMRKQ----------EEFKKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 107 ere~KR~RRk~sNRESARRSR~RKq----------~~leeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
.+.+||-|-|++--||-|+...==. ++=.+|..+|..|+..|..|..+|..|+.
T Consensus 251 KrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 251 KRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4556666778888888887765322 23358888999999999988888876543
No 303
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=36.92 E-value=1.3e+02 Score=28.09 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=33.3
Q ss_pred HHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 113 AKRRQSNRESA-RRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 113 ~RRk~sNRESA-RRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.=.-+.|+|.. ..+|.||+.- ..++..|+.... -..+|..|.+++..++.||.+..++|..+
T Consensus 129 ~LK~IR~~E~sl~p~R~~r~~l----~d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 129 HLKSIRNREESLQPSRDRRRKL----QDEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHhHHH----HHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 33556677754 4455555432 233333443322 23456667777777777777666666554
No 304
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=36.84 E-value=3.2e+02 Score=27.53 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
....+..+...|+++-..+...++...-.+..|..||..|..+...
T Consensus 28 ~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 28 AQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777788888877776655
No 305
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=36.57 E-value=2.9e+02 Score=28.93 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhcCcch
Q 026806 167 DENEAIVEELKLRHRADA 184 (233)
Q Consensus 167 ~EN~~LR~el~~L~g~~~ 184 (233)
.+|..|..++.+|.|-..
T Consensus 300 ~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHhhcCce
Confidence 666666666666665443
No 306
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=36.48 E-value=1.3e+02 Score=25.55 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKA---ESAVLKDELLSLSAKYG 163 (233)
Q Consensus 131 q~~leeLe~~V~~L~~---EN~~L~~el~~L~~~~~ 163 (233)
+..+.+...++..|+. .|..|..+|..|+..+.
T Consensus 33 k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3445555555555554 44455555555544444
No 307
>PRK14158 heat shock protein GrpE; Provisional
Probab=36.45 E-value=1.8e+02 Score=25.80 Aligned_cols=26 Identities=8% Similarity=-0.049 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLS 157 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~ 157 (233)
+++++|..++-.+.++...++++...
T Consensus 54 ~e~~el~d~~lR~~AefeN~RkR~~k 79 (194)
T PRK14158 54 AEAAANWDKYLRERADLENYRKRVQK 79 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555554444444443
No 308
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=36.43 E-value=1.9e+02 Score=22.07 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 026806 162 YGKLKDENEAIVEELKLR 179 (233)
Q Consensus 162 ~~~L~~EN~~LR~el~~L 179 (233)
...|..+-..|+.++..+
T Consensus 69 ~~~l~~e~~~lk~~i~~l 86 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKEL 86 (108)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555555554
No 309
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=36.43 E-value=1.5e+02 Score=22.60 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDEN 169 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN 169 (233)
|...|+.|..|+..|..++..+.+.+..+..+-
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888777777777666655
No 310
>PRK02224 chromosome segregation protein; Provisional
Probab=35.54 E-value=4.8e+02 Score=27.03 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026806 161 KYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 161 ~~~~L~~EN~~LR~el~~L 179 (233)
.+..+..+...|..++..+
T Consensus 573 ~~~~~~~~~~~l~~~~~~l 591 (880)
T PRK02224 573 EVAELNSKLAELKERIESL 591 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 311
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=35.44 E-value=1.8e+02 Score=22.95 Aligned_cols=10 Identities=40% Similarity=0.444 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 026806 167 DENEAIVEEL 176 (233)
Q Consensus 167 ~EN~~LR~el 176 (233)
.||..|+.-+
T Consensus 92 ~E~diLKKa~ 101 (121)
T PRK09413 92 MENELLKEAV 101 (121)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 312
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=35.02 E-value=1.1e+02 Score=30.95 Aligned_cols=30 Identities=27% Similarity=0.220 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 151 LKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 151 L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
|..++..|.++..+|..--...|.+|..|.
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 35 (512)
T TIGR03689 6 LQATNSSLGARNAKLAELLKAARDKLSKLK 35 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555543
No 313
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=34.79 E-value=2.2e+02 Score=22.10 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
.+.+.+.++..|..-...|+.++....+-...|..++..++..
T Consensus 13 kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 13 KLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555666666666666666666666666654
No 314
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=34.77 E-value=1.2e+02 Score=25.37 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLS 157 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~ 157 (233)
+++-|..++..|...|..|.+++..
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~l 92 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSL 92 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 315
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=34.75 E-value=1.6e+02 Score=32.68 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=33.0
Q ss_pred HhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 117 QSNRESARRSRMRK------------QEEFKKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 117 ~sNRESARRSR~RK------------q~~leeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
.-+|..|.....+. ..++++|+..+..|+.||..|..+|..|..
T Consensus 503 elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 503 ELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33555565555443 468889999999999999999999988865
No 316
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.72 E-value=2.1e+02 Score=21.97 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+++.+||.+++--+.-...|...+.....-..++...-..|-.++.++
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667766666665555555555544444444444444444444443
No 317
>PRK14139 heat shock protein GrpE; Provisional
Probab=34.68 E-value=1.9e+02 Score=25.45 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDEL 155 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el 155 (233)
+|..+.-.+.++....+++.
T Consensus 50 elkd~~lR~~AefeN~rKR~ 69 (185)
T PRK14139 50 ELQDSFLRAKAETENVRRRA 69 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444333333333
No 318
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=34.64 E-value=1e+02 Score=24.40 Aligned_cols=23 Identities=22% Similarity=0.036 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026806 137 LQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~ 159 (233)
++.++..|+.++..|..++..|.
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLK 98 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLK 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 319
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=34.64 E-value=2.8e+02 Score=23.35 Aligned_cols=71 Identities=13% Similarity=0.204 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CcchhhhHHHhcC--CCCCCCCcc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH----RADAISYLEALMP--HNLMNGESY 202 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~----g~~~vs~L~~~~~--~~~~~~~~~ 202 (233)
..+++....+..|...-..+..+-..|...|..|..|...|..-...+. -.+.+..+...+. +..+..+.|
T Consensus 21 ~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV~~~~F 97 (157)
T PF04136_consen 21 DQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSSVNSDSF 97 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCcccchHH
Confidence 3455556666667777777777777777888888888888876666653 2445555555553 334445555
No 320
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=34.62 E-value=3.6e+02 Score=31.92 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDEL 155 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el 155 (233)
++...++.|+.+|..|..++
T Consensus 1481 e~~e~~e~l~renk~l~~ei 1500 (1930)
T KOG0161|consen 1481 ELLEQLEELRRENKNLSQEI 1500 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444333333
No 321
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=34.59 E-value=2.5e+02 Score=22.73 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=23.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 116 RQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKL 165 (233)
Q Consensus 116 k~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L 165 (233)
+..|+.-|...= -++.+++++..++..+-.+-..|..++..+..++..+
T Consensus 40 ~~~n~~lAe~nL-~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 40 LAENEELAEQNL-SLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666555432 2234555555555555555555555555555444444
No 322
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=34.17 E-value=44 Score=23.82 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLK 152 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~ 152 (233)
-++.|||.+|..|+.-|..|-
T Consensus 18 vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHH
Confidence 356677777777777776664
No 323
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=33.91 E-value=36 Score=34.29 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDEL 155 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el 155 (233)
++++|++++++|+++...|..++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 44455555555554444333333
No 324
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=33.88 E-value=2.9e+02 Score=23.77 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+.+.|..++..++.+...|...+.....++..+...-..+...+....
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~ 127 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCR 127 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 5666777777777777777777776666666666665555555555443
No 325
>PRK14148 heat shock protein GrpE; Provisional
Probab=33.66 E-value=2.1e+02 Score=25.35 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=4.5
Q ss_pred hhhhHHHhc
Q 026806 184 AISYLEALM 192 (233)
Q Consensus 184 ~vs~L~~~~ 192 (233)
.+++|...+
T Consensus 99 V~DnlerAl 107 (195)
T PRK14148 99 VIDSIEQAL 107 (195)
T ss_pred HHhHHHHHH
Confidence 355555544
No 326
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=33.65 E-value=96 Score=25.35 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 026806 137 LQKAVEELKAESAVLK 152 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~ 152 (233)
|+++-+-|+-++.-|.
T Consensus 84 LeEENNlLklKievLL 99 (108)
T cd07429 84 LEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 327
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=33.64 E-value=2.5e+02 Score=22.52 Aligned_cols=46 Identities=26% Similarity=0.323 Sum_probs=27.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 116 RQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 116 k~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
--.-||.|+.-.-=++.+.+.|+.--+.|..+...-..+|..|.+.
