Query 026809
Match_columns 233
No_of_seqs 305 out of 1509
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 22:43:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1au7_A Protein PIT-1, GHF-1; c 100.0 5.2E-31 1.8E-35 213.6 2.3 136 7-155 11-146 (146)
2 2xsd_C POU domain, class 3, tr 100.0 7.1E-31 2.4E-35 216.7 0.8 140 7-157 21-160 (164)
3 3l1p_A POU domain, class 5, tr 100.0 6.5E-31 2.2E-35 214.9 -0.2 137 7-154 18-154 (155)
4 3d1n_I POU domain, class 6, tr 99.9 1.7E-29 5.7E-34 205.6 2.3 139 7-153 12-150 (151)
5 1e3o_C Octamer-binding transcr 99.9 2.6E-29 9E-34 206.4 1.9 142 8-154 16-159 (160)
6 2dmt_A Homeobox protein BARH-l 99.8 9.6E-20 3.3E-24 132.8 6.2 65 87-156 13-77 (80)
7 1puf_A HOX-1.7, homeobox prote 99.8 1.2E-19 4E-24 131.5 6.2 72 81-157 3-74 (77)
8 2da3_A Alpha-fetoprotein enhan 99.8 1.2E-19 4E-24 132.0 5.2 65 87-156 13-77 (80)
9 2dms_A Homeobox protein OTX2; 99.8 1.8E-19 6.3E-24 131.3 5.9 66 89-159 5-70 (80)
10 1nk2_P Homeobox protein VND; h 99.8 2.2E-19 7.5E-24 130.0 5.5 68 86-158 4-71 (77)
11 2dmq_A LIM/homeobox protein LH 99.8 3E-19 1E-23 129.9 6.2 66 89-159 5-70 (80)
12 2kt0_A Nanog, homeobox protein 99.8 2.6E-19 8.8E-24 131.5 5.7 66 86-156 17-82 (84)
13 2da1_A Alpha-fetoprotein enhan 99.8 2E-19 6.8E-24 127.7 4.7 64 89-157 5-68 (70)
14 2dmu_A Homeobox protein goosec 99.8 3.2E-19 1.1E-23 126.7 5.6 62 90-156 6-67 (70)
15 2vi6_A Homeobox protein nanog; 99.8 1.4E-19 4.7E-24 125.7 3.5 61 90-155 2-62 (62)
16 2cra_A Homeobox protein HOX-B1 99.8 1.8E-19 6.2E-24 128.1 4.1 63 89-156 5-67 (70)
17 2l7z_A Homeobox protein HOX-A1 99.8 4.2E-19 1.4E-23 127.4 5.9 66 88-158 4-69 (73)
18 1zq3_P PRD-4, homeotic bicoid 99.8 4.5E-19 1.5E-23 125.5 5.7 64 91-159 2-65 (68)
19 1ahd_P Antennapedia protein mu 99.8 3.2E-19 1.1E-23 126.3 4.9 63 91-158 2-64 (68)
20 2da2_A Alpha-fetoprotein enhan 99.8 2.4E-19 8.4E-24 127.3 4.1 63 89-156 5-67 (70)
21 2h1k_A IPF-1, pancreatic and d 99.8 3E-19 1E-23 124.5 4.5 60 91-155 3-62 (63)
22 3a01_A Homeodomain-containing 99.8 3.8E-19 1.3E-23 133.4 5.3 69 87-160 13-81 (93)
23 1wh5_A ZF-HD homeobox family p 99.8 2.8E-19 9.4E-24 130.8 4.3 62 87-153 13-78 (80)
24 1ftt_A TTF-1 HD, thyroid trans 99.8 5.7E-19 1.9E-23 124.9 5.6 63 91-158 2-64 (68)
25 2cue_A Paired box protein PAX6 99.8 4.2E-19 1.4E-23 129.4 4.9 64 90-158 6-69 (80)
26 2hdd_A Protein (engrailed home 99.8 3.3E-19 1.1E-23 123.4 4.0 58 91-153 3-60 (61)
27 1fjl_A Paired protein; DNA-bin 99.8 5.3E-19 1.8E-23 129.1 5.0 64 88-156 15-78 (81)
28 1ig7_A Homeotic protein MSX-1; 99.7 4.8E-19 1.7E-23 121.2 4.1 57 92-153 1-57 (58)
29 2m0c_A Homeobox protein arista 99.7 9.1E-19 3.1E-23 125.6 5.6 66 88-158 6-71 (75)
30 2e1o_A Homeobox protein PRH; D 99.7 8.5E-19 2.9E-23 124.6 5.4 62 90-156 6-67 (70)
31 1jgg_A Segmentation protein EV 99.7 5.9E-19 2E-23 121.7 4.4 58 92-154 2-59 (60)
32 2djn_A Homeobox protein DLX-5; 99.7 3.8E-19 1.3E-23 126.4 3.4 62 90-156 6-67 (70)
33 1yz8_P Pituitary homeobox 2; D 99.7 3.3E-19 1.1E-23 126.0 3.0 64 90-158 2-65 (68)
34 1b8i_A Ultrabithorax, protein 99.7 5.3E-19 1.8E-23 129.3 4.2 64 88-156 17-80 (81)
35 1bw5_A ISL-1HD, insulin gene e 99.7 4.6E-19 1.6E-23 124.5 3.6 62 90-156 2-63 (66)
36 1wh7_A ZF-HD homeobox family p 99.7 5.6E-19 1.9E-23 129.2 4.1 61 87-153 13-78 (80)
