BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026807
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UIF9|BAZ2A_HUMAN Bromodomain adjacent to zinc finger domain protein 2A OS=Homo sapiens
GN=BAZ2A PE=1 SV=4
Length = 1905
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 48/128 (37%), Gaps = 20/128 (15%)
Query: 118 PIVNVDKAFESPHTHGSCFQFLRQYADDS-----FSSAACL-VAPKSIIS----YPQVWR 167
P V+ D+ SP S R A + FSS +APK PQ
Sbjct: 1340 PAVSEDQPTPSPQQLASSKPMNRPSAANPCSPVQFSSTPLAGLAPKRRAGDPGEMPQSPT 1399
Query: 168 GQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLC------RDPEVLDISAHEV 221
G G K R FF Q E L +L P E +C RDPE+LD +
Sbjct: 1400 GLGQPKRRGRPPSKFFKQMEQRYLTQLTAQPVPPE----MCSGWWWIRDPEMLDAMLKAL 1455
Query: 222 FPRLFKEK 229
PR +EK
Sbjct: 1456 HPRGIREK 1463
>sp|Q8C1Z7|BBS4_MOUSE Bardet-Biedl syndrome 4 protein homolog OS=Mus musculus GN=Bbs4
PE=2 SV=1
Length = 520
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 100 AKVYFLLDKEKTDTEKYAPIVNVD-KAFESPHTHGSCFQFLRQY--ADDSFSSA 150
A+ FLL K K TE Y ++ K +E H G C+ +L+Q+ A D SA
Sbjct: 108 ARSLFLLGKHKAATEVYNEAAKLNQKDWEICHNLGVCYTYLKQFNKAQDQLHSA 161
>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4
Length = 34350
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 35/119 (29%)
Query: 76 HVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSC 135
+ +++VE +T +WH S A+ + K KT TE
Sbjct: 25363 QISNYIVEKRDTTTTTWHMVSATVARTTIKITKLKTGTE--------------------- 25401
Query: 136 FQFLRQYADDSFSSAACLVAPKSIISYP-------------QVWRGQGLRKWRHSQQDG 181
+QF R +A++ + +A L + I+ YP + + Q L +W DG
Sbjct: 25402 YQF-RIFAENRYGKSAPLDSKAVIVQYPFKEPGPPGTPFVTSISKDQMLVQWHEPVNDG 25459
>sp|Q4L7M3|PUR8_STAHJ Adenylosuccinate lyase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=purB PE=3 SV=1
Length = 431
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 28 IKRVSQLAK-DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETME 86
+K++ Q AK D KRAQE+E + D+V F ++SE G E W H + ++
Sbjct: 45 VKKIRQNAKVDVKRAQEIEQ-ETRHDVVA----FTRQVSETLGDERKWVHYGLTSTDVVD 99
Query: 87 TA----VKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFES-PHTHG 133
TA +K +E + D + + + +EK KY ++ + P T G
Sbjct: 100 TALSYVIKQANEIIEKDIERFIKVLEEKAKNYKYTLMMGRTHGVHAEPTTFG 151
>sp|Q8AVU9|EMC2B_XENLA ER membrane protein complex subunit 2-B OS=Xenopus laevis GN=emc2-b
PE=2 SV=1
Length = 297
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
ME+YDDAL + LQ +P + ++ ++A K + + E IR ++ ++L++F
Sbjct: 100 MERYDDALQIYDRILQDDPTNTATRKR-----KIAIRKAQGRNAEAIR---ELNEYLEQF 151
Query: 61 KSEMSEKYGAEECWKHVFSFVVETMETA 88
G +E W + + ++ A
Sbjct: 152 -------VGDQEAWHELAELYINELDYA 172
>sp|Q63W75|CAPP_BURPS Phosphoenolpyruvate carboxylase OS=Burkholderia pseudomallei
(strain K96243) GN=ppc PE=3 SV=1
Length = 994
Score = 30.8 bits (68), Expect = 8.5, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 9 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF--KSEMSE 66
SA L P +AE + KRV+ L K K N+ SN+DMV + S ++
Sbjct: 843 SAVAAYLDGAPDAAE---RGKRVALLKKMNKTWPFFANLLSNMDMVLAKTDLAVASRYAQ 899
Query: 67 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKV 102
++ KHVF E V WH T+ A++
Sbjct: 900 LVADKKLRKHVF-------ERIVAEWHRTADALAEI 928
>sp|A3N6Z8|CAPP_BURP6 Phosphoenolpyruvate carboxylase OS=Burkholderia pseudomallei
(strain 668) GN=ppc PE=3 SV=1
Length = 994