T Consensus 53 ~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 53 AFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777777766666665666655556665555566666655543
No 328
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.37 E-value=2.1e+02 Score=26.79 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=23.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 115 RRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 115 Rk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
....+-+.+..-=..++..+.+|+.++..|+.+-.....+...|.
T Consensus 225 ~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~ 269 (344)
T PF12777_consen 225 EAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELE 269 (344)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445544455566666666666666655554444444433
No 329
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=33.22 E-value=1.4e+02 Score=26.27 Aligned_cols=37 Identities=35% Similarity=0.377 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKD 167 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~ 167 (233)
.+++..|+.+.+.|..++..|..+...+.+.|..|..
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~ 146 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIV 146 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888888777777766654
No 330
>PRK04863 mukB cell division protein MukB; Provisional
Probab=33.15 E-value=5.2e+02 Score=29.71 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
+|..++.....+...+..++..+..++..++.+-..|+.++.
T Consensus 359 ELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 359 ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444333
No 331
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=32.93 E-value=1.1e+02 Score=22.94 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLS 157 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~ 157 (233)
+.||+.++.-|+.|..+|..++..
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777777777666543
No 332
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=32.82 E-value=96 Score=20.44 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
.|-.+.++|+....+|+.+++.|+.
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556667777777777777776654
No 333
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.62 E-value=3.2e+02 Score=28.75 Aligned_cols=42 Identities=38% Similarity=0.466 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVE 174 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~ 174 (233)
.+..|+..|+.|+.+|+.|..++..+......|..+-.+++.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555444444444444433
No 334
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=32.62 E-value=1.3e+02 Score=26.93 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 139 KAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.....|..||..|++++..|..+...+ ..|+.+...|
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L 105 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQEL----EQLEAENARL 105 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 445566666666666666554444333 2444444443
No 335
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=32.54 E-value=1.4e+02 Score=25.04 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhc
Q 026806 144 LKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALM 192 (233)
Q Consensus 144 L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~ 192 (233)
+...--++..++..|..+...=..||..|+.++.+|..++.|-++--..
T Consensus 58 ~q~~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~dLss~eRIldiAkk~ 106 (120)
T COG4839 58 VQTKAYQVQGEITDLESKISEQKTENDDLKQEVKDLSSPERILDIAKKA 106 (120)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhccHHHHHHHHHHc
Confidence 4455556778888899999999999999999999999999887766444
No 336
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=32.36 E-value=4.3e+02 Score=26.63 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 141 VEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 141 V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
+..+...-+.|..++..|..++..|..+-..|-.+-..|+|
T Consensus 139 lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~ 179 (499)
T COG4372 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQA 179 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555455543
No 337
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.35 E-value=3.3e+02 Score=29.84 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=17.2
Q ss_pred chhhhhhhhhhhhh--chhHHHHhHhhcch
Q 026806 30 SDESIDINRDIFAT--KREKINQMHEADDD 57 (233)
Q Consensus 30 ~~~~~~~~~~~~~~--~r~~~~~m~~~~d~ 57 (233)
+-+|+----+|.-+ .|-.|.|+|+++|+
T Consensus 177 ~~~s~~q~~eWAVp~~~klKY~QlFNa~Dk 206 (1118)
T KOG1029|consen 177 SIESVNQLEEWAVPQHNKLKYRQLFNALDK 206 (1118)
T ss_pred cchhhhhhhhccccchhhhHHHHHhhhccc
Confidence 33444333455544 35679999999775
No 338
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=32.30 E-value=2.7e+02 Score=24.34 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 026806 136 KLQKAVEELKA 146 (233)
Q Consensus 136 eLe~~V~~L~~ 146 (233)
.+|.++..|++
T Consensus 40 KvEeEI~TLrq 50 (162)
T PF04201_consen 40 KVEEEIQTLRQ 50 (162)
T ss_pred HHHHHHHHHHH
Confidence 33334333333
No 339
>PHA02109 hypothetical protein
Probab=31.77 E-value=1.5e+02 Score=26.84 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=4.1
Q ss_pred hhHHHHhHh
Q 026806 45 REKINQMHE 53 (233)
Q Consensus 45 r~~~~~m~~ 53 (233)
|-.||+|..
T Consensus 16 RRR~NDIA~ 24 (233)
T PHA02109 16 RRRFNDIAA 24 (233)
T ss_pred HhhhccHHH
Confidence 344555443
No 340
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=31.69 E-value=3.8e+02 Score=28.42 Aligned_cols=62 Identities=24% Similarity=0.254 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 026806 123 ARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADA 184 (233)
Q Consensus 123 ARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~ 184 (233)
+.++..-=|.+++..+.++.+++.....+..++..+......++.|+..|+..+..+.-.+.
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 44555555778888889999999999999999999999999999999999999998765444
No 341
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=31.59 E-value=2.5e+02 Score=33.05 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=51.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 117 QSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 117 ~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+.-.+.+++++.-=.+.+..++.+++.|++|...|+..+..+.+.-..++.|..++..++..+.
T Consensus 1645 q~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1645 QRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3356788888888888888888888888888888888888888887788888777777777764
No 342
>PRK11546 zraP zinc resistance protein; Provisional
Probab=31.28 E-value=2e+02 Score=24.59 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..+.+|..++-.-+.|-..|...-..=.+....|..|...|+.+|.+++
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333334556666667777776666654
No 343
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=31.25 E-value=2.8e+02 Score=22.34 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 139 KAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
.++...-.-|++|..--..|+++|..|..-+..|...+..
T Consensus 57 ~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 57 QQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555667777777777788888888888888777654
No 344
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=30.85 E-value=2.9e+02 Score=28.01 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 148 SAVLKDELLSLSAKYGKLKDENEAIVE 174 (233)
Q Consensus 148 N~~L~~el~~L~~~~~~L~~EN~~LR~ 174 (233)
.+.+.++++.|.++|..-.-||..|..
T Consensus 423 lqsvqRELeVLSEQYSQKCLEnahLaq 449 (593)
T KOG4807|consen 423 LQSVQRELEVLSEQYSQKCLENAHLAQ 449 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444433
No 345
>PRK14161 heat shock protein GrpE; Provisional
Probab=30.79 E-value=2.3e+02 Score=24.65 Aligned_cols=9 Identities=11% Similarity=0.099 Sum_probs=4.2
Q ss_pred hhhhHHHhc
Q 026806 184 AISYLEALM 192 (233)
Q Consensus 184 ~vs~L~~~~ 192 (233)
.+++|....
T Consensus 78 v~DnlerAl 86 (178)
T PRK14161 78 VSDNLSRAL 86 (178)
T ss_pred HHhHHHHHH
Confidence 344554444
No 346
>PRK14147 heat shock protein GrpE; Provisional
Probab=30.52 E-value=2.3e+02 Score=24.54 Aligned_cols=21 Identities=5% Similarity=0.026 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDE 154 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~e 154 (233)
+++|..++-.+.++-...+++
T Consensus 34 ~~elkd~~lR~~Ad~eN~rkR 54 (172)
T PRK14147 34 IALVKADALRERADLENQRKR 54 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 347
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=30.48 E-value=3.6e+02 Score=23.36 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=9.7
Q ss_pred CcccchHHHHHHHHHH
Q 026806 102 RITKDGEELKLAKRRQ 117 (233)
Q Consensus 102 ~~~~Dere~KR~RRk~ 117 (233)
|..+++++.||.+-..
T Consensus 43 pa~~eEre~rR~kq~E 58 (157)
T PF15236_consen 43 PAQIEERERRRQKQLE 58 (157)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445677777766443
No 348
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=30.32 E-value=2.4e+02 Score=28.62 Aligned_cols=46 Identities=15% Similarity=0.269 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
+.+++|+.++..+..+-..+..++..+...+..+..+=..|+.++.
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~ 254 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR 254 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544444444444444444333
No 349
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.25 E-value=1.6e+02 Score=24.38 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLK 166 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~ 166 (233)
.+.+.|+.+|..|+..-..|..++..|+..+..+.