37 1uhs_A HOP, homeodomain only p 99.7 2.1E-18 7.2E-23 123.2 6.1 62 92-158 2-64 (72)
38 2hi3_A Homeodomain-only protei 99.7 2.1E-18 7.2E-23 123.6 6.1 63 91-158 2-65 (73)
39 2k40_A Homeobox expressed in E 99.7 1.1E-18 3.8E-23 122.9 4.4 62 91-157 1-62 (67)
40 2r5y_A Homeotic protein sex co 99.7 8E-19 2.8E-23 130.1 3.6 63 88-155 25-87 (88)
41 2da4_A Hypothetical protein DK 99.7 1.5E-18 5.3E-23 126.3 4.7 68 87-158 4-74 (80)
42 3a02_A Homeobox protein arista 99.7 1E-18 3.5E-23 120.5 3.4 58 94-156 2-59 (60)
43 2cuf_A FLJ21616 protein; homeo 99.7 2.5E-18 8.5E-23 129.3 5.8 65 89-158 5-84 (95)
44 1b72_A Protein (homeobox prote 99.7 1.9E-18 6.4E-23 130.4 4.7 65 88-157 31-95 (97)
45 3rkq_A Homeobox protein NKX-2. 99.7 2.2E-18 7.4E-23 117.5 4.4 57 91-152 2-58 (58)
46 2da5_A Zinc fingers and homeob 99.7 6.7E-18 2.3E-22 121.7 6.3 61 93-158 9-69 (75)
47 2dn0_A Zinc fingers and homeob 99.7 4E-18 1.4E-22 123.1 4.9 63 91-158 8-70 (76)
48 1akh_A Protein (mating-type pr 99.7 2E-18 6.9E-23 119.3 3.1 59 89-152 3-61 (61)
49 3a03_A T-cell leukemia homeobo 99.7 3.1E-18 1.1E-22 116.7 3.8 54 96-154 2-55 (56)
50 2ly9_A Zinc fingers and homeob 99.7 5.5E-18 1.9E-22 121.5 5.3 64 90-158 5-68 (74)
51 3nar_A ZHX1, zinc fingers and 99.7 3.1E-18 1.1E-22 129.0 3.8 65 86-155 20-84 (96)
52 2ecc_A Homeobox and leucine zi 99.7 5.7E-18 1.9E-22 122.6 4.0 61 93-158 5-65 (76)
53 1puf_B PRE-B-cell leukemia tra 99.7 1.1E-17 3.7E-22 119.7 5.3 63 91-158 1-66 (73)
54 1x2n_A Homeobox protein pknox1 99.7 1.5E-17 5.1E-22 119.0 5.6 64 89-157 5-71 (73)
55 2da6_A Hepatocyte nuclear fact 99.7 1.8E-17 6.1E-22 126.2 5.2 70 88-158 3-89 (102)
56 2ecb_A Zinc fingers and homeob 99.7 2.4E-17 8.2E-22 122.8 5.8 57 97-158 17-73 (89)
57 1du6_A PBX1, homeobox protein 99.7 9.2E-18 3.1E-22 117.1 2.6 58 91-153 3-63 (64)
58 2dmn_A Homeobox protein TGIF2L 99.7 5.8E-17 2E-21 119.1 6.5 66 90-159 6-73 (83)
59 2dmp_A Zinc fingers and homeob 99.7 7.1E-17 2.4E-21 120.1 6.9 59 96-159 18-76 (89)
60 1b72_B Protein (PBX1); homeodo 99.7 2.6E-17 8.8E-22 121.5 4.4 62 91-157 1-65 (87)
61 1wi3_A DNA-binding protein SAT 99.7 2.2E-17 7.6E-22 116.3 3.8 59 88-151 4-63 (71)
62 1k61_A Mating-type protein alp 99.7 3.3E-17 1.1E-21 112.9 4.1 56 94-154 1-59 (60)
63 1lfb_A Liver transcription fac 99.7 1.3E-17 4.4E-22 126.6 2.0 70 88-158 6-92 (99)
64 2cqx_A LAG1 longevity assuranc 99.6 1.8E-17 6.3E-22 118.7 1.4 59 92-155 9-68 (72)
65 1mnm_C Protein (MAT alpha-2 tr 99.6 1E-16 3.5E-21 118.5 4.5 59 90-153 26-87 (87)
66 2l9r_A Homeobox protein NKX-3. 99.6 5.1E-17 1.7E-21 115.6 2.7 58 96-158 9-66 (69)
67 1le8_B Mating-type protein alp 99.6 1.3E-16 4.6E-21 117.0 3.9 57 93-154 4-63 (83)
68 3nau_A Zinc fingers and homeob 99.6 1.4E-16 4.7E-21 112.0 3.5 51 99-154 12-62 (66)
69 2e19_A Transcription factor 8; 99.6 1E-16 3.6E-21 112.3 2.8 55 95-154 7-61 (64)
70 1x2m_A LAG1 longevity assuranc 99.6 1.5E-16 5.2E-21 111.5 2.0 50 100-154 9-59 (64)
71 1ic8_A Hepatocyte nuclear fact 99.6 1.4E-16 4.7E-21 134.4 0.8 62 87-153 111-193 (194)
72 2d5v_A Hepatocyte nuclear fact 99.6 5.6E-16 1.9E-20 127.0 3.0 65 88-157 94-158 (164)
73 3k2a_A Homeobox protein MEIS2; 99.5 5.4E-15 1.8E-19 104.3 3.2 56 97-157 4-62 (67)
