Query 026806
Match_columns 233
No_of_seqs 146 out of 550
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 22:38:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 9.3E-15 3.2E-19 103.2 6.1 52 111-162 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.3 7.2E-12 2.5E-16 90.0 8.9 55 111-165 2-56 (63)
3 2dgc_A Protein (GCN4); basic d 99.2 1.1E-11 3.7E-16 89.6 6.6 50 114-163 12-61 (63)
4 1t2k_D Cyclic-AMP-dependent tr 99.2 5.4E-11 1.8E-15 84.6 8.7 59 111-176 1-59 (61)
5 1jnm_A Proto-oncogene C-JUN; B 99.2 6.3E-11 2.2E-15 84.6 7.5 52 111-162 1-52 (62)
6 1ci6_A Transcription factor AT 99.0 1.2E-09 4.1E-14 78.6 8.3 61 111-178 2-62 (63)
7 1gd2_E Transcription factor PA 98.9 3.2E-09 1.1E-13 78.4 8.2 62 112-173 9-70 (70)
8 1gu4_A CAAT/enhancer binding p 98.6 2.8E-07 9.7E-12 69.2 8.9 51 110-160 14-64 (78)
9 1hjb_A Ccaat/enhancer binding 98.6 2.9E-07 9.9E-12 70.5 9.0 69 106-181 10-78 (87)
10 3a5t_A Transcription factor MA 98.5 4.9E-09 1.7E-13 83.1 -3.0 48 105-152 31-78 (107)
11 2wt7_B Transcription factor MA 98.1 2E-05 6.9E-10 60.8 9.6 68 106-180 22-89 (90)
12 2oqq_A Transcription factor HY 96.6 0.0053 1.8E-07 41.3 6.1 40 131-177 2-41 (42)
13 1deb_A APC protein, adenomatou 95.8 0.04 1.4E-06 38.6 7.1 47 134-180 5-51 (54)
14 1skn_P DNA-binding domain of S 95.6 0.005 1.7E-07 47.6 2.2 32 108-139 59-90 (92)
15 2jee_A YIIU; FTSZ, septum, coi 95.3 0.085 2.9E-06 39.9 7.9 54 134-189 22-75 (81)
16 2w6a_A ARF GTPase-activating p 95.2 0.088 3E-06 38.0 7.4 41 134-174 22-62 (63)
17 3s9g_A Protein hexim1; cyclin 94.1 0.19 6.4E-06 39.5 7.5 49 132-180 37-92 (104)
18 3hnw_A Uncharacterized protein 92.9 0.69 2.4E-05 37.4 9.3 50 131-180 74-123 (138)
19 3vmx_A Voltage-gated hydrogen 91.8 0.76 2.6E-05 31.6 6.9 41 138-178 3-43 (48)
20 3m48_A General control protein 91.3 0.24 8.1E-06 31.8 3.7 28 134-161 2-29 (33)
21 3he5_A Synzip1; heterodimeric 91.0 1.1 3.7E-05 30.3 7.0 45 133-177 4-48 (49)
22 2oxj_A Hybrid alpha/beta pepti 90.5 0.44 1.5E-05 30.7 4.4 29 133-161 2-30 (34)
23 3a2a_A Voltage-gated hydrogen 90.2 0.8 2.7E-05 32.5 6.0 41 138-178 10-50 (58)
24 1kd8_B GABH BLL, GCN4 acid bas 89.2 0.71 2.4E-05 30.0 4.7 30 133-162 2-31 (36)
25 1go4_E MAD1 (mitotic arrest de 89.1 1.5 5.2E-05 34.1 7.4 26 133-158 13-38 (100)
26 3oja_B Anopheles plasmodium-re 87.5 5.2 0.00018 37.1 11.4 48 132-179 530-577 (597)
27 3c3f_A Alpha/beta peptide with 87.2 1 3.5E-05 29.0 4.4 29 133-161 2-30 (34)
28 3a7p_A Autophagy protein 16; c 86.9 11 0.00036 31.4 11.6 68 112-179 69-136 (152)
29 1kd8_A GABH AIV, GCN4 acid bas 86.8 0.85 2.9E-05 29.7 3.9 30 133-162 2-31 (36)
30 2c9l_Y EB1, zebra, BZLF1 trans 86.6 3.9 0.00013 29.1 7.6 54 115-189 5-58 (63)
31 3cvf_A Homer-3, homer protein 86.1 1.5 5.1E-05 32.8 5.6 48 133-180 7-54 (79)
32 3c3g_A Alpha/beta peptide with 86.0 1.3 4.4E-05 28.3 4.4 28 134-161 2-29 (33)
33 3mq7_A Bone marrow stromal ant 85.8 3.9 0.00013 32.9 8.2 41 139-179 71-111 (121)
34 3m91_A Proteasome-associated A 85.6 3.8 0.00013 28.2 7.0 38 133-170 10-47 (51)
35 3hnw_A Uncharacterized protein 85.6 6.5 0.00022 31.6 9.6 46 131-176 88-133 (138)
36 3cve_A Homer protein homolog 1 85.5 3.7 0.00013 30.2 7.4 46 135-180 3-48 (72)
37 1uo4_A General control protein 85.5 1.1 3.7E-05 28.9 3.9 29 133-161 2-30 (34)
38 2bni_A General control protein 85.4 1.1 3.7E-05 28.8 3.9 29 133-161 2-30 (34)
39 1t2k_D Cyclic-AMP-dependent tr 85.4 5.4 0.00019 27.5 7.9 35 154-190 23-57 (61)
40 3m91_A Proteasome-associated A 85.2 4.2 0.00015 28.0 7.1 42 138-179 8-49 (51)
41 2yy0_A C-MYC-binding protein; 84.6 1.9 6.4E-05 29.8 5.1 32 139-177 19-50 (53)
42 3m9b_A Proteasome-associated A 84.5 1.4 4.8E-05 39.3 5.6 41 132-172 54-94 (251)
43 2yy0_A C-MYC-binding protein; 84.4 1.9 6.5E-05 29.7 5.1 27 134-160 21-47 (53)
44 2jee_A YIIU; FTSZ, septum, coi 84.0 4.9 0.00017 30.2 7.6 47 133-179 7-53 (81)
45 2wq1_A General control protein 84.0 1.8 6.2E-05 27.6 4.4 28 134-161 2-29 (33)
46 3s9g_A Protein hexim1; cyclin 83.9 6.6 0.00023 30.8 8.5 30 131-160 64-93 (104)
47 2hy6_A General control protein 83.8 1.7 5.8E-05 27.9 4.2 29 133-161 2-30 (34)
48 2dfs_A Myosin-5A; myosin-V, in 82.8 8.6 0.00029 40.0 11.4 20 160-179 1023-1042(1080)
49 2oqq_A Transcription factor HY 82.6 2.3 7.8E-05 28.5 4.6 25 131-155 16-40 (42)
50 2wt7_B Transcription factor MA 82.3 4.4 0.00015 30.9 6.8 29 151-179 53-81 (90)
51 1fmh_A General control protein 82.2 2.5 8.7E-05 26.5 4.5 29 134-162 3-31 (33)
52 2kz5_A Transcription factor NF 82.0 0.12 4E-06 39.9 -2.0 24 108-131 63-86 (91)
53 3efg_A Protein SLYX homolog; x 81.9 4.1 0.00014 30.0 6.4 49 132-180 14-62 (78)
54 4etp_A Kinesin-like protein KA 81.6 5 0.00017 37.2 8.3 62 130-191 8-70 (403)
55 3u06_A Protein claret segregat 81.5 5.1 0.00018 37.3 8.4 51 132-182 10-60 (412)
56 1nkp_B MAX protein, MYC proto- 80.1 8.5 0.00029 27.8 7.5 32 150-181 51-82 (83)
57 2eqb_B RAB guanine nucleotide 79.8 10 0.00035 29.3 8.2 48 132-179 12-59 (97)
58 1t6f_A Geminin; coiled-coil, c 79.7 3.7 0.00013 26.7 4.8 29 145-173 6-34 (37)
59 4h22_A Leucine-rich repeat fli 79.4 9.6 0.00033 29.8 8.0 69 110-178 9-83 (103)
60 1nkp_B MAX protein, MYC proto- 78.9 2.9 0.0001 30.3 4.7 34 132-165 47-80 (83)
61 1p9i_A Cortexillin I/GCN4 hybr 78.6 3 0.0001 25.8 3.9 25 135-159 2-26 (31)
62 2w83_C C-JUN-amino-terminal ki 78.1 4 0.00014 30.5 5.2 55 136-192 6-67 (77)
63 2xdj_A Uncharacterized protein 77.4 10 0.00035 28.3 7.3 57 133-189 21-77 (83)
64 3a7o_A Autophagy protein 16; c 76.6 13 0.00044 27.6 7.5 49 132-180 25-73 (75)
65 1dip_A Delta-sleep-inducing pe 76.2 2.4 8.2E-05 31.7 3.5 42 147-192 16-57 (78)
66 3m9b_A Proteasome-associated A 75.6 3.1 0.00011 37.1 4.7 44 138-181 53-96 (251)
67 1nlw_A MAD protein, MAX dimeri 75.1 6.8 0.00023 28.7 5.8 33 131-163 46-78 (80)
68 2j5u_A MREC protein; bacterial 74.4 1.5 5.2E-05 38.2 2.4 35 144-178 24-61 (255)
69 1jnm_A Proto-oncogene C-JUN; B 74.3 4 0.00014 28.3 4.2 25 155-179 24-48 (62)
70 1gu4_A CAAT/enhancer binding p 74.2 6.7 0.00023 29.0 5.6 55 107-161 15-72 (78)
71 2oa5_A Hypothetical protein BQ 73.7 1.8 6.3E-05 34.3 2.5 24 133-156 9-32 (110)
72 2wt7_A Proto-oncogene protein 73.3 20 0.00069 24.8 9.3 26 155-180 25-50 (63)
73 1hjb_A Ccaat/enhancer binding 73.0 27 0.00093 26.2 8.8 35 131-165 42-76 (87)
74 2w83_C C-JUN-amino-terminal ki 72.9 26 0.0009 26.1 8.5 44 135-178 33-76 (77)
75 2r2v_A GCN4 leucine zipper; co 72.5 6.5 0.00022 25.2 4.4 29 133-161 2-30 (34)
76 1joc_A EEA1, early endosomal a 71.6 20 0.00068 28.0 8.1 46 132-177 11-56 (125)
77 1jcd_A Major outer membrane li 70.7 23 0.00079 24.4 7.7 39 133-171 5-43 (52)
78 1nkp_A C-MYC, MYC proto-oncoge 70.4 24 0.00083 26.0 7.9 32 150-181 56-87 (88)
79 3oja_B Anopheles plasmodium-re 69.6 30 0.001 32.0 10.1 36 158-195 549-584 (597)
80 1ci6_A Transcription factor AT 68.1 20 0.00069 25.0 6.7 25 134-158 32-56 (63)
81 2dfs_A Myosin-5A; myosin-V, in 68.0 18 0.00063 37.6 9.1 42 136-177 981-1022(1080)
82 2v71_A Nuclear distribution pr 67.9 20 0.00068 30.5 7.9 51 138-190 87-137 (189)
83 3trt_A Vimentin; cytoskeleton, 67.7 26 0.00088 24.7 7.4 55 116-173 22-76 (77)
84 1nkp_A C-MYC, MYC proto-oncoge 67.4 12 0.00043 27.6 5.8 34 132-165 52-85 (88)
85 2zxx_A Geminin; coiled-coil, c 67.4 11 0.00037 28.2 5.4 35 145-179 33-67 (79)
86 1a93_B MAX protein, coiled coi 67.1 11 0.00037 24.2 4.6 27 152-178 6-32 (34)
87 2v66_B Nuclear distribution pr 67.0 44 0.0015 26.2 9.4 36 139-174 35-70 (111)
88 3o0z_A RHO-associated protein 66.8 29 0.00099 29.2 8.5 42 136-177 38-79 (168)
89 1wlq_A Geminin; coiled-coil; 2 66.8 21 0.00072 26.9 6.9 34 145-178 37-70 (83)
90 3nmd_A CGMP dependent protein 66.5 33 0.0011 25.2 7.7 27 130-156 38-64 (72)
91 3oa7_A Head morphogenesis prot 66.5 21 0.00073 30.9 7.8 56 139-194 30-89 (206)
92 1gk6_A Vimentin; intermediate 66.5 17 0.00058 25.1 6.0 46 135-180 3-48 (59)
93 2v71_A Nuclear distribution pr 66.3 60 0.0021 27.6 12.4 38 134-171 90-127 (189)
94 2wuj_A Septum site-determining 66.1 6.4 0.00022 27.1 3.7 28 132-159 27-54 (57)
95 1dip_A Delta-sleep-inducing pe 66.0 6.7 0.00023 29.3 4.0 21 132-152 22-42 (78)
96 1am9_A Srebp-1A, protein (ster 66.0 10 0.00035 27.6 5.0 21 158-178 55-75 (82)
97 3q8t_A Beclin-1; autophagy, AT 64.1 38 0.0013 25.4 8.1 50 131-180 24-73 (96)
98 2xv5_A Lamin-A/C; structural p 63.9 39 0.0013 24.5 8.0 47 134-180 7-53 (74)
99 3s4r_A Vimentin; alpha-helix, 63.6 44 0.0015 25.0 8.6 23 157-179 60-82 (93)
100 1gd2_E Transcription factor PA 63.0 18 0.00062 26.1 5.8 29 134-162 38-66 (70)
101 1uii_A Geminin; human, DNA rep 62.9 44 0.0015 25.1 8.0 34 145-178 45-78 (83)
102 1p9i_A Cortexillin I/GCN4 hybr 62.4 10 0.00034 23.5 3.6 22 158-179 4-25 (31)
103 1fmh_B General control protein 62.0 15 0.00051 23.0 4.4 29 134-162 3-31 (33)
104 3mq7_A Bone marrow stromal ant 61.8 36 0.0012 27.3 7.7 45 135-179 60-104 (121)
105 4emc_A Monopolin complex subun 61.7 16 0.00055 31.4 6.1 43 133-175 14-56 (190)
106 1dh3_A Transcription factor CR 61.1 14 0.00047 25.3 4.6 28 153-180 22-49 (55)