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666666666666666655543
No 350
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=30.15 E-value=2.8e+02 Score=23.46 Aligned_cols=11 Identities=9% Similarity=0.271 Sum_probs=6.4
Q ss_pred hhhhhhhhhcc
Q 026806 205 EENLALFQSRY 215 (233)
Q Consensus 205 ~~~l~~~q~~~ 215 (233)
+.-|.+.|+.+
T Consensus 122 deqi~~lkes~ 132 (155)
T PF06810_consen 122 DEQIKALKESD 132 (155)
T ss_pred HHHHHHHHhcC
Confidence 45566666544
No 351
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=30.08 E-value=1.3e+02 Score=29.82 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALM 192 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~ 192 (233)
+++-|++.+-..|+..|+.|..++ ..|+.++..+...+.-..+.-++...++.+
T Consensus 290 q~~~E~~~rqk~le~~n~~L~~ri-------eeLk~~~~~~~~~~~~~~~~~~~~~~e~~i 343 (411)
T KOG1318|consen 290 QRARELENRQKKLESTNQELALRI-------EELKSEAGRHGLQVEPSKLTNSLEGSEQII 343 (411)
T ss_pred HHHHHHHhhhhHHHhHHHHHHHHH-------HHHHHHHHHhcCccccccccccchhhhhhh
Confidence 344455555555555555444444 445555555555555555444444444433
No 352
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=30.02 E-value=2.6e+02 Score=28.30 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--cchhhhHHHhcCCC
Q 026806 141 VEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR--ADAISYLEALMPHN 195 (233)
Q Consensus 141 V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g--~~~vs~L~~~~~~~ 195 (233)
..+-.-||..|...+..-.+-+..-..||.+|-..-.+|.+ ...|..|+..+.|.
T Consensus 437 YSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgd 493 (593)
T KOG4807|consen 437 YSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGD 493 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccC
Confidence 33334577777777766666566666677777666666655 33578888777543
No 353
>PRK14155 heat shock protein GrpE; Provisional
Probab=30.01 E-value=1.9e+02 Score=25.91 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLS 157 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~ 157 (233)
+++.+|..+.-.+.++-..++++...
T Consensus 27 ~e~~elkd~~lR~~AefeN~RKR~~k 52 (208)
T PRK14155 27 AEVAALKDQALRYAAEAENTKRRAER 52 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 354
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=29.93 E-value=1.8e+02 Score=28.53 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESA 149 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~ 149 (233)
+.++|..+|++|+.+..
T Consensus 47 EN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 47 ENNDLKIEVERLENEML 63 (420)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555544433
No 355
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=29.85 E-value=2.1e+02 Score=30.51 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDE-------LLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~e-------l~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
||..++..|..++..+......++.. +....+++..|.+++..|+.+|..
T Consensus 298 rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~ 354 (775)
T PF10174_consen 298 RKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEE 354 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444444444444 444444444455555555544444
No 356
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=29.83 E-value=98 Score=27.59 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 144 LKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 144 L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
|+.+-..|+..+..|......|..|+..|+.++..
T Consensus 110 lE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~ 144 (198)
T KOG0483|consen 110 LEKDYESLKRQLESLRSENDRLQSEVQELVAELSS 144 (198)
T ss_pred hhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Confidence 33333444444444444444444555555555554
No 357
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.53 E-value=4.5e+02 Score=29.44 Aligned_cols=68 Identities=16% Similarity=0.085 Sum_probs=53.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 112 LAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 112 R~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
..+=.+.||+--..--+++-..++++..+.-.|+.+++.|..++..|.+++..+...+..|+..-..|
T Consensus 374 alkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L 441 (1195)
T KOG4643|consen 374 ALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKL 441 (1195)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788888877888888889999999999999999888888888888887777777665554444
No 358
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=29.42 E-value=1.9e+02 Score=26.90 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKD 167 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~ 167 (233)
-.+.|+.++..|+.+|..|+.++..+..+......
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~ 67 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLNAADQ 67 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777766655544433
No 359
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=29.41 E-value=4.8e+02 Score=24.44 Aligned_cols=52 Identities=25% Similarity=0.263 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.-+.+.+.|..+...++.|+.........|..-|..|..+|..|+.+...+.
T Consensus 47 ~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~ 98 (309)
T PF09728_consen 47 KLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRA 98 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346677888888888999888888888899999999999999998776653
No 360
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.27 E-value=3.4e+02 Score=22.64 Aligned_cols=50 Identities=24% Similarity=0.366 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
..+++++.++..+..+..+-..|..++....+....+..+-..+......
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQ 176 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333344444444444444444333
No 361
>PRK14148 heat shock protein GrpE; Provisional
Probab=29.24 E-value=2.1e+02 Score=25.34 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L 158 (233)
+.+++|..++-.+.++...++++...=
T Consensus 54 ~e~~elkd~~lR~~Ae~eN~rKR~~rE 80 (195)
T PRK14148 54 DSCDQFKDEALRAKAEMENIRKRAERD 80 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 362
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=29.23 E-value=7e+02 Score=27.38 Aligned_cols=46 Identities=28% Similarity=0.463 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
+++++..++..|......+..++..+.+.+..+..+-..++.++..
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 485 (1163)
T COG1196 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSS 485 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444433
No 363
>PRK14145 heat shock protein GrpE; Provisional
Probab=29.22 E-value=3e+02 Score=24.55 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~ 156 (233)
++.+|..++-.+.++....+++..
T Consensus 60 e~~el~d~~lR~~AEfeN~rkR~~ 83 (196)
T PRK14145 60 EAQEYLDIAQRLKAEFENYRKRTE 83 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 364
>PF14282 FlxA: FlxA-like protein
Probab=29.04 E-value=2.7e+02 Score=21.94 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 152 KDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 152 ~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
..++..|..++..|..+=..|..+...
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333
No 365
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=29.02 E-value=1.4e+02 Score=27.63 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 147 ESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 147 EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
++..|..++..+..++..+..|-..|+.++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344444444444444555666666666666654
No 366
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.89 E-value=3.1e+02 Score=30.64 Aligned_cols=51 Identities=27% Similarity=0.384 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
...++-|.-++++|+.+...+...+..+...+..|..|+..|+..+....+
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~ 864 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEK 864 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 345566777777788888888888888888888888888888887777663
No 367
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=28.63 E-value=2.6e+02 Score=22.35 Aligned_cols=58 Identities=21% Similarity=0.137 Sum_probs=28.6
Q ss_pred HHHHHHHhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 111 KLAKRRQSNRESARRSRMRK--------QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDE 168 (233)
Q Consensus 111 KR~RRk~sNRESARRSR~RK--------q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~E 168 (233)
.+.+|.+-.+..+=..---. ...+..|..+++.++++|..|..+...|.++...|..+
T Consensus 21 ~~~~~~l~~~l~~~l~~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 21 VRRRRILTLVLLALLALFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445555555554433222 22334455555555555555555555555555555444
No 368
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.51 E-value=84 Score=22.02 Aligned_cols=11 Identities=55% Similarity=0.848 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 026806 133 EFKKLQKAVEE 143 (233)
Q Consensus 133 ~leeLe~~V~~ 143 (233)
+++.|+.+++.
T Consensus 56 ~l~~le~e~~~ 66 (68)
T PF06305_consen 56 ELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 369
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=28.49 E-value=6.5e+02 Score=27.76 Aligned_cols=63 Identities=24% Similarity=0.213 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 118 SNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 118 sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+--++++.+.-...+...+|..+|+.+..+-..+..+.+.....+..++.|-.-|-.+++.+.
T Consensus 452 kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 452 KQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555554455555555555555555555444444444444444444444444444443
No 370
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.47 E-value=5.1e+02 Score=24.42 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEA 190 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~ 190 (233)
++..|..++..+..++...+.++..++.+...+...-..+..+..++. +.|..++.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~--~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN--TEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 444444555555555555555555555555555544444444444443 33444443
No 371
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=28.44 E-value=4.4e+02 Score=26.96 Aligned_cols=66 Identities=24% Similarity=0.295 Sum_probs=35.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhc
Q 026806 111 KLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKL--------KDENEAIVEELKLRH 180 (233)
Q Consensus 111 KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L--------~~EN~~LR~el~~L~ 180 (233)
+..++|.+.-|.-+|- .+.+.+|+.+++.-+.|+....-+-..|.....+. -.||..+|.+|..++
T Consensus 242 ehv~km~kdle~Lq~a----Eqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR 315 (575)
T KOG4403|consen 242 EHVNKMMKDLEGLQRA----EQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLR 315 (575)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHH
Confidence 3455666666655443 36677777777777777554433333333333211 235556665555554
No 372
>PRK14163 heat shock protein GrpE; Provisional
Probab=28.39 E-value=2.6e+02 Score=25.33 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLS 157 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~ 157 (233)
+++++|..++-.|.++-..++++..+
T Consensus 54 ~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 54 TALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 373
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.35 E-value=1.8e+02 Score=30.70 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.++-|||.+-..|..|..++..+++.|++.+.....|-..|+-++..-
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 456666666666666666666666666666666666666666555543
No 374
>PRK14141 heat shock protein GrpE; Provisional
Probab=28.12 E-value=2.1e+02 Score=25.75 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~ 156 (233)
+++|..++..+.++-..++++..