74 2h8r_A Hepatocyte nuclear fact 99.4 1.1E-13 3.6E-18 118.4 3.2 65 86-151 137-218 (221)
75 2da7_A Zinc finger homeobox pr 99.4 1.4E-13 4.8E-18 97.4 2.9 46 100-150 14-59 (71)
76 2lk2_A Homeobox protein TGIF1; 99.3 1.3E-12 4.6E-17 96.9 3.1 56 96-156 10-68 (89)
77 1mh3_A Maltose binding-A1 home 99.2 3E-12 1E-16 116.2 2.0 56 92-152 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.6 4.3E-09 1.5E-13 65.5 -0.1 21 138-158 1-21 (37)
79 2ys9_A Homeobox and leucine zi 92.6 0.041 1.4E-06 38.5 1.4 38 103-145 18-55 (70)
80 2glo_A Brinker CG9653-PA; prot 54.1 6.9 0.00024 25.1 2.1 46 95-146 3-48 (59)
81 1hlv_A CENP-B, major centromer 53.1 12 0.00042 27.4 3.7 49 94-150 4-52 (131)
82 2elh_A CG11849-PA, LD40883P; s 52.9 11 0.00039 26.1 3.2 45 91-145 16-60 (87)
83 2rgt_A Fusion of LIM/homeobox 49.4 0.22 7.5E-06 39.7 -7.2 30 89-119 134-163 (169)
84 3hug_A RNA polymerase sigma fa 46.1 12 0.00039 26.1 2.4 47 98-154 38-84 (92)
85 1tc3_C Protein (TC3 transposas 43.0 15 0.0005 21.4 2.2 40 97-146 5-44 (51)
86 2o8x_A Probable RNA polymerase 41.0 13 0.00046 23.9 1.9 46 97-152 15-60 (70)
87 2qko_A Possible transcriptiona 39.6 12 0.00041 29.2 1.7 42 103-150 34-75 (215)
88 1jko_C HIN recombinase, DNA-in 35.5 10 0.00035 22.6 0.5 41 98-148 6-46 (52)
89 1s7o_A Hypothetical UPF0122 pr 30.1 27 0.00093 25.7 2.2 47 98-154 23-69 (113)
90 3mzy_A RNA polymerase sigma-H 29.6 26 0.00089 25.9 2.1 47 97-154 109-155 (164)
91 3c57_A Two component transcrip 28.1 36 0.0012 23.8 2.6 45 97-152 27-71 (95)
92 3q0w_A HTH-type transcriptiona 27.9 17 0.00059 28.9 0.8 38 105-148 52-89 (236)
93 2x7l_M HIV REV; nuclear export 26.0 31 0.0011 26.0 1.9 36 104-158 16-51 (115)
94 2iai_A Putative transcriptiona 25.9 34 0.0012 26.9 2.3 41 102-148 35-75 (230)
95 2q24_A Putative TETR family tr 25.3 20 0.00068 27.3 0.8 41 101-148 19-59 (194)
96 1p4w_A RCSB; solution structur 25.2 64 0.0022 23.0 3.5 42 95-147 32-73 (99)
97 3on2_A Probable transcriptiona 24.5 34 0.0012 25.6 2.0 41 103-149 18-58 (199)
98 2i10_A Putative TETR transcrip 24.5 28 0.00097 26.8 1.5 44 101-150 15-58 (202)
99 1fi6_A EH domain protein REPS1 24.4 40 0.0014 23.1 2.1 45 96-144 1-49 (92)
100 3dcf_A Transcriptional regulat 24.0 26 0.00089 26.8 1.2 41 103-149 37-77 (218)
101 1ku3_A Sigma factor SIGA; heli 23.8 42 0.0014 22.0 2.1 46 97-152 10-59 (73)
102 3g1o_A Transcriptional regulat 23.8 29 0.001 27.8 1.5 40 103-148 49-88 (255)
103 3kz9_A SMCR; transcriptional r 23.7 33 0.0011 25.8 1.8 38 105-148 25-62 (206)
104 1fse_A GERE; helix-turn-helix 23.5 52 0.0018 21.1 2.5 45 95-150 9-53 (74)
105 2p7v_B Sigma-70, RNA polymeras 23.3 33 0.0011 22.2 1.5 48 97-150 5-52 (68)
106 3fiw_A Putative TETR-family tr 23.2 29 0.001 27.5 1.4 52 93-150 20-72 (211)
107 1je8_A Nitrate/nitrite respons 23.1 41 0.0014 22.8 2.0 44 96-150 20-63 (82)
108 2np3_A Putative TETR-family re 22.9 21 0.00071 27.6 0.4 39 103-147 36-74 (212)
109 1xsv_A Hypothetical UPF0122 pr 22.9 34 0.0012 25.0 1.6 47 98-154 26-72 (113)
110 2fq4_A Transcriptional regulat 21.4 32 0.0011 26.1 1.3 41 104-150 19-59 (192)
111 3ccy_A Putative TETR-family tr 21.2 40 0.0014 25.7 1.8 39 103-147 20-58 (203)
112 2v57_A TETR family transcripti 20.3 44 0.0015 25.0 1.8 27 118-148 31-57 (190)
No 1
