Query 026806
Match_columns 233
No_of_seqs 146 out of 550
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 22:38:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026806.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026806hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sknp_ a.37.1.1 (P:) Skn-1 {C 88.1 0.11 8.2E-06 36.9 2.2 28 110-137 47-74 (74)
2 d2oa5a1 d.362.1.1 (A:7-102) Un 75.3 0.76 5.5E-05 33.9 2.5 23 134-156 4-26 (96)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 72.7 3.9 0.00029 28.0 5.8 24 158-181 64-87 (88)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 69.4 7.6 0.00055 26.5 6.7 33 132-164 52-84 (88)
5 d1uklc_ a.38.1.1 (C:) SREBP-2 66.3 3.8 0.00028 26.6 4.3 25 132-156 33-57 (61)
6 d1nlwa_ a.38.1.1 (A:) Mad prot 65.0 5.5 0.0004 26.7 5.1 31 131-161 46-76 (79)
7 d1nkpb_ a.38.1.1 (B:) Max prot 62.7 11 0.00078 25.4 6.3 25 157-181 58-82 (83)
8 d1nkpb_ a.38.1.1 (B:) Max prot 57.9 7.3 0.00053 26.3 4.7 32 132-163 47-78 (83)
9 d1am9a_ a.38.1.1 (A:) SREBP-1a 55.5 9.6 0.0007 25.6 5.0 20 133-152 51-70 (80)
10 d2azeb1 e.63.1.2 (B:201-301) T 55.2 19 0.0014 25.8 6.8 40 133-172 2-43 (101)
11 d2ncda_ c.37.1.9 (A:) Kinesin 44.5 4 0.00029 34.6 1.7 43 139-181 3-45 (368)
12 d1nlwa_ a.38.1.1 (A:) Mad prot 38.6 41 0.003 22.0 6.1 22 156-177 57-78 (79)
13 d1fxkc_ a.2.5.1 (C:) Prefoldin 33.9 66 0.0048 22.5 7.0 44 133-180 2-45 (133)
14 d2oa5a1 d.362.1.1 (A:7-102) Un 32.1 12 0.0009 27.0 2.5 24 155-178 4-27 (96)
15 d1seta1 a.2.7.1 (A:1-110) Sery 29.5 59 0.0043 22.3 5.9 51 115-166 48-98 (110)
16 d1x4ta1 a.2.15.1 (A:7-86) Pre- 28.9 64 0.0047 22.3 5.8 51 132-183 26-76 (80)
17 d1uklc_ a.38.1.1 (C:) SREBP-2 22.7 47 0.0034 20.9 3.9 21 157-177 37-57 (61)
18 d1k4ta1 a.2.8.1 (A:641-712) Eu 20.7 1.2E+02 0.0086 20.5 7.0 21 129-149 13-33 (72)
No 1
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=88.13 E-value=0.11 Score=36.87 Aligned_cols=28 Identities=29% Similarity=0.561 Sum_probs=23.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 026806 110 LKLAKRRQSNRESARRSRMRKQEEFKKL 137 (233)
Q Consensus 110 ~KR~RRk~sNRESARRSR~RKq~~leeL 137 (233)
.+--||+=+|+.+|+.+|+||....++|
T Consensus 47 irDIRRRGKNKvAAqnCRKRKld~~d~l 74 (74)
T d1sknp_ 47 IRKIRRRGKNKVAARTCRQRRTDRHDKM 74 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhcccHHHHHHHHHhhhhhhccC
Confidence 4466889999999999999998776543
No 2
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=75.30 E-value=0.76 Score=33.87 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026806 134 FKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 134 leeLe~~V~~L~~EN~~L~~el~ 156 (233)
+++|..++..|+-||..|++++.
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~ 26 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVK 26 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777777666655
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.72 E-value=3.9 Score=28.03 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 158 LSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 158 L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
|......|..+|..|+.++..|.|
T Consensus 64 l~~~~~~l~~~~~~L~~~l~~L~g 87 (88)
T d1nkpa_ 64 LISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444455666667777766654
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.35 E-value=7.6 Score=26.46 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGK 164 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~ 164 (233)
.|+..|+.++..|..+...|..++..|..++..
T Consensus 52 ~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 84 (88)
T d1nkpa_ 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555444433
No 5
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.27 E-value=3.8 Score=26.60 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELL 156 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~ 156 (233)
+|+..|+.++..|+.|+..|+....
