Query 026807
Match_columns 233
No_of_seqs 16 out of 18
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 13:00:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2449 Methylmalonate semiald 100.0 3.6E-43 7.9E-48 292.5 -1.6 148 83-230 2-150 (157)
2 KOG0548 Molecular co-chaperone 96.6 0.0021 4.6E-08 63.1 3.8 35 1-35 439-473 (539)
3 PF00515 TPR_1: Tetratricopept 96.3 0.0042 9.2E-08 37.0 2.5 21 1-21 14-34 (34)
4 PF14559 TPR_19: Tetratricopep 96.0 0.051 1.1E-06 35.8 7.0 30 1-30 4-33 (68)
5 PF07719 TPR_2: Tetratricopept 95.6 0.014 2.9E-07 34.2 2.7 21 1-21 14-34 (34)
6 PF13428 TPR_14: Tetratricopep 94.7 0.046 9.9E-07 35.0 3.4 27 1-27 14-40 (44)
7 PF13414 TPR_11: TPR repeat; P 94.0 0.18 3.9E-06 33.3 5.1 29 1-29 16-44 (69)
8 smart00028 TPR Tetratricopepti 93.3 0.08 1.7E-06 27.3 2.1 21 1-21 14-34 (34)
9 PF13432 TPR_16: Tetratricopep 92.8 0.28 6.1E-06 32.3 4.6 32 2-33 11-42 (65)
10 KOG0543 FKBP-type peptidyl-pro 92.8 0.19 4.2E-06 48.1 5.2 38 1-38 304-341 (397)
11 PF13424 TPR_12: Tetratricopep 92.6 0.65 1.4E-05 31.5 6.3 43 1-43 18-64 (78)
12 PF13181 TPR_8: Tetratricopept 92.3 0.11 2.4E-06 30.6 2.0 20 1-20 14-33 (34)
13 PF13432 TPR_16: Tetratricopep 92.2 0.16 3.5E-06 33.5 2.8 22 1-22 44-65 (65)
14 cd00189 TPR Tetratricopeptide 91.8 1.8 3.9E-05 26.2 8.2 27 1-27 13-39 (100)
15 cd00189 TPR Tetratricopeptide 91.1 1.3 2.7E-05 26.9 5.8 40 2-41 48-87 (100)
16 KOG4234 TPR repeat-containing 90.2 0.74 1.6E-05 42.4 5.9 39 1-39 181-219 (271)
17 PRK02603 photosystem I assembl 89.9 3.2 6.9E-05 32.6 8.6 36 2-37 49-84 (172)
18 PLN03088 SGT1, suppressor of 88.6 0.83 1.8E-05 41.0 5.0 24 2-25 50-73 (356)
19 PF13371 TPR_9: Tetratricopept 88.2 0.78 1.7E-05 30.5 3.6 23 2-24 9-31 (73)
20 PRK15359 type III secretion sy 86.9 2.2 4.7E-05 33.3 5.8 34 1-34 37-70 (144)
21 PF13174 TPR_6: Tetratricopept 86.6 0.57 1.2E-05 26.9 1.9 20 2-21 14-33 (33)
22 TIGR02552 LcrH_SycD type III s 86.3 8.7 0.00019 27.9 8.4 28 2-29 31-58 (135)
23 PRK02603 photosystem I assembl 86.1 4.7 0.0001 31.7 7.3 25 1-25 85-109 (172)
24 KOG0553 TPR repeat-containing 85.0 1 2.3E-05 42.0 3.7 39 1-39 162-200 (304)
25 KOG0624 dsRNA-activated protei 84.9 1.3 2.8E-05 43.5 4.4 33 2-34 355-387 (504)
26 PF13371 TPR_9: Tetratricopept 84.7 3.4 7.3E-05 27.4 5.2 25 1-25 42-66 (73)
27 CHL00033 ycf3 photosystem I as 84.5 8 0.00017 30.0 7.9 43 1-43 48-90 (168)
28 PLN03098 LPA1 LOW PSII ACCUMUL 84.0 2.3 5E-05 41.6 5.7 24 1-24 88-111 (453)
29 TIGR02521 type_IV_pilW type IV 83.7 9.1 0.0002 28.2 7.5 27 2-28 45-71 (234)
30 PRK10370 formate-dependent nit 83.2 5.8 0.00013 32.9 7.1 30 1-30 86-115 (198)
31 PRK15359 type III secretion sy 82.8 2.1 4.5E-05 33.4 4.1 27 2-28 72-98 (144)
32 TIGR02552 LcrH_SycD type III s 82.2 2.7 5.9E-05 30.5 4.2 42 1-42 64-105 (135)
33 PF14559 TPR_19: Tetratricopep 78.8 2.1 4.5E-05 28.0 2.5 29 2-30 39-67 (68)
34 PF13429 TPR_15: Tetratricopep 78.1 4.2 9.1E-05 33.8 4.6 26 2-27 160-185 (280)
35 PRK11788 tetratricopeptide rep 77.5 18 0.00039 30.7 8.3 20 3-22 195-214 (389)
36 CHL00033 ycf3 photosystem I as 77.5 31 0.00068 26.7 9.0 31 1-31 85-115 (168)
37 KOG3060 Uncharacterized conser 77.4 7.5 0.00016 36.4 6.4 62 1-77 99-160 (289)
38 PRK10370 formate-dependent nit 76.9 6.2 0.00013 32.7 5.3 30 2-31 53-82 (198)
39 KOG1174 Anaphase-promoting com 76.6 3 6.6E-05 41.7 3.9 31 3-33 486-516 (564)
40 PLN03088 SGT1, suppressor of 76.3 14 0.0003 33.3 7.7 25 2-26 16-40 (356)
41 TIGR02795 tol_pal_ybgF tol-pal 75.7 6.6 0.00014 27.1 4.4 21 2-22 16-36 (119)
42 PRK14720 transcript cleavage f 75.6 18 0.0004 38.1 9.3 42 1-43 129-170 (906)
43 TIGR00540 hemY_coli hemY prote 75.5 31 0.00067 31.1 9.7 42 2-43 167-208 (409)
44 PRK15363 pathogenicity island 75.1 2.2 4.7E-05 36.2 2.2 25 1-25 82-106 (157)
45 TIGR02521 type_IV_pilW type IV 74.3 32 0.0007 25.3 8.4 25 2-26 149-173 (234)
46 TIGR02917 PEP_TPR_lipo putativ 73.2 15 0.00033 32.9 7.0 31 2-32 784-814 (899)
47 PRK11189 lipoprotein NlpI; Pro 72.9 6.6 0.00014 33.9 4.6 23 2-24 112-134 (296)
48 TIGR02795 tol_pal_ybgF tol-pal 72.2 13 0.00028 25.6 5.1 21 2-22 53-73 (119)
49 cd02680 MIT_calpain7_2 MIT: do 71.8 8 0.00017 29.2 4.3 33 2-36 20-57 (75)
50 PF13176 TPR_7: Tetratricopept 70.6 2.3 4.9E-05 26.4 1.0 18 1-18 12-29 (36)
51 PF14853 Fis1_TPR_C: Fis1 C-te 69.2 14 0.0003 26.0 4.8 24 1-24 14-37 (53)
52 smart00386 HAT HAT (Half-A-TPR 69.1 7.5 0.00016 21.6 2.9 24 3-26 2-25 (33)
53 PRK15179 Vi polysaccharide bio 69.1 17 0.00036 36.7 7.1 23 1-23 167-189 (694)
54 PF07720 TPR_3: Tetratricopept 68.9 5.9 0.00013 25.9 2.7 21 1-21 14-36 (36)
55 TIGR00990 3a0801s09 mitochondr 68.8 24 0.00051 33.3 7.6 22 2-23 345-366 (615)
56 PF13525 YfiO: Outer membrane 68.2 34 0.00073 28.1 7.6 26 1-26 55-80 (203)
57 PF13431 TPR_17: Tetratricopep 68.0 5.6 0.00012 24.9 2.4 22 10-31 1-22 (34)
58 PF09976 TPR_21: Tetratricopep 67.8 43 0.00093 25.6 7.7 71 2-72 62-135 (145)
59 PF11349 DUF3151: Protein of u 65.4 2.5 5.4E-05 35.6 0.5 20 164-183 73-92 (129)
60 PRK12370 invasion protein regu 65.0 11 0.00024 35.5 4.7 24 3-26 319-342 (553)
61 PRK11675 LexA regulated protei 64.4 9.1 0.0002 30.3 3.4 64 17-93 25-88 (90)
62 PRK11788 tetratricopeptide rep 63.8 92 0.002 26.5 10.5 20 2-21 228-247 (389)
63 PRK10747 putative protoheme IX 63.1 24 0.00053 31.8 6.3 42 2-43 167-208 (398)
64 TIGR00990 3a0801s09 mitochondr 62.5 33 0.00071 32.4 7.3 15 3-17 309-323 (615)
65 PRK11189 lipoprotein NlpI; Pro 62.5 39 0.00085 29.2 7.3 31 2-32 78-108 (296)
66 PRK14574 hmsH outer membrane p 61.8 27 0.00058 36.0 7.0 26 1-26 115-140 (822)
67 PRK11447 cellulose synthase su 61.7 51 0.0011 34.1 9.0 28 2-29 399-426 (1157)
68 PF03704 BTAD: Bacterial trans 60.7 54 0.0012 24.7 6.9 58 2-71 76-133 (146)
69 PF13374 TPR_10: Tetratricopep 60.5 9.7 0.00021 22.4 2.4 17 1-17 15-31 (42)
70 PRK15174 Vi polysaccharide exp 59.8 15 0.00032 35.8 4.7 27 2-28 124-150 (656)
71 COG4980 GvpP Gas vesicle prote 59.3 95 0.0021 25.6 8.5 36 7-42 15-55 (115)
72 PRK10049 pgaA outer membrane p 59.0 16 0.00036 35.9 4.9 30 1-30 129-158 (765)
73 PRK11447 cellulose synthase su 59.0 16 0.00035 37.7 5.0 43 1-43 616-658 (1157)
74 KOG1125 TPR repeat-containing 58.8 6.5 0.00014 39.7 2.1 21 2-22 478-498 (579)
75 PRK10866 outer membrane biogen 58.0 7.8 0.00017 33.4 2.2 26 1-26 82-107 (243)
76 PF03962 Mnd1: Mnd1 family; I 57.0 1E+02 0.0022 26.3 8.7 67 7-75 88-155 (188)
77 TIGR03302 OM_YfiO outer membra 56.9 30 0.00065 27.7 5.3 33 2-34 47-79 (235)
78 cd07619 BAR_Rich2 The Bin/Amph 56.8 49 0.0011 30.0 7.1 32 58-89 165-201 (248)
79 KOG3677 RNA polymerase I-assoc 56.8 23 0.0005 35.6 5.4 17 1-17 285-301 (525)
80 PRK12370 invasion protein regu 56.6 53 0.0012 31.1 7.6 25 2-26 352-376 (553)
81 PF10241 KxDL: Uncharacterized 56.6 38 0.00082 25.7 5.5 56 16-71 26-87 (88)
82 PF02561 FliS: Flagellar prote 55.0 62 0.0013 25.1 6.6 46 49-94 70-117 (122)
83 TIGR03302 OM_YfiO outer membra 54.9 39 0.00085 27.0 5.6 32 2-33 129-160 (235)
84 KOG1126 DNA-binding cell divis 54.8 19 0.00042 36.9 4.7 43 2-44 503-545 (638)
85 PF01024 Colicin: Colicin pore 54.7 47 0.001 29.3 6.5 66 3-85 52-119 (187)
86 PF13512 TPR_18: Tetratricopep 54.4 7.9 0.00017 32.4 1.7 37 2-38 61-99 (142)
87 PRK09782 bacteriophage N4 rece 54.2 26 0.00057 36.7 5.6 42 2-43 691-732 (987)
88 PF08134 cIII: cIII protein fa 54.0 21 0.00046 25.4 3.5 20 17-36 15-34 (44)
89 TIGR02917 PEP_TPR_lipo putativ 53.5 95 0.0021 28.1 8.2 21 2-22 717-737 (899)
90 PF11262 Tho2: Transcription f 53.3 1.2E+02 0.0026 27.4 8.9 42 2-43 27-74 (298)
91 COG4235 Cytochrome c biogenesi 52.9 12 0.00026 34.7 2.7 26 2-27 170-195 (287)
92 PRK09782 bacteriophage N4 rece 52.6 49 0.0011 34.8 7.2 25 2-26 623-647 (987)
93 PRK15174 Vi polysaccharide exp 51.9 50 0.0011 32.2 6.8 26 2-27 226-251 (656)
94 PF01221 Dynein_light: Dynein 51.3 26 0.00056 26.0 3.8 13 58-70 40-52 (89)
95 KOG2076 RNA polymerase III tra 50.8 57 0.0012 34.8 7.4 50 2-52 463-513 (895)
96 PF08424 NRDE-2: NRDE-2, neces 50.2 87 0.0019 28.0 7.6 24 4-27 47-70 (321)
97 smart00297 BROMO bromo domain. 47.8 58 0.0012 23.6 5.1 35 4-38 69-103 (107)
98 PRK10803 tol-pal system protei 46.8 30 0.00066 30.5 4.2 38 2-39 157-194 (263)
99 PTZ00059 dynein light chain; P 46.1 35 0.00075 25.9 3.8 12 59-70 42-53 (90)
100 KOG1648 Uncharacterized conser 46.0 25 0.00055 36.3 3.9 46 6-53 67-112 (813)
101 PRK15179 Vi polysaccharide bio 45.3 43 0.00094 33.9 5.4 23 2-24 134-156 (694)
102 PF12895 Apc3: Anaphase-promot 45.0 1E+02 0.0022 21.3 6.1 20 2-21 3-22 (84)
103 PF12895 Apc3: Anaphase-promot 44.8 24 0.00053 24.4 2.7 25 1-26 38-62 (84)
104 KOG2002 TPR-containing nuclear 44.8 1E+02 0.0022 33.5 8.2 48 1-54 212-259 (1018)
105 PRK10803 tol-pal system protei 44.8 46 0.00099 29.5 5.0 34 2-35 194-227 (263)
106 cd05804 StaR_like StaR_like; a 44.3 53 0.0011 27.6 5.0 26 2-27 128-153 (355)
107 KOG4642 Chaperone-dependent E3 43.9 37 0.0008 31.9 4.4 42 2-43 24-72 (284)
108 cd02656 MIT MIT: domain contai 43.5 1E+02 0.0023 21.7 5.8 17 4-20 29-45 (75)
109 cd04369 Bromodomain Bromodomai 42.5 76 0.0016 21.7 4.8 34 4-37 64-97 (99)
110 cd02683 MIT_1 MIT: domain cont 42.1 21 0.00046 26.5 2.1 18 4-21 29-46 (77)
111 cd04759 Rib_hydrolase ADP-ribo 41.9 39 0.00085 30.8 4.1 71 136-215 130-207 (242)
112 PF06075 DUF936: Plant protein 40.8 63 0.0014 32.5 5.7 69 3-89 505-575 (579)
113 cd02683 MIT_1 MIT: domain cont 39.6 1.5E+02 0.0032 22.0 6.3 16 2-17 20-35 (77)
114 KOG0739 AAA+-type ATPase [Post 39.6 93 0.002 30.7 6.5 16 2-17 24-39 (439)
115 KOG0553 TPR repeat-containing 39.4 23 0.00049 33.4 2.3 22 2-23 95-116 (304)
116 PF10255 Paf67: RNA polymerase 39.1 76 0.0016 30.6 5.8 17 1-17 177-193 (404)
117 PRK10049 pgaA outer membrane p 39.0 1.1E+02 0.0025 30.2 7.1 25 2-26 63-87 (765)
118 TIGR02606 antidote_CC2985 puta 37.9 26 0.00056 25.6 2.0 36 50-95 3-40 (69)
119 PF04229 GrpB: GrpB protein; 37.8 63 0.0014 26.5 4.4 44 45-88 122-167 (167)
120 KOG1126 DNA-binding cell divis 37.7 1.4E+02 0.003 30.9 7.6 49 1-49 536-585 (638)
121 KOG4626 O-linked N-acetylgluco 37.7 21 0.00046 37.7 2.0 25 1-25 265-289 (966)
122 PLN02789 farnesyltranstransfer 37.3 27 0.00059 31.6 2.4 24 2-25 51-74 (320)
123 PF04733 Coatomer_E: Coatomer 37.2 44 0.00095 29.8 3.7 35 1-35 214-248 (290)
124 PRK15363 pathogenicity island 37.1 99 0.0022 26.3 5.6 34 2-35 49-82 (157)
125 cd02684 MIT_2 MIT: domain cont 36.6 29 0.00063 25.6 2.1 16 2-17 20-35 (75)
126 KOG0016 Enoyl-CoA hydratase/is 36.5 1.1E+02 0.0025 28.5 6.3 71 11-82 180-261 (266)
127 cd02681 MIT_calpain7_1 MIT: do 36.1 30 0.00064 26.0 2.1 14 3-16 21-34 (76)
128 PF12569 NARP1: NMDA receptor- 35.6 1.1E+02 0.0024 30.0 6.4 32 1-32 51-82 (517)
129 KOG2759 Vacuolar H+-ATPase V1 34.6 1.4E+02 0.003 29.8 6.8 75 15-90 227-324 (442)
130 COG2956 Predicted N-acetylgluc 34.6 1.7E+02 0.0038 28.7 7.4 80 3-88 195-279 (389)
131 PF13348 Y_phosphatase3C: Tyro 34.4 50 0.0011 22.8 2.9 32 42-73 15-47 (68)
132 KOG1173 Anaphase-promoting com 34.4 33 0.00072 35.1 2.7 31 2-32 469-499 (611)
133 cd02682 MIT_AAA_Arch MIT: doma 34.4 1.1E+02 0.0024 23.2 5.0 21 3-23 21-48 (75)
134 COG4396 Mu-like prophage host- 33.9 2.1E+02 0.0045 25.3 7.1 27 16-42 11-38 (170)
135 KOG0624 dsRNA-activated protei 33.7 1.3E+02 0.0029 30.1 6.5 30 1-30 119-151 (504)
136 PF10516 SHNi-TPR: SHNi-TPR; 33.4 39 0.00084 22.5 2.1 16 2-17 15-30 (38)
137 KOG2376 Signal recognition par 33.0 1.8E+02 0.004 30.2 7.6 28 2-29 124-151 (652)
138 cd05515 Bromo_polybromo_V Brom 32.5 1.2E+02 0.0026 23.2 4.9 36 5-40 69-104 (105)
139 KOG1156 N-terminal acetyltrans 32.4 2.2E+02 0.0048 29.9 8.1 36 2-37 89-124 (700)
140 PF11712 Vma12: Endoplasmic re 32.0 1.8E+02 0.0038 23.4 6.1 65 21-92 21-97 (142)
141 cd01040 globin Globins are hem 31.6 2E+02 0.0044 20.8 7.9 25 5-29 21-45 (140)
142 KOG1760 Molecular chaperone Pr 31.5 1.4E+02 0.0031 25.4 5.6 42 30-71 82-125 (131)
143 cd05520 Bromo_polybromo_III Br 30.3 1E+02 0.0023 23.7 4.3 34 6-39 70-103 (103)
144 PRK03333 coaE dephospho-CoA ki 30.1 1.1E+02 0.0025 28.4 5.3 50 45-95 339-390 (395)
145 PRK02079 pyrroloquinoline quin 29.8 49 0.0011 25.4 2.4 38 50-87 44-82 (88)
146 cd05518 Bromo_polybromo_IV Bro 29.4 1.1E+02 0.0024 23.6 4.3 34 5-38 69-102 (103)
147 KOG2076 RNA polymerase III tra 29.2 3.9E+02 0.0085 28.9 9.4 62 2-63 221-286 (895)
148 PF13747 DUF4164: Domain of un 29.1 2.7E+02 0.0058 21.4 8.1 61 2-71 11-79 (89)
149 PF03693 RHH_2: Uncharacterise 29.1 58 0.0013 24.5 2.7 35 50-94 6-42 (80)
150 cd05804 StaR_like StaR_like; a 28.9 60 0.0013 27.3 3.0 24 2-25 57-80 (355)
151 PLN02789 farnesyltranstransfer 28.8 51 0.0011 29.9 2.8 23 2-24 156-178 (320)
152 cd09244 BRO1_Rhophilin Protein 28.8 4.4E+02 0.0096 24.8 8.9 50 39-91 259-310 (350)
153 COG4922 Uncharacterized protei 28.2 22 0.00048 30.1 0.3 18 159-176 78-95 (129)
154 KOG2264 Exostosin EXT1L [Signa 28.1 4.4E+02 0.0096 28.1 9.4 100 28-140 84-189 (907)
155 PF02259 FAT: FAT domain; Int 28.0 3.6E+02 0.0077 22.6 7.4 26 2-27 272-297 (352)
156 KOG1129 TPR repeat-containing 27.7 36 0.00078 33.7 1.7 22 1-22 303-324 (478)
157 PF06552 TOM20_plant: Plant sp 27.5 4.4E+02 0.0096 23.4 8.8 24 3-26 50-73 (186)
158 KOG1125 TPR repeat-containing 27.1 45 0.00097 34.0 2.3 27 2-28 444-470 (579)
159 KOG0548 Molecular co-chaperone 27.1 92 0.002 31.6 4.4 115 2-136 16-134 (539)
160 PF06320 GCN5L1: GCN5-like pro 26.8 3.4E+02 0.0074 21.9 8.2 36 55-91 75-110 (121)
161 PRK10328 DNA binding protein, 26.7 27 0.00058 29.0 0.5 9 164-172 107-115 (134)