Score = 30.8 bits (68), Expect = 8.5, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 9 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF--KSEMSE 66
SA L P +AE + KRV+ L K K N+ SN+DMV + S ++
Sbjct: 843 SAVAAYLDGAPDAAE---RGKRVALLKKMNKTWPFFANLLSNMDMVLAKTDLAVASRYAQ 899
Query: 67 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKV 102
++ KHVF E V WH T+ A++
Sbjct: 900 LVADKKLRKHVF-------ERIVAEWHRTADALAEI 928
>sp|A1V5U2|CAPP_BURMS Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain
SAVP1) GN=ppc PE=3 SV=1
Length = 994
Score = 30.8 bits (68), Expect = 8.5, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 9 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF--KSEMSE 66
SA L P +AE + KRV+ L K K N+ SN+DMV + S ++
Sbjct: 843 SAVAAYLDGAPDAAE---RGKRVALLKKMNKTWPFFANLLSNMDMVLAKTDLAVASRYAQ 899
Query: 67 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKV 102
++ KHVF E V WH T+ A++
Sbjct: 900 LVADKKLRKHVF-------ERIVAEWHRTADALAEI 928
>sp|Q62LC1|CAPP_BURMA Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain ATCC
23344) GN=ppc PE=3 SV=1
Length = 994
Score = 30.8 bits (68), Expect = 8.5, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 9 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF--KSEMSE 66
SA L P +AE + KRV+ L K K N+ SN+DMV + S ++
Sbjct: 843 SAVAAYLDGAPDAAE---RGKRVALLKKMNKTWPFFANLLSNMDMVLAKTDLAVASRYAQ 899
Query: 67 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKV 102
++ KHVF E V WH T+ A++
Sbjct: 900 LVADKKLRKHVF-------ERIVAEWHRTADALAEI 928
>sp|A2SAH4|CAPP_BURM9 Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain NCTC
10229) GN=ppc PE=3 SV=1
Length = 994
Score = 30.8 bits (68), Expect = 8.5, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 9 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF--KSEMSE 66
SA L P +AE + KRV+ L K K N+ SN+DMV + S ++
Sbjct: 843 SAVAAYLDGAPDAAE---RGKRVALLKKMNKTWPFFANLLSNMDMVLAKTDLAVASRYAQ 899
Query: 67 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKV 102
++ KHVF E V WH T+ A++
Sbjct: 900 LVADKKLRKHVF-------ERIVAEWHRTADALAEI 928
>sp|A3MLK7|CAPP_BURM7 Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain NCTC
10247) GN=ppc PE=3 SV=1
Length = 994
Score = 30.8 bits (68), Expect = 8.5, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 9 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF--KSEMSE 66
SA L P +AE + KRV+ L K K N+ SN+DMV + S ++
Sbjct: 843 SAVAAYLDGAPDAAE---RGKRVALLKKMNKTWPFFANLLSNMDMVLAKTDLAVASRYAQ 899
Query: 67 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKV 102
++ KHVF E V WH T+ A++
Sbjct: 900 LVADKKLRKHVF-------ERIVAEWHRTADALAEI 928
>sp|Q5M7J9|EMC2_XENTR ER membrane protein complex subunit 2 OS=Xenopus tropicalis GN=emc2
PE=2 SV=1
Length = 297
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 60
ME+YDDAL + LQ +P + ++ ++A K + + E IR ++ ++L++F
Sbjct: 100 MERYDDALQIYDRILQDDPTNTAARKR-----KIAIRKAQGRNAEAIR---ELNEYLEQF 151
Query: 61 KSEMSEKYGAEECWKHVFSFVVETMETA 88
G +E W + + ++ A
Sbjct: 152 -------VGDQEAWHELAELYINELDYA 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,746,718
Number of Sequences: 539616
Number of extensions: 3215728
Number of successful extensions: 9781
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 9773
Number of HSP's gapped (non-prelim): 44
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)