T Consensus 47 ~~elkd~~lR~~Ae~eN~RKR~~ 69 (209)
T PRK14141 47 NAELKDRMLRLAAEMENLRKRTQ 69 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 375
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=28.05 E-value=2.1e+02 Score=27.43 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 138 QKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 138 e~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
..++..|.+||..|..++..=.+....|++|-...+.+|+.
T Consensus 62 ~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaa 102 (305)
T PF14915_consen 62 NGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAA 102 (305)
T ss_pred hhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666655
No 376
>PRK14143 heat shock protein GrpE; Provisional
Probab=28.05 E-value=1.9e+02 Score=26.40 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
+++|+.++..|+....++..++.-++++.
T Consensus 76 l~~l~~e~~elkd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAADFDNFRKRT 104 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555545555554444443
No 377
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=28.05 E-value=1.7e+02 Score=32.78 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAI 172 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~L 172 (233)
+.++.+|+.++..|..+...|..++..|.++...|..|-..+
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~ 782 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELAGA 782 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345677777777777777777777777777777666665444
No 378
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.02 E-value=2.7e+02 Score=30.39 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+++++|...+..+......|--+++.+.+....|..||..|..++...
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555544
No 379
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=27.92 E-value=3.6e+02 Score=22.49 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
++.+++.++..++.....+...++...++...+......+..++.++
T Consensus 103 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 103 RIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444443
No 380
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=27.87 E-value=93 Score=29.77 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 148 SAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 148 N~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
|=-.+.+|..+.+++.+|+.+..+|+.+|.++.
T Consensus 284 nlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 284 NLPTRSELDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333567888888888888888888888888764
No 381
>PRK14151 heat shock protein GrpE; Provisional
Probab=27.59 E-value=2.7e+02 Score=24.17 Aligned_cols=23 Identities=4% Similarity=-0.026 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~ 156 (233)
+++|..++-.+.++-..++++..
T Consensus 36 ~~el~d~~lR~~Ae~eN~rkR~~ 58 (176)
T PRK14151 36 LAAAKDQSLRAAADLQNVRRRAE 58 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 382
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=27.57 E-value=2.5e+02 Score=23.67 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 136 KLQKAVEELKAESAVLK-----DELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~-----~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
+|..++.+|+.|...+. .+-..|++++++++.|-..+...+..
T Consensus 44 ~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 44 QLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444544444432 22334455555555555555555444
No 383
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=27.56 E-value=1.9e+02 Score=21.95 Aligned_cols=26 Identities=42% Similarity=0.658 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L 158 (233)
.+.+|+.++..|+.+...+..++..+
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~ 96 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQAL 96 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 384
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=27.54 E-value=4.2e+02 Score=23.19 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIV 173 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR 173 (233)
+..+..++..++.+...|.-+...|.+++..|..|-..|.
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444443
No 385
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.53 E-value=4e+02 Score=24.49 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 123 ARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 123 ARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.-+.|.-||..+++|...+..-+.+...|..+|..+++.. +.=|..++.++....
T Consensus 151 vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~v---e~f~~~~~~E~~~Fe 205 (240)
T cd07667 151 VLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRV---ECFNADLKADMERWQ 205 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4456777888888887777544555556777777666555 566777777776653
No 386
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=27.31 E-value=4.2e+02 Score=29.57 Aligned_cols=52 Identities=21% Similarity=0.207 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+.+..+-+|+.+..+.+.....+...+..|..+...+...+..++.++..|.
T Consensus 672 ~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~ 723 (1074)
T KOG0250|consen 672 RLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELK 723 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334555555555555555555555566666566666666665655555543
No 387
>PHA03011 hypothetical protein; Provisional
Probab=27.28 E-value=3.2e+02 Score=22.58 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
+.+++|-.+...|-.|-.-+..++..+..-.+.-..|=.-||+++..
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDk 110 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDK 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 45666666666666666666666655544444444444444444444
No 388
>PRK04863 mukB cell division protein MukB; Provisional
Probab=27.23 E-value=4.6e+02 Score=30.09 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=7.6
Q ss_pred HHHHHHhhHHHHHHHH
Q 026806 112 LAKRRQSNRESARRSR 127 (233)
Q Consensus 112 R~RRk~sNRESARRSR 127 (233)
+.+.....++.|++.+
T Consensus 322 rL~kLEkQaEkA~kyl 337 (1486)
T PRK04863 322 AESDLEQDYQAASDHL 337 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555555443
No 389
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=27.13 E-value=2.5e+02 Score=24.02 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhcC
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALMP 193 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~~ 193 (233)
++.|+.+|..+..|-..|..+...|.+..+.-..--..+=..+.++. ++|++|.+..+
T Consensus 40 ~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tld~vf~aV~dl~--~SV~~ln~s~r 97 (139)
T COG4768 40 LKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATLDPVFDAVKDLG--QSVSDLNQSVR 97 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHH--HHHHHHHHHHH
Confidence 45566666666666666666666666655555544444444455543 56666666554
No 390
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=26.98 E-value=4e+02 Score=29.96 Aligned_cols=56 Identities=20% Similarity=0.301 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhh
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAIS 186 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs 186 (233)
+..++++..++..++.+-..+..++..+.+....+..+-..|+.++..|.+.+..-
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~ 330 (1353)
T TIGR02680 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQ 330 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 34567788888888888888888888888889999999999999999988776653
No 391
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=26.95 E-value=2.5e+02 Score=26.48 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+++-|..++..|+.....|.+++......+..+......|+.++..|+
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555566666666655
No 392
>PRK14154 heat shock protein GrpE; Provisional
Probab=26.82 E-value=4.4e+02 Score=23.71 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=7.5
Q ss_pred hhhhhhhchhHHHHhHh
Q 026806 37 NRDIFATKREKINQMHE 53 (233)
Q Consensus 37 ~~~~~~~~r~~~~~m~~ 53 (233)
|+++.+.-+..+.+...
T Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (208)
T PRK14154 10 NPESETKAKNKWEKVME 26 (208)
T ss_pred CchhhhhhhhHHHHHHH
Confidence 34444444444444443
No 393
>PRK10698 phage shock protein PspA; Provisional
Probab=26.78 E-value=4.5e+02 Score=23.31 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
..+..|+.++.........|...+..|...+..+...-..|.++...
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666667777777777777776666666555544
No 394
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=26.75 E-value=2.9e+02 Score=28.55 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+++.-+..+..++..+-.....+..+|+.+..+......||..|..+|+++.
T Consensus 195 keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~q 246 (596)
T KOG4360|consen 195 KEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQ 246 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4455555666666666666666777777777788888888888888888775
No 395
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=26.72 E-value=1.7e+02 Score=27.19 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
.|+.+++.|+.+...+..++..+..+...+..+...|+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSP 42 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444555555555555555555666666666666666543
No 396
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=26.65 E-value=67 Score=31.67 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026806 126 SRMRKQEEFKKLQKAVEELKAES 148 (233)
Q Consensus 126 SR~RKq~~leeLe~~V~~L~~EN 148 (233)
.|.-|++++++|+.++..|++|.
T Consensus 396 ~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 396 EREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667788999999999999874
No 397
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=26.58 E-value=6.2e+02 Score=24.84 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
|..-...+..+...|..++..+..+...+..+-..|+.+|..+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333344444455555555555556666666666666666655544
No 398
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=26.36 E-value=2e+02 Score=21.90 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L 158 (233)
+.++.|+.++..++.+...+..++..|
T Consensus 77 ~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 77 EELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677777777777777777776654
No 399
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=26.26 E-value=1.6e+02 Score=26.55 Aligned_cols=40 Identities=30% Similarity=0.277 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 140 AVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 140 ~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+++..+.+.+....+...|++.+..+..|...||..+...