162 PRK15331 chaperone protein Sic 26.7 2E+02 0.0044 24.8 5.8 45 2-46 51-95 (165)
163 PF06120 Phage_HK97_TLTM: Tail 26.4 2.7E+02 0.0059 26.1 7.0 63 4-66 40-113 (301)
164 KOG0543 FKBP-type peptidyl-pro 26.4 3.1E+02 0.0068 26.9 7.6 77 1-79 270-354 (397)
165 PF12685 SpoIIIAH: SpoIIIAH-li 26.3 1.9E+02 0.004 24.4 5.5 20 32-51 91-110 (196)
166 PRK14574 hmsH outer membrane p 25.8 1.8E+02 0.0039 30.3 6.2 29 1-29 182-210 (822)
167 PF06952 PsiA: PsiA protein; 25.7 22 0.00048 32.5 -0.1 19 119-137 150-168 (238)
168 PF00901 Orbi_VP5: Orbivirus o 25.6 4E+02 0.0087 27.1 8.4 49 2-56 143-197 (508)
169 cd02681 MIT_calpain7_1 MIT: do 25.5 2.9E+02 0.0064 20.7 6.0 16 3-18 28-43 (76)
170 COG5010 TadD Flp pilus assembl 25.4 1.3E+02 0.0029 27.7 4.8 24 2-25 114-137 (257)
171 smart00528 HNS Domain in histo 25.3 30 0.00065 24.1 0.5 13 160-172 11-27 (46)
172 PRK00034 gatC aspartyl/glutamy 25.1 81 0.0018 23.3 2.8 20 27-46 7-26 (95)
173 COG0712 AtpH F0F1-type ATP syn 24.8 3.9E+02 0.0085 22.6 7.2 67 7-79 12-80 (178)
174 TIGR00408 proS_fam_I prolyl-tR 24.6 1.7E+02 0.0036 28.1 5.4 34 44-77 393-434 (472)
175 COG3063 PilF Tfp pilus assembl 24.3 99 0.0021 28.7 3.7 42 1-42 152-193 (250)
176 PF09177 Syntaxin-6_N: Syntaxi 24.2 3E+02 0.0066 20.6 5.8 45 22-72 8-52 (97)
177 PRK10947 global DNA-binding tr 24.1 32 0.00069 28.6 0.5 9 164-172 107-115 (135)
178 PF12569 NARP1: NMDA receptor- 24.0 4.4E+02 0.0096 26.0 8.3 23 2-24 208-230 (517)
179 PF03556 Cullin_binding: Culli 24.0 1.3E+02 0.0028 24.0 3.9 39 53-94 4-52 (117)
180 COG3947 Response regulator con 23.7 2E+02 0.0043 28.0 5.7 56 2-69 293-348 (361)
181 KOG1070 rRNA processing protei 23.5 2.5E+02 0.0055 32.2 7.1 74 2-79 1544-1624(1710)
182 PF08717 nsp8: nsp8 replicase; 23.3 2.8E+02 0.0061 25.1 6.3 21 3-23 14-34 (199)
183 KOG2460 Signal recognition par 22.9 5.3E+02 0.012 26.8 8.7 70 78-148 222-292 (593)
184 PF12688 TPR_5: Tetratrico pep 22.8 94 0.002 24.7 2.9 19 2-20 52-70 (120)
185 cd02678 MIT_VPS4 MIT: domain c 22.8 3E+02 0.0064 19.8 6.2 17 4-20 29-45 (75)
186 cd05506 Bromo_plant1 Bromodoma 22.8 2.2E+02 0.0048 21.0 4.8 32 5-36 65-96 (99)
187 PF04111 APG6: Autophagy prote 22.7 5.9E+02 0.013 23.3 8.4 56 9-64 26-87 (314)
188 cd05130 RasGAP_Neurofibromin N 22.4 2.4E+02 0.0052 26.2 5.9 94 51-174 220-316 (329)
189 cd00169 Chemokine Chemokine: s 22.1 96 0.0021 21.3 2.5 35 176-213 12-48 (59)
190 PRK10153 DNA-binding transcrip 22.0 1.6E+02 0.0036 28.6 5.0 21 2-23 434-454 (517)
191 PF08580 KAR9: Yeast cortical 22.0 5.2E+02 0.011 26.6 8.6 85 2-88 60-157 (683)
192 TIGR02833 spore_III_AB stage I 21.9 2.3E+02 0.0051 23.6 5.2 29 36-72 22-50 (170)
193 PRK08661 prolyl-tRNA synthetas 21.8 1.9E+02 0.004 27.7 5.2 35 44-78 399-441 (477)
194 KOG1464 COP9 signalosome, subu 21.7 4.4E+02 0.0096 26.0 7.6 39 3-43 42-80 (440)
195 PRK14903 16S rRNA methyltransf 21.7 55 0.0012 30.7 1.6 24 162-185 402-425 (431)
196 KOG2911 Uncharacterized conser 21.6 5.1E+02 0.011 25.9 8.2 43 44-87 299-352 (439)
197 PRK09631 DNA topoisomerase IV 21.3 2.2E+02 0.0049 29.1 5.9 46 24-70 394-447 (635)
198 cd05499 Bromo_BDF1_2_II Bromod 21.3 2.4E+02 0.0053 21.1 4.8 33 5-37 68-100 (102)
199 KOG4626 O-linked N-acetylgluco 21.2 2.8E+02 0.006 29.9 6.6 17 85-101 472-488 (966)
200 PF13525 YfiO: Outer membrane 21.1 4.7E+02 0.01 21.4 8.9 42 3-45 105-146 (203)
201 KOG4321 Predicted phosphate ac 21.0 42 0.00091 30.7 0.7 23 119-141 88-111 (279)
202 PF07200 Mod_r: Modifier of ru 21.0 4.2E+02 0.0091 20.8 7.6 37 53-89 53-89 (150)
203 cd05498 Bromo_Brdt_II_like Bro 20.8 2.6E+02 0.0055 20.8 4.8 32 5-36 68-99 (102)
204 KOG0123 Polyadenylate-binding 20.1 49 0.0011 31.0 1.0 12 179-190 115-126 (369)
205 TIGR00865 bcl-2 Apoptosis regu 20.1 6.2E+02 0.013 22.5 8.6 87 18-105 61-176 (213)
206 PRK08307 stage III sporulation 20.0 2.5E+02 0.0054 23.5 5.0 29 36-72 23-51 (171)
No 1
>KOG2449 consensus Methylmalonate semialdehyde dehydrogenase [Amino acid transport and metabolism; Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-43 Score=292.54 Aligned_cols=148 Identities=27% Similarity=0.388 Sum_probs=145.6
Q ss_pred HHHHHHHhhhhccCCCCceEeeecCCCCccccccCceecccccccCCcchhhhHHHHHhhhhhhhhhhhhhc-ccccccc
Q 026807 83 ETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQYADDSFSSAACLV-APKSIIS 161 (233)
Q Consensus 83 e~~e~Avk~whe~~kvd~~V~FLld~~kt~tekyap~VnidkAFeSP~th~~Cf~fLRqYAeesfs~Aac~v-~pKsiIs 161 (233)
+||++++|+||++.++|++|||+++.++|+||+|+|-|+||++|+||.+|++|+.||||||+.+|++++|++ .|+..++
T Consensus 2 ~v~vg~aksW~~~lve~ak~l~v~~g~kp~tD~~a~~~ri~~liqS~~~~~~r~~yl~~ya~~~f~~~tiLsvtP~ms~y 81 (157)
T KOG2449|consen 2 AVMVGAAKSWHPTLVEDAKVLKVNAGEKPQTDKYAPKVRIDKLIQSEDPLDGRFIYLPGYAEGNFVGPTILSVTPNMSCY 81 (157)
T ss_pred ceEechhhhhhHHHHHhhhheEeccCCCCCccchhHHHHHHHHhcCcCccCCceEEeeccccCCcccceEEEecCCccee
Confidence 689999999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred cccccccCcccccccCCCcceeEEeccccceeeeeeecccccccccccCccccccchhccchHHHhhhc
Q 026807 162 YPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEVLDISAHEVFPRLFKEKL 230 (233)
Q Consensus 162 YPQVWkgqGsRkWk~~q~dGfFVQ~Esp~lRk~WFips~~Ekg~tlcr~pe~ldi~~hev~pr~fke~~ 230 (233)
|||+|+|.|+|+|+.+-.||+|||+++|.+|++||+.|+.++||++||+|+.+||++|+.+|++|++.-
T Consensus 82 keeI~gpVlv~l~~~tldd~I~Iin~nPygn~t~i~Tsn~atark~~~e~~a~qig~~~~ip~ilk~~s 150 (157)
T KOG2449|consen 82 KEEIFGPVLVRLETETLDDAIFIINNNPYGNGTAIFTSNGATARKFCHEPDAGQIGANVPIPVILKMFS 150 (157)
T ss_pred HhhhhcceEEEEeecCCCceeEEEecCCCCceeEEEecCcHHhhhhhcCCCccceecccccccccccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999863
No 2
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0021 Score=63.10 Aligned_cols=35 Identities=37% Similarity=0.618 Sum_probs=33.5
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 35 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~ 35 (233)
|.+|+.|+.+||.||++||+++|++.+|+|..+..
T Consensus 439 mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 439 MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999875
No 3
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.25 E-value=0.0042 Score=37.03 Aligned_cols=21 Identities=33% Similarity=0.759 Sum_probs=18.3
Q ss_pred ChhhHHHHHHHHHHHhhCCCc
Q 026807 1 MEQYDDALSAFQTALQYNPQS 21 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs 21 (233)
|.+|++|+..|+.||++||++
T Consensus 14 ~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 14 LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp TT-HHHHHHHHHHHHHHSTTH
T ss_pred hCCchHHHHHHHHHHHHCcCC
Confidence 578999999999999999974
No 4
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.99 E-value=0.051 Score=35.75 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=26.0
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKR 30 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkr 30 (233)
..+|++|+..|+.+++.+|++.++...+-+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 33 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQ 33 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 368999999999999999999999875443
No 5
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.60 E-value=0.014 Score=34.18 Aligned_cols=21 Identities=29% Similarity=0.752 Sum_probs=18.3
Q ss_pred ChhhHHHHHHHHHHHhhCCCc
Q 026807 1 MEQYDDALSAFQTALQYNPQS 21 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs 21 (233)
+.+|++|+..|+.|++++|++
T Consensus 14 ~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 14 LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp TT-HHHHHHHHHHHHHHSTTS
T ss_pred hCCHHHHHHHHHHHHHHCcCC
Confidence 468999999999999999974
No 6
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.73 E-value=0.046 Score=35.03 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.8
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRK 27 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrK 27 (233)
+.++|+|+..|+.+++.+|++.++-..
T Consensus 14 ~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 14 LGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred cCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 358999999999999999999987654
No 7
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.97 E-value=0.18 Score=33.35 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=24.5
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIK 29 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIk 29 (233)
+.+|++|+..|..|+++||.+.++--.+-
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g 44 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLG 44 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 46899999999999999999988654443
No 8
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.27 E-value=0.08 Score=27.33 Aligned_cols=21 Identities=33% Similarity=0.776 Sum_probs=18.4
Q ss_pred ChhhHHHHHHHHHHHhhCCCc
Q 026807 1 MEQYDDALSAFQTALQYNPQS 21 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs 21 (233)
|.+|++|+..|+.+++.+|.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 14 LGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999998863
No 9
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.81 E-value=0.28 Score=32.29 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 33 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsq 33 (233)
.+|++|+..|+.+++.+|.+.++-.-+-++-.
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~ 42 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILY 42 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 57999999999999999999888765544433
No 10
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.19 Score=48.15 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=32.9
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 38 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~k 38 (233)
|-.||+|+..||.|++++|.|.++..-|++|.|=+|+.
T Consensus 304 ~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 304 LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999998887765543
No 11
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.64 E-value=0.65 Score=31.48 Aligned_cols=43 Identities=16% Similarity=0.336 Sum_probs=32.0
Q ss_pred ChhhHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQY----NPQSAEVSRKIKRVSQLAKDKKRAQE 43 (233)
Q Consensus 1 me~y~dAlaafq~Alq~----npqs~EvsrKIkrlsqL~k~kkra~e 43 (233)
+.+|++|+..|+.|++. .+.+.+++.-+-.|+.+.....+..+
T Consensus 18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 64 (78)
T PF13424_consen 18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEE 64 (78)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 46899999999999965 34555677777778777777766665
No 12
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.34 E-value=0.11 Score=30.60 Aligned_cols=20 Identities=40% Similarity=0.828 Sum_probs=18.1
Q ss_pred ChhhHHHHHHHHHHHhhCCC
Q 026807 1 MEQYDDALSAFQTALQYNPQ 20 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npq 20 (233)
+.+|++|+..|+.|++++|.
T Consensus 14 ~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 14 LGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp TTSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhhCCC
Confidence 46899999999999999994
No 13
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.15 E-value=0.16 Score=33.46 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=18.2
Q ss_pred ChhhHHHHHHHHHHHhhCCCcH
Q 026807 1 MEQYDDALSAFQTALQYNPQSA 22 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~ 22 (233)
+.+|++|+..|+.+++.+|.+.
T Consensus 44 ~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 44 QGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-H
T ss_pred cCCHHHHHHHHHHHHHHCcCCC
Confidence 4689999999999999999874
No 14
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.84 E-value=1.8 Score=26.17 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=22.1
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRK 27 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrK 27 (233)
+.+|++|+..|+.+++.+|.+..+-..
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~ 39 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYN 39 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHH
Confidence 367999999999999999998755433
No 15
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.13 E-value=1.3 Score=26.87 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 41 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra 41 (233)
++|++|+..|+.+++.+|.+.++-..+-.+-....+-..+
T Consensus 48 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 87 (100)
T cd00189 48 GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA 87 (100)
T ss_pred HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHH
Confidence 5789999999999999999886655444444433333333
No 16
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.17 E-value=0.74 Score=42.40 Aligned_cols=39 Identities=26% Similarity=0.562 Sum_probs=36.1
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 39 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kk 39 (233)
||+||+||.-|...|+..|-..|.-++|.||..++.++.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ern 219 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERN 219 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHH
Confidence 789999999999999999999999999999998887654
No 17
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=89.95 E-value=3.2 Score=32.56 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 37 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~ 37 (233)
.+|++|+..|+.|++.+|...+.+.-.-.|..+...