107 2wvr_A Geminin; DNA replicatio 61.0 44 0.0015 29.0 8.7 34 146-179 115-148 (209)
108 2xdj_A Uncharacterized protein 60.3 37 0.0013 25.2 7.2 40 128-167 23-62 (83)
109 3a7p_A Autophagy protein 16; c 60.2 72 0.0025 26.4 9.9 17 136-152 72-88 (152)
110 1ik9_A DNA repair protein XRCC 59.9 28 0.00095 29.8 7.4 44 134-177 134-177 (213)
111 3u1c_A Tropomyosin alpha-1 cha 59.7 52 0.0018 24.7 8.1 35 134-168 25-59 (101)
112 1wt6_A Myotonin-protein kinase 59.3 43 0.0015 25.1 7.3 59 119-180 14-72 (81)
113 2ve7_C Kinetochore protein NUF 59.2 3.5 0.00012 36.0 1.6 59 110-168 119-184 (250)
114 1gk7_A Vimentin; intermediate 59.0 23 0.00078 22.9 5.1 27 152-178 12-38 (39)
115 2lw1_A ABC transporter ATP-bin 58.5 36 0.0012 24.9 6.8 51 130-180 20-76 (89)
116 3ra3_A P1C; coiled coil domain 57.6 7.1 0.00024 23.7 2.3 24 142-165 3-26 (28)
117 3i00_A HIP-I, huntingtin-inter 57.3 40 0.0014 26.6 7.4 46 127-179 35-80 (120)
118 1x8y_A Lamin A/C; structural p 56.9 55 0.0019 24.0 8.4 52 129-180 25-76 (86)
119 2fxo_A Myosin heavy chain, car 56.7 67 0.0023 24.9 9.1 48 133-180 63-110 (129)
120 3w03_C DNA repair protein XRCC 56.4 16 0.00053 31.1 5.1 26 134-159 154-179 (184)
121 2dgc_A Protein (GCN4); basic d 56.2 34 0.0012 23.9 6.1 26 154-179 31-56 (63)
122 1deb_A APC protein, adenomatou 55.3 21 0.0007 24.9 4.6 33 156-190 6-38 (54)
123 3cvf_A Homer-3, homer protein 54.7 63 0.0021 23.9 8.2 48 132-179 27-74 (79)
124 3he5_B Synzip2; heterodimeric 53.6 44 0.0015 22.7 6.0 16 140-155 11-26 (52)
125 4dzn_A Coiled-coil peptide CC- 53.1 38 0.0013 21.1 5.2 24 136-159 6-29 (33)
126 3cve_A Homer protein homolog 1 52.9 64 0.0022 23.5 8.2 48 132-179 21-68 (72)
127 4ani_A Protein GRPE; chaperone 51.4 55 0.0019 28.2 7.8 9 184-192 118-126 (213)
128 3qh9_A Liprin-beta-2; coiled-c 51.3 75 0.0026 23.8 7.5 26 151-176 52-77 (81)
129 1zme_C Proline utilization tra 51.3 14 0.0005 24.8 3.4 24 132-155 44-67 (70)
130 3efg_A Protein SLYX homolog; x 51.1 62 0.0021 23.5 7.0 46 135-180 10-55 (78)
131 3m48_A General control protein 51.0 15 0.00053 23.3 3.2 24 157-180 4-27 (33)
132 3ra3_B P2F; coiled coil domain 50.8 13 0.00045 22.5 2.7 17 143-159 4-20 (28)
133 3s4r_A Vimentin; alpha-helix, 50.6 75 0.0026 23.7 7.9 23 139-161 23-45 (93)
134 3o0z_A RHO-associated protein 48.9 1.2E+02 0.004 25.4 11.6 59 115-180 73-131 (168)
135 1nlw_A MAD protein, MAX dimeri 48.2 49 0.0017 24.0 6.1 28 151-178 52-79 (80)
136 3nmd_A CGMP dependent protein 48.1 36 0.0012 25.0 5.3 47 134-180 21-67 (72)
137 3i00_A HIP-I, huntingtin-inter 48.0 99 0.0034 24.3 9.3 23 133-155 16-38 (120)
138 3oja_A Leucine-rich immune mol 47.9 1.6E+02 0.0054 26.6 11.2 6 168-173 450-455 (487)
139 1deq_A Fibrinogen (alpha chain 47.2 50 0.0017 31.1 7.4 45 132-176 113-157 (390)
140 3ghg_A Fibrinogen alpha chain; 47.0 76 0.0026 31.2 8.8 46 132-177 110-155 (562)
141 3swf_A CGMP-gated cation chann 46.7 55 0.0019 24.1 6.1 42 135-179 3-44 (74)
142 2wuj_A Septum site-determining 46.5 22 0.00074 24.4 3.7 25 156-180 30-54 (57)
143 3swy_A Cyclic nucleotide-gated 46.4 64 0.0022 21.7 6.9 41 136-179 2-42 (46)
144 3w03_C DNA repair protein XRCC 46.3 47 0.0016 28.1 6.5 36 132-167 145-180 (184)
145 1a93_B MAX protein, coiled coi 45.9 34 0.0012 21.8 4.2 22 136-157 11-32 (34)
146 4h22_A Leucine-rich repeat fli 45.8 81 0.0028 24.6 7.2 42 137-178 35-76 (103)
147 2oto_A M protein; helical coil 45.4 1.1E+02 0.0036 24.3 8.2 32 134-165 52-83 (155)
148 3u59_A Tropomyosin beta chain; 44.6 95 0.0032 23.1 8.2 36 133-168 24-59 (101)
149 1gk4_A Vimentin; intermediate 44.1 89 0.003 22.6 9.6 54 127-180 21-74 (84)
150 2oa5_A Hypothetical protein BQ 44.0 17 0.00058 28.8 3.1 24 155-178 10-33 (110)
151 3htk_A Structural maintenance 43.9 69 0.0024 21.3 8.6 46 131-176 11-56 (60)
152 4etp_A Kinesin-like protein KA 43.5 49 0.0017 30.5 6.7 35 134-168 5-39 (403)
153 1go4_E MAD1 (mitotic arrest de 43.5 32 0.0011 26.6 4.6 31 148-178 14-44 (100)
154 1uix_A RHO-associated kinase; 43.2 94 0.0032 22.7 6.8 30 137-166 2-31 (71)
155 4ath_A MITF, microphthalmia-as 43.1 57 0.0019 24.4 5.8 29 132-160 49-77 (83)
156 3qwe_A GMIP, GEM-interacting p 42.5 1.3E+02 0.0044 26.8 9.1 97 121-222 133-248 (279)
157 2efr_A General control protein 41.8 1.4E+02 0.0049 24.4 9.9 52 125-176 98-149 (155)
158 3he5_B Synzip2; heterodimeric 41.7 80 0.0027 21.4 6.5 33 148-180 5-37 (52)
159 1s1c_X RHO-associated, coiled- 41.6 1E+02 0.0034 22.5 7.0 32 136-167 3-34 (71)
160 3tnu_B Keratin, type II cytosk 41.4 56 0.0019 25.3 5.8 23 135-157 46-68 (129)
161 2v66_B Nuclear distribution pr 40.9 1.3E+02 0.0044 23.5 9.3 46 134-179 37-82 (111)
162 3c3g_A Alpha/beta peptide with 40.9 30 0.001 22.0 3.3 24 157-180 4-27 (33)
163 3c3f_A Alpha/beta peptide with 40.2 31 0.001 22.1 3.3 23 157-179 5-27 (34)
164 3tnu_B Keratin, type II cytosk 39.6 1.3E+02 0.0044 23.2 9.6 49 132-180 75-123 (129)
165 1wt6_A Myotonin-protein kinase 39.4 1.2E+02 0.0041 22.7 7.7 35 132-166 38-72 (81)
166 4b4t_K 26S protease regulatory 39.2 58 0.002 30.3 6.5 46 136-181 46-91 (428)
167 1jcd_A Major outer membrane li 39.2 91 0.0031 21.3 6.8 23 134-156 13-35 (52)
168 3tnu_A Keratin, type I cytoske 38.7 1.3E+02 0.0046 23.2 9.6 50 131-180 76-125 (131)
169 3u06_A Protein claret segregat 37.8 50 0.0017 30.7 5.8 24 153-176 17-40 (412)
170 2zvf_A Alanyl-tRNA synthetase; 37.6 71 0.0024 25.0 6.0 27 136-162 29-55 (171)
171 4emc_A Monopolin complex subun 37.2 2E+02 0.0067 24.6 9.0 32 133-164 28-59 (190)
172 1kdx_B CREB; complex (transcri 37.1 15 0.00051 22.6 1.5 19 35-53 3-21 (28)
173 2ve7_A Kinetochore protein HEC 37.0 50 0.0017 29.4 5.6 32 138-169 184-215 (315)
174 2oxj_A Hybrid alpha/beta pepti 36.7 77 0.0026 20.2 4.8 23 157-179 5-27 (34)
175 4dzo_A Mitotic spindle assembl 36.6 77 0.0026 24.9 6.0 28 132-159 4-31 (123)
176 1zxa_A CGMP-dependent protein 36.5 74 0.0025 22.9 5.3 30 129-158 22-51 (67)
177 2zvf_A Alanyl-tRNA synthetase; 36.1 48 0.0016 26.0 4.8 31 149-179 28-58 (171)
178 2er8_A Regulatory protein Leu3 35.8 21 0.0007 24.3 2.2 21 132-152 49-69 (72)
179 1fmh_A General control protein 35.7 46 0.0016 20.8 3.5 23 157-179 5-27 (33)
180 4b4t_K 26S protease regulatory 35.5 75 0.0026 29.5 6.7 43 132-174 49-91 (428)
181 2oto_A M protein; helical coil 34.7 1.7E+02 0.0057 23.1 8.5 8 166-173 63-70 (155)
182 2ve7_C Kinetochore protein NUF 34.2 60 0.0021 28.1 5.5 36 130-165 139-174 (250)
183 2w6b_A RHO guanine nucleotide 33.9 93 0.0032 21.8 5.3 21 136-156 14-34 (56)
184 1uo4_A General control protein 33.8 45 0.0015 21.3 3.3 23 157-179 5-27 (34)
185 1hlo_A Protein (transcription 33.8 37 0.0013 24.2 3.4 20 132-151 57-76 (80)
186 1g6u_A Domain swapped dimer; d 33.7 1.1E+02 0.0036 20.5 6.6 9 170-178 37-45 (48)
187 3bbp_D GRIP and coiled-coil do 33.4 38 0.0013 24.9 3.3 9 168-176 51-59 (71)
188 2lz1_A Nuclear factor erythroi 33.3 0.96 3.3E-05 34.8 -5.4 23 109-131 64-86 (90)
189 2bni_A General control protein 33.3 42 0.0014 21.4 3.1 23 157-179 5-27 (34)
190 3iv1_A Tumor susceptibility ge 33.3 1.5E+02 0.005 22.0 8.9 48 132-179 25-72 (78)
191 2dq0_A Seryl-tRNA synthetase; 33.2 1.8E+02 0.0062 27.1 8.9 26 152-177 75-100 (455)
192 4gkw_A Spindle assembly abnorm 32.1 2.1E+02 0.0073 23.5 8.5 48 133-180 113-160 (167)
193 2akf_A Coronin-1A; coiled coil 31.8 95 0.0032 19.4 4.8 24 137-160 4-27 (32)
194 3he4_A Synzip6; heterodimeric 31.5 73 0.0025 21.9 4.3 32 135-166 20-51 (56)
195 3v86_A De novo design helix; c 31.4 70 0.0024 19.1 3.7 16 139-154 7-22 (27)
196 2ocy_A RAB guanine nucleotide 31.2 2.2E+02 0.0075 23.4 10.0 22 159-180 107-128 (154)
197 3qne_A Seryl-tRNA synthetase, 31.1 2E+02 0.0069 27.4 8.9 19 130-148 45-63 (485)
198 1uii_A Geminin; human, DNA rep 30.8 1.3E+02 0.0043 22.6 6.0 24 136-159 50-73 (83)
199 3a2a_A Voltage-gated hydrogen 30.6 1.4E+02 0.0048 21.0 6.0 26 135-160 21-46 (58)
200 3ol1_A Vimentin; structural ge 30.4 1.3E+02 0.0045 23.1 6.3 37 131-167 19-55 (119)
201 3he4_A Synzip6; heterodimeric 30.0 16 0.00055 25.2 0.8 30 158-189 22-51 (56)
202 2fic_A Bridging integrator 1; 29.2 1.9E+02 0.0065 23.8 7.6 63 114-179 147-209 (251)
203 2xv5_A Lamin-A/C; structural p 28.9 1.6E+02 0.0056 21.2 8.5 53 125-177 5-57 (74)
204 3vkg_A Dynein heavy chain, cyt 28.7 2.8E+02 0.0097 32.6 10.9 97 115-214 2018-2135(3245)
205 4ath_A MITF, microphthalmia-as 28.6 1.8E+02 0.0062 21.6 6.6 39 131-180 38-76 (83)
206 1tu3_F RAB GTPase binding effe 27.8 1.5E+02 0.0051 22.0 5.8 33 170-202 43-76 (79)
207 3e98_A GAF domain of unknown f 27.7 1.8E+02 0.006 25.0 7.3 15 146-160 96-110 (252)
208 3mud_A DNA repair protein XRCC 27.7 2.2E+02 0.0076 23.9 7.6 22 30-51 51-72 (175)
209 1lwu_C Fibrinogen gamma chain; 27.4 1.7E+02 0.0057 26.6 7.4 40 136-175 16-55 (323)
210 1ses_A Seryl-tRNA synthetase; 27.3 2.7E+02 0.0093 25.6 8.9 29 150-178 68-96 (421)
211 1hlo_A Protein (transcription 27.0 1.3E+02 0.0044 21.3 5.3 49 127-179 24-76 (80)
212 2c9l_Y EB1, zebra, BZLF1 trans 26.6 1.4E+02 0.0048 21.0 5.2 18 111-128 5-22 (63)
213 1am9_A Srebp-1A, protein (ster 26.4 1.8E+02 0.0061 20.8 8.5 25 132-156 50-74 (82)