T Consensus 67 ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 67 ELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred hHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 4556666666677777777788888888888888888886
No 400
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=25.93 E-value=3.9e+02 Score=22.33 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+..+..+...++.+.......+..+...+..+..+-..|+.....|
T Consensus 86 l~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 86 LHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555666666666666665555554
No 401
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=25.85 E-value=2.5e+02 Score=22.04 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 140 AVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 140 ~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+|...-.||..|+.++.+++.-+ ...|-..|-+++..|
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L 82 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISEL 82 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHH
Confidence 44556678888888887776555 444555555555544
No 402
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.74 E-value=6.9e+02 Score=27.76 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 026806 124 RRSRMRKQEEFKKLQK 139 (233)
Q Consensus 124 RRSR~RKq~~leeLe~ 139 (233)
+.-..+.+..+..|+.
T Consensus 849 ~~e~e~~~~eI~~Lq~ 864 (1311)
T TIGR00606 849 RKLIQDQQEQIQHLKS 864 (1311)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 403
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=25.52 E-value=3.8e+02 Score=22.00 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAES 148 (233)
Q Consensus 134 leeLe~~V~~L~~EN 148 (233)
..++...+..|+.++
T Consensus 92 ~~~~a~~~~~l~~~L 106 (139)
T PF13935_consen 92 NEDIALDVQKLRVEL 106 (139)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444333
No 404
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=25.51 E-value=3.1e+02 Score=26.86 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYG----KLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~----~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
..+|+-|..+|..|.---..|..+|..+.++++ .+..--..+..+|..++|+...-+++
T Consensus 220 t~RMqvlkrQv~SL~~HQ~KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr~c~~kvevd~e 282 (410)
T KOG4715|consen 220 TARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEVDME 282 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCcccccHH
Confidence 467889999999999999999999987776665 33333455677778888766544443
No 405
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=25.46 E-value=4.1e+02 Score=23.38 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 124 RRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 124 RRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
+.-=.+|++.+.+-..+...++.+...|..+|....
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445566666666666666666666666665543
No 406
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.44 E-value=4.7e+02 Score=27.90 Aligned_cols=46 Identities=28% Similarity=0.328 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
.-+..|..+++.|+.++. ++..|+..+..|+-||-.|+.++..+.+
T Consensus 275 ~tv~~LqeE~e~Lqskl~----~~~~l~~~~~~LELeN~~l~tkL~rwE~ 320 (716)
T KOG4593|consen 275 ETVGLLQEELEGLQSKLG----RLEKLQSTLLGLELENEDLLTKLQRWER 320 (716)
T ss_pred hhhHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334455555555555553 3345678889999999999999988765
No 407
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=25.43 E-value=23 Score=32.55 Aligned_cols=47 Identities=23% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+-.+....++.....+..|++-|..|..+...|..||..|+++-+.|
T Consensus 116 ~pKDdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 116 APKDDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -----------------------------------------------
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667777777777777777777777777777777777777666
No 408
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=25.42 E-value=4.2e+02 Score=22.80 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 120 RESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 120 RESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L 158 (233)
.|++|....+-+.+++++..+|...-.+...|...-...
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~a 60 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQA 60 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666777777776666655555555544444333
No 409
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=25.27 E-value=3.4e+02 Score=21.35 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
.++.|..+|..|.....+|...+..++........|=.+--++|-.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6778888888888888888888888877776666665555444444
No 410
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=25.27 E-value=3.9e+02 Score=22.03 Aligned_cols=20 Identities=45% Similarity=0.556 Sum_probs=13.3
Q ss_pred cchHHHHHHHHHHhhHHHHH
Q 026806 105 KDGEELKLAKRRQSNRESAR 124 (233)
Q Consensus 105 ~Dere~KR~RRk~sNRESAR 124 (233)
.+|++-+-.+|-.+||||-+
T Consensus 49 KEER~K~E~~~q~r~rES~~ 68 (121)
T PF10669_consen 49 KEERSKKEEKRQKRNRESKR 68 (121)
T ss_pred HHHHHHHHHHHHHHhhhhHH
Confidence 45666566667777888754
No 411
>PRK14144 heat shock protein GrpE; Provisional
Probab=25.23 E-value=3.4e+02 Score=24.27 Aligned_cols=24 Identities=8% Similarity=-0.049 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~ 156 (233)
++++|..++-.+.++-..++++..
T Consensus 60 e~~elkdk~lR~~AefeN~RKR~~ 83 (199)
T PRK14144 60 KAHENWEKSVRALAELENVRRRME 83 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 412
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=25.16 E-value=7.1e+02 Score=25.03 Aligned_cols=6 Identities=17% Similarity=-0.031 Sum_probs=2.2
Q ss_pred HHhhcC
Q 026806 176 LKLRHR 181 (233)
Q Consensus 176 l~~L~g 181 (233)
|..+.|
T Consensus 138 le~~a~ 143 (514)
T TIGR03319 138 LERISG 143 (514)
T ss_pred HHHHhC
Confidence 333333
No 413
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=25.07 E-value=1.6e+02 Score=24.13 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCcchhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR--HRADAIS 186 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L--~g~~~vs 186 (233)
.-++.+..+-..+..|.+.|..+++.| .++.+...|.+.-... .|.+.++
T Consensus 42 ~F~~kV~~qH~~~~~e~r~L~kKi~~l-----~veRkmr~Les~p~~W~~~gf~~~a 93 (109)
T PF11690_consen 42 DFIDKVVDQHQRYCDERRKLRKKIQDL-----RVERKMRALESHPFDWERRGFDKVA 93 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhccCChHHHHHhchHHhc
Confidence 456677777788888888888888877 3455555555444443 4444444
No 414
>PRK14157 heat shock protein GrpE; Provisional
Probab=24.96 E-value=2.7e+02 Score=25.44 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
+++.+|..++-.+.++....+++..+=.+
T Consensus 91 ~e~~e~kd~llR~~AEfeNyRKR~~rE~e 119 (227)
T PRK14157 91 KEAAEYLEALQRERAEFINYRNRTQKEQD 119 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444333
No 415
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=24.91 E-value=4.4e+02 Score=24.43 Aligned_cols=54 Identities=19% Similarity=0.080 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 120 RESARRSRMRKQEE----FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIV 173 (233)
Q Consensus 120 RESARRSR~RKq~~----leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR 173 (233)
=+|+=---+||.-. -..++.+++.|+.++..|...|..+..++...+.-|.++|
T Consensus 169 yeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r 226 (259)
T KOG4001|consen 169 YESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEER 226 (259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 35666666777432 2346677777777777777777777666655555544444
No 416
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=24.89 E-value=4.2e+02 Score=25.36 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 144 LKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 144 L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
++.|.+.-..+...|.++...|...|..||+++++..
T Consensus 69 ~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~ 105 (389)
T PF06216_consen 69 KEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMR 105 (389)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444555566666666666654
No 417
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=24.85 E-value=6.1e+02 Score=24.15 Aligned_cols=67 Identities=25% Similarity=0.324 Sum_probs=0.0
Q ss_pred ccchHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 104 TKDGEELKL-AKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 104 ~~Dere~KR-~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
..++.+.|+ +-++..++-.=+| .+|..++..+..+-..|..++..+.+....+..+-..|-.++..+
T Consensus 7 ~~~E~e~K~~~lk~~~~e~~ekR---------~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~el 74 (294)
T COG1340 7 KLDELELKRKQLKEEIEELKEKR---------DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQEL 74 (294)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 418
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.84 E-value=3.9e+02 Score=27.37 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
..++++|..++............+...|..++...+.+...|..+|.
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~ 465 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELK 465 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433333333333333
No 419
>PRK14161 heat shock protein GrpE; Provisional
Probab=24.79 E-value=3.8e+02 Score=23.33 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLK 152 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~ 152 (233)
+|..++-.+.++-..++
T Consensus 37 elkd~~lR~~AefeN~r 53 (178)
T PRK14161 37 ELKDKLIRTTAEIDNTR 53 (178)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 420
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.53 E-value=87 Score=21.93 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAV 150 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~ 150 (233)
..++.+++.++.|+.+
T Consensus 51 ~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 51 RRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
No 421
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.44 E-value=5.9e+02 Score=28.30 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 130 KQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVE 174 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~ 174 (233)
-+..+++|..++..|..+...+..++..|......+..+...++.