T Consensus 49 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 84 (172)
T PRK02603 49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS 84 (172)
T ss_pred CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 579999999999999888765544444455555543
No 18
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=88.62 E-value=0.83 Score=41.02 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVS 25 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Evs 25 (233)
.+|++|+..|+.|+++||.+.+.-
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHH
Confidence 466777777777777777666653
No 19
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=88.24 E-value=0.78 Score=30.47 Aligned_cols=23 Identities=35% Similarity=0.767 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEV 24 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Ev 24 (233)
++|++|+.+++.+++.+|.+...
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~~~~ 31 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDDPEL 31 (73)
T ss_pred CCHHHHHHHHHHHHHhCcccchh
Confidence 46777777777777777776654
No 20
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=86.94 E-value=2.2 Score=33.32 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=25.9
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 34 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL 34 (233)
+.+|++|+..|+.|++.||.+.++-...-.+-+.
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 70 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM 70 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 3589999999999999999998886554443333
No 21
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.60 E-value=0.57 Score=26.87 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHhhCCCc
Q 026807 2 EQYDDALSAFQTALQYNPQS 21 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs 21 (233)
.++++|+..|+..+...|+|
T Consensus 14 g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 14 GDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp CHHHHHHHHHHHHHHHSTTS
T ss_pred cCHHHHHHHHHHHHHHCcCC
Confidence 47999999999999999986
No 22
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=86.27 E-value=8.7 Score=27.85 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIK 29 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIk 29 (233)
.+|++|+..|+.+++.+|.+.++-..+-
T Consensus 31 ~~~~~A~~~~~~~~~~~p~~~~~~~~la 58 (135)
T TIGR02552 31 GRYDEALKLFQLLAAYDPYNSRYWLGLA 58 (135)
T ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5799999999999999999988765443
No 23
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=86.06 E-value=4.7 Score=31.65 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.4
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVS 25 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~Evs 25 (233)
+.+|++|+..|+.|++.+|.+...-
T Consensus 85 ~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 85 NGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHH
Confidence 4689999999999999999886553
No 24
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.02 E-value=1 Score=42.04 Aligned_cols=39 Identities=23% Similarity=0.514 Sum_probs=34.3
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 39 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kk 39 (233)
+.+|++|+.+|+.||.+.|.+..+-+-+|...|..++.+
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 358999999999999999999988888888888888776
No 25
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=84.87 E-value=1.3 Score=43.52 Aligned_cols=33 Identities=30% Similarity=0.591 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 34 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL 34 (233)
|-||+||.-||+|+++||.++++-.-|.+-..|
T Consensus 355 E~YD~AI~dye~A~e~n~sn~~~reGle~Akrl 387 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNTRAREGLERAKRL 387 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 579999999999999999999886655444333
No 26
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=84.73 E-value=3.4 Score=27.40 Aligned_cols=25 Identities=24% Similarity=0.632 Sum_probs=21.4
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVS 25 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~Evs 25 (233)
+.+|++|+..|+.+++.+|.+..+.
T Consensus 42 ~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 42 LGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred hccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4689999999999999999776654
No 27
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=84.50 E-value=8 Score=30.04 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=30.3
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 43 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~e 43 (233)
+.+|++|+..|+.|++.+|.+...+.-.-.|..+.....+..+
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~e 90 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTK 90 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHH
Confidence 3679999999999999988766555445556555555554444
No 28
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=83.99 E-value=2.3 Score=41.55 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=21.9
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEV 24 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~Ev 24 (233)
+.+||+|++.|+.||++||.+.|.
T Consensus 88 lGryeEAIa~f~rALeL~Pd~aeA 111 (453)
T PLN03098 88 KGRVKDALAQFETALELNPNPDEA 111 (453)
T ss_pred cCCHHHHHHHHHHHHhhCCCchHH
Confidence 579999999999999999999874
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=83.72 E-value=9.1 Score=28.23 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKI 28 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKI 28 (233)
.+|++|+..|+.+++.+|.+.++...+
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~l 71 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLAL 71 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 578999999999999999887655443
No 30
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=83.24 E-value=5.8 Score=32.87 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=20.9
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKR 30 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkr 30 (233)
+.+|++|+.+|+.|++++|.+.++---+-.
T Consensus 86 ~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 86 RNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456777777777777777777776554433
No 31
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=82.77 E-value=2.1 Score=33.39 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKI 28 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKI 28 (233)
.+|++|+..|+.|++.||++.+.--.+
T Consensus 72 g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 72 KEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred hhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 589999999999999999998765443
No 32
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=82.19 E-value=2.7 Score=30.49 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=31.0
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 42 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~ 42 (233)
+.+|++|+..|+.+++.+|.+.++--.+-.+-...++..+|.
T Consensus 64 ~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 105 (135)
T TIGR02552 64 LKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESAL 105 (135)
T ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 357999999999999999999888766555544444444443
No 33
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=78.80 E-value=2.1 Score=28.02 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKR 30 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkr 30 (233)
.+|++|...++.++..+|.+.++..-+.+
T Consensus 39 g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 39 GQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp T-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 57999999999999999998887665444
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=78.08 E-value=4.2 Score=33.84 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRK 27 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrK 27 (233)
.++++|+..|+.||+.+|.+.++-..
T Consensus 160 G~~~~A~~~~~~al~~~P~~~~~~~~ 185 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPDDPDARNA 185 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 46899999999999999999998544
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=77.50 E-value=18 Score=30.67 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHhhCCCcH
Q 026807 3 QYDDALSAFQTALQYNPQSA 22 (233)
Q Consensus 3 ~y~dAlaafq~Alq~npqs~ 22 (233)
+|++|+..|+.+++.+|.+.
T Consensus 195 ~~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 195 DLDAARALLKKALAADPQCV 214 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCH
Confidence 34444444444444444443
No 36
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=77.46 E-value=31 Score=26.74 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=24.7
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRV 31 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrl 31 (233)
+.+|++|+..|+.|++.+|.+.+....+-.+
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 3689999999999999999998765544333
No 37
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.38 E-value=7.5 Score=36.44 Aligned_cols=62 Identities=27% Similarity=0.577 Sum_probs=37.8
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhcchhhhhHh
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV 77 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~even~rsnvd~ak~L~~lk~em~~~~G~~e~~k~~ 77 (233)
+++|+||+.+|.--|+-||-++ |.+| | +|+-.|.+-+-++++|. +-.-|+.| ++|.|.|-.+
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~-v~~K-R---KlAilka~GK~l~aIk~---ln~YL~~F-------~~D~EAW~eL 160 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDT-VIRK-R---KLAILKAQGKNLEAIKE---LNEYLDKF-------MNDQEAWHEL 160 (289)
T ss_pred hhchhhHHHHHHHHhccCcchh-HHHH-H---HHHHHHHcCCcHHHHHH---HHHHHHHh-------cCcHHHHHHH
Confidence 4789999999999999998776 4555 2 33444444443344433 22223333 4677766554
No 38
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=76.91 E-value=6.2 Score=32.71 Aligned_cols=30 Identities=23% Similarity=0.301 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRV 31 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrl 31 (233)
+++++++.+++++|+.||++.+.-..+-++
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~ 82 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEY 82 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 567999999999999999999965554433
No 39
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=76.61 E-value=3 Score=41.65 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 026807 3 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 33 (233)
Q Consensus 3 ~y~dAlaafq~Alq~npqs~EvsrKIkrlsq 33 (233)
-|+||++-|++||.+||||.---+-+.+|.+
T Consensus 486 e~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 486 EPQKAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 5899999999999999999866655555543
No 40
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=76.34 E-value=14 Score=33.31 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSR 26 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Evsr 26 (233)
.+|++|+..|+.||+.+|++.++-.
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~ 40 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYA 40 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5899999999999999999987653
No 41
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=75.68 E-value=6.6 Score=27.07 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHhhCCCcH
Q 026807 2 EQYDDALSAFQTALQYNPQSA 22 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~ 22 (233)
.+|++|+..|+.+++.+|.+.
T Consensus 16 ~~~~~A~~~~~~~~~~~~~~~ 36 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYPKST 36 (119)
T ss_pred CCHHHHHHHHHHHHHHCCCcc
Confidence 589999999999999999874
No 42
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=75.61 E-value=18 Score=38.07 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=31.9
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 43 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~e 43 (233)
|.++++|.++|+.+|++||.+.++...+--.=.+. +-.+|.+
T Consensus 129 ~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 129 LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 67899999999999999999999988775433222 4444444
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=75.52 E-value=31 Score=31.09 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 43 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~e 43 (233)
.+|++|++.++.+++.+|++..|.+-.-.+..-.++-..+.+
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~ 208 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDD 208 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 579999999999999999999988777666666666655554
No 44
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=75.14 E-value=2.2 Score=36.16 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=21.6
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVS 25 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~Evs 25 (233)
|.+|++||.+|+.|++++|.+.+-.
T Consensus 82 ~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 82 QKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HhhHHHHHHHHHHHHhcCCCCchHH
Confidence 4689999999999999999887654
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=74.31 E-value=32 Score=25.33 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSR 26 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Evsr 26 (233)
.+|++|+..|+.+++.+|++.+.-.
T Consensus 149 g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQRPESLL 173 (234)
T ss_pred CCHHHHHHHHHHHHHhCcCChHHHH
Confidence 3566677777777776666655443
No 46
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=73.15 E-value=15 Score=32.94 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVS 32 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrls 32 (233)
.++++|+..|+.+++.+|++..+-..+-.+.
T Consensus 784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLY 814 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4677777777777777777766555444333
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=72.91 E-value=6.6 Score=33.95 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEV 24 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Ev 24 (233)
.+|++|+++|+.|+++||.+...
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a 134 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYA 134 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHH
Confidence 45555555555555555555443
No 48
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=72.16 E-value=13 Score=25.63 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHhhCCCcH
Q 026807 2 EQYDDALSAFQTALQYNPQSA 22 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~ 22 (233)
.+|++|+..|+.+++.+|.+.
T Consensus 53 ~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 53 GKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred ccHHHHHHHHHHHHHHCCCCC
Confidence 456677777777776666654
No 49
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.83 E-value=8 Score=29.23 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQY-----NPQSAEVSRKIKRVSQLAK 36 (233)
Q Consensus 2 e~y~dAlaafq~Alq~-----npqs~EvsrKIkrlsqL~k 36 (233)
.+|++|+..|..|+++ ||.+.+..+ +++.|+++
T Consensus 20 gny~eA~~lY~~ale~~~~ekn~~~k~~i~--~K~~~~a~ 57 (75)
T cd02680 20 GNAEEAIELYTEAVELCINTSNETMDQALQ--TKLKQLAR 57 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHhcChhhHHHHH--HHHHHHHH
Confidence 5799999999999876 555544432 35555554
No 50
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=70.59 E-value=2.3 Score=26.39 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=13.6
Q ss_pred ChhhHHHHHHHHHHHhhC
Q 026807 1 MEQYDDALSAFQTALQYN 18 (233)
Q Consensus 1 me~y~dAlaafq~Alq~n 18 (233)
+.+|++|+..|+.||...
T Consensus 12 ~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 12 QGDYEKAIEYYEQALALA 29 (36)
T ss_dssp CT-HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 457999999999976543
No 51
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.17 E-value=14 Score=25.96 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=19.9
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEV 24 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~Ev 24 (233)
+..|++|+..-..+|+..|.+..+
T Consensus 14 l~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 14 LGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp TT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hhhHHHHHHHHHHHHhhCCCcHHH
Confidence 468999999999999999999765
No 52
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.14 E-value=7.5 Score=21.60 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHhhCCCcHHHHH
Q 026807 3 QYDDALSAFQTALQYNPQSAEVSR 26 (233)
Q Consensus 3 ~y~dAlaafq~Alq~npqs~Evsr 26 (233)
..+.|..+|+.++..+|++.++=.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHH
Confidence 468899999999999998887643
No 53
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=69.10 E-value=17 Score=36.71 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=18.3
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAE 23 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~E 23 (233)
+.+||+|+++|+.|+..||...+
T Consensus 167 ~g~~~~A~~~y~~~~~~~p~~~~ 189 (694)
T PRK15179 167 IGQSEQADACFERLSRQHPEFEN 189 (694)
T ss_pred hcchHHHHHHHHHHHhcCCCcHH
Confidence 35789999999999988887554
No 54
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=68.89 E-value=5.9 Score=25.87 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=15.5
Q ss_pred ChhhHHHHHHHH--HHHhhCCCc
Q 026807 1 MEQYDDALSAFQ--TALQYNPQS 21 (233)
Q Consensus 1 me~y~dAlaafq--~Alq~npqs 21 (233)
+.+|++|+..|| -+.-++|.+
T Consensus 14 ~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 14 KGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HhhHHHHHHHHHHHHHHHhcccC
Confidence 578999999966 888777653
No 55
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=68.77 E-value=24 Score=33.35 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHhhCCCcHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAE 23 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~E 23 (233)
.+|++|+..|+.|++.+|.+.+
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHH
Confidence 3455555555555555555443
No 56
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=68.20 E-value=34 Score=28.08 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=19.7
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSR 26 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~Evsr 26 (233)
+++|++|+..|+.-++.+|+|..+..
T Consensus 55 ~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 55 QGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp TT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 36899999999999999999987643
No 57
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=68.02 E-value=5.6 Score=24.89 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=17.1
Q ss_pred HHHHHHhhCCCcHHHHHHHHHH
Q 026807 10 AFQTALQYNPQSAEVSRKIKRV 31 (233)
Q Consensus 10 afq~Alq~npqs~EvsrKIkrl 31 (233)
.|+.|+++||.+.++-...-.+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~ 22 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANL 22 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHH
Confidence 3899999999999986654443
No 58
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=67.80 E-value=43 Score=25.62 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHhHHHHHHHHHHhhcchh
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVD---MVQHLDEFKSEMSEKYGAEE 72 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~even~rsnvd---~ak~L~~lk~em~~~~G~~e 72 (233)
.+|++|+..|+.++..+|...-...--=||.++.-..+...+...+...+. .......++-++..+-|+.+
T Consensus 62 g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 62 GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHH
Confidence 479999999999999885542211112245555545554444333222211 11223444455555555555
No 59
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=65.43 E-value=2.5 Score=35.62 Aligned_cols=20 Identities=35% Similarity=0.996 Sum_probs=18.3
Q ss_pred cccccCcccccccCCCccee
Q 026807 164 QVWRGQGLRKWRHSQQDGFF 183 (233)
Q Consensus 164 QVWkgqGsRkWk~~q~dGfF 183 (233)
..|||.|-=-|-|..++||+
T Consensus 73 ~GWkG~GPVPw~HePNrGfL 92 (129)
T PF11349_consen 73 NGWKGHGPVPWSHEPNRGFL 92 (129)
T ss_pred CCCCCCCCCCCccCCccHHH
Confidence 36999999999999999985
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=65.03 E-value=11 Score=35.54 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHhhCCCcHHHHH
Q 026807 3 QYDDALSAFQTALQYNPQSAEVSR 26 (233)
Q Consensus 3 ~y~dAlaafq~Alq~npqs~Evsr 26 (233)
++++|+.+++.|++.+|++.+.-.
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~ 342 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALG 342 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHH
Confidence 456666666666666666665533
No 61
>PRK11675 LexA regulated protein; Provisional
Probab=64.36 E-value=9.1 Score=30.34 Aligned_cols=64 Identities=25% Similarity=0.340 Sum_probs=49.0
Q ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhcchhhhhHhHHHHHHHHHHHHhhhh
Q 026807 17 YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWH 93 (233)
Q Consensus 17 ~npqs~EvsrKIkrlsqL~k~kkra~even~rsnvd~ak~L~~lk~em~~~~G~~e~~k~~fsF~ve~~e~Avk~wh 93 (233)
-||=|-++--||.+=+||.||+.+-.-.-.+|=|-|+-..|+.+..+ -|-.- -|+|+.++..|.
T Consensus 25 tnpl~r~~ql~inkrnq~~rdk~~glKRveVKldedl~ekL~eyAe~----~nitR---------SElIr~~I~k~L 88 (90)
T PRK11675 25 TNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNADLVDALNELAEA----RNISR---------SELIEEILMKQL 88 (90)
T ss_pred CCCCChHHHHHhhHHHHHHHHHHcCceeEEEEECHHHHHHHHHHHHH----cCCCH---------HHHHHHHHHHHh
Confidence 58999999999999999999999887766678888888888876655 34433 266777776554
No 62
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=63.80 E-value=92 Score=26.48 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHhhCCCc
Q 026807 2 EQYDDALSAFQTALQYNPQS 21 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs 21 (233)
.+|++|+..|+.+++.+|.+
T Consensus 228 g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 228 GDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred CCHHHHHHHHHHHHHHChhh
Confidence 45677777777777766665
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=63.05 E-value=24 Score=31.78 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 43 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~e 43 (233)
.+|+.|+++++.+++.+|.+.++.+-.-.+-.-.++=..+.+
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 579999999999999999999987776665555554444443
No 64
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=62.53 E-value=33 Score=32.43 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHhh
Q 026807 3 QYDDALSAFQTALQY 17 (233)
Q Consensus 3 ~y~dAlaafq~Alq~ 17 (233)
+|++|+.+|+.|++.
T Consensus 309 ~y~~A~~~~~~al~~ 323 (615)
T TIGR00990 309 SYEEAARAFEKALDL 323 (615)
T ss_pred hHHHHHHHHHHHHhc
Confidence 455555555555544
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=62.49 E-value=39 Score=29.23 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVS 32 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrls 32 (233)
.++++|+..|+.|++.||.+.++-..+-.+-
T Consensus 78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 78 GLRALARNDFSQALALRPDMADAYNYLGIYL 108 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4689999999999999999988765544433
No 66
>PRK14574 hmsH outer membrane protein; Provisional
Probab=61.78 E-value=27 Score=36.00 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=23.8
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSR 26 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~Evsr 26 (233)
+.+|++|+..|+.+++.+|+++++-.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~ 140 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLIS 140 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 46899999999999999999998875
No 67
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=61.74 E-value=51 Score=34.12 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIK 29 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIk 29 (233)
.+|++|+..|+.||+.+|.+.+..+.+-
T Consensus 399 g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 399 KDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3566677777777777766665544433
No 68
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=60.72 E-value=54 Score=24.67 Aligned_cols=58 Identities=22% Similarity=0.441 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhcch
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE 71 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~even~rsnvd~ak~L~~lk~em~~~~G~~ 71 (233)
.+|++|+...+.++..+|-+.+.-+-.=++-.-..+.. .+.+++++++.-|.+.+|-.