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.96 E-value=5.2e-31 Score=213.63 Aligned_cols=136 Identities=20% Similarity=0.265 Sum_probs=114.9
Q ss_pred CcccccchhhhhhccCCCcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhccCCCCCCCCCCCccCC
Q 026809 7 NFQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASG 86 (233)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~~~~~lr~qi~~y~~ic~q~~~~~~~l~~~~~~~~~~~~~~~~~p~~~s~ 86 (233)
.|+|.++..+.+|+|||+++|.+||+++|+++||+|+++.+++.++|+..+.+.+|+.+.....+. +....+
T Consensus 11 ~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~~--------~~~~~~ 82 (146)
T 1au7_A 11 EFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGAL--------YNEKVG 82 (146)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC------------------
T ss_pred HHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhcccCc--------cCcccC
Confidence 378999999999999999999999999999999999999999999999999999999987643211 111123
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhh
Q 026809 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (233)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~ 155 (233)
..+++||.|+.|+..|+.+||..|..+ +||+..+|..||..| ||++++|+|||||||+|+||++
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEH-SKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhccC
Confidence 345678889999999999999999999 999999999999999 9999999999999999999853
No 2
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.96 E-value=7.1e-31 Score=216.65 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=111.6
Q ss_pred CcccccchhhhhhccCCCcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhccCCCCCCCCCCCccCC
Q 026809 7 NFQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASG 86 (233)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~~~~~lr~qi~~y~~ic~q~~~~~~~l~~~~~~~~~~~~~~~~~p~~~s~ 86 (233)
.|+|.+++.+.+|+|||+++|.+||+++|+++||+|+++.+++.++|+..+.+.+|+.+.+...+.... .....
T Consensus 21 ~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~~------~~~~~ 94 (164)
T 2xsd_C 21 QFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTN------LDKIA 94 (164)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhccccCCCcc------ccccc
Confidence 488999999999999999999999999999999999999999999999999999999987654321110 11122
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcC
Q 026809 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (233)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~ 157 (233)
..+++||.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+||..+.
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKC-PKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhccCC
Confidence 345678899999999999999999999 999999999999999 999999999999999999997654
No 3
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.96 E-value=6.5e-31 Score=214.94 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=117.6
Q ss_pred CcccccchhhhhhccCCCcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhccCCCCCCCCCCCccCC
Q 026809 7 NFQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASG 86 (233)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~~~~~lr~qi~~y~~ic~q~~~~~~~l~~~~~~~~~~~~~~~~~p~~~s~ 86 (233)
.|+|.+++.+.+|+|||+++|.|||++||+++||+|++..++++++|+..+.+.+|+.+.+...... .......