T Consensus 886 le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1311)
T TIGR00606 886 FEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIS 930 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666665555554443
No 422
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=24.43 E-value=4.1e+02 Score=24.03 Aligned_cols=52 Identities=10% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 128 MRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 128 ~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
..++-++++|+.+++...+.-.+|...+.......+..+..+.+|..++-.+
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnsl 128 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSL 128 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
No 423
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=24.38 E-value=2.3e+02 Score=29.93 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
-+.+++|.-+-..|+.|+...+.--..|.+++.+|+.|-..+|+++..-
T Consensus 328 IakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 328 IAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888777777777777777887777777777654
No 424
>PF15556 Zwint: ZW10 interactor
Probab=24.30 E-value=5.7e+02 Score=23.64 Aligned_cols=55 Identities=16% Similarity=0.321 Sum_probs=31.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 115 RRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDEN 169 (233)
Q Consensus 115 Rk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN 169 (233)
-|.+.|.+-..-......|+..|..-.+.++..-..-..++..|.+.+..|..+-
T Consensus 117 a~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa 171 (252)
T PF15556_consen 117 AMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQA 171 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555555555567777776666666555555555555555554444433
No 425
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.26 E-value=3.7e+02 Score=27.33 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 128 MRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 128 ~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
.|.+.++..+-.+++.|+.||-+ .+++.|......|...-..|+..+..|.+
T Consensus 281 ~rrhrEil~k~eReasle~Enlq--mr~qqleeentelRs~~arlksl~dklae 332 (502)
T KOG0982|consen 281 ERRHREILIKKEREASLEKENLQ--MRDQQLEEENTELRSLIARLKSLADKLAE 332 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555666555533 33444444444444444444444444443
No 426
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=24.26 E-value=5.3e+02 Score=23.24 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 130 KQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAI 172 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~L 172 (233)
|..+++..+.++.....+...|+.++..|......|..+-..+
T Consensus 64 K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 64 KQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred hhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 5556666666666666666666666666666666665555554
No 427
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=24.24 E-value=4.6e+02 Score=22.49 Aligned_cols=45 Identities=24% Similarity=0.397 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
.+..|+..+..+......|...+..|..++..+..+=..|+.+..
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555544443
No 428
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=24.13 E-value=3.9e+02 Score=21.69 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
..+......+..++..-..|..==..-.+++.....||..|+..|..
T Consensus 14 ~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 14 AALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 33334444443333333333333334456777788899999988876
No 429
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.77 E-value=2.4e+02 Score=29.66 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc---------------hhhhHHHhcCCCC
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRAD---------------AISYLEALMPHNL 196 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~---------------~vs~L~~~~~~~~ 196 (233)
..+..|...+..-+.||..|......+.+....++.+-.+||.+|.++.--+ .+-+.-.+..++|
T Consensus 114 neLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQ 193 (772)
T KOG0999|consen 114 NELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQ 193 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhh
Confidence 3444444555555556666666666666666667777777888887762211 0112223335778
Q ss_pred CCCCcchhhh
Q 026806 197 MNGESYRREE 206 (233)
Q Consensus 197 ~~~~~~~~~~ 206 (233)
++-||..-|+
T Consensus 194 VEyEglkhei 203 (772)
T KOG0999|consen 194 VEYEGLKHEI 203 (772)
T ss_pred hhhhHHHHHH
Confidence 8888875444
No 430
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=23.76 E-value=1.6e+02 Score=30.51 Aligned_cols=45 Identities=13% Similarity=0.322 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
++..+...|+..--.|..+++.|.+-.+.|.++|..|+.++...+
T Consensus 420 ~~~~e~s~l~~~~vt~~~q~~el~~~v~~l~~~n~~l~s~~~~~r 464 (669)
T KOG0818|consen 420 EMKSELSDLRKQAVTLTKQVQELTEVVHALQASNAKLQSLMKVNR 464 (669)
T ss_pred hhhhhhhhHhhcchhhHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 566666666666667777777777788888899999998887765
No 431
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.70 E-value=3.9e+02 Score=21.49 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 145 KAESAVLKDELLSLSAKYGKLKDENEA 171 (233)
Q Consensus 145 ~~EN~~L~~el~~L~~~~~~L~~EN~~ 171 (233)
+.++..|..++..+..+......+..+
T Consensus 79 e~ei~~l~~~l~~l~~~~~~~~~~~~~ 105 (108)
T PF06210_consen 79 EQEIERLHRKLDALREKLGELLERDQE 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455666666666666666665555543
No 432
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=23.56 E-value=2.8e+02 Score=26.73 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
-|..++..|+.+...+..+|+.+...+.-+...|.-|..-|.+-.
T Consensus 179 LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 179 LLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345555566666666666666666666666667777766666543
No 433
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.48 E-value=6.2e+02 Score=27.05 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
Q 026806 120 RESARRSRMRKQEE-----FKKLQKAVEELKAESAVLKDELLS----------------------------LSAKYGKLK 166 (233)
Q Consensus 120 RESARRSR~RKq~~-----leeLe~~V~~L~~EN~~L~~el~~----------------------------L~~~~~~L~ 166 (233)
|..---.+.|+... ++....+...|+.+|..|+..+.. .......|.
T Consensus 486 ~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~Lq 565 (716)
T KOG4593|consen 486 SREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQ 565 (716)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHH
Confidence 34444456666666 777888888888888777754432 245667788
Q ss_pred HHHHHHHHHHHhhcCcc-hhhhHHHhc
Q 026806 167 DENEAIVEELKLRHRAD-AISYLEALM 192 (233)
Q Consensus 167 ~EN~~LR~el~~L~g~~-~vs~L~~~~ 192 (233)
+||..||..+..+.|.- .+.+....+
T Consensus 566 aE~~~lk~~l~~le~~~~~~~d~~i~~ 592 (716)
T KOG4593|consen 566 AELERLKERLTALEGDKMQFRDGEIAV 592 (716)
T ss_pred HHHHHHHHHHHHHhccCCcccchhhHH
Confidence 88888888888876532 344444444
No 434
>PRK14153 heat shock protein GrpE; Provisional
Probab=23.47 E-value=2.7e+02 Score=24.70 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
++.+++|..++-.+.++...++++...=.
T Consensus 46 ~~e~~elkd~~lR~~AEfeN~rKR~~kE~ 74 (194)
T PRK14153 46 REEIESLKEQLFRLAAEFDNFRKRTAREM 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554433
No 435
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=23.39 E-value=4.4e+02 Score=22.66 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 125 RSRMRKQEEFKKLQKAVEE-LKA-------ESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 125 RSR~RKq~~leeLe~~V~~-L~~-------EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+-|.+|.-.++-+..++.. ++. ++..|..--..|...-.....=|..|+.+|-.|.
T Consensus 117 kKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~ 180 (216)
T cd07599 117 KKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLL 180 (216)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3466777777888887877 443 3444555445555555666677899999988864
No 436
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=23.34 E-value=6.7e+02 Score=24.38 Aligned_cols=58 Identities=24% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 122 SARRSRMRKQEEFKKLQKAVEELKAESAV----------LKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 122 SARRSR~RKq~~leeLe~~V~~L~~EN~~----------L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+.-..|+.-+..++.|..+.+.+..+... |..+...|.++...++.+-..|..++..+
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 437
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.32 E-value=3.5e+02 Score=25.89 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=8.1
Q ss_pred ccccCCCCCCCCC
Q 026806 66 VCHSNTTNLASRD 78 (233)
Q Consensus 66 ~c~g~~~~l~~~~ 78 (233)
.|+-||.+-||-+
T Consensus 44 ~C~dNHGikPP~P 56 (305)
T PF15290_consen 44 SCGDNHGIKPPNP 56 (305)
T ss_pred ecccCCCCCCCCH
Confidence 4777776666543
No 438
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=23.27 E-value=5.1e+02 Score=22.84 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
..+..|+.++..+...-..+..++.........+..+...|..++..|
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~l 48 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLL 48 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=23.20 E-value=5.3e+02 Score=25.84 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 139 KAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.-+..|+.|..+|..+|..-.++....+.+-..|..+|.+-.
T Consensus 139 Dlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk 180 (561)
T KOG1103|consen 139 DLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEK 180 (561)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888988888888888888888888887777653
No 440
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=23.14 E-value=4.7e+02 Score=23.58 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
..|+..+..++.+...+...+..|......|...-..|+.+...
T Consensus 95 ~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 95 QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444333
No 441
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=22.92 E-value=3.8e+02 Score=21.05 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDE 168 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~E 168 (233)
..|+.|..-+..|+..|..|..++..|.+.......|
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e 69 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLE 69 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888887766665544
No 442
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=22.84 E-value=4.3e+02 Score=22.54 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAI 172 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~L 172 (233)
+++|-.++..|++.-.....++...+..+..|..|-..|
T Consensus 8 iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL 46 (134)
T PF15233_consen 8 IEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSL 46 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554444444444444444
No 443
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.80 E-value=6.3e+02 Score=23.59 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 149 AVLKDELLSLSAKYGKLKDENEAIV 173 (233)
Q Consensus 149 ~~L~~el~~L~~~~~~L~~EN~~LR 173 (233)
..|..++..|...+.....+...|.