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~------------~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRA------------EALRVYERYRRRLREELGIE 133 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HH------------HHHHHHHHHHHHHHHHHS--
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHH------------HHHHHHHHHHHHHHHHhCcC
Confidence 47999999999999999999887665333222111111 23355777777777777764
No 69
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=60.54 E-value=9.7 Score=22.39 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=13.3
Q ss_pred ChhhHHHHHHHHHHHhh
Q 026807 1 MEQYDDALSAFQTALQY 17 (233)
Q Consensus 1 me~y~dAlaafq~Alq~ 17 (233)
+.+|++|+..|+.|+..
T Consensus 15 ~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 15 QGRYEEALELLEEALEI 31 (42)
T ss_dssp CT-HHHHHHHHHHHHHH
T ss_pred hhhcchhhHHHHHHHHH
Confidence 46899999999998864
No 70
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=59.80 E-value=15 Score=35.80 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKI 28 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKI 28 (233)
.+|++|+.+|+.|++.+|++.++..-+
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~l 150 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALH 150 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 467777777777777777777665443
No 71
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=59.27 E-value=95 Score=25.58 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhCCCcHHHHH-----HHHHHHHHHHHHHHHH
Q 026807 7 ALSAFQTALQYNPQSAEVSR-----KIKRVSQLAKDKKRAQ 42 (233)
Q Consensus 7 Alaafq~Alq~npqs~Evsr-----KIkrlsqL~k~kkra~ 42 (233)
++.-+-.||...|.|-...| +++++..|++++...-
T Consensus 15 giiGa~aaLL~AP~sGkelR~~~K~~~~~~~~~ae~~~~~~ 55 (115)
T COG4980 15 GIIGAAAALLFAPKSGKELRKKLKKSGDALFELAEDKGTDI 55 (115)
T ss_pred HHHHHHHHHHhCCcccHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44556789999999999888 4455666666665544
No 72
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=59.05 E-value=16 Score=35.93 Aligned_cols=30 Identities=23% Similarity=0.245 Sum_probs=24.7
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKR 30 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkr 30 (233)
+.++++|+.+|+.|++.+|++.++-...-.
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 357899999999999999999988665433
No 73
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=59.05 E-value=16 Score=37.67 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=30.7
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 43 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~e 43 (233)
+.+|++|+..|+.|++.+|++.++-..+-++-....+-..|.+
T Consensus 616 ~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3579999999999999999998876665555444444444443
No 74
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.75 E-value=6.5 Score=39.73 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHhhCCCcH
Q 026807 2 EQYDDALSAFQTALQYNPQSA 22 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~ 22 (233)
+|++||++||+.|||+-|+=.
T Consensus 478 ~~s~EAIsAY~rALqLqP~yV 498 (579)
T KOG1125|consen 478 NRSEEAISAYNRALQLQPGYV 498 (579)
T ss_pred cccHHHHHHHHHHHhcCCCee
Confidence 477888888888888888743
No 75
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=58.03 E-value=7.8 Score=33.36 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=23.0
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSR 26 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~Evsr 26 (233)
+++|++|+..|+..++.+|++.++--
T Consensus 82 ~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 82 NADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 46899999999999999999988763
No 76
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.00 E-value=1e+02 Score=26.29 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHhHHHHHHHHHHhhcchhhhh
Q 026807 7 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE-VENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 75 (233)
Q Consensus 7 Alaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~e-ven~rsnvd~ak~L~~lk~em~~~~G~~e~~k 75 (233)
.-+..+.+..-.+.+.|-+..+.+|.+|.++.++.+. +++...| |- ..++.++.++..---.++.|-
T Consensus 88 l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~-Dp-~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 88 LEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSEN-DP-EKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555568888888889999988887777654 3322221 11 235555555443333444443
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=56.85 E-value=30 Score=27.66 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 34 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL 34 (233)
.+|++|+..|+.+++.+|.+.....-.-.+.++
T Consensus 47 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~ 79 (235)
T TIGR03302 47 GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYA 79 (235)
T ss_pred CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 478899999999999998886544333333333
No 78
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=56.82 E-value=49 Score=30.04 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=19.8
Q ss_pred HHHHHHHH---Hhhcch--hhhhHhHHHHHHHHHHHH
Q 026807 58 DEFKSEMS---EKYGAE--ECWKHVFSFVVETMETAV 89 (233)
Q Consensus 58 ~~lk~em~---~~~G~~--e~~k~~fsF~ve~~e~Av 89 (233)
++++.||- +++... ....+||+|+-+.+|.+=
T Consensus 165 e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~ 201 (248)
T cd07619 165 DALREEMEEAANRMEICRDQLSADMYSFVAKEIDYAN 201 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 67777772 222211 115689999988888763
No 79
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=56.81 E-value=23 Score=35.56 Aligned_cols=17 Identities=41% Similarity=0.761 Sum_probs=15.2
Q ss_pred ChhhHHHHHHHHHHHhh
Q 026807 1 MEQYDDALSAFQTALQY 17 (233)
Q Consensus 1 me~y~dAlaafq~Alq~ 17 (233)
|.||.||+..|-..|-|
T Consensus 285 mrryadai~~F~niLly 301 (525)
T KOG3677|consen 285 MRRYADAIRVFLNILLY 301 (525)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67999999999888877
No 80
>PRK12370 invasion protein regulator; Provisional
Probab=56.63 E-value=53 Score=31.09 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSR 26 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Evsr 26 (233)
.+|++|+++|+.|++.||.+.++-.
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~ 376 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKY 376 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5799999999999999999998754
No 81
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=56.58 E-value=38 Score=25.66 Aligned_cols=56 Identities=14% Similarity=0.389 Sum_probs=34.7
Q ss_pred hhCCCcHHHHHHH----HHHHHHHHHHHHHHH-HHHhhhhhHHH-HhHHHHHHHHHHhhcch
Q 026807 16 QYNPQSAEVSRKI----KRVSQLAKDKKRAQE-VENIRSNVDMV-QHLDEFKSEMSEKYGAE 71 (233)
Q Consensus 16 q~npqs~EvsrKI----krlsqL~k~kkra~e-ven~rsnvd~a-k~L~~lk~em~~~~G~~ 71 (233)
.+|-.|.++..-+ .||.++..+=+++.+ +..|++++|.. +.+..||+.++.+|..+
T Consensus 26 ~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~~yP~~ 87 (88)
T PF10241_consen 26 RLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAKQYPEE 87 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3444455444332 244444444444444 56678887765 77999999999998754
No 82
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=55.04 E-value=62 Score=25.06 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=21.4
Q ss_pred hhhHHHHhHHHHHHHHHHhhcchhhhh--HhHHHHHHHHHHHHhhhhc
Q 026807 49 SNVDMVQHLDEFKSEMSEKYGAEECWK--HVFSFVVETMETAVKSWHE 94 (233)
Q Consensus 49 snvd~ak~L~~lk~em~~~~G~~e~~k--~~fsF~ve~~e~Avk~whe 94 (233)
.+-++|++|..|=.=|......+..-+ +.+.=++.+++.=-..|++
T Consensus 70 ~g~eia~~L~~lY~y~~~~L~~A~~~~d~~~l~~v~~~l~~l~~aW~e 117 (122)
T PF02561_consen 70 KGGEIADNLFRLYDYMIRQLVQANLKKDPERLDEVIRILEELRDAWEE 117 (122)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 334566777666555443333332222 2333334444444455665
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=54.89 E-value=39 Score=26.99 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 33 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsq 33 (233)
.+|++|+..|+.++..+|.+....+-..++..
T Consensus 129 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~ 160 (235)
T TIGR03302 129 TAAREAFEAFQELIRRYPNSEYAPDAKKRMDY 160 (235)
T ss_pred HHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 46899999999999999999776554444433
No 84
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=54.76 E-value=19 Score=36.85 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 44 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~ev 44 (233)
||||.|+=-||.|++.||+|.-+---|-++-+--+.+..|.+.
T Consensus 503 ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 503 EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHH
Confidence 7999999999999999999988776666655555555555553
No 85
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=54.66 E-value=47 Score=29.34 Aligned_cols=66 Identities=23% Similarity=0.365 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHhHHHHHHHHHHhhcchhhhhHhHHH
Q 026807 3 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS--NVDMVQHLDEFKSEMSEKYGAEECWKHVFSF 80 (233)
Q Consensus 3 ~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~even~rs--nvd~ak~L~~lk~em~~~~G~~e~~k~~fsF 80 (233)
.|||||++|..-.+ ||+. ++++ +|+.- =+-+++| --|||+||..|-+- ||-++..-+....
T Consensus 52 s~~dAl~s~eK~~~-n~~k--------K~~~--kDr~A--I~~Al~s~d~~~~A~nl~k~sK~----fg~~~~~i~~~~~ 114 (187)
T PF01024_consen 52 SVDDALKSFEKYKS-NLNK--------KINA--KDRDA--IVNALESVDAKDMAKNLAKFSKA----FGITGKAIDAYDL 114 (187)
T ss_dssp -HHHHHHHHHHHHT-HTTC--------SS-H--HHHHH--HHHHHHT--HHHHHHHHHHHHGG----GTSTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHh-chhh--------hhhh--ccHHH--HHHHHHHcCHHHHHHHHHHHHHH----hcchHHHhhHHHH
Confidence 58999999988776 7775 2222 22221 1222222 25788888876554 6777665555544
Q ss_pred HHHHH
Q 026807 81 VVETM 85 (233)
Q Consensus 81 ~ve~~ 85 (233)
..++.
T Consensus 115 ~~~~~ 119 (187)
T PF01024_consen 115 REKFK 119 (187)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 86
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=54.42 E-value=7.9 Score=32.36 Aligned_cols=37 Identities=19% Similarity=0.483 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHH--HHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVS--RKIKRVSQLAKDK 38 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Evs--rKIkrlsqL~k~k 38 (233)
.+|++|+++|+.-+++||++..|- -=.+-|++...+.
T Consensus 61 ~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 61 GDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred cCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 479999999999999999998763 3445566665544
No 87
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=54.17 E-value=26 Score=36.73 Aligned_cols=42 Identities=10% Similarity=0.023 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 43 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~e 43 (233)
.+|++|++.|+.|++.+|.+..+.-.+..+-+-.-.-.|+.+
T Consensus 691 Gd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 691 DDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred CCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 456666666666666666666666655555554444445544
No 88
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=54.01 E-value=21 Score=25.42 Aligned_cols=20 Identities=35% Similarity=0.752 Sum_probs=15.7
Q ss_pred hCCCcHHHHHHHHHHHHHHH
Q 026807 17 YNPQSAEVSRKIKRVSQLAK 36 (233)
Q Consensus 17 ~npqs~EvsrKIkrlsqL~k 36 (233)
|-|...|+|++|+||-.-++
T Consensus 15 yYP~ESELskr~rrLIRaa~ 34 (44)
T PF08134_consen 15 YYPTESELSKRIRRLIRAAR 34 (44)
T ss_pred ecCcHHHHHHHHHHHHHHHH
Confidence 56999999999998755443
No 89
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=53.46 E-value=95 Score=28.06 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHhhCCCcH
Q 026807 2 EQYDDALSAFQTALQYNPQSA 22 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~ 22 (233)
.+|++|+..|+.+++.+|.+.
T Consensus 717 g~~~~A~~~~~~~~~~~~~~~ 737 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRAPSSQ 737 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCch
Confidence 467888888888888888773
No 90
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=53.25 E-value=1.2e+02 Score=27.39 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYN------PQSAEVSRKIKRVSQLAKDKKRAQE 43 (233)
Q Consensus 2 e~y~dAlaafq~Alq~n------pqs~EvsrKIkrlsqL~k~kkra~e 43 (233)
++||+.++..+..++.+ ....|..+--..+.+|..|.+++++
T Consensus 27 ~~Y~~ei~~L~~~i~~~~~~~~~~~~k~~~~l~~~i~~L~~E~~~h~~ 74 (298)
T PF11262_consen 27 ELYDEEIERLEKEISQMSRATISKKKKEKERLKNLIDKLPEELKKHQE 74 (298)
T ss_pred HHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999888888772 2223333333334455566666653
No 91
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=52.92 E-value=12 Score=34.70 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRK 27 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrK 27 (233)
.++++|+.+|+.|.++.|.|.|+---
T Consensus 170 ~~~~~A~~AY~~A~rL~g~n~~~~~g 195 (287)
T COG4235 170 GRASDALLAYRNALRLAGDNPEILLG 195 (287)
T ss_pred cchhHHHHHHHHHHHhCCCCHHHHHH
Confidence 57999999999999999999987543
No 92
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=52.57 E-value=49 Score=34.84 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSR 26 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Evsr 26 (233)
.+|++|+.+|+.|++.+|.+.++-.
T Consensus 623 G~~deA~~~l~~AL~l~Pd~~~a~~ 647 (987)
T PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQA 647 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4677777777777777777776543
No 93
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=51.92 E-value=50 Score=32.25 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRK 27 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrK 27 (233)
.+|++|+..|+.|++.+|++.++...
T Consensus 226 g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 226 GKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 46778888888888888877766544
No 94
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=51.34 E-value=26 Score=25.95 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhcc
Q 026807 58 DEFKSEMSEKYGA 70 (233)
Q Consensus 58 ~~lk~em~~~~G~ 70 (233)
+.||.+|-++||.
T Consensus 40 ~~iK~~lD~~yG~ 52 (89)
T PF01221_consen 40 EFIKQELDKKYGP 52 (89)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHhcccCC
Confidence 3456666677774
No 95
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=50.76 E-value=57 Score=34.85 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE-VENIRSNVD 52 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~e-ven~rsnvd 52 (233)
+.||+|+..|..+|+.+|.+..+-.++-.|-|..-....|.| +++ -.|.|
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~-~~~~D 513 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ-IINPD 513 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc-ccCCC
Confidence 579999999999999999999999999999887766666666 444 34677
No 96
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=50.15 E-value=87 Score=27.97 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHH
Q 026807 4 YDDALSAFQTALQYNPQSAEVSRK 27 (233)
Q Consensus 4 y~dAlaafq~Alq~npqs~EvsrK 27 (233)
.|-.|+.|+.||++||.|.++-..
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~ 70 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLG 70 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 466789999999999999887543
No 97
>smart00297 BROMO bromo domain.
Probab=47.76 E-value=58 Score=23.63 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 026807 4 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 38 (233)
Q Consensus 4 y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~k 38 (233)
..|..-.|+-|+.|||.++++....++|.++...+
T Consensus 69 ~~D~~li~~Na~~~n~~~s~~~~~a~~l~~~f~~~ 103 (107)
T smart00297 69 VADVQLMFSNAKTYNGPDSEVYKDAKKLEKFFEKK 103 (107)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 35667789999999999999999999888776553
No 98
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=46.84 E-value=30 Score=30.55 Aligned_cols=38 Identities=29% Similarity=0.312 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 39 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kk 39 (233)
.+|++|+.+|+..++..|.|.....-.-.|.++.-.++
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g 194 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG 194 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC
Confidence 37999999999999999999755555556666554433
No 99
>PTZ00059 dynein light chain; Provisional
Probab=46.11 E-value=35 Score=25.90 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=9.3
Q ss_pred HHHHHHHHhhcc
Q 026807 59 EFKSEMSEKYGA 70 (233)
Q Consensus 59 ~lk~em~~~~G~ 70 (233)
.+|+++-++||.
T Consensus 42 ~IK~~fD~~yg~ 53 (90)
T PTZ00059 42 YIKKEFDKKYNP 53 (90)
T ss_pred HHHHHHHhhcCC
Confidence 457888889986
No 100
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=46.00 E-value=25 Score=36.28 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 026807 6 DALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM 53 (233)
Q Consensus 6 dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~even~rsnvd~ 53 (233)
...+.||+.-+-||.-.+|++|...|.||+.-.|-.+ |++|.|+..
T Consensus 67 k~aaLf~kvgKs~ppA~~v~~kvqeleql~es~k~~~--e~l~~~~~~ 112 (813)
T KOG1648|consen 67 KSAALFQKVGKSNPPAQQVLDKVQELEQLRESRKPSQ--EALRRQGSA 112 (813)
T ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchH--HHHHhhhcc
Confidence 3457899999999999999999999999998877766 777777643
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=45.27 E-value=43 Score=33.86 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEV 24 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Ev 24 (233)
+|+|||+..++.+|+.+|.|.+.
T Consensus 134 ~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 134 QGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred ccHHHHHHHHHHHhhcCCCCHHH
Confidence 45666666666666666666543
No 102
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=45.04 E-value=1e+02 Score=21.28 Aligned_cols=20 Identities=20% Similarity=0.630 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHhhCCCc
Q 026807 2 EQYDDALSAFQTALQYNPQS 21 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs 21 (233)
.+|++|+..|..+++.+|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~ 22 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTN 22 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGT
T ss_pred ccHHHHHHHHHHHHHHCCCC
Confidence 57999999999999999964
No 103
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=44.81 E-value=24 Score=24.40 Aligned_cols=25 Identities=20% Similarity=0.566 Sum_probs=19.2
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSR 26 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~Evsr 26 (233)
+.+|++|+..++. ++++|.+.+..-
T Consensus 38 ~~~y~~A~~~~~~-~~~~~~~~~~~~ 62 (84)
T PF12895_consen 38 QGKYEEAIELLQK-LKLDPSNPDIHY 62 (84)
T ss_dssp TTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred CCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence 4688999999988 888887755544
No 104
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=44.80 E-value=1e+02 Score=33.48 Aligned_cols=48 Identities=21% Similarity=0.343 Sum_probs=30.5
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMV 54 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~even~rsnvd~a 54 (233)
|..-+.|+.+|+.|||+||++...+. -|.--+.-..|.++++-.|.+-
T Consensus 212 l~~~~~a~~a~~ralqLdp~~v~alv------~L~~~~l~~~d~~s~~~~~~ll 259 (1018)
T KOG2002|consen 212 LGMSEKALLAFERALQLDPTCVSALV------ALGEVDLNFNDSDSYKKGVQLL 259 (1018)
T ss_pred ccchhhHHHHHHHHHhcChhhHHHHH------HHHHHHHHccchHHHHHHHHHH
Confidence 45668999999999999996654332 3444444455555555544443
No 105
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.77 E-value=46 Score=29.45 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 35 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~ 35 (233)
.+|++|+..|+.+++..|.|..+..-+-+|....