T Consensus 18 ~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~~-~~~~~~~----- 91 (155)
T 3l1p_A 18 LLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNENLQ-EISKSET----- 91 (155)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHHHH-HSSCC-------
T ss_pred HHHhhhheecccHHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHHHHhhhhhcccCcc-ccccccc-----
Confidence 3789999999999999999999999999999999999999999999999999999998876321110 0001111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhh
Q 026809 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (233)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~ 154 (233)
...+++|.|+.|+..|+..||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+||.
T Consensus 92 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 92 LVQARKRKRTSIENRVRWSLETMFLKS-PKPSLQQITHIANQL----GLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp -CCCSCCCCCCCCHHHHHHHHTTTTTC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHC-
T ss_pred cccCCCCCCcccCHHHHHHHHHHHccC-CCCCHHHHHHHHHHc----CCChhheeeccccccccccCC
Confidence 113577889999999999999999999 999999999999999 999999999999999999974
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.95 E-value=1.7e-29 Score=205.57 Aligned_cols=139 Identities=18% Similarity=0.182 Sum_probs=119.4
Q ss_pred CcccccchhhhhhccCCCcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhccCCCCCCCCCCCccCC
Q 026809 7 NFQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASG 86 (233)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~~~~~lr~qi~~y~~ic~q~~~~~~~l~~~~~~~~~~~~~~~~~p~~~s~ 86 (233)
.|+|.++..+.+|+|||+++|.+||+++|+++||+|++...++.++|...+.+.+|+.+.......... ...+ ...+
T Consensus 12 ~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~--~~~~-~~~~ 88 (151)
T 3d1n_I 12 NFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQ--NLME-FVGG 88 (151)
T ss_dssp HHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCST--THHH-HHCS
T ss_pred HHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCcc--cccc-cCCC
Confidence 488999999999999999999999999999999999999999999999999999999987642111111 0111 1122
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHh
Q 026809 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (233)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr 153 (233)
...++||.|+.|+..|+.+||..|..+ +||+..+|..||..| ||++++|+|||||||+|+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKN-PLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 345677899999999999999999999 999999999999999 99999999999999999986
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.95 E-value=2.6e-29 Score=206.35 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=112.0
Q ss_pred cccccchhhhhhccCCCcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhccCCC--CCCCCCCCccC
Q 026809 8 FQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRM--GNPYFDPFVAS 85 (233)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~~~~~lr~qi~~y~~ic~q~~~~~~~l~~~~~~~~~~~--~~~~~~p~~~s 85 (233)
|++.+++.+..|++||.++|.+||+++++++|++|+++..++.++|+..+.+.+|+.+.....+... +.+........
T Consensus 16 ~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~~~~~~~~s~~~~~~~~~ 95 (160)
T 1e3o_C 16 FKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLSSPSALNSPGI 95 (160)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcchhHHHHHHhhhcccccCCCCCCCCCcCCCCC
Confidence 6778899999999999999999999999999999999999999999999999999998764322111 11111100011
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhh
Q 026809 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (233)
Q Consensus 86 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~ 154 (233)
.+..++||.|+.|+..|+.+||..|..+ +||+..+|..||..| ||++++|+|||||||+|+||+
T Consensus 96 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 96 EGLSRRRKKRTSIETNIRVALEKSFMEN-QKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp --------CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCcCccccCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 2334678899999999999999999999 999999999999999 999999999999999999985
No 6
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.6e-20 Score=132.85 Aligned_cols=65 Identities=28% Similarity=0.351 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhc
Q 026809 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (233)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~ 156 (233)
..++.+|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++.+|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQ-KYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhcccC
Confidence 345678899999999999999999999 999999999999999 99999999999999999998654
No 7
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.79 E-value=1.2e-19 Score=131.48 Aligned_cols=72 Identities=24% Similarity=0.271 Sum_probs=65.0
Q ss_pred CCccCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcC
Q 026809 81 PFVASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (233)
Q Consensus 81 p~~~s~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~ 157 (233)
|.....+.+..++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+..+.
T Consensus 3 p~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 3 PAANWLHARSTRKKRCPYTKHQTLELEKEFLFN-MYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TTTTSCCCCTTSCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCCCCCCCCCCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhhh
Confidence 444555666788999999999999999999999 999999999999999 999999999999999999987653
No 8
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=131.98 Aligned_cols=65 Identities=31% Similarity=0.456 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhc
Q 026809 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (233)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~ 156 (233)
...+.+|.|+.|+.+|+.+||.+|..+ +||+..++.+||..| ||++.+|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLD-SNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhcc
Confidence 345678899999999999999999999 999999999999999 99999999999999999998654
No 9
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.8e-19 Score=131.27 Aligned_cols=66 Identities=29% Similarity=0.454 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCCC
Q 026809 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (233)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~~ 159 (233)
++.+|.|+.|+..|+.+||..|..+ +||+..+|..||..| +|++.+|+|||||||+|+|+..+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKT-RYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 4578899999999999999999999 999999999999999 99999999999999999999776553
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.77 E-value=2.2e-19 Score=130.02 Aligned_cols=68 Identities=25% Similarity=0.308 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 86 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
+..++.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+.....