214 3iox_A AGI/II, PA; alpha helix 26.3 2.1E+02 0.0073 27.7 8.1 31 134-164 36-66 (497)
215 1fxk_C Protein (prefoldin); ar 25.9 1.9E+02 0.0064 21.9 6.5 38 131-168 94-131 (133)
216 1gmj_A ATPase inhibitor; coile 25.5 2.1E+02 0.0073 21.4 9.2 9 119-127 24-32 (84)
217 3q0x_A Centriole protein; cent 25.5 1.9E+02 0.0063 25.2 7.0 49 112-166 164-212 (228)
218 4ati_A MITF, microphthalmia-as 25.5 62 0.0021 25.0 3.6 18 162-179 93-110 (118)
219 1wle_A Seryl-tRNA synthetase; 25.5 3.3E+02 0.011 25.8 9.4 16 164-179 120-135 (501)
220 2v4h_A NF-kappa-B essential mo 25.5 2.4E+02 0.0084 22.1 10.9 61 119-179 32-102 (110)
221 3thf_A Protein shroom; coiled- 25.4 2.1E+02 0.0071 24.5 7.1 30 127-156 14-43 (190)
222 4e61_A Protein BIM1; EB1-like 25.0 2.4E+02 0.0083 21.9 8.5 34 137-170 9-42 (106)
223 3he5_A Synzip1; heterodimeric 24.7 1.6E+02 0.0055 19.7 6.3 19 141-159 5-23 (49)
224 3q4f_C DNA repair protein XRCC 24.6 1.3E+02 0.0044 25.7 5.6 26 136-161 158-183 (186)
225 1lwu_C Fibrinogen gamma chain; 24.3 2E+02 0.0069 26.0 7.3 27 133-159 27-53 (323)
226 1g6u_A Domain swapped dimer; d 24.2 1.4E+02 0.0048 19.9 4.6 14 144-157 25-38 (48)
227 3vkg_A Dynein heavy chain, cyt 23.9 1.8E+02 0.0061 34.3 8.1 44 136-179 2025-2068(3245)
228 3uux_B Mitochondrial division 23.9 3.3E+02 0.011 24.0 8.3 50 131-180 176-225 (242)
229 2wg5_A General control protein 23.3 76 0.0026 24.1 3.7 36 158-193 12-48 (109)
230 3na7_A HP0958; flagellar bioge 23.1 3.4E+02 0.012 22.9 11.9 25 134-158 34-58 (256)
231 3mov_A Lamin-B1; LMNB1, B-type 23.1 2.4E+02 0.0081 21.1 9.7 49 132-180 37-85 (95)
232 1kd8_B GABH BLL, GCN4 acid bas 22.7 1.6E+02 0.0055 18.9 5.1 7 167-173 22-28 (36)
233 3viq_B Mating-type switching p 22.3 2.5E+02 0.0085 21.0 9.0 27 159-185 47-73 (85)
234 1ik9_A DNA repair protein XRCC 21.9 3.6E+02 0.012 22.8 8.2 34 130-163 137-170 (213)
235 2pnv_A Small conductance calci 21.6 1.4E+02 0.0048 19.7 4.2 25 136-160 13-37 (43)
236 3gp4_A Transcriptional regulat 21.5 2.6E+02 0.009 21.6 6.7 18 135-152 91-108 (142)
237 2wvr_A Geminin; DNA replicatio 21.4 2.9E+02 0.01 23.9 7.3 53 134-190 117-171 (209)
238 3ljm_A Coil Ser L9C; de novo d 21.4 1.5E+02 0.0052 18.2 4.5 25 134-158 3-27 (31)
239 1wle_A Seryl-tRNA synthetase; 21.3 3.7E+02 0.013 25.5 8.8 29 150-178 120-148 (501)
240 1wlq_A Geminin; coiled-coil; 2 21.0 2.7E+02 0.0091 20.9 7.0 18 134-151 47-64 (83)
241 3htk_A Structural maintenance 20.9 1.9E+02 0.0064 19.1 8.1 44 135-178 8-51 (60)
242 2q6q_A Spindle POLE BODY compo 20.8 2.5E+02 0.0087 20.5 7.9 52 136-189 7-58 (74)
243 2e7s_A RAB guanine nucleotide 20.5 2.1E+02 0.0073 23.0 6.0 47 133-179 33-79 (135)
244 3mtu_A Tropomyosin alpha-1 cha 20.5 1.9E+02 0.0066 20.6 5.2 44 133-176 17-60 (75)
245 3q0x_A Centriole protein; cent 20.1 4.3E+02 0.015 22.9 8.2 9 45-53 85-93 (228)
246 3plt_A Sphingolipid long chain 20.1 2.6E+02 0.0089 24.4 6.9 62 112-178 94-156 (234)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.53 E-value=9.3e-15 Score=103.18 Aligned_cols=52 Identities=38% Similarity=0.473 Sum_probs=48.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 111 KLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 111 KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
||.+||++||+||++||+||++|+++|+.+|..|+.+|..|..++..|.+.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999999887654
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.32 E-value=7.2e-12 Score=89.99 Aligned_cols=55 Identities=31% Similarity=0.420 Sum_probs=49.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 111 KLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKL 165 (233)
Q Consensus 111 KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L 165 (233)
||++|+++||+||++||.||++++.+|+.+|..|+.+|..|..+|..|...+..|
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998766555444
No 3
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.25 E-value=1.1e-11 Score=89.58 Aligned_cols=50 Identities=40% Similarity=0.545 Sum_probs=43.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 114 KRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYG 163 (233)
Q Consensus 114 RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~ 163 (233)
+++..||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|.+.+.
T Consensus 12 ~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 12 LKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344999999999999999999999999999999999999988876553
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.21 E-value=5.4e-11 Score=84.62 Aligned_cols=59 Identities=29% Similarity=0.345 Sum_probs=51.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 111 KLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 111 KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
||++|+++||++|++||.||++++++|+.+|..|+.+|..|..+|..|. .|+..|+..|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~-------~e~~~Lk~~l 59 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR-------NEVAQLKQLL 59 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999988765 4555555544
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.17 E-value=6.3e-11 Score=84.61 Aligned_cols=52 Identities=33% Similarity=0.429 Sum_probs=46.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 111 KLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 111 KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
|++||+..||+||++||.||++++++|+.+|..|+.+|..|..++..|..++
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999888765433
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.01 E-value=1.2e-09 Score=78.62 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=48.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 111 KLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 111 KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
|+.++++.||.+|+|+|.||++++++|+.++..|+.+|..|..+|..| ..|+..|+.-|.+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L-------~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSL-------AKEIQYLKDLIEE 62 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 688899999999999999999999999999999999999999888765 4677777766543
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.93 E-value=3.2e-09 Score=78.42 Aligned_cols=62 Identities=29% Similarity=0.321 Sum_probs=56.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 112 LAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIV 173 (233)
Q Consensus 112 R~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR 173 (233)
..||+..||.|+|..|.||.+|+.+|+.+|..|+..+..|..++..|...+..|..||..||
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35889999999999999999999999999999999999999999999999999999988765
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.57 E-value=2.8e-07 Score=69.23 Aligned_cols=51 Identities=29% Similarity=0.292 Sum_probs=45.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 110 LKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 110 ~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
..-..|+.+|.++|+|||.+++....+++.+|..|+.+|..|..+|..|..
T Consensus 14 ~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566888999999999999999999999999999999999998886553
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.57 E-value=2.9e-07 Score=70.49 Aligned_cols=69 Identities=25% Similarity=0.233 Sum_probs=55.4
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 106 DGEELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 106 Dere~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
|..+.+-..|+.+|.++|+|||.+++....+++.+|..|+.||..|+.+|.. |..|...|+.-+..+.+
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~-------L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ-------LSRELSTLRNLFKQLPE 78 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHC---
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCcH
Confidence 3333446667889999999999999999999999999999999999998886 45677777777776554
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.48 E-value=4.9e-09 Score=83.14 Aligned_cols=48 Identities=27% Similarity=0.334 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 105 KDGEELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLK 152 (233)
Q Consensus 105 ~Dere~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~ 152 (233)
.+..+.|..||.++||.+|+.||.||.+.+++|+.++..|..+...|.
T Consensus 31 ~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~ 78 (107)
T 3a5t_A 31 EEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLA 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTT
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999977777766665555
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.10 E-value=2e-05 Score=60.76 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 106 DGEELKLAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 106 Dere~KR~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+-...|..||.++||-.|+-||.||.....+|+.++..|..+...|..++..+. .|-..++..+..|.