T Consensus 194 g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~ 227 (263)
T PRK10803 194 GKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIM 227 (263)
T ss_pred CCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHH
Confidence 4799999999999999999877766665555444
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=44.30 E-value=53 Score=27.64 Aligned_cols=26 Identities=38% Similarity=0.432 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRK 27 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrK 27 (233)
.+|++|+..|+.+++.||.+..+..-
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~ 153 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHA 153 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 47999999999999999999766443
No 107
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.90 E-value=37 Score=31.95 Aligned_cols=42 Identities=31% Similarity=0.500 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSA-------EVSRKIKRVSQLAKDKKRAQE 43 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~-------EvsrKIkrlsqL~k~kkra~e 43 (233)
++|++|++.|-.|+-.||-.. +---|.++..+---|-+||++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 589999999999999999873 333457777777788888887
No 108
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=43.48 E-value=1e+02 Score=21.67 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHhhCCC
Q 026807 4 YDDALSAFQTALQYNPQ 20 (233)
Q Consensus 4 y~dAlaafq~Alq~npq 20 (233)
|.+|+..|..+++++|+
T Consensus 29 Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 29 YKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHhccCCC
Confidence 44444444555555655
No 109
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=42.54 E-value=76 Score=21.66 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 026807 4 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 37 (233)
Q Consensus 4 y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~ 37 (233)
++|..-.|+-|..+|+.++++.+.-.+|.++..+
T Consensus 64 ~~D~~li~~Na~~~n~~~~~~~~~a~~l~~~~~~ 97 (99)
T cd04369 64 EADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEK 97 (99)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 3566678899999999998888877777766543
No 110
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.06 E-value=21 Score=26.48 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHhhCCCc
Q 026807 4 YDDALSAFQTALQYNPQS 21 (233)
Q Consensus 4 y~dAlaafq~Alq~npqs 21 (233)
|.+||..|..++++.|+.
T Consensus 29 Y~~aie~l~~~lk~e~d~ 46 (77)
T cd02683 29 YQEGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHHHHhhCCCH
Confidence 444555555555666543
No 111
>cd04759 Rib_hydrolase ADP-ribosyl cyclase (also known as cyclic ADP-ribose hydrolase or CD38) synthesizes the second messenger cyclic-ADP ribose (cADPR), which in turn releases calcium from internal stores. Mammals possess two membrane proteins, CD38 and BST-1/CD157, which exhibit ADP-ribosyl cyclase function, as well as intracellular soluble ADP-ribose cyclases. CD38 is involved in differentiation, adhesion, and cell proliferation, as well as diseases such as AIDS, diabetes, and B-cell chronic lymphocytic leukemia. The extramembrane domain of CD38 acts as a multifunctional enzyme and can synthesize cADPR from NAD+, hydrolyze NAD+, and cADPR to ADPR, as well as catalyze the exchange of the nicotinamide group of NADP+ with nicotinic acid under acidic conditions to yield NAADP+ (nicotinic acid-adenine dinucleotide phosphate), a metabolite involved in Ca2+ mobilization from acidic stores.
Probab=41.89 E-value=39 Score=30.85 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=55.1
Q ss_pred HHHHHhhhhhhhhhhhhhcccccccccccccccCcccccccCCCcceeEEeccccce-------eeeeeecccccccccc
Q 026807 136 FQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLR-------KLWFIPSSNEKGKTLC 208 (233)
Q Consensus 136 f~fLRqYAeesfs~Aac~v~pKsiIsYPQVWkgqGsRkWk~~q~dGfFVQ~Esp~lR-------k~WFips~~Ekg~tlc 208 (233)
+.-.=.-|...||++||-++= -+= .||+.=..=..+++|=.+|.|-|. +||.|+.-.++-+--|
T Consensus 130 ~~~FW~~aS~~fA~~A~G~V~-------VmL--NGS~~~~af~~~S~Fg~vElp~L~p~kV~~v~i~vvh~l~~~~~~sC 200 (242)
T cd04759 130 VSAFWKMASKMFAEAACGVVH-------VML--NGSASGGAFRNNSTFGSVEIPNLNPDKVSQVIIWVIHDLEGPNRDSC 200 (242)
T ss_pred HHHHHHHHHHHHHHhcCCeEE-------EEE--cCCCCCCCcCCCCceeeEEcccCCccceeeEEEEEEcCCCCCccccc
Confidence 344556799999999998764 122 355544345889999999999996 7999999998989999
Q ss_pred cCccccc
Q 026807 209 RDPEVLD 215 (233)
Q Consensus 209 r~pe~ld 215 (233)
-+.-+.+
T Consensus 201 ~~~Si~~ 207 (242)
T cd04759 201 GSGSIKE 207 (242)
T ss_pred ccchHHH
Confidence 9887665
No 112
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=40.79 E-value=63 Score=32.53 Aligned_cols=69 Identities=25% Similarity=0.458 Sum_probs=38.1
Q ss_pred hhHHHHHH-HHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHhHHHHHHHHHHhhcchhhhhHhHHH
Q 026807 3 QYDDALSA-FQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE-VENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSF 80 (233)
Q Consensus 3 ~y~dAlaa-fq~Alq~npqs~EvsrKIkrlsqL~k~kkra~e-ven~rsnvd~ak~L~~lk~em~~~~G~~e~~k~~fsF 80 (233)
-.|+||++ |... ..+.+.+++. .|+|| ||.-+ ++.++++-+. ..++.|+. +..-|+||.|
T Consensus 505 FVE~aLD~gf~~~--~~~~~~~IA~---~LsQL----KrVNdWLD~v~~~~~~-------~~~~~E~i--erLrkKIY~f 566 (579)
T PF06075_consen 505 FVEKALDAGFKKS--RGEDDGQIAG---MLSQL----KRVNDWLDEVGSGSNE-------SEELVETI--ERLRKKIYGF 566 (579)
T ss_pred HHHHHHhccchhc--ccCCCcchHH---HHHHH----HHHHHHHHHhccCCcc-------cccHHHHH--HHHHHHHHHH
Confidence 34666655 3333 3455555554 66666 33334 4555554443 11122222 2234789999
Q ss_pred HHHHHHHHH
Q 026807 81 VVETMETAV 89 (233)
Q Consensus 81 ~ve~~e~Av 89 (233)
|.+-||+|.
T Consensus 567 LL~HV~SAa 575 (579)
T PF06075_consen 567 LLTHVESAA 575 (579)
T ss_pred HHHHHHHHH
Confidence 999999997
No 113
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=39.64 E-value=1.5e+02 Score=21.99 Aligned_cols=16 Identities=19% Similarity=0.567 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHhh
Q 026807 2 EQYDDALSAFQTALQY 17 (233)
Q Consensus 2 e~y~dAlaafq~Alq~ 17 (233)
.+|++|+..|+.|+++
T Consensus 20 g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 20 GRFQEALVCYQEGIDL 35 (77)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3799999999999875
No 114
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=39.59 E-value=93 Score=30.68 Aligned_cols=16 Identities=44% Similarity=0.922 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHhh
Q 026807 2 EQYDDALSAFQTALQY 17 (233)
Q Consensus 2 e~y~dAlaafq~Alq~ 17 (233)
.+|+||+.+||-||+|
T Consensus 24 ~nY~eA~~lY~~aleY 39 (439)
T KOG0739|consen 24 KNYEEALRLYQNALEY 39 (439)
T ss_pred hchHHHHHHHHHHHHH
Confidence 4688888888877776
No 115
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=39.43 E-value=23 Score=33.43 Aligned_cols=22 Identities=23% Similarity=0.620 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHhhCCCcHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAE 23 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~E 23 (233)
++|++|+.-|-.|++++|.++-
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAV 116 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAV 116 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcch
Confidence 4799999999999999998763
No 116
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.10 E-value=76 Score=30.64 Aligned_cols=17 Identities=35% Similarity=0.766 Sum_probs=14.6
Q ss_pred ChhhHHHHHHHHHHHhh
Q 026807 1 MEQYDDALSAFQTALQY 17 (233)
Q Consensus 1 me~y~dAlaafq~Alq~ 17 (233)
|.||.||+.+|...|-|
T Consensus 177 lrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 177 LRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67999999999988754
No 117
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=38.96 E-value=1.1e+02 Score=30.22 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSR 26 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Evsr 26 (233)
.++++|+..|+.||+.+|++.++..
T Consensus 63 g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 63 KQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4688999999999999999887654
No 118
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=37.87 E-value=26 Score=25.57 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=28.9
Q ss_pred hhHHHHhHHHHHHHH--HHhhcchhhhhHhHHHHHHHHHHHHhhhhcc
Q 026807 50 NVDMVQHLDEFKSEM--SEKYGAEECWKHVFSFVVETMETAVKSWHET 95 (233)
Q Consensus 50 nvd~ak~L~~lk~em--~~~~G~~e~~k~~fsF~ve~~e~Avk~whe~ 95 (233)
||.+..+++.|-.++ ++.|+++. |+|..|++-|.+.
T Consensus 3 ~isL~~~~~~~i~~~V~sG~Y~s~S----------EVir~aLR~le~~ 40 (69)
T TIGR02606 3 SVSLGEHLESFIRSQVQSGRYGSAS----------EVVRAALRLLEER 40 (69)
T ss_pred eeecCHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHHHH
Confidence 666777888877776 78899998 8999999888763
No 119
>PF04229 GrpB: GrpB protein; InterPro: IPR007344 This family of uncharacterised proteins is also known as GrpB.; PDB: 2NRK_A.
Probab=37.77 E-value=63 Score=26.53 Aligned_cols=44 Identities=14% Similarity=0.442 Sum_probs=28.4
Q ss_pred HHhhhhhHHHHhHHHHHHHHHHhhcc-hhhh-hHhHHHHHHHHHHH
Q 026807 45 ENIRSNVDMVQHLDEFKSEMSEKYGA-EECW-KHVFSFVVETMETA 88 (233)
Q Consensus 45 en~rsnvd~ak~L~~lk~em~~~~G~-~e~~-k~~fsF~ve~~e~A 88 (233)
+-||+|-+.++..+.||.+++.+|+. -+-. ..=-.|+.++++.|
T Consensus 122 DyLr~~p~~~~~Y~~lK~~la~~~~~d~~~Y~~~K~~fi~~il~rA 167 (167)
T PF04229_consen 122 DYLRAHPELRREYEALKRELAKRFPNDRDAYTAAKSAFIKEILQRA 167 (167)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTT-SS-HHHH----HHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHhcC
Confidence 56899999999999999999988875 1111 11124566666654
No 120
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=37.71 E-value=1.4e+02 Score=30.94 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=36.0
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026807 1 MEQYDDALSAFQTALQYNPQSAE-VSRKIKRVSQLAKDKKRAQEVENIRS 49 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~E-vsrKIkrlsqL~k~kkra~even~rs 49 (233)
+.++|.||..|..|+-.+|-|.- --.|+.-|--|.|..+-.+|+|.++.
T Consensus 536 ~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 46899999999999999998752 12334445566777777777777765
No 121
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.67 E-value=21 Score=37.70 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.7
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVS 25 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~Evs 25 (233)
|-+||+|+++|+.||+.-|.++++-
T Consensus 265 ~~~~d~Avs~Y~rAl~lrpn~A~a~ 289 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLRPNHAVAH 289 (966)
T ss_pred HhcchHHHHHHHHHHhcCCcchhhc
Confidence 4579999999999999999998764
No 122
>PLN02789 farnesyltranstransferase
Probab=37.28 E-value=27 Score=31.65 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVS 25 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Evs 25 (233)
+++++||.++..|++.||.+..+-
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW 74 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVW 74 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHH
Confidence 578999999999999999998763
No 123
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=37.17 E-value=44 Score=29.78 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=24.4
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 35 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~ 35 (233)
|.+|+||....+.||+.+|++.++..-.=.++++.
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL 248 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence 46789999999999999988888655555555543
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=37.05 E-value=99 Score=26.33 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 35 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~ 35 (233)
.+|++|...|+.+..++|.+.+----+--.-|+.
T Consensus 49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~ 82 (157)
T PRK15363 49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ 82 (157)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4799999999999999999987543333333333
No 125
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=36.57 E-value=29 Score=25.55 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHhh
Q 026807 2 EQYDDALSAFQTALQY 17 (233)
Q Consensus 2 e~y~dAlaafq~Alq~ 17 (233)
.+|++|+..|..||++
T Consensus 20 g~y~eA~~lY~~ale~ 35 (75)
T cd02684 20 GDAAAALSLYCSALQY 35 (75)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3677777777777654
No 126
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=36.53 E-value=1.1e+02 Score=28.50 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=47.6
Q ss_pred HHHHHhhC------CC---cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HhHHHHHHHHHHhhcchhhhhHhHH
Q 026807 11 FQTALQYN------PQ---SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMV--QHLDEFKSEMSEKYGAEECWKHVFS 79 (233)
Q Consensus 11 fq~Alq~n------pq---s~EvsrKIkrlsqL~k~kkra~even~rsnvd~a--k~L~~lk~em~~~~G~~e~~k~~fs 79 (233)
+|+|.+.| |. +.+|-.+||++++|--+-=|-- .+=+|||+-.. +..+.=-..+.+.++++||.+.+-.
T Consensus 180 A~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~~~-K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~ 258 (266)
T KOG0016|consen 180 AQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLLGM-KKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQ 258 (266)
T ss_pred HHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHH
Confidence 46666665 22 4688899999998865543322 23458875544 4455555667888999999999887
Q ss_pred HHH
Q 026807 80 FVV 82 (233)
Q Consensus 80 F~v 82 (233)
|+.
T Consensus 259 ~~~ 261 (266)
T KOG0016|consen 259 YLS 261 (266)
T ss_pred Hhc
Confidence 764
No 127
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=36.13 E-value=30 Score=26.02 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHh
Q 026807 3 QYDDALSAFQTALQ 16 (233)
Q Consensus 3 ~y~dAlaafq~Alq 16 (233)
+|++|+..|+.|++
T Consensus 21 ~y~eA~~~Y~~aie 34 (76)
T cd02681 21 RYSEAVFYYKEAAQ 34 (76)
T ss_pred CHHHHHHHHHHHHH
Confidence 56666666666554
No 128
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=35.61 E-value=1.1e+02 Score=30.00 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=27.9
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 32 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrls 32 (233)
+.++++|..+|+..|..||.|..--+.+-..-
T Consensus 51 Lg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 51 LGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 46899999999999999999998877776655
No 129
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=34.62 E-value=1.4e+02 Score=29.81 Aligned_cols=75 Identities=25% Similarity=0.495 Sum_probs=49.2
Q ss_pred HhhCCCcHHHHHH---HHHHHHHHHHHHHHHH---H----HHhhhhh-------HHH------HhHHHHHHHHHHhhcch
Q 026807 15 LQYNPQSAEVSRK---IKRVSQLAKDKKRAQE---V----ENIRSNV-------DMV------QHLDEFKSEMSEKYGAE 71 (233)
Q Consensus 15 lq~npqs~EvsrK---IkrlsqL~k~kkra~e---v----en~rsnv-------d~a------k~L~~lk~em~~~~G~~ 71 (233)
|-+||+-.|..++ |.+|+++.|+..+.+= | -|+.+-. +++ +-+-.+..=-..||-|+
T Consensus 227 LtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDE 306 (442)
T KOG2759|consen 227 LTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDE 306 (442)
T ss_pred hhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcH
Confidence 5678999888743 7888888887665543 2 2332222 121 11333444446799999
Q ss_pred hhhhHhHHHHHHHHHHHHh
Q 026807 72 ECWKHVFSFVVETMETAVK 90 (233)
Q Consensus 72 e~~k~~fsF~ve~~e~Avk 90 (233)
|...+| +|+.|.|+..++
T Consensus 307 DL~~di-~~L~e~L~~svq 324 (442)
T KOG2759|consen 307 DLVDDI-EFLTEKLKNSVQ 324 (442)
T ss_pred HHHHHH-HHHHHHHHHHHH
Confidence 987775 799999998883
No 130
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=34.56 E-value=1.7e+02 Score=28.72 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHH-HhHHHHHHHHHHhhcchhhhhHh
Q 026807 3 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS----NVDMV-QHLDEFKSEMSEKYGAEECWKHV 77 (233)
Q Consensus 3 ~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~even~rs----nvd~a-k~L~~lk~em~~~~G~~e~~k~~ 77 (233)
..|.|+..+..|||-||.+.-+++-.-+|--...+ -.+-|+.+++ |-+.- .-|+.|+.-- ..-|..+ +-
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~--y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y-~~lg~~~---~~ 268 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGD--YQKAVEALERVLEQNPEYLSEVLEMLYECY-AQLGKPA---EG 268 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc--hHHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHhCCHH---HH
Confidence 46778999999999999999999877666433222 2233455433 22222 2244444331 1234444 55
Q ss_pred HHHHHHHHHHH
Q 026807 78 FSFVVETMETA 88 (233)
Q Consensus 78 fsF~ve~~e~A 88 (233)
.+|+...|+..
