BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026807
MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF
KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIV
NVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQD
GFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS

High Scoring Gene Products

Symbol, full name Information P value
TPR3
tetratricopeptide repeat 3 		protein from Arabidopsis thaliana 4.2e-95

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026807
        (233 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2020240 - symbol:TPR3 "tetratricopeptide repea...   946  4.2e-95   1


>TAIR|locus:2020240 [details] [associations]
            symbol:TPR3 "tetratricopeptide repeat 3" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006606 "protein import into nucleus"
            evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
            [GO:0009909 "regulation of flower development" evidence=RCA]
            [GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0034968
            "histone lysine methylation" evidence=RCA] InterPro:IPR001440
            InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
            Pfam:PF00515 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
            EMBL:CP002684 GO:GO:0005829 Gene3D:1.25.40.10 HSSP:P31948
            EMBL:AY080790 EMBL:AY114043 IPI:IPI00537113 RefSeq:NP_171915.1
            UniGene:At.43195 ProteinModelPortal:Q8RXN1 SMR:Q8RXN1 STRING:Q8RXN1
            PRIDE:Q8RXN1 EnsemblPlants:AT1G04190.1 GeneID:839442
            KEGG:ath:AT1G04190 TAIR:At1g04190 InParanoid:Q8RXN1 OMA:FVQFESP
            PhylomeDB:Q8RXN1 ProtClustDB:CLSN2681771 ArrayExpress:Q8RXN1
            Genevestigator:Q8RXN1 Uniprot:Q8RXN1
        Length = 328

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 170/233 (72%), Positives = 200/233 (85%)

Query:     1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
             ME+Y+DAL+AF+ ALQYNPQS EVSRKIKR+ QL K+K+RAQE+EN+RSNVDM +HL+ F
Sbjct:    96 MEKYEDALAAFEMALQYNPQSTEVSRKIKRLGQLQKEKQRAQELENLRSNVDMAKHLESF 155

Query:    61 KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIV 120
             KSEMSE YG EECWK +FSF+VETMETAVKSWHETSKVD +VYFLLDKEKT T+KYAP V
Sbjct:   156 KSEMSENYGTEECWKEMFSFIVETMETAVKSWHETSKVDTRVYFLLDKEKTQTDKYAPAV 215

Query:   121 NVDKAFESPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQD 180
             N+DKAF+SP TH +CF +LRQYA++SFS AACLV PKS ISYPQVW+G G RKW+    D
Sbjct:   216 NIDKAFQSPDTHSNCFTYLRQYAEESFSKAACLVTPKSSISYPQVWKGVGSRKWKLGPND 275

Query:   181 GFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKLSNS 233
             G FVQFESP LRK+WFI SS EKG+TLCR+P+ LDI AHE+ PR+FKEK  +S
Sbjct:   276 GIFVQFESPSLRKVWFISSSKEKGQTLCREPQALDIGAHEILPRIFKEKSKSS 328


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.130   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      233       233   0.00086  113 3  11 22  0.42    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  199 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.41u 0.16s 22.57t   Elapsed:  00:00:01
  Total cpu time:  22.41u 0.16s 22.57t   Elapsed:  00:00:01
  Start:  Sat May 11 06:28:27 2013   End:  Sat May 11 06:28:28 2013

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