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~-------~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA-------RERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Confidence 345678889999999999999999999999999988888877777776666554 55556666666554
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=96.64 E-value=0.0053 Score=41.33 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
++|+.+||.++..|+..|..|..++.. |..||.-||+-+.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervst-------Lq~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLST-------LQNENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHhc
Confidence 589999999999999999988887776 5589999998653
No 13
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=95.77 E-value=0.04 Score=38.64 Aligned_cols=47 Identities=36% Similarity=0.422 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+.|-.+|+.|+.||..|++++..=..++.+|+.|-.-+|.-+..|.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 57899999999999999999999999999999999999988877765
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.61 E-value=0.005 Score=47.63 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 026806 108 EELKLAKRRQSNRESARRSRMRKQEEFKKLQK 139 (233)
Q Consensus 108 re~KR~RRk~sNRESARRSR~RKq~~leeLe~ 139 (233)
...|..||+.+||.+|+++|.||....++|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 45678899999999999999999999888763
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.26 E-value=0.085 Score=39.86 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
+.-|+-+++.|+.+|..|..++..++.....|..||..|+.+...+. +.|..|-
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq--~Rl~~LL 75 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ--ERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 33456677788888888888888888888889999999999888876 5555554
No 16
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.18 E-value=0.088 Score=37.98 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVE 174 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~ 174 (233)
+.--+.+|.+|..-|..|..++..++..++.|.+||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 44567899999999999999999999999999999999983
No 17
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=94.13 E-value=0.19 Score=39.52 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKD-------ELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~-------el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+.+-+|+.+++.|+.+|..|+. +|..|...+..|..||..|+.+-....
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455788888888888877776 788888888888888888887766543
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.87 E-value=0.69 Score=37.41 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+...+.|+.+++.+..|...|+.++..++.++..+..++..|+.++..|.
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777766666666666665
No 19
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=91.77 E-value=0.76 Score=31.64 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 138 QKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 138 e~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
+.++..|+.-|..|..++..|...|..++.|+.+|+.-|..
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999887654
No 20
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=91.29 E-value=0.24 Score=31.76 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
|..||.+|+.|-.+|..|..++.+|+.-
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5678999999999999999988887653
No 21
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=91.02 E-value=1.1 Score=30.34 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
-+..|+.+|+.|+.||..|+.+.-.-.....-|+.|-.-||..+.
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 356799999999999999998887766677777777777776653
No 22
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=90.48 E-value=0.44 Score=30.69 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
+|..|+.+|+.|-.+|..|..++.+|+.-
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 57789999999999999999888877653
No 23
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=90.21 E-value=0.8 Score=32.52 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 138 QKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 138 e~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
+.++..|+..|-.|..+++.|...|...+.|+.+|..-|..
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999887765
No 24
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=89.20 E-value=0.71 Score=30.03 Aligned_cols=30 Identities=37% Similarity=0.441 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
+|..|+.+|+.|-.+|..|..++.+|+...
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 577899999999999999999888877544
No 25
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=89.11 E-value=1.5 Score=34.12 Aligned_cols=26 Identities=38% Similarity=0.431 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L 158 (233)
.+..|..+++.|+.||..|+.++..|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~L 38 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRML 38 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666555444
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.49 E-value=5.2 Score=37.12 Aligned_cols=48 Identities=27% Similarity=0.297 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+..+++..+...|+.+...|..+++..+++..++..||..+++++..+
T Consensus 530 ~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 530 TEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556666666666666667777777777777766664
No 27
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=87.19 E-value=1 Score=28.97 Aligned_cols=29 Identities=7% Similarity=0.161 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
+|..||.+|+.|-.+|..|..++.+|+.-
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 57789999999999999999888877654
No 28
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.87 E-value=11 Score=31.41 Aligned_cols=68 Identities=22% Similarity=0.108 Sum_probs=50.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 112 LAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 112 R~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
..+...+-+.+.++.-......+.+-..-+..|..|...|.-++..+..+...|..||..|-.+...-
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555666666788889999999999999999999999999998887666553
No 29
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=86.77 E-value=0.85 Score=29.67 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
+|..|+.+|+.|-.+|..|..++.+|+...
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 466789999999999999998888876544
No 30
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=86.62 E-value=3.9 Score=29.09 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=36.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 115 RRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 115 Rk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
.+-+||.++|++|.|=+..++.... | ...-.+||.+||.-+..+++.-+|.++-
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~-v--------------------aaaks~en~rlr~l~kqmcpsldvdsii 58 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYRE-V--------------------AAAKSSENDRLRLLLKQMCPSLDVDSII 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-H--------------------HHHHHHHHHHHHHHHHHHCTTCCHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H--------------------HHhhcccchHHHHHHHHhCCcccccccC
Confidence 3456999999999876665543322 1 1223468888988888888765666554
No 31
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=86.08 E-value=1.5 Score=32.82 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..+++..++..++.+|+.|..+|..|...+..-..+-..++.++..+.
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888889999999999988888888888888888877764
No 32
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=85.97 E-value=1.3 Score=28.31 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
|..||.+|+.|-.+|..|..++.+|+.-
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5678899999999999988888877654
No 33
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.85 E-value=3.9 Score=32.90 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 139 KAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.+|..|+.|+..|..+|+.+......|..+|..|..++..-
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 34777777777777888888888888888888888877663
No 34
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=85.59 E-value=3.8 Score=28.24 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENE 170 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~ 170 (233)
.+.+|..++..|...|..|...+...+.++..|..+-.
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777777777666666655555544433
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.57 E-value=6.5 Score=31.63 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
..++..|..++..++-++..+..++..|.++...|..++..|..++
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444433
No 36
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=85.51 E-value=3.7 Score=30.19 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.++..++..++.+|+.|..+|..|...+..-..+-..++.++..+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888888888888888888888888877764
No 37
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=85.50 E-value=1.1 Score=28.86 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
+|..||.+|+.|-.+|..|..++.+|+.-
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46678999999999999999888887653
No 38
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=85.44 E-value=1.1 Score=28.84 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
+|..||.+|+.|-.+|..|..++.+|+.-
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 56788999999999999998888877643
No 39
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=85.38 E-value=5.4 Score=27.47 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHH
Q 026806 154 ELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEA 190 (233)
Q Consensus 154 el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~ 190 (233)
.+..|......|..+|..|+.++..|. ..+..|..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~--~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLR--NEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 455556666666666776666666665 44555543
No 40
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=85.15 E-value=4.2 Score=27.98 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 138 QKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 138 e~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+.++..|+.++..|..++..|.+-+.....+=..|+.+|..|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777888888888888888888888888888888887765
No 41
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.60 E-value=1.9 Score=29.77 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 139 KAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
..|+.|+.||..|+.++.. |..++..|+.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~-------L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEA-------IVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 4455555555555555544 4455666665554
No 42
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=84.51 E-value=1.4 Score=39.26 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAI 172 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~L 172 (233)
..+.+|+.++..|...|..|...+..+++++..|..|+..|
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777777777766666655555444444443
No 43
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.44 E-value=1.9 Score=29.72 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
++.|..+++.|+.++..|..++..|..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 44
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.00 E-value=4.9 Score=30.20 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
-++.|+.+|..+-....-|..++..|.++...|..+|..++.....|
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L 53 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREEL 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 35667777777777777777777777777777777777755544443
No 45
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=83.96 E-value=1.8 Score=27.62 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
|..||.+|+.|-.+|..|..++.+|+.-
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5678999999999999999888877653
No 46
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=83.86 E-value=6.6 Score=30.76 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
-..+.+|+.+|..|+.||+.|+.+.....+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467889999999999999999988776543
No 47
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=83.84 E-value=1.7 Score=27.95 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
+|..|+.+|+.|-.+|..|..++.+|+.-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46678999999999999999888887654
No 48
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.84 E-value=8.6 Score=40.04 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026806 160 AKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 160 ~~~~~L~~EN~~LR~el~~L 179 (233)
++...|..||..|++++.+|
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555554
No 49
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=82.57 E-value=2.3 Score=28.53 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDEL 155 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el 155 (233)
.....||+.+|..|+.||..|++-+
T Consensus 16 e~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3456788889999999998888654
No 50
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=82.28 E-value=4.4 Score=30.93 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 151 LKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 151 L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
|..++..|..+...|..||..+..++..+
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444556666666665554
No 51
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=82.19 E-value=2.5 Score=26.50 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
+..|+.+|++.+++|-+|..++..|...|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 45788888888888888888888776554
No 52
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=82.04 E-value=0.12 Score=39.91 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 026806 108 EELKLAKRRQSNRESARRSRMRKQ 131 (233)
Q Consensus 108 re~KR~RRk~sNRESARRSR~RKq 131 (233)
.-.|..||+.+||.+|+++|+||.
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345678999999999999999985
No 53
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=81.91 E-value=4.1 Score=29.96 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+++.+||.+++-++.-...|...|..-...+..|..+...|..++..+.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999999999888888888888888888888765
No 54
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.58 E-value=5 Score=37.17 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hhhhHHHh
Q 026806 130 KQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRAD-AISYLEAL 191 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~-~vs~L~~~ 191 (233)
.++++.+|+.++..|+.+...+..++..+.+++...+.+-..|-.++.++.|.= ++-.+++.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~ 70 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPA 70 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 457788888888999999999999999999999999999999999999987733 33344443
No 55
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=81.53 E-value=5.1 Score=37.34 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRA 182 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~ 182 (233)
+++.+|..++..|+.++..+..++..+.+++...+.+...|-.++.++.|.
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 578888899999999999999999999999999999999999999999873
No 56
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=80.05 E-value=8.5 Score=27.75 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 150 VLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 150 ~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
.|..++..|..+...|..+|..|+.+|..|.|
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555555566667788888888887764
No 57
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.81 E-value=10 Score=29.30 Aligned_cols=48 Identities=15% Similarity=0.307 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
..+..|+.++.....+...|..++..-......++.++..|..+|.+|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555554
No 58
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=79.67 E-value=3.7 Score=26.72 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 145 KAESAVLKDELLSLSAKYGKLKDENEAIV 173 (233)
Q Consensus 145 ~~EN~~L~~el~~L~~~~~~L~~EN~~LR 173 (233)
-.||.+|..+|..-.+++..|..||..|.
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 36899999999999999999999998885
No 59
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=79.39 E-value=9.6 Score=29.84 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=45.5
Q ss_pred HHHHHHHHhh-----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 110 LKLAKRRQSN-----RESARRSRMRK-QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 110 ~KR~RRk~sN-----RESARRSR~RK-q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
+|-++=|++| -.+|-..-.-- +-.+++++..+..|+.++....+++..+...+..|..+-..|+.+|..
T Consensus 9 EKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 9 EKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667765 23333222211 346777777888888888888888888887777777777777777765
No 60
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=78.90 E-value=2.9 Score=30.27 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKL 165 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L 165 (233)
.|+..|+.++..|+.+...|..++..|..++..|
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777777777777777777777777776665543
No 61
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=78.56 E-value=3 Score=25.85 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
+.|..-++.|++||.+|+.++..|.
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666555443
No 62
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=78.12 E-value=4 Score=30.54 Aligned_cols=55 Identities=27% Similarity=0.222 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhc
Q 026806 136 KLQKAVEELKAESAVLKDELL-------SLSAKYGKLKDENEAIVEELKLRHRADAISYLEALM 192 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~-------~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~ 192 (233)
.+-.+|+.|-.||.+|...-. .|..+...|..|+..|+.++..+. .+...|..-+
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~--~~~~r~~~ri 67 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVK--QAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 455677777777777765433 456777888888888888888775 4455555433
No 63
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=77.38 E-value=10 Score=28.27 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
-+-+|..++..|+.|...|+-.++.+..++..+......+=..|...-....++.|.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~~~~~~~~ 77 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGGAAAQLE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 345678888888888888888888888777777777777766665544333333333
No 64
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=76.56 E-value=13 Score=27.55 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+++.+=+.++..|+....-=.+-.++|...+-.+.-||..|..++..+.