T Consensus 269 ~~fL~~~~~~~ 279 (389)
T COG2956 269 LNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHcc
Confidence 67888887753
No 131
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=34.43 E-value=50 Score=22.83 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=16.7
Q ss_pred HHHHHhhhhhHH-HHhHHHHHHHHHHhhcchhh
Q 026807 42 QEVENIRSNVDM-VQHLDEFKSEMSEKYGAEEC 73 (233)
Q Consensus 42 ~even~rsnvd~-ak~L~~lk~em~~~~G~~e~ 73 (233)
...+++++=..+ ...|+.+=..+.++||+.|-
T Consensus 15 ~~~~~~~~~~~~~~e~l~~~l~~i~~~yGs~e~ 47 (68)
T PF13348_consen 15 DARENLRSLMSVRPEYLEAALDAIDERYGSVEN 47 (68)
T ss_dssp -------HHHS--HHHHHHHHHHHHHHHSSHHH
T ss_pred hhhhhhhhhcCccHHHHHHHHHHHHHHcCCHHH
Confidence 334555543323 24677777778888999994
No 132
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=34.43 E-value=33 Score=35.14 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVS 32 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrls 32 (233)
.+|++||..||.||..+|++.++-.-|-=+-
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGYIY 499 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 4799999999999999999998866665443
No 133
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=34.37 E-value=1.1e+02 Score=23.19 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHH-------HhhCCCcHH
Q 026807 3 QYDDALSAFQTA-------LQYNPQSAE 23 (233)
Q Consensus 3 ~y~dAlaafq~A-------lq~npqs~E 23 (233)
+|+|||..|+.| +...|+++-
T Consensus 21 r~~eAi~~Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 21 NAEDAITNYKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 455555555554 555566553
No 134
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=33.92 E-value=2.1e+02 Score=25.27 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=21.9
Q ss_pred hhCCCc-HHHHHHHHHHHHHHHHHHHHH
Q 026807 16 QYNPQS-AEVSRKIKRVSQLAKDKKRAQ 42 (233)
Q Consensus 16 q~npqs-~EvsrKIkrlsqL~k~kkra~ 42 (233)
...||+ .||++-|+.|..|+|+-+|..
T Consensus 11 ~~a~q~~eeV~~~Ir~iGDlqRE~~RLe 38 (170)
T COG4396 11 IEAAQDKEEVTAFIRQIGDLQREVKRLE 38 (170)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 579999999999999998864
No 135
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=33.74 E-value=1.3e+02 Score=30.13 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=22.3
Q ss_pred ChhhHHHHHHHHHHHhhCCC---cHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQ---SAEVSRKIKR 30 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npq---s~EvsrKIkr 30 (233)
|-+||.|.+-|.+.|++||. +.|+-.|+-.
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~ 151 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL 151 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh
Confidence 45799999999999999994 4444444433
No 136
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=33.36 E-value=39 Score=22.51 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHhh
Q 026807 2 EQYDDALSAFQTALQY 17 (233)
Q Consensus 2 e~y~dAlaafq~Alq~ 17 (233)
++|++|+.=|+.||++
T Consensus 15 e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 15 ENFEQAIEDYEKALEI 30 (38)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 6899999999999975
No 137
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.97 E-value=1.8e+02 Score=30.25 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIK 29 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIk 29 (233)
++||+|+++||-.++.|-...++-|+.-
T Consensus 124 ~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 124 ERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 7899999999999999988888776543
No 138
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=32.50 E-value=1.2e+02 Score=23.24 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Q 026807 5 DDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 40 (233)
Q Consensus 5 ~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkr 40 (233)
.|-.-.|.-|..||++.+.+.+--.+|.++..+++|
T Consensus 69 ~D~~l~~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 69 SDFVLMFDNACKYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 455567888999999999999999999998888776
No 139
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=32.39 E-value=2.2e+02 Score=29.90 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 37 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~ 37 (233)
..|++||..|+-||...|.|..+-|-+--|.--.|+
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 479999999999999999999998876655433333
No 140
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=31.98 E-value=1.8e+02 Score=23.37 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh------------HHHHHHHHHHhhcchhhhhHhHHHHHHHHHHH
Q 026807 21 SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQH------------LDEFKSEMSEKYGAEECWKHVFSFVVETMETA 88 (233)
Q Consensus 21 s~EvsrKIkrlsqL~k~kkra~even~rsnvd~ak~------------L~~lk~em~~~~G~~e~~k~~fsF~ve~~e~A 88 (233)
|.|.-..+.||...+. .+|-++|-+|++-... -+++..++. ......--+|+|++-++-++
T Consensus 21 s~E~~a~le~Lr~~~e----e~eY~~mv~~~~~~~~~~~~~~~~~~~~~~t~~~~~k---~~~~qls~v~Nilvsv~~~~ 93 (142)
T PF11712_consen 21 SPELKARLERLRAEQE----EREYQRMVRNVDPSQSFSQTPAFGSDEPEDTPAQELK---SVKRQLSTVFNILVSVFAVF 93 (142)
T ss_pred CHHHHHHHHHHHHHHH----HHHHHHHhcCCCccccccccccccccCCcCcHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 7777766666644433 3455677777754322 133344433 22333445789999999888
Q ss_pred Hhhh
Q 026807 89 VKSW 92 (233)
Q Consensus 89 vk~w 92 (233)
+-.|
T Consensus 94 ~~~~ 97 (142)
T PF11712_consen 94 FAGW 97 (142)
T ss_pred HHHH
Confidence 8777
No 141
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=31.59 E-value=2e+02 Score=20.82 Aligned_cols=25 Identities=8% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807 5 DDALSAFQTALQYNPQSAEVSRKIK 29 (233)
Q Consensus 5 ~dAlaafq~Alq~npqs~EvsrKIk 29 (233)
+=+...|..-++.+|+....=.+.+
T Consensus 21 ~~g~~~f~~lf~~~P~~~~~F~~~~ 45 (140)
T cd01040 21 EIGLEFYERLFKAHPETRALFSRFG 45 (140)
T ss_pred hHHHHHHHHHHHHChhHHHHhHHhC
Confidence 4467789999999998777666644
No 142
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=31.49 E-value=1.4e+02 Score=25.43 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHH-HHHhhhhhHH-HHhHHHHHHHHHHhhcch
Q 026807 30 RVSQLAKDKKRAQE-VENIRSNVDM-VQHLDEFKSEMSEKYGAE 71 (233)
Q Consensus 30 rlsqL~k~kkra~e-ven~rsnvd~-ak~L~~lk~em~~~~G~~ 71 (233)
...||-..|.+... ++.++|-++. ..-++.||+-|-.||||-
T Consensus 82 ~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKFgdn 125 (131)
T KOG1760|consen 82 LQDQLEEKKETLEKEIEELESELESISARMDELKKVLYAKFGDN 125 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45677777776644 7888887544 455999999999999973
No 143
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=30.26 E-value=1e+02 Score=23.66 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 026807 6 DALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 39 (233)
Q Consensus 6 dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kk 39 (233)
|-.-.|.-|..||++++.+..--.+|.++-+.||
T Consensus 70 D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~~~~ 103 (103)
T cd05520 70 DLNLMFENAKRYNVPNSRIYKDAEKLQKLMQAKK 103 (103)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 4445688899999999999999999999988775
No 144
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=30.09 E-value=1.1e+02 Score=28.38 Aligned_cols=50 Identities=8% Similarity=0.213 Sum_probs=36.3
Q ss_pred HHhhhhhHHHHhHHHHHHHHHHhhc-chhhhhHh-HHHHHHHHHHHHhhhhcc
Q 026807 45 ENIRSNVDMVQHLDEFKSEMSEKYG-AEECWKHV-FSFVVETMETAVKSWHET 95 (233)
Q Consensus 45 en~rsnvd~ak~L~~lk~em~~~~G-~~e~~k~~-fsF~ve~~e~Avk~whe~ 95 (233)
.-||+|=+.+..++.||.+++.+|+ |-+-..+- -.|+.+.+..|. .|..+
T Consensus 339 DyLr~~p~~~~~Y~~lK~~la~~~~~d~~~Y~~~K~~fi~~i~~~a~-~w~~~ 390 (395)
T PRK03333 339 DWLRADPAARAEYLAVKRRAARRADGDTAAYADAKEPWFLDAYPRAW-EWADA 390 (395)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCCccHHHHHhcchHHHHHHHHHHH-HHHHh
Confidence 5689999999999999999999994 44432221 246777777765 57763
No 145
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=29.83 E-value=49 Score=25.38 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=28.3
Q ss_pred hhHHHHhHHHHHHHHHHhhcch-hhhhHhHHHHHHHHHH
Q 026807 50 NVDMVQHLDEFKSEMSEKYGAE-ECWKHVFSFVVETMET 87 (233)
Q Consensus 50 nvd~ak~L~~lk~em~~~~G~~-e~~k~~fsF~ve~~e~ 87 (233)
.+|-.+.++++-.+|.++||++ ++.+++-.|+....+.
T Consensus 44 ~~DG~~tv~eIi~~L~~~y~~~~~~~~DV~~fl~~L~~~ 82 (88)
T PRK02079 44 LIDGKRTVAAIIAELQQQFPDVPGLDEDVLEFLEVARAK 82 (88)
T ss_pred HccCCCCHHHHHHHHHHHccchhhHHHHHHHHHHHHHHC
Confidence 3445567888999999999665 5778888888765553
No 146
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=29.44 E-value=1.1e+02 Score=23.58 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 026807 5 DDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 38 (233)
Q Consensus 5 ~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~k 38 (233)
+|..-.|.-|..||++.+++.+--..|.++.++|
T Consensus 69 ~D~~li~~Na~~yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 69 DDFKLMFRNARHYNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 4555678899999999999999888888887765
No 147
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=29.22 E-value=3.9e+02 Score=28.94 Aligned_cols=62 Identities=24% Similarity=0.255 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhhHHHHhHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE----VENIRSNVDMVQHLDEFKSE 63 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~e----ven~rsnvd~ak~L~~lk~e 63 (233)
+.++.|.-.|-.|+|+||.+-+.--+=--|-|=.-+.+||.+ +.++-.+||.-+.++.+..-
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 457788899999999999886653222222222234555544 55555568877777666553
No 148
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=29.09 E-value=2.7e+02 Score=21.40 Aligned_cols=61 Identities=18% Similarity=0.340 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--------HHhHHHHHHHHHHhhcch
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM--------VQHLDEFKSEMSEKYGAE 71 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~even~rsnvd~--------ak~L~~lk~em~~~~G~~ 71 (233)
.+.+.||+..+.++. +|+.++.....-..+.+.+.+-|+..+- +..|+....|++.+...+
T Consensus 11 ~rL~~aid~LE~~v~---------~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVD---------RRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHH---------HHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666543 4444444433333333333333333221 244677777777665543
No 149
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=29.08 E-value=58 Score=24.49 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=24.6
Q ss_pred hhHHHHhHHHHHHHH--HHhhcchhhhhHhHHHHHHHHHHHHhhhhc
Q 026807 50 NVDMVQHLDEFKSEM--SEKYGAEECWKHVFSFVVETMETAVKSWHE 94 (233)
Q Consensus 50 nvd~ak~L~~lk~em--~~~~G~~e~~k~~fsF~ve~~e~Avk~whe 94 (233)
||.+..+++.|-.+. ++.|+++. |+|..|++-|.+
T Consensus 6 sisL~~~~~~~i~~~V~sG~Y~s~S----------EvvR~aLRlle~ 42 (80)
T PF03693_consen 6 SISLTPELEAFIEEQVASGRYSSAS----------EVVREALRLLEE 42 (80)
T ss_dssp EE---HHHHHHHHHHHCTTS-SSHH----------HHHHHHHHHHHH
T ss_pred eEecCHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHHH
Confidence 577778888887777 88999998 788888877754
No 150
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=28.87 E-value=60 Score=27.28 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVS 25 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Evs 25 (233)
.+|++|++.++.+++.+|.+..+.
T Consensus 57 g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 57 GDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHH
Confidence 579999999999999999998553
No 151
>PLN02789 farnesyltranstransferase
Probab=28.81 E-value=51 Score=29.90 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEV 24 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Ev 24 (233)
.+|++||+.|..+++.||++.++
T Consensus 156 ~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 156 GGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred hhHHHHHHHHHHHHHHCCCchhH
Confidence 45778888888888888777653
No 152
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=28.80 E-value=4.4e+02 Score=24.76 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhhhHHHHhHHHHHHH--HHHhhcchhhhhHhHHHHHHHHHHHHhh
Q 026807 39 KRAQEVENIRSNVDMVQHLDEFKSE--MSEKYGAEECWKHVFSFVVETMETAVKS 91 (233)
Q Consensus 39 kra~even~rsnvd~ak~L~~lk~e--m~~~~G~~e~~k~~fsF~ve~~e~Avk~ 91 (233)
++..++-.++..++ .+++..++ ||..|+..+..+++..|-..+...-.++
T Consensus 259 ~~g~~~a~L~~A~~---~~e~a~~~~~~c~~~~~~~~l~~~l~~~~~~~~~~~~~ 310 (350)
T cd09244 259 RRLLGKAHLKEALL---LHEEALRLHRMCRFLRNVDSLQEVLKEAHDRSLNKYSS 310 (350)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555554 34444554 7888999999999999988887776644
No 153
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.18 E-value=22 Score=30.12 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=15.5
Q ss_pred ccccccccccCccccccc
Q 026807 159 IISYPQVWRGQGLRKWRH 176 (233)
Q Consensus 159 iIsYPQVWkgqGsRkWk~ 176 (233)
.+-|||.|++.|++.|--
T Consensus 78 ~vh~hqt~~~pg~~~~v~ 95 (129)
T COG4922 78 TVHYHQTVSEPGSYTTVT 95 (129)
T ss_pred EEEEeeeeCCCCcceeEE
Confidence 467999999999999853
No 154
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.14 E-value=4.4e+02 Score=28.09 Aligned_cols=100 Identities=22% Similarity=0.226 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHH---hHHHHHHHHHHhhcchhhhhHhHHHHHHHHHHH---HhhhhccCCCCce
Q 026807 28 IKRVSQLAKDKKRAQEVENIRSNVDMVQ---HLDEFKSEMSEKYGAEECWKHVFSFVVETMETA---VKSWHETSKVDAK 101 (233)
Q Consensus 28 IkrlsqL~k~kkra~even~rsnvd~ak---~L~~lk~em~~~~G~~e~~k~~fsF~ve~~e~A---vk~whe~~kvd~~ 101 (233)
.+||-.-.+..-+..|+..-.-|-++++ -.|++|.++-.+--+- +-+...||.| .++-.++...+-.
T Consensus 84 ~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL-------~~Lk~~ieqaq~~~~El~~~n~pkl~ 156 (907)
T KOG2264|consen 84 QKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLEL-------SALKGEIEQAQRQLEELRETNNPKLF 156 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHH-------HHHHhHHHHHHHHHHHHHhhcCCcee
Confidence 3444333333334444433334555653 2677777765433333 3334444444 3444457777766
Q ss_pred EeeecCCCCccccccCceecccccccCCcchhhhHHHHH
Q 026807 102 VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLR 140 (233)
Q Consensus 102 V~FLld~~kt~tekyap~VnidkAFeSP~th~~Cf~fLR 140 (233)
.-|.|=+.+-+.+--+|- -.||--.-|||.|-|
T Consensus 157 LP~sllP~~~pr~l~pp~------~~~~c~lhncfdySR 189 (907)
T KOG2264|consen 157 LPFSLLPLQIPRELEPPS------QISPCQLHNCFDYSR 189 (907)
T ss_pred eccccCcccCcccCCCcc------ccCcccchhcccccc
Confidence 677766666665544443 357888889999888
No 155
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=27.99 E-value=3.6e+02 Score=22.61 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRK 27 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrK 27 (233)
+.+++++..|+.|.+.+|++...-..
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 45789999999999999998875443
No 156
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.72 E-value=36 Score=33.72 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=18.6
Q ss_pred ChhhHHHHHHHHHHHhhCCCcH
Q 026807 1 MEQYDDALSAFQTALQYNPQSA 22 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~ 22 (233)
|++||||+..|..+|+..|-+-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nv 324 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINV 324 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccc
Confidence 7899999999999999876543
No 157
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=27.46 E-value=4.4e+02 Score=23.43 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHhhCCCcHHHHH
Q 026807 3 QYDDALSAFQTALQYNPQSAEVSR 26 (233)
Q Consensus 3 ~y~dAlaafq~Alq~npqs~Evsr 26 (233)
-|+||++-|+.||++||...+..-
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw 73 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALW 73 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHH
Confidence 489999999999999999877543
No 158
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.13 E-value=45 Score=34.04 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKI 28 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKI 28 (233)
..||.|++.|+.||+.+|++.-+=-|+
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 369999999999999999987665443
No 159
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.09 E-value=92 Score=31.63 Aligned_cols=115 Identities=20% Similarity=0.267 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHhHHHHHHHHHHhhcchhhhhHhHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEV-SRKIKRVSQLAKDKKRAQE-VENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS 79 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Ev-srKIkrlsqL~k~kkra~e-ven~rsnvd~ak~L~~lk~em~~~~G~~e~~k~~fs 79 (233)
+.|++|+..|-.|+++.|+|-=+ |.++--...|.+=.+-.+| -+..+-|=|-+|.+..+--.+-. .|+-|
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~------- 87 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYE------- 87 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHH-------
Confidence 47999999999999999997544 3344444444444444444 24445677777777666554421 24444
Q ss_pred HHHHHHHHHHhhhhccCCCCceEeeecC--CCCccccccCceecccccccCCcchhhhH
Q 026807 80 FVVETMETAVKSWHETSKVDAKVYFLLD--KEKTDTEKYAPIVNVDKAFESPHTHGSCF 136 (233)
Q Consensus 80 F~ve~~e~Avk~whe~~kvd~~V~FLld--~~kt~tekyap~VnidkAFeSP~th~~Cf 136 (233)
.|+....++=+.||+--=|.. .+.. ...|+. +.+|++|.+|.+=.