T Consensus 245 ~~l~~~l~~l~~~~~~~~~e~~~l~ 269 (344)
T PF12777_consen 245 AELEEKLAALQKEYEEAQKEKQELE 269 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 444
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.74 E-value=3.2e+02 Score=20.09 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLK 166 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~ 166 (233)
.++.++..-+..|..|..+|..|..+...+.
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555556555555555554443
No 445
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=22.68 E-value=2.5e+02 Score=29.91 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIV 173 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR 173 (233)
++.++..|+.|.-....+ -+..+..|+.||.+||
T Consensus 231 ~~e~i~~LQeE~l~tQ~k---YQreLErlEKENkeLr 264 (980)
T KOG0447|consen 231 DKEKIDQLQEELLHTQLK---YQRILERLEKENKELR 264 (980)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHH
Confidence 444455554443222222 2334556666777776
No 446
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=22.64 E-value=5.7e+02 Score=22.98 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.-.-++..+..-+..-..|...+...+.+-..+...-...+.+...|.
T Consensus 113 Qka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~ 160 (192)
T PF11180_consen 113 QKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALE 160 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555555555555554
No 447
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=22.58 E-value=6.6e+02 Score=23.73 Aligned_cols=60 Identities=23% Similarity=0.302 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 106 DGEELKLAKRRQSNRESARRSRMRKQEEF---------------KKLQKAVEELKAESAVLKDELLSLSAKYGKL 165 (233)
Q Consensus 106 Dere~KR~RRk~sNRESARRSR~RKq~~l---------------eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L 165 (233)
.|++.|-.-+.+--+.=-=++..|-|.-. ++|+.+++.|+.+-.+-.-.+.-|+.++..|
T Consensus 10 ~eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~Asl 84 (277)
T PF15030_consen 10 SEEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASL 84 (277)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHH
Confidence 34555444455444444444444444433 3444444444444444444444444444433
No 448
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=22.48 E-value=4.5e+02 Score=21.75 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 138 QKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 138 e~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
..++..|..........+..+......|...+..|+.+.
T Consensus 40 ~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~ 78 (136)
T PF04871_consen 40 EAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEA 78 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334443333333344455555555666666665443
No 449
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.44 E-value=1.1e+02 Score=27.52 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 026806 106 DGEELKLAKRRQSNRES-------ARRSRMRKQEEFKKLQKAVEE 143 (233)
Q Consensus 106 Dere~KR~RRk~sNRES-------ARRSR~RKq~~leeLe~~V~~ 143 (233)
|-.+.+-.--++.||+. +|+.-+|.-.|+-=+..+|..
T Consensus 127 dv~e~e~~Le~La~R~~gplvv~l~RepGkREsRymhLf~g~vd~ 171 (215)
T COG3132 127 DVAEVEHTLERLANREDGPLVVRLAREPGKRESRYMHLFSGEVDD 171 (215)
T ss_pred hHHHHHHHHHHHhcCCCCceeeecCCCCCcchhhhhhhhcchhhh
Confidence 44445555567778875 555556665666555544444
No 450
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=22.37 E-value=1.5e+02 Score=27.47 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~ 156 (233)
+.+..+..++..|+.||.+|+.-+.
T Consensus 83 ~~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 83 AELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3555666677777777777765554
No 451
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=22.31 E-value=5.9e+02 Score=23.72 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
.+.+|+.+++.++.+...+..++..+.
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 61 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADLE 61 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655555554433
No 452
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.22 E-value=1.1e+03 Score=26.42 Aligned_cols=38 Identities=5% Similarity=-0.026 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 143 ELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 143 ~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+-..|..|..++....++.+.+..+|.+.+.++..+.
T Consensus 262 ~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~ 299 (1109)
T PRK10929 262 AQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVR 299 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456889999999998888888888887666665553
No 453
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=22.12 E-value=81 Score=27.46 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=4.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026806 141 VEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 141 V~~L~~EN~~L~~el~~L~~~~ 162 (233)
-+.|+.++++|+.|+..|++++
T Consensus 26 KE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444
No 454
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=22.04 E-value=72 Score=26.84 Aligned_cols=38 Identities=11% Similarity=0.301 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 130 KQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKD 167 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~ 167 (233)
|+..-..+..++...+.+|-.+..++..|.+.+..|..
T Consensus 81 k~~re~~~~~e~e~~~~~~pkI~~QFaDLKR~La~VS~ 118 (133)
T PF06424_consen 81 KKRREAREKEEIEKYRKENPKIQQQFADLKRSLATVSE 118 (133)
T ss_pred cchhhhhhhhHHHhhhccCchHHHHHHHHHHHHccCCH
Confidence 33334445566667777777777777777766655543
No 455
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.00 E-value=8.7e+02 Score=26.84 Aligned_cols=8 Identities=13% Similarity=0.003 Sum_probs=3.2
Q ss_pred CCCCCCcc
Q 026806 73 NLASRDSA 80 (233)
Q Consensus 73 ~l~~~~~~ 80 (233)
.+|+.-++
T Consensus 266 ~lP~tlP~ 273 (1118)
T KOG1029|consen 266 PLPKTLPP 273 (1118)
T ss_pred CCCCCCCh
Confidence 34444443
No 456
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.95 E-value=4.7e+02 Score=26.60 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 143 ELKAESAVLKDELLSLSAKYGKLK 166 (233)
Q Consensus 143 ~L~~EN~~L~~el~~L~~~~~~L~ 166 (233)
..+.+...|+.++....+.+..|.
T Consensus 159 pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 159 PMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444444444444444444443
No 457
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.93 E-value=5.5e+02 Score=27.04 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHH
Q 026806 128 MRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEA 190 (233)
Q Consensus 128 ~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~ 190 (233)
.|-..--++++.+|..|+.+-..-..++..++++...+...-..|..++..+. +....|..
T Consensus 554 ~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~--d~Qe~L~~ 614 (717)
T PF10168_consen 554 EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAK--DKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
No 458
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.89 E-value=4.5e+02 Score=24.42 Aligned_cols=19 Identities=42% Similarity=0.422 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026806 138 QKAVEELKAESAVLKDELL 156 (233)
Q Consensus 138 e~~V~~L~~EN~~L~~el~ 156 (233)
++++..|.+|...|...+.
T Consensus 63 Q~~~~~L~~ev~~~~~~~~ 81 (247)
T COG3879 63 QKKVNTLAAEVEDLENKLD 81 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 459
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.81 E-value=8.4e+02 Score=24.67 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 113 AKRRQSNRESARRSRMRKQEEFKKLQKAVEELK---AESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 113 ~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~---~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..+....+..-.+.+......++.+..++..+. .+...+..++..++..+..+..++..|..++...+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~ 94 (475)
T PRK10361 24 SYQHAQQKAEQLAEREEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQ 94 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 460
>PRK14158 heat shock protein GrpE; Provisional
Probab=21.77 E-value=3.1e+02 Score=24.35 Aligned_cols=29 Identities=3% Similarity=-0.052 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
+++|+.++..|+....++..++.-++.+.
T Consensus 49 l~~le~e~~el~d~~lR~~AefeN~RkR~ 77 (194)
T PRK14158 49 LAAKEAEAAANWDKYLRERADLENYRKRV 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555545555544444433
No 461
>PLN02320 seryl-tRNA synthetase
Probab=21.68 E-value=2.3e+02 Score=28.65 Aligned_cols=6 Identities=17% Similarity=-0.086 Sum_probs=2.7
Q ss_pred cccchH
Q 026806 103 ITKDGE 108 (233)
Q Consensus 103 ~~~Der 108 (233)
+|.|-+
T Consensus 65 ~mlD~k 70 (502)
T PLN02320 65 AAIDFK 70 (502)
T ss_pred cccCHH
Confidence 345544
No 462
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=21.60 E-value=4.1e+02 Score=20.94 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.+.+...+...+..|..|...+..-+.-.......+..|+.+....
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~ 79 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEER 79 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777777777777766666666666666666655543
No 463
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=21.53 E-value=2.2e+02 Score=22.00 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 026806 167 DENEAIVEELK 177 (233)
Q Consensus 167 ~EN~~LR~el~ 177 (233)
.||..|+.+|.