T Consensus 25 ~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 25 KELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 4455555666666666555556677888888899999999999998764
No 65
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=76.25 E-value=2.4 Score=31.70 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhc
Q 026806 147 ESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEALM 192 (233)
Q Consensus 147 EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~ 192 (233)
|...|+.+|..|.++...|+.||..||. +..|+-++.|+..+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~----~aspEql~q~q~~l 57 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT----LASPEQLEKFQSRL 57 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSSSCSCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHhcc
Confidence 3445667777777777788899988875 45567777777666
No 66
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=75.59 E-value=3.1 Score=37.09 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 138 QKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 138 e~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
+.++..|+.++..|..++..|.+.+..+..|...|+.++..|.-
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66788999999999999999999999999999999999999865
No 67
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=75.10 E-value=6.8 Score=28.69 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYG 163 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~ 163 (233)
..|+..|+.+...|..+...|+.++..|..++.
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367777777777777777777666555554443
No 68
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=74.38 E-value=1.5 Score=38.20 Aligned_cols=35 Identities=31% Similarity=0.446 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 026806 144 LKAESAVLKDELLSLS---AKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 144 L~~EN~~L~~el~~L~---~~~~~L~~EN~~LR~el~~ 178 (233)
|..||..|++++..|. .++..+..||.+||..|..
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDI 61 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444444333 3556778899999887664
No 69
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.28 E-value=4 Score=28.29 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 155 LLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 155 l~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+..|......|..+|..|+.++..|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 70
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=74.23 E-value=6.7 Score=28.99 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 107 GEELKLAKRRQSNRESARRSRMR---KQEEFKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 107 ere~KR~RRk~sNRESARRSR~R---Kq~~leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
+--.||.|=-++=|.|-...|+| -+..+.+|+.+-..|+.+...|..++..|...
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444344444343333333 35567778888888888888888888777643
No 71
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=73.69 E-value=1.8 Score=34.31 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~ 156 (233)
-+++|..++..|+-||..|++++.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367888888888887777777775
No 72
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=73.34 E-value=20 Score=24.83 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 155 LLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 155 l~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+..|......|..+|..|+.++..|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555443
No 73
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=73.02 E-value=27 Score=26.20 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKL 165 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L 165 (233)
+.++.+|+.+-..|+.+...|..++..|...+..+
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45566777777777777777777777666555543
No 74
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=72.90 E-value=26 Score=26.10 Aligned_cols=44 Identities=34% Similarity=0.450 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
++|-.+|..|..|+..|+.++..+.+-..++...+..|..++..
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777888888888888888888887777777777777766653
No 75
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=72.48 E-value=6.5 Score=25.21 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
+|..|+.+|+.|-.++..|..++.+|++-
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46678889999998888888888877654
No 76
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=71.56 E-value=20 Score=27.97 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
+.+-..+.+|+.|+.++..|+..+.........+..+|..|.....
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~ 56 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHT 56 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 4455666678888888888888887777667777777777665433
No 77
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=70.69 E-value=23 Score=24.37 Aligned_cols=39 Identities=8% Similarity=0.085 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEA 171 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~ 171 (233)
.+++|..+|..|..+...|...+..|+........|=.+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~R 43 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777766666666555544444333
No 78
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=70.39 E-value=24 Score=26.03 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 150 VLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 150 ~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
.|..+...+......|..+|..|+.+|..|.|
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444555555677888889988888765
No 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.63 E-value=30 Score=32.01 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHHhcCCC
Q 026806 158 LSAKYGKLKDENEAIVEELKLRHRADAISYLEALMPHN 195 (233)
Q Consensus 158 L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~~~~~~ 195 (233)
+..++......-.+|++++..+. ..+..|...+++|
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~--~~~~~l~~~~~~~ 584 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKR--QKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHTTC--
T ss_pred HHHHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHhcCC
Confidence 33333333333334444444432 3455555555444
No 80
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.12 E-value=20 Score=24.97 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L 158 (233)
+++|+.+...|+.+...|..++..|
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 81
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=67.99 E-value=18 Score=37.58 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
.++.+|..|+.+...|..++..+..+...++.++..|+.+|.
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~ 1022 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555554444333
No 82
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=67.91 E-value=20 Score=30.54 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHH
Q 026806 138 QKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLEA 190 (233)
Q Consensus 138 e~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~ 190 (233)
...+..|+.+...|+.....|...+..|+..|..|......+. .++.++..
T Consensus 87 ~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~--~SleD~e~ 137 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI--MSLEDFEQ 137 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--hhHHHHHH
Confidence 3346666666666666666666666666677766655555443 34444443
No 83
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=67.72 E-value=26 Score=24.67 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=37.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 116 RQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIV 173 (233)
Q Consensus 116 k~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR 173 (233)
..+||+-|-.-= +..+++|...+..-..+....+.+|..|+..++.|..|-..||
T Consensus 22 a~knr~EaE~~y---~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 22 AAKNLQEAEEWY---KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445665554322 2346678888877777777778888888888877777766654
No 84
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=67.44 E-value=12 Score=27.63 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKL 165 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L 165 (233)
.|+..|+.+...|..+...|..+...|..++..|
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777776666666666666666655544
No 85
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=67.37 E-value=11 Score=28.21 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 145 KAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 145 ~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
-.||..|..+|..+...+..|..||..|+.-+...
T Consensus 33 L~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888888888887665554
No 86
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=67.09 E-value=11 Score=24.17 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 152 KDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 152 ~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
++++...++....|..+|..|..++..
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 344444445555555666666666544
No 87
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=66.96 E-value=44 Score=26.21 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 139 KAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVE 174 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~ 174 (233)
..+..|+.+...|+.....|...+..|+..|..|..
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 334444444444444445555555555555555533
No 88
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=66.79 E-value=29 Score=29.16 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
||...+..++..+..|...+..|......|..|...|.+.|.
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~ 79 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILE 79 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555554444443
No 89
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=66.77 E-value=21 Score=26.94 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 145 KAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 145 ~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
-.||..|...|..+......|..||..|+.-...
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888888888888765544
No 90
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.49 E-value=33 Score=25.20 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 130 KQEEFKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN~~L~~el~ 156 (233)
|.+.+.+|+.++.....+.+.|+.++.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544443
No 91
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=66.49 E-value=21 Score=30.93 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch----hhhHHHhcCC
Q 026806 139 KAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADA----ISYLEALMPH 194 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~----vs~L~~~~~~ 194 (233)
+-+.+|+++-.....+...|+..+..+.+||..|+..+..|.|..+ ...+.+..++
T Consensus 30 ~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~ks~p~ 89 (206)
T 3oa7_A 30 EALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQSRPD 89 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhhcCcc
Confidence 3455778888888889999999999999999999999999999543 4577766643
No 92
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=66.46 E-value=17 Score=25.08 Aligned_cols=46 Identities=28% Similarity=0.328 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..+...+..|+.+...++.++....+.|..|..=-..|-.+++..+
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4566677777777777777777777777777777777777777654
No 93
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=66.33 E-value=60 Score=27.55 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEA 171 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~ 171 (233)
+..|+.++..|+..+..|...|..|......|+.....
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~ 127 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 127 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44555555555555555555554444444444333333
No 94
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=66.08 E-value=6.4 Score=27.09 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
+.++.+...++.|..+|..|+.++..|.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666665555544
No 95
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=66.02 E-value=6.7 Score=29.30 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLK 152 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~ 152 (233)
+++.||+.++.+|+.||.-|+
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666555
No 96
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=66.00 E-value=10 Score=27.61 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026806 158 LSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 158 L~~~~~~L~~EN~~LR~el~~ 178 (233)
|+.+...|..||..|+..+..
T Consensus 55 Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 55 LQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555555554443
No 97
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=64.14 E-value=38 Score=25.45 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+.+.+|+.+-+.|..+...|..+...|...-.....+=+.++.++..+.
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~ 73 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELD 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555554444555555555555443
No 98
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=63.85 E-value=39 Score=24.51 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+.+...+..|+.+...++.++......|..|..=-..|-.+|+..+
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666677777666667777776654
No 99
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=63.55 E-value=44 Score=24.98 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026806 157 SLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 157 ~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.|+.++..+..||..|..++..+
T Consensus 60 ~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 60 ELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 100
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=63.00 E-value=18 Score=26.12 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
+.+|+.....|..+|..|+..|..|..++
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555554443
No 101
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=62.91 E-value=44 Score=25.14 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 145 KAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 145 ~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
-.||..|..+|..|.+....+..+|..|+.-+..
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888888888887765544
No 102
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=62.40 E-value=10 Score=23.49 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026806 158 LSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 158 L~~~~~~L~~EN~~LR~el~~L 179 (233)
|...+..|++||..|++++.+|
T Consensus 4 lnallasleaenkqlkakveel 25 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999998886
No 103
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=61.98 E-value=15 Score=22.98 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
+..|..+|..|.+.|-.-+.+++.|+.+|
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45677788888888888777777777665
No 104
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=61.76 E-value=36 Score=27.30 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+.|+.+..+-+...+.|..+|..|.+++..+..|-.+||.+...+
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 344444444455566677777777777777777777777666554
No 105
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=61.73 E-value=16 Score=31.36 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
+++.-...|..|..||..|..++.....+...|..+-..|+.+
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444455555555555555554444444444443333333
No 106
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=61.10 E-value=14 Score=25.29 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 153 DELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 153 ~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.-+..|..+...|..||..|+.++..|.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677778889999998888764
No 107
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=61.02 E-value=44 Score=29.05 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 146 AESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 146 ~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.||..|..+|..|.+....|..||..|+.-+..+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777776655554
No 108
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=60.29 E-value=37 Score=25.17 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 128 MRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKD 167 (233)
Q Consensus 128 ~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~ 167 (233)
.-=+..++.|..+|..|+-.+..+..++..|.++-..+..
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555554444443
No 109
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=60.21 E-value=72 Score=26.38 Aligned_cols=17 Identities=35% Similarity=0.321 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLK 152 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~ 152 (233)
.|+.++..|+.+...|.
T Consensus 72 ~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 110
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=59.86 E-value=28 Score=29.81 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
+.+|+.++..|..+|..|..++..|..++..+..+-..+..+|-
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~ 177 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLY 177 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777777777777777777777776666665555443
No 111
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=59.67 E-value=52 Score=24.73 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDE 168 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~E 168 (233)
++.++.++..++..+..+-.+|..|+.++..++.+
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~e 59 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDS 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333333
No 112
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.29 E-value=43 Score=25.15 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 119 NRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 119 NRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
|-.||=.+=.+-|+ -+..++...+..|..+..++.....++..|..|-..|+.++.+|+
T Consensus 14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566555544443 344566778888888888888888888888888888888888864
No 113
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=59.20 E-value=3.5 Score=36.03 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=30.0
Q ss_pred HHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 110 LKLAKRRQSN-------RESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDE 168 (233)
Q Consensus 110 ~KR~RRk~sN-------RESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~E 168 (233)
.+|.+|.+|= ||...---.....+.+++..++++|..+|+.+..+|..|+.+..+.+.+
T Consensus 119 ~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te 184 (250)
T 2ve7_C 119 AKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTV 184 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4577777553 4444444445556666777777777777777777777766665544443
No 114
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=58.96 E-value=23 Score=22.90 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 152 KDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 152 ~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
-.++..-.++...|+.+|..|..++..
T Consensus 12 NdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 12 NDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445666777788777777653
No 115
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=58.49 E-value=36 Score=24.86 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhc
Q 026806 130 KQEEFKKLQKAVEELKAESAVLKDELLSL------SAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN~~L~~el~~L------~~~~~~L~~EN~~LR~el~~L~ 180 (233)
-|..++.|+.+++.|+.+...|..++..- -..+..+..+-..|..+|..+.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999988888531 2445566666666666666543
No 116
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=57.63 E-value=7.1 Score=23.68 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 142 EELKAESAVLKDELLSLSAKYGKL 165 (233)
Q Consensus 142 ~~L~~EN~~L~~el~~L~~~~~~L 165 (233)
..|+.||..|..++..|.++...|
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 356667777776666666555443
No 117
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=57.27 E-value=40 Score=26.56 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 127 RMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 127 R~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
...-+.++..|..+|..|+++...-+. ....+..||..||.++..+
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~-------~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQH-------LRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666555443 3455667888888888875
No 118
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=56.89 E-value=55 Score=23.96 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
|-...++.+...+..|+.+...++.++....+.|..|..=-..|-.+|+.++
T Consensus 25 ~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 25 SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3345677778888888888888888888888888888887778888887764
No 119
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=56.73 E-value=67 Score=24.92 Aligned_cols=48 Identities=6% Similarity=0.169 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
-+.+.+..+..|......|-..|..+..++......|..|-..-..+.