T Consensus 88 -------eA~~ay~~GL~~d~~n~~L~~gl~~a~-~~~~~~----~~~~~~p~~~~~l~ 134 (539)
T KOG0548|consen 88 -------EAILAYSEGLEKDPSNKQLKTGLAQAY-LEDYAA----DQLFTKPYFHEKLA 134 (539)
T ss_pred -------HHHHHHHHHhhcCCchHHHHHhHHHhh-hHHHHh----hhhccCcHHHHHhh
Confidence 677777777788876444322 1111 233333 89999999997643
No 160
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=26.77 E-value=3.4e+02 Score=21.87 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=27.2
Q ss_pred HhHHHHHHHHHHhhcchhhhhHhHHHHHHHHHHHHhh
Q 026807 55 QHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKS 91 (233)
Q Consensus 55 k~L~~lk~em~~~~G~~e~~k~~fsF~ve~~e~Avk~ 91 (233)
+-.+.|.+.+-| .||-|.|-.+..+=..+|+++++-
T Consensus 75 ~~~~~~~~~LKE-iGDveNWa~~iE~Dl~~i~~~L~~ 110 (121)
T PF06320_consen 75 KLVDSFNDALKE-IGDVENWAEMIERDLRVIEETLRY 110 (121)
T ss_pred HHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHH
Confidence 345556555554 499999999999988888888853
No 161
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=26.71 E-value=27 Score=28.98 Aligned_cols=9 Identities=44% Similarity=1.073 Sum_probs=8.0
Q ss_pred cccccCccc
Q 026807 164 QVWRGQGLR 172 (233)
Q Consensus 164 QVWkgqGsR 172 (233)
++|.|||.+
T Consensus 107 kTWTGrGR~ 115 (134)
T PRK10328 107 KTWTGQGRT 115 (134)
T ss_pred CcccCCCCC
Confidence 799999986
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=26.66 E-value=2e+02 Score=24.82 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 46 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~even 46 (233)
.+|+||...||-..-|+|.+.+..--+--.-|+.++=..|.+.=.
T Consensus 51 Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~ 95 (165)
T PRK15331 51 GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYA 95 (165)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999887666666777777666666433
No 163
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=26.43 E-value=2.7e+02 Score=26.07 Aligned_cols=63 Identities=21% Similarity=0.467 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH--HHHHH--------HHHHHhhhhhHHH-HhHHHHHHHHHH
Q 026807 4 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK--DKKRA--------QEVENIRSNVDMV-QHLDEFKSEMSE 66 (233)
Q Consensus 4 y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k--~kkra--------~even~rsnvd~a-k~L~~lk~em~~ 66 (233)
|+.+-.|=+.|++|+-.-.+|.-|++.+|...- ...++ .+|+.+++.|+-. ..++.+...+.+
T Consensus 40 yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 40 YQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788888999999999999999999999875432 11111 1245555555422 335555555554
No 164
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.37 E-value=3.1e+02 Score=26.92 Aligned_cols=77 Identities=21% Similarity=0.385 Sum_probs=51.8
Q ss_pred ChhhHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHH-----H-HHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhc-chh
Q 026807 1 MEQYDDALSAFQTALQYNPQSA-EVSRKIKRVSQL-----A-KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYG-AEE 72 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~-EvsrKIkrlsqL-----~-k~kkra~even~rsnvd~ak~L~~lk~em~~~~G-~~e 72 (233)
|.+|..|+..-..+|.+.|.|. -+=|+=+-+-+| | .+=+++++++ -+|=++...|-.++.-+.+-+- +.+
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998774 445554443322 2 2345556555 3676677777777777655443 367
Q ss_pred hhhHhHH
Q 026807 73 CWKHVFS 79 (233)
Q Consensus 73 ~~k~~fs 79 (233)
.|++||+
T Consensus 348 ~y~~mF~ 354 (397)
T KOG0543|consen 348 MYANMFA 354 (397)
T ss_pred HHHHHhh
Confidence 8888884
No 165
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=26.30 E-value=1.9e+02 Score=24.39 Aligned_cols=20 Identities=15% Similarity=0.597 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 026807 32 SQLAKDKKRAQEVENIRSNV 51 (233)
Q Consensus 32 sqL~k~kkra~even~rsnv 51 (233)
-+|.|++.|.+++|.|++=+
T Consensus 91 ~rl~Re~~r~~~~e~L~~ii 110 (196)
T PF12685_consen 91 ARLEREQSRSKQIETLKEII 110 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999988743
No 166
>PRK14574 hmsH outer membrane protein; Provisional
Probab=25.77 E-value=1.8e+02 Score=30.26 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=23.8
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIK 29 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIk 29 (233)
++++.+||..|+.+++.+|.+.++..+.=
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~ 210 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHL 210 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35777799999999999999999866543
No 167
>PF06952 PsiA: PsiA protein; InterPro: IPR009713 This family consists of several Enterobacterial PsiA proteins. The function of PsiA is unknown although it is thought that it may affect the generation of an SOS signal in Escherichia coli [].
Probab=25.67 E-value=22 Score=32.55 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=15.2
Q ss_pred eecccccccCCcchhhhHH
Q 026807 119 IVNVDKAFESPHTHGSCFQ 137 (233)
Q Consensus 119 ~VnidkAFeSP~th~~Cf~ 137 (233)
..-||.||.||+|+++=.+
T Consensus 150 QAeieLaF~tPetv~sWy~ 168 (238)
T PF06952_consen 150 QAEIELAFHTPETVSSWYA 168 (238)
T ss_pred HHHHHhhccCcHHHHHHHH
Confidence 3458999999999987544
No 168
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=25.61 E-value=4e+02 Score=27.11 Aligned_cols=49 Identities=24% Similarity=0.552 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HHHHH-HHHHH----HHHhhhhhHHHHh
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ-LAKDK-KRAQE----VENIRSNVDMVQH 56 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsq-L~k~k-kra~e----ven~rsnvd~ak~ 56 (233)
+-.+.|+.+|...++.. ..+|++|.. |.||. -|-++ |+.||.|.|.-++
T Consensus 143 ~~LekAl~~~~~i~~~E------~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~ 197 (508)
T PF00901_consen 143 EILEKALKSYGKIVKEE------NKQLDRLARALQKESRERTQDERKMVEEYRQKIDALKN 197 (508)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 44567888888877642 223333322 22222 12222 8889999877655
No 169
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.52 E-value=2.9e+02 Score=20.70 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHhhC
Q 026807 3 QYDDALSAFQTALQYN 18 (233)
Q Consensus 3 ~y~dAlaafq~Alq~n 18 (233)
-|.+|+..|..|+.+-
T Consensus 28 ~Y~~aie~l~~~~~~~ 43 (76)
T cd02681 28 YYKEAAQLLIYAEMAG 43 (76)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5999999999998554
No 170
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=25.38 E-value=1.3e+02 Score=27.73 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVS 25 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Evs 25 (233)
.+|.+|++.|+.|+..+|.+.|+-
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~~~ 137 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWEAW 137 (257)
T ss_pred cchHHHHHHHHHHhccCCCChhhh
Confidence 368888888888888888887753
No 171
>smart00528 HNS Domain in histone-like proteins of HNS family.
Probab=25.32 E-value=30 Score=24.06 Aligned_cols=13 Identities=38% Similarity=1.089 Sum_probs=10.0
Q ss_pred cccc----cccccCccc
Q 026807 160 ISYP----QVWRGQGLR 172 (233)
Q Consensus 160 IsYP----QVWkgqGsR 172 (233)
..|| ++|.|+|.+
T Consensus 11 Yr~p~~~g~tWsGrGr~ 27 (46)
T smart00528 11 YRYPDNNGETWSGRGRT 27 (46)
T ss_pred cCCCCCCCCcccCCCCC
Confidence 4566 599999986
No 172
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=25.14 E-value=81 Score=23.29 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026807 27 KIKRVSQLAKDKKRAQEVEN 46 (233)
Q Consensus 27 KIkrlsqL~k~kkra~even 46 (233)
.|++|.+|+|..-.-.|++.
T Consensus 7 ~i~~la~La~l~l~~ee~~~ 26 (95)
T PRK00034 7 EVKHLAKLARLELSEEELEK 26 (95)
T ss_pred HHHHHHHHhCCCCCHHHHHH
Confidence 35666666665555555444
No 173
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=24.81 E-value=3.9e+02 Score=22.60 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHhHHHHHHHHHHhhcchhhhhHhHH
Q 026807 7 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN--VDMVQHLDEFKSEMSEKYGAEECWKHVFS 79 (233)
Q Consensus 7 Alaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~even~rsn--vd~ak~L~~lk~em~~~~G~~e~~k~~fs 79 (233)
|-|.|+.|.+. .+-.++..-+.+++++.++.+... ++.++ ++.. ..-++=.++.++.|+ +..++...
T Consensus 12 A~ALf~~A~e~-~~~~~~~~~L~~~~~i~~~~~~l~---~ll~sp~~~~~-~k~~li~~i~~~~~~-~~~~nfL~ 80 (178)
T COG0712 12 AKALFELAEEK-GQLEEVEEELTFLAEILKNSPKLK---QLLSSPAVSAE-DKKELLISIFKKIGD-PLLQNFLR 80 (178)
T ss_pred HHHHHHHHHHh-ccHHHHHHHHHHHHHHHhcCHhHH---HHhcCcCCCHH-HHHHHHHHHHhccCc-HHHHHHHH
Confidence 66789999854 466779999999999999887444 44455 3332 233333445555565 33444433
No 174
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=24.61 E-value=1.7e+02 Score=28.07 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=26.3
Q ss_pred HHHhhhhhHHHHhHHHHHHHHHHh--------hcchhhhhHh
Q 026807 44 VENIRSNVDMVQHLDEFKSEMSEK--------YGAEECWKHV 77 (233)
Q Consensus 44 ven~rsnvd~ak~L~~lk~em~~~--------~G~~e~~k~~ 77 (233)
.+.+.+|+-.+.++++|+..+.++ +|+.||.+.|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (472)
T TIGR00408 393 WERFEQKIVIVETLEEIKQALNEKRGVVLVPWCGEEECEEDL 434 (472)
T ss_pred HHHHHhCeEEcCCHHHHHHHHHhCCCEEEEEecCCHHHHHHH
Confidence 366778877788999999999764 5889987654
No 175
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.30 E-value=99 Score=28.69 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=29.3
Q ss_pred ChhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 026807 1 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 42 (233)
Q Consensus 1 me~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~ 42 (233)
|.+.+.|-..|+.||+++||.....-..-++--.+++-.+|.
T Consensus 152 ~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 152 AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 346788889999999999999887655555544444444443
No 176
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=24.17 E-value=3e+02 Score=20.58 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhcchh
Q 026807 22 AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE 72 (233)
Q Consensus 22 ~EvsrKIkrlsqL~k~kkra~even~rsnvd~ak~L~~lk~em~~~~G~~e 72 (233)
.||-..|.+|.+|.+.-.+. +++.....-+..+++||...+++.+
T Consensus 8 ~ev~~sl~~l~~~~~~~~~~------~~~~~~~~e~~~~~~eL~~~l~~ie 52 (97)
T PF09177_consen 8 DEVQSSLDRLESLYRRWQRL------RSDTSSSEELKWLKRELRNALQSIE 52 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------TTHCC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh------cccCCCcHhHHHHHHHHHHHHHHHH
Confidence 46777788887777655443 3333233446666666666666655
No 177
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=24.07 E-value=32 Score=28.56 Aligned_cols=9 Identities=44% Similarity=1.073 Sum_probs=8.0
Q ss_pred cccccCccc
Q 026807 164 QVWRGQGLR 172 (233)
Q Consensus 164 QVWkgqGsR 172 (233)
++|.|||.+
T Consensus 107 ~TWTGrGR~ 115 (135)
T PRK10947 107 KTWTGQGRT 115 (135)
T ss_pred CcccCCCCC
Confidence 799999986
No 178
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=24.03 E-value=4.4e+02 Score=25.98 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAEV 24 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~Ev 24 (233)
-+|++||.....|++|+|-..|+
T Consensus 208 g~~~~Al~~Id~aI~htPt~~el 230 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHTPTLVEL 230 (517)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHH
Confidence 47999999999999999999987
No 179
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=24.01 E-value=1.3e+02 Score=24.00 Aligned_cols=39 Identities=28% Similarity=0.591 Sum_probs=29.3
Q ss_pred HHHhHHHHHHHHHHhhcchhhhhHhHHHHHHH----------HHHHHhhhhc
Q 026807 53 MVQHLDEFKSEMSEKYGAEECWKHVFSFVVET----------METAVKSWHE 94 (233)
Q Consensus 53 ~ak~L~~lk~em~~~~G~~e~~k~~fsF~ve~----------~e~Avk~whe 94 (233)
|.++|.+|.+++. .+.+..+++|+|.-+. +|+|+--|+=
T Consensus 4 lk~~l~~l~~~l~---~d~~~F~~~Y~f~F~~~~~~~qr~l~~e~Ai~~W~l 52 (117)
T PF03556_consen 4 LKQKLPELRKELR---SDPEYFKKFYRFTFDFAREEGQRSLPLETAIAYWRL 52 (117)
T ss_dssp HHHCHHHHHHHCC---HSHHHHHHHHHHHHHHHS-TT-SSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---cCHHHHHHHHHHHHHHhCCcccCCCCHHHHHHHHHH
Confidence 5567888888876 4678888888877654 6788888874
No 180
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=23.67 E-value=2e+02 Score=28.05 Aligned_cols=56 Identities=14% Similarity=0.376 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhc
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYG 69 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~even~rsnvd~ak~L~~lk~em~~~~G 69 (233)
..|-||+..-|++|++||=+.++-.-+-++ +-.|+-|+.+-||.+.++.-+-..||
T Consensus 293 g~~neAi~l~qr~ltldpL~e~~nk~lm~~------------la~~gD~is~~khyerya~vleaelg 348 (361)
T COG3947 293 GKPNEAIQLHQRALTLDPLSEQDNKGLMAS------------LATLGDEISAIKHYERYAEVLEAELG 348 (361)
T ss_pred CChHHHHHHHHHHhhcChhhhHHHHHHHHH------------HHHhccchhhhhHHHHHHHHHHHHhC
Confidence 357899999999999999887765433322 23456677778899988888877777
No 181
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=23.49 E-value=2.5e+02 Score=32.23 Aligned_cols=74 Identities=23% Similarity=0.316 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhHHHH--h---HHHHHHHHHHhhcchhhh
Q 026807 2 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK--DKKRAQEVENIRSNVDMVQ--H---LDEFKSEMSEKYGAEECW 74 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k--~kkra~even~rsnvd~ak--~---L~~lk~em~~~~G~~e~~ 74 (233)
|+|++|...|+..++--.|..+|=++ -+.-|-| +.+.|++|.+ |+=--+-| | +.+|+ .|-=||||+|-+
T Consensus 1544 ek~~~A~ell~~m~KKF~q~~~vW~~--y~~fLl~~ne~~aa~~lL~-rAL~~lPk~eHv~~IskfA-qLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFGQTRKVWIM--YADFLLRQNEAEAARELLK-RALKSLPKQEHVEFISKFA-QLEFKYGDAERG 1619 (1710)
T ss_pred hcchhHHHHHHHHHHHhcchhhHHHH--HHHHHhcccHHHHHHHHHH-HHHhhcchhhhHHHHHHHH-HHHhhcCCchhh
Confidence 67888999998888888866655443 3333332 3355555443 33111223 5 33343 345589999999
Q ss_pred hHhHH
Q 026807 75 KHVFS 79 (233)
Q Consensus 75 k~~fs 79 (233)
+.+|.
T Consensus 1620 RtlfE 1624 (1710)
T KOG1070|consen 1620 RTLFE 1624 (1710)
T ss_pred HHHHH
Confidence 99984
No 182
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=23.33 E-value=2.8e+02 Score=25.11 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHhhCCCcHH
Q 026807 3 QYDDALSAFQTALQYNPQSAE 23 (233)
Q Consensus 3 ~y~dAlaafq~Alq~npqs~E 23 (233)
-|++|-.+|+.|..-+...+|
T Consensus 14 ~Ye~A~~~Ye~av~ng~~~q~ 34 (199)
T PF08717_consen 14 AYETARQAYEEAVANGSSPQE 34 (199)
T ss_dssp HHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHHHcCCCHHH
Confidence 499999999999995544333
No 183
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.86 E-value=5.3e+02 Score=26.78 Aligned_cols=70 Identities=24% Similarity=0.198 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhhhccCCCCceEeeecCCCCccccccCceeccc-ccccCCcchhhhHHHHHhhhhhhhh
Q 026807 78 FSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVD-KAFESPHTHGSCFQFLRQYADDSFS 148 (233)
Q Consensus 78 fsF~ve~~e~Avk~whe~~kvd~~V~FLld~~kt~tekyap~Vnid-kAFeSP~th~~Cf~fLRqYAeesfs 148 (233)
-.|+.|.|++-+..=.+-.+++-+|-||.- .-|.+|..+.+++|+ .-+.+|=-|..-.-||-|-.+--.+
T Consensus 222 ~~~i~Elmq~r~~~dee~~~~~~svd~lis-~~t~tes~~~~t~IeWRg~kvkV~~~kV~~fL~~~~d~~~~ 292 (593)
T KOG2460|consen 222 NGFIDELMQSREQKDEELVKLLESVDFLIS-IQTSTESSATTTTIEWRGRKVKVIDEKVRQFLLQGLDIEPA 292 (593)
T ss_pred cchHHHHHHhhccCCchhhhhhhccchhhh-cchhhhhhcceeEEEecCcccccccHHHHHHHHHHHhhcHH
Confidence 348889999888554456679999999988 788899999999998 4577777777777777776655443
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=22.83 E-value=94 Score=24.66 Aligned_cols=19 Identities=37% Similarity=0.643 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHhhCCC
Q 026807 2 EQYDDALSAFQTALQYNPQ 20 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npq 20 (233)
-+||+|++.++.+++..|.
T Consensus 52 G~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 52 GRYDEALALLEEALEEFPD 70 (120)
T ss_pred CCHHHHHHHHHHHHHHCCC
Confidence 4788999999988887776
No 185
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=22.78 E-value=3e+02 Score=19.76 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHhhCCC
Q 026807 4 YDDALSAFQTALQYNPQ 20 (233)
Q Consensus 4 y~dAlaafq~Alq~npq 20 (233)
|.+|+..|..++++.|+
T Consensus 29 Y~~aie~l~~~~k~e~~ 45 (75)
T cd02678 29 YQHALEYFMHALKYEKN 45 (75)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 44444445555556663
No 186
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=22.75 E-value=2.2e+02 Score=20.99 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 026807 5 DDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 36 (233)
Q Consensus 5 ~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k 36 (233)
+|..-.|.-|..+||.++.+..--++|.+.-.