T Consensus 7 eEn~~Lk~eiq 17 (76)
T PF07334_consen 7 EENARLKEEIQ 17 (76)
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 464
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=21.52 E-value=4.2e+02 Score=31.19 Aligned_cols=52 Identities=27% Similarity=0.309 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 126 SRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 126 SR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
.+.+.-..+.+|..++..|..+...|...+..|..++....+++..|+.+..
T Consensus 1237 e~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~ 1288 (1822)
T KOG4674|consen 1237 ENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEEND 1288 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554444444444444444444444444444333
No 465
>PRK10722 hypothetical protein; Provisional
Probab=21.41 E-value=3.5e+02 Score=25.24 Aligned_cols=8 Identities=13% Similarity=0.355 Sum_probs=4.1
Q ss_pred hhhHHHhc
Q 026806 185 ISYLEALM 192 (233)
Q Consensus 185 vs~L~~~~ 192 (233)
+.+++.+.
T Consensus 202 LTdIERqL 209 (247)
T PRK10722 202 LTDIERQL 209 (247)
T ss_pred HHHHHHHh
Confidence 44555555
No 466
>PRK02224 chromosome segregation protein; Provisional
Probab=21.39 E-value=9.3e+02 Score=24.98 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.7
Q ss_pred cccCcc
Q 026806 7 ICGNNN 12 (233)
Q Consensus 7 ~~~~~~ 12 (233)
.||.+|
T Consensus 456 ~C~r~~ 461 (880)
T PRK02224 456 ECGQPV 461 (880)
T ss_pred CCCCcC
Confidence 455443
No 467
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.19 E-value=3.2e+02 Score=21.04 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026806 137 LQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L 158 (233)
|+.++..|+.+-..+..++..+
T Consensus 99 l~~~~~~l~~~~~~~~~~~~~l 120 (129)
T cd00890 99 LEKQIEKLEKQLEKLQDQITEL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333
No 468
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.18 E-value=2.5e+02 Score=25.23 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 026806 159 SAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 159 ~~~~~~L~~EN~~LR~el~~ 178 (233)
++....|..|-...+.+|..
T Consensus 122 Qe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 122 QEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333443343333333333
No 469
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.18 E-value=3.3e+02 Score=26.38 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 115 RRQSNRESARRSRMRKQEE--FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDE 168 (233)
Q Consensus 115 Rk~sNRESARRSR~RKq~~--leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~E 168 (233)
|...|..|..--..++... .++|..++..|..+...|..++..+.+++..+...
T Consensus 50 ~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 50 QAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 470
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=21.16 E-value=8.7e+02 Score=24.59 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
....|..+|..|-.+-.+|..+.+.|..
T Consensus 145 Q~q~lqtrl~~l~~qr~ql~aq~qsl~a 172 (499)
T COG4372 145 QAQDLQTRLKTLAEQRRQLEAQAQSLQA 172 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333
No 471
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=21.11 E-value=2.7e+02 Score=26.90 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=15.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Q 026806 111 KLAKRRQSNRESARRSRMRKQEEF 134 (233)
Q Consensus 111 KR~RRk~sNRESARRSR~RKq~~l 134 (233)
++.|+.+++|-..-.-=+||..++
T Consensus 122 ~e~r~~lk~RI~rSEAFKRKllE~ 145 (323)
T PF08537_consen 122 REERRLLKDRILRSEAFKRKLLEK 145 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788876666656664444
No 472
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.07 E-value=4.4e+02 Score=21.11 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGK 164 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~ 164 (233)
.|+..+..|..+-..+..++..+......
T Consensus 105 ~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 105 ELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333333
No 473
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=20.88 E-value=7.5e+02 Score=23.73 Aligned_cols=70 Identities=23% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 108 EELKLAKRRQSNRESARRSRMRKQEEFKKLQK-------AVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 108 re~KR~RRk~sNRESARRSR~RKq~~leeLe~-------~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
+.+.+-.-++.+-+--++-|.-||-+|+-|++ +|+.-+.+-..|.+++..|.+.|..|+.-+..|--+|.
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
No 474
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=20.58 E-value=4.4e+02 Score=24.40 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 026806 156 LSLSAKYGKLKDENEAIVEELKLRHRA 182 (233)
Q Consensus 156 ~~L~~~~~~L~~EN~~LR~el~~L~g~ 182 (233)
..+.+....|..-|..||++|.-+..|
T Consensus 231 kk~~eei~fLk~tN~qLKaQLegI~ap 257 (259)
T KOG4001|consen 231 KKMKEEIEFLKETNRQLKAQLEGILAP 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 345667778888999999998876544
No 475
>PHA00728 hypothetical protein
Probab=20.45 E-value=1.4e+02 Score=25.36 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 139 KAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
.+|++|+.||..|+.++..|..-.
T Consensus 5 teveql~keneelkkkla~leal~ 28 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALM 28 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHH
Confidence 467788888888888877665443
No 476
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.42 E-value=4.2e+02 Score=20.58 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 151 LKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 151 L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
...+|..|...+..|..+...|...+..+.
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555666666666665543
No 477
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.39 E-value=5.3e+02 Score=24.91 Aligned_cols=60 Identities=32% Similarity=0.467 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhcCcchhhhHHHhc
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSA-------------KYGKLKDENEAIVEELKLRHRADAISYLEALM 192 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~-------------~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~ 192 (233)
.+.+..|..++..+..+...|...+..+.. .+..+...-..|..++..+. ..+..|...+
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~--~~~~~l~~~l 405 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELK--EELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
No 478
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.24 E-value=4.9e+02 Score=21.32 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 126 SRMRKQEEFKKLQKAVEELKAESAVLK-------DELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 126 SR~RKq~~leeLe~~V~~L~~EN~~L~-------~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
-|.++..+++.++..+...+.+...|. .++..|...+..++.+-..++.++..
T Consensus 111 ~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~ 170 (218)
T cd07596 111 DRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEE 170 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455444444444444442 24445555555554444444444443
No 479
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.24 E-value=4.4e+02 Score=21.10 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
..++..|..+...|+.+...|...+..|..
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~ 34 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQA 34 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655555555554433
No 480
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.09 E-value=9.1e+02 Score=27.19 Aligned_cols=82 Identities=29% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhh--
Q 026806 116 RQSNRESARRSRMRKQEEFKKLQKAVE-------ELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAIS-- 186 (233)
Q Consensus 116 k~sNRESARRSR~RKq~~leeLe~~V~-------~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs-- 186 (233)
++.-++.+..--..+-+++.+|+..+. .+-+++..|.+++..+...-..|+.|-..|+..++.+. +.|+
T Consensus 416 lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~--~dl~~~ 493 (1200)
T KOG0964|consen 416 LQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLE--EDLSRA 493 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q ss_pred --hHHHhcCCCCCCC
Q 026806 187 --YLEALMPHNLMNG 199 (233)
Q Consensus 187 --~L~~~~~~~~~~~ 199 (233)
.|...++.++-.|
T Consensus 494 ~~~L~~~~~r~v~nG 508 (1200)
T KOG0964|consen 494 EKNLRATMNRSVANG 508 (1200)
T ss_pred HHHHHHhccchhhhh
No 481
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.06 E-value=6.9e+02 Score=26.32 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhh
Q 026806 124 RRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAIS 186 (233)
Q Consensus 124 RRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs 186 (233)
..-+.+....+.+|+.+.+.|+..-..|..++..+.++...|...-..|...+..-.++-+.+
T Consensus 571 k~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~A 633 (717)
T PF10168_consen 571 KQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEA 633 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
No 482
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=20.04 E-value=3.6e+02 Score=27.43 Aligned_cols=51 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
+.....++.....++..-++|..++..+..+...+..+|..|+.....+.|
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~ 417 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRG 417 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
No 483
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=20.01 E-value=1.1e+03 Score=25.74 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 104 TKDGEELKLAKRRQSNRESARRSRMRKQEEFKK-----------------------LQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 104 ~~Dere~KR~RRk~sNRESARRSR~RKq~~lee-----------------------Le~~V~~L~~EN~~L~~el~~L~~ 160 (233)
+..-.|.=++++.+--|++|-.-|.|...++.+ --.+.+.|..+...+++++..+..
T Consensus 158 ~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~ 237 (916)
T KOG0249|consen 158 SGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRH 237 (916)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 026806 161 KYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 161 ~~~~L~~EN~~LR~el~~L~ 180 (233)
.-..|..++..||.++..|+
T Consensus 238 ~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 238 DKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Done!