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQ-RYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhccc
Confidence 3445678889999999999999999999 999999999999999 9999999999999999999876544
No 11
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=129.93 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCCC
Q 026809 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (233)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~~ 159 (233)
.+.+|.|+.|+..|+.+||.+|..+ +||+..++..||..| ||++.+|+|||||||+|+|++.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAIN-HNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 3478899999999999999999999 999999999999999 99999999999999999999876653
No 12
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-19 Score=131.46 Aligned_cols=66 Identities=26% Similarity=0.342 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhc
Q 026809 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (233)
Q Consensus 86 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~ 156 (233)
....+.+|.|+.|+..|+.+||..|..+ +||+..+|..||..| ||++.+|+|||||||+|+|+..+
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQ-KYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHhh
Confidence 3445678899999999999999999999 999999999999999 99999999999999999998764
No 13
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=2e-19 Score=127.72 Aligned_cols=64 Identities=20% Similarity=0.404 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcC
Q 026809 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (233)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~ 157 (233)
++.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDIN-NSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhccc
Confidence 3578899999999999999999999 999999999999999 999999999999999999987643
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-19 Score=126.73 Aligned_cols=62 Identities=29% Similarity=0.482 Sum_probs=58.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhc
Q 026809 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (233)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~ 156 (233)
..+|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQET-KYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CCCHHHeehccccccccccccCC
Confidence 467889999999999999999999 999999999999999 99999999999999999998654
No 15
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=1.4e-19 Score=125.74 Aligned_cols=61 Identities=30% Similarity=0.393 Sum_probs=53.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhh
Q 026809 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (233)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~ 155 (233)
+.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQ-KYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 367889999999999999999999 999999999999999 9999999999999999999863
No 16
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=1.8e-19 Score=128.09 Aligned_cols=63 Identities=29% Similarity=0.400 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhc
Q 026809 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (233)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~ 156 (233)
.+.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAAN-KFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccCC
Confidence 3477889999999999999999999 999999999999999 99999999999999999998653
No 17
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.76 E-value=4.2e-19 Score=127.37 Aligned_cols=66 Identities=30% Similarity=0.353 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
..+.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATN-KFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHT-SCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhC-CCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHHhccc
Confidence 34578899999999999999999999 999999999999999 9999999999999999999976554
No 18
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=4.5e-19 Score=125.46 Aligned_cols=64 Identities=28% Similarity=0.383 Sum_probs=60.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCCC
Q 026809 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (233)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~~ 159 (233)
+++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQG-RYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 57889999999999999999999 999999999999999 99999999999999999999877654
No 19
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.76 E-value=3.2e-19 Score=126.27 Aligned_cols=63 Identities=25% Similarity=0.338 Sum_probs=59.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
++|.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN-RYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccC-CCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhcccc
Confidence 57889999999999999999999 999999999999999 9999999999999999999977654
No 20
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-19 Score=127.27 Aligned_cols=63 Identities=21% Similarity=0.414 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhc
Q 026809 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (233)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~ 156 (233)
.+.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDAN-AYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhccc
Confidence 3577899999999999999999999 999999999999999 99999999999999999998654
No 21
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.76 E-value=3e-19 Score=124.50 Aligned_cols=60 Identities=28% Similarity=0.392 Sum_probs=56.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhh
Q 026809 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (233)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~ 155 (233)
.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFN-KYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 67889999999999999999999 999999999999999 9999999999999999999864
No 22
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.76 E-value=3.8e-19 Score=133.44 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCCCC
Q 026809 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVVP 160 (233)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~~~ 160 (233)
..++.++.|+.|+..|+.+||..|..+ +||+..+|..||..| ||++.+|+|||||||+|+|+.......