T Consensus 63 ~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle 110 (129)
T 2fxo_A 63 NLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLE 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666666666666655555543
No 120
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=56.44 E-value=16 Score=31.13 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
+.+|..++..|+.+|.+|..+.....
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 121
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=56.20 E-value=34 Score=23.93 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 154 ELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 154 el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.+..|..+...|..+|..|+.++..|
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555554
No 122
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=55.27 E-value=21 Score=24.91 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHHH
Q 026806 156 LSLSAKYGKLKDENEAIVEELKLRHRADAISYLEA 190 (233)
Q Consensus 156 ~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~~ 190 (233)
..|.++...|..||..||.+|.+-. .-++.|+.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS--~~lskLE~ 38 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNS--NHLTKLET 38 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhH--HHHHHHHh
Confidence 4456677778889999999998854 44666663
No 123
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=54.66 E-value=63 Score=23.94 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
..+..|+.+++.-+.+-..++.++..+.+.+..--.|=..||..|+.|
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 345566666666666666677777777777776666777777766664
No 124
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.59 E-value=44 Score=22.66 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 026806 140 AVEELKAESAVLKDEL 155 (233)
Q Consensus 140 ~V~~L~~EN~~L~~el 155 (233)
+++.|+..|-+|.+.-
T Consensus 11 kiarlkkdnlqlerde 26 (52)
T 3he5_B 11 KIARLKKDNLQLERDE 26 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhH
Confidence 3444444444444333
No 125
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=53.13 E-value=38 Score=21.12 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
.|..+++.|+.|...|+-++..|.
T Consensus 6 alkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 126
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.85 E-value=64 Score=23.52 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
..+..|+.+++.-+.+-..++.++..+.+.+..--.|=..||..|+.|
T Consensus 21 ~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 21 GQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 445566666666666666677777777777777677777777776665
No 127
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=51.37 E-value=55 Score=28.17 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=4.3
Q ss_pred hhhhHHHhc
Q 026806 184 AISYLEALM 192 (233)
Q Consensus 184 ~vs~L~~~~ 192 (233)
.+.+|...+
T Consensus 118 VlDnlerAl 126 (213)
T 4ani_A 118 VLDNFERAL 126 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344555444
No 128
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=51.34 E-value=75 Score=23.83 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 151 LKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 151 L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
-+.+|..|++++..-.+|-..|..+|
T Consensus 52 TK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 52 TKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444444444444443
No 129
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=51.27 E-value=14 Score=24.82 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDEL 155 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el 155 (233)
.+++.|+.++..|+.....|...|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888887776644
No 130
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=51.12 E-value=62 Score=23.55 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+|+.++..|+....-+-..|..|......-..+-..|+.++..|.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888888888888888888888875
No 131
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=51.04 E-value=15 Score=23.34 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 157 SLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 157 ~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.|..+...|..+|..|..++..|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455566666777777777776653
No 132
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=50.83 E-value=13 Score=22.47 Aligned_cols=17 Identities=41% Similarity=0.560 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026806 143 ELKAESAVLKDELLSLS 159 (233)
Q Consensus 143 ~L~~EN~~L~~el~~L~ 159 (233)
.|.+.|..|+.++..|.
T Consensus 4 rlkqknarlkqeiaale 20 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHH
Confidence 34444444444444443
No 133
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=50.55 E-value=75 Score=23.66 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026806 139 KAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
.+|..|+++|..|..++..+..+
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666777777777666666543
No 134
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=48.87 E-value=1.2e+02 Score=25.41 Aligned_cols=59 Identities=25% Similarity=0.290 Sum_probs=36.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 115 RRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 115 Rk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.++.==+.=|+.|.+-.+.+.+|+.++..|..+...++ .....+..||..|-..+..+.
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k-------~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK-------HNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 45555556667777777777777776666665555544 444455666666666666654
No 135
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=48.19 E-value=49 Score=24.00 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 151 LKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 151 L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
|..+...+......|..+|..|+.+|..
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444455566677777776654
No 136
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.13 E-value=36 Score=24.95 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+.+|+..+.....|....-..|..|..++.....+...|+.+|-.++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444445566666666677777777777776654
No 137
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=48.05 E-value=99 Score=24.28 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDEL 155 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el 155 (233)
.++.|..+|..|+.+...|+.+-
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~ 38 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTES 38 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554443
No 138
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.90 E-value=1.6e+02 Score=26.61 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=2.1
Q ss_pred HHHHHH
Q 026806 168 ENEAIV 173 (233)
Q Consensus 168 EN~~LR 173 (233)
||.+|+
T Consensus 450 ~~~~~~ 455 (487)
T 3oja_A 450 ENARLK 455 (487)
T ss_dssp HHHHHH
T ss_pred Hhhhhh
Confidence 333333
No 139
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=47.22 E-value=50 Score=31.12 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
++.++|+.++..|+.....-...|..|+..+..+..+=++|...|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777666555577777777777777777777776
No 140
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.04 E-value=76 Score=31.19 Aligned_cols=46 Identities=11% Similarity=0.071 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
++.++|+.++..|+.+...-...|+.|+..+..+..+=++|...|.
T Consensus 110 E~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 110 RVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555445555555555555555555554443
No 141
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=46.69 E-value=55 Score=24.13 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
++|+.+|..|+.-...|.-++.+|..+|. +-...||++|..|
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~L 44 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKV 44 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 35666777777666666666666554443 3345566666554
No 142
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=46.53 E-value=22 Score=24.38 Aligned_cols=25 Identities=4% Similarity=0.096 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 156 LSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 156 ~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..+...+..|..||..|+.++..+.
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677778888888888887754
No 143
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=46.38 E-value=64 Score=21.66 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+||.+|..|+.-...|.-++.+|..++. +-...|+.++..|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~---ssq~KlKqRit~l 42 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN---ATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 5677777777766666666666554443 3345666666554
No 144
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=46.34 E-value=47 Score=28.15 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKD 167 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~ 167 (233)
+.++-|-..+..|+.+|..|.+++.+|+.+......
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888899999999999998888888777665443
No 145
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=45.86 E-value=34 Score=21.84 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLS 157 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~ 157 (233)
.....++.|+.+|..|..++..
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHHh
Confidence 3445555666666666665543
No 146
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=45.79 E-value=81 Score=24.58 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
|...++.++.....|.+++......+..+......|..++..
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~ 76 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAE 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444333333343444444333333
No 147
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=45.37 E-value=1.1e+02 Score=24.31 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKL 165 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L 165 (233)
..+|+.++..|+..|..|..++..+..++..+
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888888888888887777777444
No 148
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=44.58 E-value=95 Score=23.08 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDE 168 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~E 168 (233)
+.+.++.++..++..+..+-.++..|..++..+..+
T Consensus 24 ~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 24 RAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333333
No 149
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.14 E-value=89 Score=22.62 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 127 RMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 127 R~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..|-...+..+...+..|+.+...++.++......|..|..=-..|-.+|+.++
T Consensus 21 e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 21 EENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344455677888888888888888888888888888888888888888887764
No 150
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=43.95 E-value=17 Score=28.77 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 155 LLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 155 l~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
++.|..++.+|..||..||.++..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777888999999999865
No 151
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=43.88 E-value=69 Score=21.29 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
+..+.++..++..+..+-..+...+..+.+.+..+..+=..|+.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555544444444443
No 152
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=43.52 E-value=49 Score=30.50 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDE 168 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~E 168 (233)
++.|+.++..|+.+...|..++..+...+..+..+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666655555555555555544444433
No 153
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.52 E-value=32 Score=26.58 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 148 SAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 148 N~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
...|+.+|..|......|..++..|..+|..
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555
No 154
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=43.20 E-value=94 Score=22.66 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLK 166 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~ 166 (233)
|...|..|..|+..|..++..+.+.+..+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777766666666554
No 155
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=43.14 E-value=57 Score=24.44 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
+++.+.+.+...|+..|..|.-+++.|.-
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44556666667777777777766665543
No 156
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=42.48 E-value=1.3e+02 Score=26.79 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 121 ESARRSRMRKQEEFKKLQKAV----------------EELKA---ESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 121 ESARRSR~RKq~~leeLe~~V----------------~~L~~---EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
-++++++.+--..++|++.-. ..|+. .-..+..+++.....|...+.+-...|.+|....
T Consensus 133 ~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk- 211 (279)
T 3qwe_A 133 QALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAK- 211 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 345677777777777776211 11222 2233788899999999999999999999998764
Q ss_pred cchhhhHHHhcCCCCCCCCcchhhhhhhhhhhccccccccc
Q 026806 182 ADAISYLEALMPHNLMNGESYRREENLALFQSRYASSSSLN 222 (233)
Q Consensus 182 ~~~vs~L~~~~~~~~~~~~~~~~~~~l~~~q~~~~~~~~~~ 222 (233)
|..|..|+-++ ..+...-+..++--+|....-..+|-
T Consensus 212 ~~~v~~Lr~LI----~e~D~~lk~~t~~~fq~~~~~~~~~p 248 (279)
T 3qwe_A 212 QRIVSHVRKLV----FQGDEVLRRVTLSLFGLRGAQAERGP 248 (279)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888777 33333323344445555554444443
No 157
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=41.84 E-value=1.4e+02 Score=24.39 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 125 RSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 125 RSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
|+-.+-+..++.|+.++..-+..+..+..++......+..+.+.|-.|..++
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~ 149 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3333334444444444444444444444444443333333444444443333
No 158
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.71 E-value=80 Score=21.40 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 148 SAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 148 N~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
|.-|+.++.+|......|+..-+-|..-++.|+
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlr 37 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLR 37 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHH
Confidence 444445555554444444444444444444443
No 159
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=41.56 E-value=1e+02 Score=22.50 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKD 167 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~ 167 (233)
+|...|..|..|+..|..++..+.+.+..+..
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~e 34 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKE 34 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888777776653
No 160
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.35 E-value=56 Score=25.30 Aligned_cols=23 Identities=17% Similarity=0.470 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLS 157 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~ 157 (233)
..|+.++..|+..+..|...|..
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444444444433
No 161
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.92 E-value=1.3e+02 Score=23.54 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+..|+.++..|+..+..|...|..|.+....|+......-.-|.++
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 5567777777777777777777777777777776666655555444
No 162
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=40.88 E-value=30 Score=22.01 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 157 SLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 157 ~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.|..++..|..+|..|..++..|.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344555666666666666666543
No 163
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=40.21 E-value=31 Score=22.07 Aligned_cols=23 Identities=9% Similarity=-0.062 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026806 157 SLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 157 ~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.|..++..|..+|..|..++..|
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHH
Confidence 34445555556666666665554
No 164
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.62 E-value=1.3e+02 Score=23.18 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..+..+...+..|+.+...++.++......|..|..=-..|-.+|+.++
T Consensus 75 ~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 75 LALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677777777777777777777777666666767766654
No 165
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.37 E-value=1.2e+02 Score=22.72 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLK 166 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~ 166 (233)
...-.++.++...+..|..|..++..|..++..|.
T Consensus 38 ~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 38 TDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666665543
No 166
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.17 E-value=58 Score=30.26 Aligned_cols=46 Identities=20% Similarity=0.144 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
+|..++..|+.+...|..+...+..+...+..|-..++.++..++.
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444444444444444444445555555566666666654
No 167
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=39.17 E-value=91 Score=21.33 Aligned_cols=23 Identities=0% Similarity=0.098 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~ 156 (233)
+..|..+|.+|..+...|+..+.
T Consensus 13 V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 13 AQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 168
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.72 E-value=1.3e+02 Score=23.17 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
...+..+...+..|+.+...++.++......|..|..=-..|-.+|+.++
T Consensus 76 ~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 76 CMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777777777777777777766666777776654
No 169
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=37.84 E-value=50 Score=30.67 Aligned_cols=24 Identities=21% Similarity=0.061 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 153 DELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 153 ~el~~L~~~~~~L~~EN~~LR~el 176 (233)
.++..|.+....+..|+..|++++
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444443
No 170
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=37.57 E-value=71 Score=25.01 Aligned_cols=27 Identities=30% Similarity=0.269 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKY 162 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~ 162 (233)
+|..+|+.|..++..|.+++..|..++
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444443
No 171
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.22 E-value=2e+02 Score=24.61 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGK 164 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~ 164 (233)
+...|..++.....|+..|+.++..+..+...