T Consensus 65 ~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe 96 (99)
T cd05506 65 ADVRLTFANAMRYNPPGNDVHTMAKELLKIFE 96 (99)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 56667889999999999999887777766543
No 187
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.65 E-value=5.9e+02 Score=23.33 Aligned_cols=56 Identities=14% Similarity=0.367 Sum_probs=23.9
Q ss_pred HHHHHHHhh----CCCcHHHHHHHHHHHHHHHHHHHHHH-HHHhhhh-hHHHHhHHHHHHHH
Q 026807 9 SAFQTALQY----NPQSAEVSRKIKRVSQLAKDKKRAQE-VENIRSN-VDMVQHLDEFKSEM 64 (233)
Q Consensus 9 aafq~Alq~----npqs~EvsrKIkrlsqL~k~kkra~e-ven~rsn-vd~ak~L~~lk~em 64 (233)
+.|+..|+. .+...++..-.+.|.+|.++.++..+ ++++... -.+.+-|.+++.|.
T Consensus 26 ~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 26 DTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp ----------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555532 34456666667777778777776644 4444443 33344444444443
No 188
>cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development.
Probab=22.38 E-value=2.4e+02 Score=26.20 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=62.2
Q ss_pred hHHHHhHHHHHHHHHHhhcchhhhhHhHHHHHHHHHHHHhhhhc-cCCCCceEeeecCCCCccccccCceeccc--cccc
Q 026807 51 VDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE-TSKVDAKVYFLLDKEKTDTEKYAPIVNVD--KAFE 127 (233)
Q Consensus 51 vd~ak~L~~lk~em~~~~G~~e~~k~~fsF~ve~~e~Avk~whe-~~kvd~~V~FLld~~kt~tekyap~Vnid--kAFe 127 (233)
+-+||-|+.+++-. .||.++..+.+-.|+.+.++...+=|.+ .+.+|+ +|. .-.|...|+ .-+
T Consensus 220 ~lIAKvLQnlAN~~--~F~KE~~M~~lN~fi~~~~~~~~~Fl~~i~~~~~~-----~d~------~~~p~~yis~~ei~- 285 (329)
T cd05130 220 KLMSKILQSIANHV--LFTKEEHMRPFNDFVKSNFDAARRFFLDIASDCPT-----SDN------VNHSLSFISDGNVL- 285 (329)
T ss_pred HHHHHHHHHHhccC--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHccCCCC-----ccc------cCCCceeccHHHHH-
Confidence 56778888888763 4888888899999999999988887888 554444 121 112333332 333
Q ss_pred CCcchhhhHHHHHhhhhhhhhhhhhhcccccccccccccccCccccc
Q 026807 128 SPHTHGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGLRKW 174 (233)
Q Consensus 128 SP~th~~Cf~fLRqYAeesfs~Aac~v~pKsiIsYPQVWkgqGsRkW 174 (233)
-+|+-|...+-+-+..-.| -+.|+-.|+|-|
T Consensus 286 --~lH~ll~~h~~~i~~~l~s--------------~~~~~~~~~~~~ 316 (329)
T cd05130 286 --ALHRLLWNNQEKIGQYLSS--------------NRDHKAVGRRPF 316 (329)
T ss_pred --HHHHHHHHHHHHHHHHHhc--------------cccccccChhHH
Confidence 5788888777666665555 233776777765
No 189
>cd00169 Chemokine Chemokine: small cytokines, including a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; distinguished from other cytokines by their receptors, which are G-protein coupled receptors; divided into 4 subfamilies based on the arrangement of the two N-terminal cysteines; some members can bind multiple receptors and many chemokine receptors can bind more than one chemokine; this redundancy allows precise control in stimulating the immune system and in contributing to the homeostasis of a cell; when expressed inappropriately, chemokines play a role in autoimmune diseases, vascular irregularities, graft rejection, neoplasia, and allergies; exist as monomers, dimers and multimers, but are believed to function as monomers; found only in vertebrates and a few viruses. See CDs: Chemokine_CXC (cd00273), Chemokine_CC (cd00272), Chemokine_C (cd00271), and Chemokine_CX3C (cd00274) for chemokine subgroups.
Probab=22.08 E-value=96 Score=21.31 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=24.7
Q ss_pred cCCCcceeEEeccc-c-ceeeeeeecccccccccccCccc
Q 026807 176 HSQQDGFFVQFESP-L-LRKLWFIPSSNEKGKTLCRDPEV 213 (233)
Q Consensus 176 ~~q~dGfFVQ~Esp-~-lRk~WFips~~Ekg~tlcr~pe~ 213 (233)
...-.++.+|..++ | ...+=|. +.+|+.+|-||+.
T Consensus 12 ~~~I~~y~~~~~~~~C~~~aIIf~---tk~g~~iC~dP~~ 48 (59)
T cd00169 12 PKNIKSYRVQEAGGHCSIPAVIFT---TKKGRKVCADPKE 48 (59)
T ss_pred chheEEEEEeCCCCCCCCceEEEE---EcCCCEEECCCCc
Confidence 34456788888872 3 6666554 4589999999974
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=22.04 E-value=1.6e+02 Score=28.59 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHhhCCCcHH
Q 026807 2 EQYDDALSAFQTALQYNPQSAE 23 (233)
Q Consensus 2 e~y~dAlaafq~Alq~npqs~E 23 (233)
.+|++|.++|+.|+.+|| |..
T Consensus 434 g~~~~A~~~l~rAl~L~p-s~~ 454 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEM-SWL 454 (517)
T ss_pred CCHHHHHHHHHHHHHcCC-CHH
Confidence 467888888888888887 544
No 191
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=22.00 E-value=5.2e+02 Score=26.60 Aligned_cols=85 Identities=22% Similarity=0.356 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHHHhhC----------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhcc
Q 026807 2 EQYDDALSAFQTALQYN----------PQSA-EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA 70 (233)
Q Consensus 2 e~y~dAlaafq~Alq~n----------pqs~-EvsrKIkrlsqL~k~kkra~even~rsnvd~ak~L~~lk~em~~~~G~ 70 (233)
+.-|.||.-|...++.. +.-. .+-.+|...+||.-+-|... -.++.+||+|=+.++|-.++-+-.|.
T Consensus 60 ~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~~vK~~L--~~vK~qveiAmE~~EL~~~vlg~l~~ 137 (683)
T PF08580_consen 60 EEIDSAISRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQMELDVKKTL--ISVKKQVEIAMEWEELWNDVLGDLDN 137 (683)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45667777776666652 2222 47788888999877444433 56677899996665555554422222
Q ss_pred --hhhhhHhHHHHHHHHHHH
Q 026807 71 --EECWKHVFSFVVETMETA 88 (233)
Q Consensus 71 --~e~~k~~fsF~ve~~e~A 88 (233)
++|.+.+|.---.-..+-
T Consensus 138 EIe~~~~~vfemeE~R~~Sp 157 (683)
T PF08580_consen 138 EIEECIRLVFEMEEKRHSSP 157 (683)
T ss_pred HHHHHHHHHHHHHHHHccCC
Confidence 256666665444333333
No 192
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=21.87 E-value=2.3e+02 Score=23.60 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhcchh
Q 026807 36 KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE 72 (233)
Q Consensus 36 k~kkra~even~rsnvd~ak~L~~lk~em~~~~G~~e 72 (233)
+-++|.++++.++. .|+.|++|+. ||.+.
T Consensus 22 ~~~~R~~~L~~l~~------~l~~L~~EI~--Y~~tp 50 (170)
T TIGR02833 22 RFKERPRQLRQLIN------ALQSLEAEIV--YGHTP 50 (170)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHh--hcCCc
Confidence 34556666565444 4667777776 66654
No 193
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=21.78 E-value=1.9e+02 Score=27.70 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=26.9
Q ss_pred HHHhhhhhHHHHhHHHHHHHH-HHh-------hcchhhhhHhH
Q 026807 44 VENIRSNVDMVQHLDEFKSEM-SEK-------YGAEECWKHVF 78 (233)
Q Consensus 44 ven~rsnvd~ak~L~~lk~em-~~~-------~G~~e~~k~~f 78 (233)
.+.+.+|+-.+.++++|+..+ ..+ +|+.||...|=
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (477)
T PRK08661 399 KEFLEENTVEVDTLEEFKEAIEEKGGFVKAPWCGDEECEEKIK 441 (477)
T ss_pred HHHHHhCeEEcCCHHHHHHHHHhCCCEEEEEecCCHHHHHHHH
Confidence 466778887888999999999 332 68999877653
No 194
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.73 E-value=4.4e+02 Score=25.99 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 026807 3 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 43 (233)
Q Consensus 3 ~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~e 43 (233)
.-++||+.||..|++.|.-.|-. .|.|.|..|+-=|.-.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWG--FKALKQmiKI~f~l~~ 80 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWG--FKALKQMIKINFRLGN 80 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhH--HHHHHHHHHHHhcccc
Confidence 46899999999999999988875 5677888887655443
No 195
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=21.67 E-value=55 Score=30.73 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=18.3
Q ss_pred cccccccCcccccccCCCcceeEE
Q 026807 162 YPQVWRGQGLRKWRHSQQDGFFVQ 185 (233)
Q Consensus 162 YPQVWkgqGsRkWk~~q~dGfFVQ 185 (233)
+|..|.|.|-|-||+...||||+-
T Consensus 402 ~~~~~~~~~~~~~P~~~~dGFf~a 425 (431)
T PRK14903 402 VEGIWDGYGFLMLPDETLTPFYVS 425 (431)
T ss_pred cccccCCCcEEECcCCCCCcEEEE
Confidence 344566677888999888999975
No 196
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.64 E-value=5.1e+02 Score=25.93 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=31.3
Q ss_pred HHHhhhhhHHHHh----H-------HHHHHHHHHhhcchhhhhHhHHHHHHHHHH
Q 026807 44 VENIRSNVDMVQH----L-------DEFKSEMSEKYGAEECWKHVFSFVVETMET 87 (233)
Q Consensus 44 ven~rsnvd~ak~----L-------~~lk~em~~~~G~~e~~k~~fsF~ve~~e~ 87 (233)
|+.|++++|.|.+ | +.||.-|+. -|..|-..++..=|+|||++
T Consensus 299 l~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~-~~s~ekVed~Ldev~et~d~ 352 (439)
T KOG2911|consen 299 LETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQ-GGSTEKVEDVLDEVNETLDR 352 (439)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhc-cCChhhHHHHHHHHHHHHhh
Confidence 8889999999865 3 445566664 57777777888888887754
No 197
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=21.32 E-value=2.2e+02 Score=29.14 Aligned_cols=46 Identities=22% Similarity=0.427 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHhHHHHH-------HHHHHhhcc
Q 026807 24 VSRKIKRVSQLAKDKKRAQEVENIRSNVD-MVQHLDEFK-------SEMSEKYGA 70 (233)
Q Consensus 24 vsrKIkrlsqL~k~kkra~even~rsnvd-~ak~L~~lk-------~em~~~~G~ 70 (233)
+..+|+||+.|-.+|-+. |.+.+...+. ..++|.++. .++.+|||+
T Consensus 394 l~mrl~rlt~~e~~k~~~-e~~~l~~~i~~~~~~L~~~~~~~~~el~~l~~kyg~ 447 (635)
T PRK09631 394 LKIPIRRISLFDIDKNQK-EIRILNKELKSVEKNLKSIKGYAINFIDKLLAKYSK 447 (635)
T ss_pred HHhHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456889999988776543 3333333322 222233322 345778998
No 198
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=21.27 E-value=2.4e+02 Score=21.09 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 026807 5 DDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 37 (233)
Q Consensus 5 ~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~ 37 (233)
.|..-.|.-|..||+.++.+.+--++|.++-..
T Consensus 68 ~D~~li~~N~~~yn~~~s~~~~~a~~l~~~fe~ 100 (102)
T cd05499 68 RDVRLIFKNCYTFNPEGTDVYMMGHQLEEVFND 100 (102)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 455667888999999999999888888877654
No 199
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.22 E-value=2.8e+02 Score=29.89 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=12.1
Q ss_pred HHHHHhhhhccCCCCce
Q 026807 85 METAVKSWHETSKVDAK 101 (233)
Q Consensus 85 ~e~Avk~whe~~kvd~~ 101 (233)
|+.||.|.++.=|++|.
T Consensus 472 i~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 472 IPEAIQSYRTALKLKPD 488 (966)
T ss_pred cHHHHHHHHHHHccCCC
Confidence 45778777777777763
No 200
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=21.15 E-value=4.7e+02 Score=21.44 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 026807 3 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 45 (233)
Q Consensus 3 ~y~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k~kkra~eve 45 (233)
...+|+..|++.++.-|+|.-+..--++|..| +++--..|+.
T Consensus 105 ~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l-~~~la~~e~~ 146 (203)
T PF13525_consen 105 STRKAIEEFEELIKRYPNSEYAEEAKKRLAEL-RNRLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCchHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45789999999999999999988877888777 4444444444
No 201
>KOG4321 consensus Predicted phosphate acyltransferases [Lipid transport and metabolism]
Probab=21.03 E-value=42 Score=30.71 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=19.1
Q ss_pred eeccccccc-CCcchhhhHHHHHh
Q 026807 119 IVNVDKAFE-SPHTHGSCFQFLRQ 141 (233)
Q Consensus 119 ~VnidkAFe-SP~th~~Cf~fLRq 141 (233)
-=.|.+||. ||-|-+||++-||.
T Consensus 88 wgtiseafhvspgtvqscvsilrd 111 (279)
T KOG4321|consen 88 WGTISEAFHVSPGTVQSCVSILRD 111 (279)
T ss_pred ccchhhhhccCCccHHHHHHhhcc
Confidence 345778885 99999999999994
No 202
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=21.02 E-value=4.2e+02 Score=20.85 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=19.9
Q ss_pred HHHhHHHHHHHHHHhhcchhhhhHhHHHHHHHHHHHH
Q 026807 53 MVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAV 89 (233)
Q Consensus 53 ~ak~L~~lk~em~~~~G~~e~~k~~fsF~ve~~e~Av 89 (233)
+...|+.++.++.++|......+.-|.-...-+..+.
T Consensus 53 ~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 53 LEPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667777777766666655555544444443333
No 203
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=20.84 E-value=2.6e+02 Score=20.84 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 026807 5 DDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 36 (233)
Q Consensus 5 ~dAlaafq~Alq~npqs~EvsrKIkrlsqL~k 36 (233)
.|..-.|.-|..|||.++.+..--.+|.++-.
T Consensus 68 ~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe 99 (102)
T cd05498 68 ADVRLMFSNCYKYNPPDHPVHAMARKLQDVFE 99 (102)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45556788899999999999888777776554
No 204
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=20.11 E-value=49 Score=30.99 Aligned_cols=12 Identities=58% Similarity=0.971 Sum_probs=10.4
Q ss_pred CcceeEEecccc
Q 026807 179 QDGFFVQFESPL 190 (233)
Q Consensus 179 ~dGfFVQ~Esp~ 190 (233)
+.|+|||||++.
T Consensus 115 ~kg~FV~f~~e~ 126 (369)
T KOG0123|consen 115 SKGYFVQFESEE 126 (369)
T ss_pred ceeeEEEeCCHH
Confidence 889999999953
No 205
>TIGR00865 bcl-2 Apoptosis regulator. in artificial membranes at acidic pH, proapoptotic Bcl-2 family proteins (including Bax and Bak) probably induce the mitochondrial permeability transition and cytochrome c release by interacting with permeability transition pores, the most important component for pore fomation of which is VDAC.
Probab=20.08 E-value=6.2e+02 Score=22.47 Aligned_cols=87 Identities=13% Similarity=0.275 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-----HhHHHHHHHH--------------------HHh---hc
Q 026807 18 NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMV-----QHLDEFKSEM--------------------SEK---YG 69 (233)
Q Consensus 18 npqs~EvsrKIkrlsqL~k~kkra~even~rsnvd~a-----k~L~~lk~em--------------------~~~---~G 69 (233)
.|..++|+.-++++..-... +......+|-..+++. ..+.+...|| |.+ -|
T Consensus 61 ~~~ps~v~~~Lr~igdEle~-~~~~~f~~m~~qL~it~~~a~~~F~~Va~elF~DGiNWGRIVaLfaFgg~La~~~v~~~ 139 (213)
T TIGR00865 61 DPPPSAVHQALRRAGDEFER-RYRRAFSDMTSQLHITPFTARQSFFQVAAELFRDGVNWGRIVAFFSFGGALCVESVNKE 139 (213)
T ss_pred CCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 46677899988888765533 2233355655443322 1133333333 322 27
Q ss_pred chhhhhHhHHHHHHHHHHHHhhhhc-cCCCCceEeee
Q 026807 70 AEECWKHVFSFVVETMETAVKSWHE-TSKVDAKVYFL 105 (233)
Q Consensus 70 ~~e~~k~~fsF~ve~~e~Avk~whe-~~kvd~~V~FL 105 (233)
..++.+.+.+++.+-|...+..|-. .|--|.=+.|.
T Consensus 140 ~~~~v~~I~~wv~~yl~~~l~~WI~~nGGW~gf~~~f 176 (213)
T TIGR00865 140 MSELVSRIAGWMTEYLNEHLHPWIQENGGWDGFVELY 176 (213)
T ss_pred CchHHHHHHHHHHHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 7788889999999999999999976 55555544443
No 206
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=20.02 E-value=2.5e+02 Score=23.45 Aligned_cols=29 Identities=21% Similarity=0.558 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHhhcchh
Q 026807 36 KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE 72 (233)
Q Consensus 36 k~kkra~even~rsnvd~ak~L~~lk~em~~~~G~~e 72 (233)
+-++|.++++.++. .|+.|++|+. ||.+.
T Consensus 23 ~~~~R~~~L~~l~~------~l~~L~~EI~--Y~~tp 51 (171)
T PRK08307 23 RYKERPRQLRELKA------ALQSLEAEIM--YGHTP 51 (171)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHh--hcCCc
Confidence 34555555555443 4666666766 66544
Done!