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~~~~ 81 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQ-KYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAEERE 81 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHHHHH
Confidence 344578899999999999999999999 999999999999999 999999999999999999998776643
No 23
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=2.8e-19 Score=130.76 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHh
Q 026809 87 SQKLTARQRWTPTPAQLQILEHVYDE----CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (233)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~----~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr 153 (233)
..++++|.||.|+..|+..||..|+. + +||+..+|++||..| ||++++|+|||||||+|.|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~-~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRI-QRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCC-CTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcC-CCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 34567889999999999999999999 8 999999999999999 99999999999999999875
No 24
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=5.7e-19 Score=124.92 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=59.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
+++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQ-KYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 57889999999999999999999 999999999999999 9999999999999999999977654
No 25
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=4.2e-19 Score=129.41 Aligned_cols=64 Identities=25% Similarity=0.431 Sum_probs=60.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
..+|.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+..+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERT-HYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 477889999999999999999999 999999999999999 9999999999999999999977554
No 26
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.76 E-value=3.3e-19 Score=123.39 Aligned_cols=58 Identities=28% Similarity=0.511 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHh
Q 026809 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (233)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr 153 (233)
.+|.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNEN-RYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 57889999999999999999999 999999999999999 99999999999999999987
No 27
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.75 E-value=5.3e-19 Score=129.12 Aligned_cols=64 Identities=28% Similarity=0.530 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhc
Q 026809 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (233)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~ 156 (233)
.++.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERT-QYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhcc
Confidence 45678899999999999999999999 999999999999999 99999999999999999998754
No 28
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=4.8e-19 Score=121.21 Aligned_cols=57 Identities=35% Similarity=0.466 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHh
Q 026809 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (233)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr 153 (233)
|+.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK-QYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 5789999999999999999999 999999999999999 99999999999999999987
No 29
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=9.1e-19 Score=125.62 Aligned_cols=66 Identities=29% Similarity=0.414 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
.++.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+..+..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r~~ 71 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKT-HYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRERFG 71 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHhhh
Confidence 34577889999999999999999999 899999999999999 9999999999999999999876553
No 30
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=8.5e-19 Score=124.61 Aligned_cols=62 Identities=26% Similarity=0.318 Sum_probs=58.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhc
Q 026809 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (233)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~ 156 (233)
..++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+...
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQ-KYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCCC
Confidence 367789999999999999999999 999999999999999 99999999999999999998764
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=5.9e-19 Score=121.74 Aligned_cols=58 Identities=31% Similarity=0.436 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhh
Q 026809 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (233)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~ 154 (233)
+|.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKE-NYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999 999999999999999 999999999999999999985
No 32
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.8e-19 Score=126.43 Aligned_cols=62 Identities=23% Similarity=0.375 Sum_probs=58.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhc
Q 026809 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (233)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~ 156 (233)
..++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKT-QYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccCC
Confidence 477889999999999999999999 999999999999999 99999999999999999988653
No 33
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.75 E-value=3.3e-19 Score=126.04 Aligned_cols=64 Identities=28% Similarity=0.436 Sum_probs=60.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
+.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+..+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRN-RYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTC-SSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 367889999999999999999999 999999999999999 9999999999999999999987654
No 34
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.75 E-value=5.3e-19 Score=129.30 Aligned_cols=64 Identities=30% Similarity=0.403 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhc
Q 026809 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (233)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~ 156 (233)
....+|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+||..+
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTN-HYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhcc
Confidence 34578899999999999999999999 999999999999999 99999999999999999998653
No 35
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=4.6e-19 Score=124.55 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhc
Q 026809 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (233)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~ 156 (233)
+.+|.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAAN-PRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHhh
Confidence 367899999999999999999999 999999999999999 99999999999999999988653
No 36
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=5.6e-19 Score=129.18 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=56.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHh
Q 026809 87 SQKLTARQRWTPTPAQLQILEHVYDE-----CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (233)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~-----~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr 153 (233)
...+.+|.||.||..|+.+|| .|.. + +||+..+|++||..| +|++++|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~-~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRI-QKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCC-CSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCC-CCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 345678899999999999999 7999 8 999999999999999 99999999999999999875
No 37
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=2.1e-18 Score=123.22 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 92 ARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~-~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
.+.|+.|+..|+.+||..|.. + +||+..+|..||..| ||++++|++||||||+|+|+.....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhccCC
Confidence 467899999999999999996 8 999999999999999 9999999999999999999987554
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=2.1e-18 Score=123.58 Aligned_cols=63 Identities=25% Similarity=0.404 Sum_probs=58.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 91 TARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~-~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
.++.|+.|+..|+.+||..|.. + +||+..+|..||..| ||++.+|++||||||+|+|+.....
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTT-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhccCC
Confidence 3567899999999999999995 8 999999999999999 9999999999999999999987544
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=122.93 Aligned_cols=62 Identities=32% Similarity=0.526 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcC
Q 026809 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (233)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~ 157 (233)
.|+.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+....