T Consensus 28 En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 28 ENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33344444444444555555555554444433
No 172
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=37.07 E-value=15 Score=22.61 Aligned_cols=19 Identities=11% Similarity=0.212 Sum_probs=16.6
Q ss_pred hhhhhhhhhchhHHHHhHh
Q 026806 35 DINRDIFATKREKINQMHE 53 (233)
Q Consensus 35 ~~~~~~~~~~r~~~~~m~~ 53 (233)
...++..+++|++|.+|++
T Consensus 3 ~~krr~iL~rrpSYrkIln 21 (28)
T 1kdx_B 3 SQKRREILSRRPSYRKILN 21 (28)
T ss_dssp HHHHHHHHTTSTHHHHHHH
T ss_pred hhhhhhhhhcCchHHHHHH
Confidence 3577888999999999998
No 173
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=37.01 E-value=50 Score=29.42 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 138 QKAVEELKAESAVLKDELLSLSAKYGKLKDEN 169 (233)
Q Consensus 138 e~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN 169 (233)
+.+++.|+.+++.|..++..|......+...|
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n 215 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKAN 215 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44666666666666666666665555555443
No 174
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=36.74 E-value=77 Score=20.21 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026806 157 SLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 157 ~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.|..++..|..+|..|..++..|
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Confidence 34444555555555555555543
No 175
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=36.64 E-value=77 Score=24.87 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
+++.+|+.+|+.++..+++|+.=.....
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks 31 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKI 31 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888877777776555433
No 176
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=36.54 E-value=74 Score=22.91 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 129 RKQEEFKKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~~L~~el~~L 158 (233)
.|...+.+|+..+..-..++..|+.++..+
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788877777777776666665543
No 177
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=36.12 E-value=48 Score=26.04 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 149 AVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 149 ~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
..|..++..|.+++..+..|...|+.++...
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888887764
No 178
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=35.84 E-value=21 Score=24.30 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLK 152 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~ 152 (233)
.++++|+.+|..|+.....|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 678888888888887665543
No 179
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=35.68 E-value=46 Score=20.77 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026806 157 SLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 157 ~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.|.......++||-.|.++++.|
T Consensus 5 qlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 34445556678888888877765
No 180
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.49 E-value=75 Score=29.51 Aligned_cols=43 Identities=28% Similarity=0.327 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVE 174 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~ 174 (233)
.++..|+.+...|..++..|..++..+..++..+..|...|+.
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455677788888888888888888888888888888777764
No 181
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=34.75 E-value=1.7e+02 Score=23.11 Aligned_cols=8 Identities=13% Similarity=0.406 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 026806 166 KDENEAIV 173 (233)
Q Consensus 166 ~~EN~~LR 173 (233)
...|..|+
T Consensus 63 e~~n~~L~ 70 (155)
T 2oto_A 63 EDQRKDLE 70 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 182
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=34.20 E-value=60 Score=28.14 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 130 KQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKL 165 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L 165 (233)
+...++++-.+.+.+..+...|..++..+..++..|
T Consensus 139 ~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~L 174 (250)
T 2ve7_C 139 CRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERL 174 (250)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333333333
No 183
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=33.88 E-value=93 Score=21.83 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~ 156 (233)
.|..+|..|+++|..|...+.
T Consensus 14 aLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665554
No 184
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=33.83 E-value=45 Score=21.30 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026806 157 SLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 157 ~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.|..+...|..+|..|..++..|
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 44455556666666666666654
No 185
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=33.78 E-value=37 Score=24.20 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVL 151 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L 151 (233)
.|+..|+.++..|+.++..|
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 186
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=33.67 E-value=1.1e+02 Score=20.48 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 026806 170 EAIVEELKL 178 (233)
Q Consensus 170 ~~LR~el~~ 178 (233)
..|+..+..
T Consensus 37 aalksklqa 45 (48)
T 1g6u_A 37 AALKSKLQA 45 (48)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 187
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=33.36 E-value=38 Score=24.88 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 026806 168 ENEAIVEEL 176 (233)
Q Consensus 168 EN~~LR~el 176 (233)
+|..||.+|
T Consensus 51 q~~lLK~EI 59 (71)
T 3bbp_D 51 QIKLLKSEI 59 (71)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 188
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.32 E-value=0.96 Score=34.77 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q 026806 109 ELKLAKRRQSNRESARRSRMRKQ 131 (233)
Q Consensus 109 e~KR~RRk~sNRESARRSR~RKq 131 (233)
-.+..||+-+||.+|+++|.||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 34567899999999999999874
No 189
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=33.29 E-value=42 Score=21.44 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026806 157 SLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 157 ~L~~~~~~L~~EN~~LR~el~~L 179 (233)
.|..++..|..+|..|..++..|
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHH
Confidence 34455555666666666666554
No 190
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=33.28 E-value=1.5e+02 Score=21.96 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
++++-|..--..|..=-+.|..-|..|.+....|...-..|+.+..+|
T Consensus 25 aEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 25 AELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444454444443
No 191
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.21 E-value=1.8e+02 Score=27.13 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 152 KDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 152 ~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
..++..|.++...++.+-..|..++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444433333
No 192
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=32.07 E-value=2.1e+02 Score=23.52 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.++.|..-+-.|+.|...=+-+.+.....+..|..||..++.+|.-++
T Consensus 113 MVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 113 MVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 445555555556555555445555666788899999999999988764
No 193
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=31.83 E-value=95 Score=19.36 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 137 LQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~ 160 (233)
|+..|..|..-.+.|..++.+|.+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666665543
No 194
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=31.49 E-value=73 Score=21.87 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLK 166 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~ 166 (233)
..|+.-|+.|+..|..|...|.-|...+..|+
T Consensus 20 aklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 35666677777777777776666655554444
No 195
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=31.42 E-value=70 Score=19.14 Aligned_cols=16 Identities=56% Similarity=0.667 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 026806 139 KAVEELKAESAVLKDE 154 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~e 154 (233)
.+|..|.-|...|+.+
T Consensus 7 devgelkgevralkde 22 (27)
T 3v86_A 7 DEVGELKGEVRALKDE 22 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3333333333333333
No 196
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.15 E-value=2.2e+02 Score=23.37 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 026806 159 SAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 159 ~~~~~~L~~EN~~LR~el~~L~ 180 (233)
+.....++..|..|+.++.+-.
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~ 128 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKD 128 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666543
No 197
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.06 E-value=2e+02 Score=27.43 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026806 130 KQEEFKKLQKAVEELKAES 148 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN 148 (233)
-+..+++|..+.+.+..+.
T Consensus 45 ~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555544444443
No 198
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=30.85 E-value=1.3e+02 Score=22.64 Aligned_cols=24 Identities=42% Similarity=0.443 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
.|..+|..|+.++..|+.++..|+
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554444443
No 199
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=30.65 E-value=1.4e+02 Score=20.99 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
..|-.+|..|+..+..-..+|.+|..
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888887777776643
No 200
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=30.37 E-value=1.3e+02 Score=23.08 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKD 167 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~ 167 (233)
..++.+|..++..+..+|..|..++..++.....+..
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 201
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=29.96 E-value=16 Score=25.16 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 158 LSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 158 L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
|..-...|+..|.-|...++.|. ..|+.|+
T Consensus 22 lenivarlendnanlekdianle--kdianle 51 (56)
T 3he4_A 22 LENIVARLENDNANLEKDIANLE--KDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHH--HHHHHHH
Confidence 33344556677777777777765 4566665
No 202
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=29.23 E-value=1.9e+02 Score=23.76 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 114 KRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 114 RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
+..++.|+..+.==-+.+.++..|..+-..-.........++...++.|..+ |..|+.+|..+
T Consensus 147 ~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~l---n~~L~~eLp~l 209 (251)
T 2fic_A 147 KSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEM---NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 203
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=28.85 E-value=1.6e+02 Score=21.15 Aligned_cols=53 Identities=21% Similarity=0.146 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 125 RSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 125 RSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~ 177 (233)
+-|...+..+..|+.++..++.+-.....+.+.|..--..|..|-...|.-|.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566778888889999999998888888888888888888888888775553
No 204
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=28.67 E-value=2.8e+02 Score=32.63 Aligned_cols=97 Identities=12% Similarity=0.087 Sum_probs=47.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH-------HH
Q 026806 115 RRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSL--------------SAKYGKLKDENEA-------IV 173 (233)
Q Consensus 115 Rk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L--------------~~~~~~L~~EN~~-------LR 173 (233)
..+.+-+.|...=..+++.+.+|+.+++.|+.+-..+..+.+.| ..-...|..|+.+ |+
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Confidence 44445555555555666677777776666666554443333333 2333445555543 34
Q ss_pred HHHHhhcCcchhhhHHHhcCCCCCCCCcchhhhhhhhhhhc
Q 026806 174 EELKLRHRADAISYLEALMPHNLMNGESYRREENLALFQSR 214 (233)
Q Consensus 174 ~el~~L~g~~~vs~L~~~~~~~~~~~~~~~~~~~l~~~q~~ 214 (233)
.++..|.|.--++.-...--|. =...+ |+.++.-|...
T Consensus 2098 ~~~~~L~GD~LLaaafisY~G~--f~~~~-R~~l~~~W~~~ 2135 (3245)
T 3vkg_A 2098 TQMSTVVGDVVLASAFLAYIGF--FDQNF-RTDLMRKWMIR 2135 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGG--SCHHH-HHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHcCC--CCHHH-HHHHHHHHHHH
Confidence 4444455544333221111121 22345 66677777654
No 205
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=28.64 E-value=1.8e+02 Score=21.64 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..|+..|..++..+..+.. +...|+..|..|.-++.+|.
T Consensus 38 vdYI~~Lq~e~~r~~e~e~-----------r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHTHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHH
Confidence 4677766665555544443 34467778888887777753
No 206
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=27.77 E-value=1.5e+02 Score=22.05 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcCcchhhhHHHhcC-CCCCCCCcc
Q 026806 170 EAIVEELKLRHRADAISYLEALMP-HNLMNGESY 202 (233)
Q Consensus 170 ~~LR~el~~L~g~~~vs~L~~~~~-~~~~~~~~~ 202 (233)
..|-.+|..++..+.....+...+ .++-|+..+
T Consensus 43 QsLQvqLE~IRqadt~~qvr~Il~e~~l~di~~~ 76 (79)
T 1tu3_F 43 QTLQVQLERIRQADSLERIRAILNDTKLTDINQL 76 (79)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHTC----------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHccCccchHhhC
Confidence 478889999998888888877763 445554443
No 207
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=27.71 E-value=1.8e+02 Score=25.03 Aligned_cols=15 Identities=27% Similarity=0.142 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 026806 146 AESAVLKDELLSLSA 160 (233)
Q Consensus 146 ~EN~~L~~el~~L~~ 160 (233)
.+|..+..++..+.-
T Consensus 96 ~~Ne~l~~~~~~l~l 110 (252)
T 3e98_A 96 RENDRLFDKTRRLVL 110 (252)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 208
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=27.67 E-value=2.2e+02 Score=23.89 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=12.0
Q ss_pred chhhhhhhhhhhhhchhHHHHh
Q 026806 30 SDESIDINRDIFATKREKINQM 51 (233)
Q Consensus 30 ~~~~~~~~~~~~~~~r~~~~~m 51 (233)
|++.|+.--+.-...+..|=+=
T Consensus 51 s~~~i~~eA~~~~me~e~Yv~e 72 (175)
T 3mud_A 51 SESEISQEADDMAMEKGKYVGE 72 (175)
T ss_dssp EHHHHHHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHHHhcCcHHHHHHH
Confidence 3445555555556666666443
No 209
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.41 E-value=1.7e+02 Score=26.56 Aligned_cols=40 Identities=13% Similarity=0.000 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEE 175 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~e 175 (233)
.|+..|.....+...|...+..+..++..|...-..|+..