T Consensus 33 ~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 33 DYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888876553
No 6
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.01 E-value=5.5 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 131 QEEFKKLQKAVEELKAESAVLKDELLSLSAK 161 (233)
Q Consensus 131 q~~leeLe~~V~~L~~EN~~L~~el~~L~~~ 161 (233)
..|+..|+.++..|..+...|..++..|..+
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~ 76 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777776666666666555555443
No 7
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.67 E-value=11 Score=25.37 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 157 SLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 157 ~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
.|.+....|..+|..|+.++..|.|
T Consensus 58 ~l~~~~~~l~~~~~~L~~~l~~L~g 82 (83)
T d1nkpb_ 58 THQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3334444455677777777777655
No 8
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.92 E-value=7.3 Score=26.27 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYG 163 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~ 163 (233)
.|+..|..++..|..+...|..++..|..++.
T Consensus 47 ~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 78 (83)
T d1nkpb_ 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555544443
No 9
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.51 E-value=9.6 Score=25.62 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLK 152 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~ 152 (233)
|+..|+.++..|..++..|.
T Consensus 51 yI~~L~~~~~~L~~e~~~lk 70 (80)
T d1am9a_ 51 YIRFLQHSNQKLKQENLSLR 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333
No 10
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.19 E-value=19 Score=25.78 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLK--DENEAI 172 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~--~EN~~L 172 (233)
++..|+.+++.|..+-..|-..+..+++++..+. .+|..+
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k~ 43 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRL 43 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccC
Confidence 4677889999999999999998888888888877 456554
No 11
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=44.47 E-value=4 Score=34.61 Aligned_cols=43 Identities=14% Similarity=0.021 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026806 139 KAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHR 181 (233)
Q Consensus 139 ~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g 181 (233)
.+++.|...+.++..+++.+.+++.+...+-..|..+|.++.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g 45 (368)
T d2ncda_ 3 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRG 45 (368)
T ss_dssp SSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 4455666667777777777777777777777788888888877
No 12
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.63 E-value=41 Score=21.97 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026806 156 LSLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 156 ~~L~~~~~~L~~EN~~LR~el~ 177 (233)
..+......|..++..|+.+|.
T Consensus 57 ~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 57 RKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444455566666666553
No 13
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=33.86 E-value=66 Score=22.46 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026806 133 EFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRH 180 (233)
Q Consensus 133 ~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~ 180 (233)
.+++|..++..|+.+-..|..++..|.... .|...+..-|..+.
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~----~e~~~~~~~L~~l~ 45 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATI----SELEILEKTLSDIQ 45 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Confidence 367777888888877777777777654433 34444444444443
No 14
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=32.11 E-value=12 Score=27.04 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 026806 155 LLSLSAKYGKLKDENEAIVEELKL 178 (233)
Q Consensus 155 l~~L~~~~~~L~~EN~~LR~el~~ 178 (233)
++.|..++.+|..||..||.++..
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~ 27 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKS 27 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667777888999999999875
No 15
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=29.48 E-value=59 Score=22.32 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026806 115 RRQSNRESARRSRMRKQEEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLK 166 (233)
Q Consensus 115 Rk~sNRESARRSR~RKq~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~ 166 (233)
|...|..|..-. ..|....++|..++..|..+...|..++..+...+..+.
T Consensus 48 ~~~rN~~sk~i~-k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~l 98 (110)
T d1seta1 48 QTERNQVAKRVP-KAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (110)
T ss_dssp HHHHHHHHHHGG-GCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 16
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.93 E-value=64 Score=22.29 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 026806 132 EEFKKLQKAVEELKAESAVLKDELLSLSAKYGKLKDENEAIVEELKLRHRAD 183 (233)
Q Consensus 132 ~~leeLe~~V~~L~~EN~~L~~el~~L~~~~~~L~~EN~~LR~el~~L~g~~ 183 (233)
.-+.|...+|..++...-. -.+|..|..+++.|..|-..-..++.+|.||+
T Consensus 26 ~iikEI~~kvs~Iqn~~L~-e~~IRdLNDeINkL~reK~~WE~rI~eLGGpd 76 (80)
T d1x4ta1 26 QIIGEISKKVAQIQNAGLG-EFRIRDLNDEINKLLREKGHWEVRIKELGGPD 76 (80)
T ss_dssp HHHHHHHHHHHHHHHCCSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3455677777776644332 45778888899999999999999999999986
No 17
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.75 E-value=47 Score=20.93 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026806 157 SLSAKYGKLKDENEAIVEELK 177 (233)
Q Consensus 157 ~L~~~~~~L~~EN~~LR~el~ 177 (233)
.|+.+...|..||..|+....
T Consensus 37 ~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 37 YLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556665555543
No 18
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.67 E-value=1.2e+02 Score=20.47 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026806 129 RKQEEFKKLQKAVEELKAESA 149 (233)
Q Consensus 129 RKq~~leeLe~~V~~L~~EN~ 149 (233)
.|++.+.+...++..+..+-.
T Consensus 13 ~Kk~qi~~a~~e~K~ak~d~k 33 (72)
T d1k4ta1 13 AKKEQLADARRDLKSAKADAK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665443
Done!