T Consensus 16 ~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 16 ILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443444433
No 210
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=27.31 E-value=2.7e+02 Score=25.58 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 150 VLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 150 ~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
.|..++..|.++...++.+-..+..++..
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 211
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.99 E-value=1.3e+02 Score=21.28 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 127 RMRKQEEFKKLQKAVEELKA----ESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 127 R~RKq~~leeLe~~V~~L~~----EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
|.+=...+++|..-|..+.. ....|...+ +-+..|..++..|+.++..|
T Consensus 24 R~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai----~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 24 RDHIKDSFHSLRDSVPSLQGEKASRAQILDKAT----EYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33335666777776665531 222222222 23344555555555555443
No 212
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=26.60 E-value=1.4e+02 Score=21.04 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=7.5
Q ss_pred HHHHHHHhhHHHHHHHHH
Q 026806 111 KLAKRRQSNRESARRSRM 128 (233)
Q Consensus 111 KR~RRk~sNRESARRSR~ 128 (233)
||-|-++.-|.+-.+-|.
T Consensus 5 kryknr~asrk~rakfkn 22 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQ 22 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 213
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=26.36 E-value=1.8e+02 Score=20.80 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~ 156 (233)
.|+..|+.++..|+.++..|...++
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555444
No 214
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=26.34 E-value=2.1e+02 Score=27.71 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGK 164 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~ 164 (233)
+.++..+-+.+++||..++++.......+..
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~ 66 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYEA 66 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666777766666666555443
No 215
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.92 E-value=1.9e+02 Score=21.85 Aligned_cols=38 Identities=13% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDE 168 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~E 168 (233)
..+++.|+..+..|+..-..++.++..+.+....+...
T Consensus 94 ~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 216
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.53 E-value=2.1e+02 Score=21.39 Aligned_cols=9 Identities=44% Similarity=0.645 Sum_probs=4.3
Q ss_pred hHHHHHHHH
Q 026806 119 NRESARRSR 127 (233)
Q Consensus 119 NRESARRSR 127 (233)
-||+|+.-.
T Consensus 24 KrEaA~Ee~ 32 (84)
T 1gmj_A 24 KREQAEEER 32 (84)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHhHHH
Confidence 345555443
No 217
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=25.52 E-value=1.9e+02 Score=25.16 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=28.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 112 LAKRRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLK 166 (233)
Q Consensus 112 R~RRk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~ 166 (233)
..|+=+..|-.+=+ +.+..|+.++...+.|+..+...+...++....+.
T Consensus 164 ~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 164 VVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544332 34566777777777777776666665554444433
No 218
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=25.51 E-value=62 Score=25.03 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 026806 162 YGKLKDENEAIVEELKLR 179 (233)
Q Consensus 162 ~~~L~~EN~~LR~el~~L 179 (233)
...|..+|..|..++.+|
T Consensus 93 ~~~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQEL 110 (118)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344666677776666654
No 219
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=25.51 E-value=3.3e+02 Score=25.85 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 026806 164 KLKDENEAIVEELKLR 179 (233)
Q Consensus 164 ~L~~EN~~LR~el~~L 179 (233)
.|..+-..|+.++..+
T Consensus 120 ~l~~~~~~l~~~i~~l 135 (501)
T 1wle_A 120 SLRARGREIRKQLTLL 135 (501)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 220
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.51 E-value=2.4e+02 Score=22.08 Aligned_cols=61 Identities=28% Similarity=0.321 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Q 026806 119 NRESARRSRMRKQEEFKKLQKAVEELKA---ESAVLKDELLSLSAKYG-------KLKDENEAIVEELKLR 179 (233)
Q Consensus 119 NRESARRSR~RKq~~leeLe~~V~~L~~---EN~~L~~el~~L~~~~~-------~L~~EN~~LR~el~~L 179 (233)
|=.+|-..=..|+..+++|..++..+.. ...-|+.++..-...+. ++..|...|..++..|
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence 4455666666677778888777777766 44556666555544443 3444555555554443
No 221
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=25.36 E-value=2.1e+02 Score=24.46 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 127 RMRKQEEFKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 127 R~RKq~~leeLe~~V~~L~~EN~~L~~el~ 156 (233)
+.||.+-++-|..++..|+.+-..|..++.
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~ 43 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECS 43 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888899999999999888888876
No 222
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.95 E-value=2.4e+02 Score=21.87 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 137 LQKAVEELKAESAVLKDELLSLSAKYGKLKDENE 170 (233)
Q Consensus 137 Le~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~ 170 (233)
|..+++.+..+...|..++..|...+..|+.|-.
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 223
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.67 E-value=1.6e+02 Score=19.67 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026806 141 VEELKAESAVLKDELLSLS 159 (233)
Q Consensus 141 V~~L~~EN~~L~~el~~L~ 159 (233)
|++|+.|...|..+...|.
T Consensus 5 vaqlenevaslenenetlk 23 (49)
T 3he5_A 5 VAQLENEVASLENENETLK 23 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHH
Confidence 5555555555554444433
No 224
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=24.63 E-value=1.3e+02 Score=25.69 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
-.-.+++.|+++|..|.+++++|.+.
T Consensus 158 ~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 158 YCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555555444
No 225
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.31 E-value=2e+02 Score=26.01 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLS 159 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~ 159 (233)
.+..|+..+..++.....|..+|..|.
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333
No 226
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.23 E-value=1.4e+02 Score=19.91 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 026806 144 LKAESAVLKDELLS 157 (233)
Q Consensus 144 L~~EN~~L~~el~~ 157 (233)
|+.|.+.|..++..
T Consensus 25 leselqalekklaa 38 (48)
T 1g6u_A 25 LESELQALEKKLAA 38 (48)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 227
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.89 E-value=1.8e+02 Score=34.27 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
..+.+++.++.+...|..+|..|+.++..+..|-..|+.++...
T Consensus 2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666777777777777777777787777654
No 228
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=23.85 E-value=3.3e+02 Score=24.01 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..++.|+..+++.|..--..+..+|..|.+.=..|+.+...++.++..+.
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999888888888888888877764
No 229
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.31 E-value=76 Score=24.09 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-cchhhhHHHhcC
Q 026806 158 LSAKYGKLKDENEAIVEELKLRHR-ADAISYLEALMP 193 (233)
Q Consensus 158 L~~~~~~L~~EN~~LR~el~~L~g-~~~vs~L~~~~~ 193 (233)
|+.+...+..+...|+.++..|++ |-.|..+...++
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d 48 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILE 48 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEec
Confidence 333444444555666667777665 334554444443
No 230
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.11 E-value=3.4e+02 Score=22.87 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L 158 (233)
+.+|+.++..|...-..+..++..+
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~ 58 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLAL 58 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 231
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=23.08 E-value=2.4e+02 Score=21.07 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
..+..+...+..|+.+...++.++......|..|..=-..|-.+|+..+
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYr 85 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYR 85 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777777777777777777777654
No 232
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.70 E-value=1.6e+02 Score=18.95 Aligned_cols=7 Identities=0% Similarity=0.083 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 026806 167 DENEAIV 173 (233)
Q Consensus 167 ~EN~~LR 173 (233)
.|-.+||
T Consensus 22 ~eV~RLk 28 (36)
T 1kd8_B 22 NKVARLK 28 (36)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 233
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.32 E-value=2.5e+02 Score=21.01 Aligned_cols=27 Identities=7% Similarity=0.304 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchh
Q 026806 159 SAKYGKLKDENEAIVEELKLRHRADAI 185 (233)
Q Consensus 159 ~~~~~~L~~EN~~LR~el~~L~g~~~v 185 (233)
...|+.+..=-..|-..++.++|.+..
T Consensus 47 Lh~YNeiKD~gq~L~g~iA~~rgv~~~ 73 (85)
T 3viq_B 47 LHTYNEIRDIALGMIGKVAEHEKCTSV 73 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGG
T ss_pred HHHHhHHHHHHHHHHHHHHHHcCCcHH
Confidence 345555555556666667777765543
No 234
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.89 E-value=3.6e+02 Score=22.76 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 130 KQEEFKKLQKAVEELKAESAVLKDELLSLSAKYG 163 (233)
Q Consensus 130 Kq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~ 163 (233)
-+++...|..++..|+.+...|..++..+...-.
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~ 170 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKE 170 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666665544433
No 235
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.62 E-value=1.4e+02 Score=19.67 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSA 160 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~ 160 (233)
+|..+-+.|+.....|..++..|.+
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344443333
No 236
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.53 E-value=2.6e+02 Score=21.62 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026806 135 KKLQKAVEELKAESAVLK 152 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~ 152 (233)
++|+.++..|+.....|.
T Consensus 91 ~~l~~~i~~L~~~~~~L~ 108 (142)
T 3gp4_A 91 IELKNRIDVMQEALDRLD 108 (142)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444433333333
No 237
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.38 E-value=2.9e+02 Score=23.90 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--cchhhhHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR--ADAISYLEA 190 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g--~~~vs~L~~ 190 (233)
-..|..+|..|+.++..|+.++..|+ .|...-..|..=|..|.| ++.+.+|..
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLk----eLae~~q~la~vi~~l~~~~~~~~e~~~~ 171 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELA----EVAEHVQYMAELIERLNGEPLDNFESLDN 171 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCcccccCchh
Confidence 34455555556666655555555443 333444455555555544 445555543
No 238
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=21.37 E-value=1.5e+02 Score=18.16 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELLSL 158 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~~L 158 (233)
.+.|+.+.+.|+...+.|..++..|
T Consensus 3 wealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666555544
No 239
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.32 E-value=3.7e+02 Score=25.51 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 150 VLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 150 ~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
.|..++..|.+++..|+.+-..+..++..
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555544443
No 240
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.96 E-value=2.7e+02 Score=20.86 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVL 151 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L 151 (233)
++.+..++..|+.+|..|
T Consensus 47 ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 47 IEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 241
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.91 E-value=1.9e+02 Score=19.06 Aligned_cols=44 Identities=27% Similarity=0.393 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 135 KKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 135 eeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
..|+..+..+...-..+..++..+...+..+..+-...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~ 51 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIK 51 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444445555555555555555544444444444
No 242
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=20.76 E-value=2.5e+02 Score=20.52 Aligned_cols=52 Identities=25% Similarity=0.145 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhHH
Q 026806 136 KLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRADAISYLE 189 (233)
Q Consensus 136 eLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~~vs~L~ 189 (233)
||..+|..-+.|..+|..=+..|+.++.....=|..|..++.-.+ .++++|.
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q--~s~~~l~ 58 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQ--IKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhHHHH
Confidence 445555555555555555555555555555555555555554433 3445554
No 243
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.50 E-value=2.1e+02 Score=23.04 Aligned_cols=47 Identities=13% Similarity=0.288 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLR 179 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L 179 (233)
++..|...+.....+...|..++..-......++.++..|..+|.+|
T Consensus 33 ~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 33 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555556666666666666655
No 244
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=20.46 E-value=1.9e+02 Score=20.63 Aligned_cols=44 Identities=11% Similarity=0.210 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEEL 176 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el 176 (233)
+.+++..++..|+.|..---.+|+.+.-.|+..+.++..|..++
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I 60 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRI 60 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44444455555555444333355544444444444444343333
No 245
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.09 E-value=4.3e+02 Score=22.86 Aligned_cols=9 Identities=11% Similarity=0.398 Sum_probs=4.8
Q ss_pred hhHHHHhHh
Q 026806 45 REKINQMHE 53 (233)
Q Consensus 45 r~~~~~m~~ 53 (233)
...|..|++
T Consensus 85 e~dF~~LK~ 93 (228)
T 3q0x_A 85 EEDFQSLKN 93 (228)
T ss_dssp TTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555555
No 246
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=20.09 E-value=2.6e+02 Score=24.44 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 112 LAKRRQSNRESA-RRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 112 R~RRk~sNRESA-RRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
-.=.-+.|||.. +.+|.||+.-.+++. .|+... .-..+|..|.+++..++.||..-.++|..
T Consensus 94 ~~LK~IR~~E~svqp~R~~R~~l~~~I~----kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n 156 (234)
T 3plt_A 94 VTLKSIRNIEASVQPSRDRKEKITDEIA----HLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSN 156 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334566688754 666666655444443 233221 11245556666666666666665555544
Done!