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVN-CYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhchh
Confidence 36789999999999999999999 999999999999999 999999999999999999987654
No 40
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.73 E-value=8e-19 Score=130.12 Aligned_cols=63 Identities=27% Similarity=0.362 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhh
Q 026809 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (233)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~ 155 (233)
....+|.|+.|+..|+.+||..|..+ +||+..+|..||..| ||++.+|+|||||||+|+|+..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFN-RYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 34578899999999999999999999 999999999999999 9999999999999999999864
No 41
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-18 Score=126.35 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 87 SQKLTARQRWTPTPAQLQILEHVYDECK---GTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~---~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
..++.+|.|+.|+..|+.+||.+|+.++ +||+..+|.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~~~~ 74 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMGIEV 74 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhccCCC
Confidence 3456788999999999999999998772 699999999999999 9999999999999999999965443
No 42
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.73 E-value=1e-18 Score=120.50 Aligned_cols=58 Identities=26% Similarity=0.485 Sum_probs=50.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhc
Q 026809 94 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (233)
Q Consensus 94 ~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~ 156 (233)
+|+.||..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT-HYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhcc
Confidence 58999999999999999999 999999999999999 99999999999999999998653
No 43
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=2.5e-18 Score=129.25 Aligned_cols=65 Identities=26% Similarity=0.488 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCC---------------CcccceeeccccchhhHHh
Q 026809 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQ---------------ISETNVYNWFQNRRARLKR 153 (233)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~g---------------ls~~qV~vWFQNRR~k~Kr 153 (233)
++.+|.|+.|++.|+.+||.+|+.+ +||+..+|++||..| + |++.+|++||||||+|+|+
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~-~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNEN-QYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999 999999999999999 8 9999999999999999999
Q ss_pred hhcCC
Q 026809 154 KQSGV 158 (233)
Q Consensus 154 ~~~~~ 158 (233)
+....
T Consensus 80 ~~~~~ 84 (95)
T 2cuf_A 80 RANIA 84 (95)
T ss_dssp HHHCC
T ss_pred Hhhcc
Confidence 88775
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.9e-18 Score=130.41 Aligned_cols=65 Identities=28% Similarity=0.356 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcC
Q 026809 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (233)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~ 157 (233)
....++.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+|+..+.
T Consensus 31 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 31 LGSPSGLRTNFTTRQLTELEKEFHFN-KYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhcc
Confidence 34578899999999999999999999 999999999999999 999999999999999999998754
No 45
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.72 E-value=2.2e-18 Score=117.55 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHH
Q 026809 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (233)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~K 152 (233)
+++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQ-RYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 56789999999999999999999 999999999999999 9999999999999999975
No 46
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.7e-18 Score=121.68 Aligned_cols=61 Identities=18% Similarity=0.451 Sum_probs=56.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 93 RQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 93 r~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
++|..||..|+.+||..|..+ +||+..+|..||..| ||++++|+|||||||+|+|++.+..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQN-PLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 456679999999999999999 999999999999999 9999999999999999999977654
No 47
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4e-18 Score=123.05 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=58.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
+.+.|+.||..|+.+||..|..+ +||+..++.+||..| ||++++|++||||||+|+|+.....
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRN-QFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHS-SSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCccCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhcccC
Confidence 45568999999999999999999 999999999999999 9999999999999999999866543
No 48
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.71 E-value=2e-18 Score=119.25 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHH
Q 026809 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (233)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~K 152 (233)
++.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~-~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRK-QSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 3567889999999999999999999 999999999999999 9999999999999999975
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.71 E-value=3.1e-18 Score=116.68 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhh
Q 026809 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (233)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~ 154 (233)
|.|+..|+..||..|..+ +||+..+|.+||..| ||++++|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQ-KYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhc-CCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999 999999999999999 999999999999999999985
No 50
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=5.5e-18 Score=121.49 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=59.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
..++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|+.+...
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKN-QFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCcCC
Confidence 357789999999999999999999 999999999999999 9999999999999999999876543
No 51
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.71 E-value=3.1e-18 Score=129.04 Aligned_cols=65 Identities=18% Similarity=0.372 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhh
Q 026809 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (233)
Q Consensus 86 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~ 155 (233)
++....+|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|++||||||+|+|+..
T Consensus 20 ~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 20 APKSGSTGKICKKTPEQLHMLKSAFVRT-QWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -------CCSSSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhc
Confidence 3444567889999999999999999999 999999999999999 9999999999999999999864
No 52
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=5.7e-18 Score=122.58 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=56.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 93 RQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 93 r~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
..|..||.+|+.+||..|..+ +||+..+|++||..| ||++++|+|||||||+|+|+....-
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~-~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQC-QWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 346679999999999999999 999999999999999 9999999999999999999875544
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=1.1e-17 Score=119.74 Aligned_cols=63 Identities=22% Similarity=0.396 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 91 TARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F---~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
+||.|+.|+..|+.+||.+| ..+ +||+..++..||..| ||++.+|++||||||+|+|+.....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcccccccc
Confidence 36789999999999999999 777 999999999999999 9999999999999999999866543
No 54
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.5e-17 Score=119.00 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcC
Q 026809 89 KLTARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (233)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~---~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~ 157 (233)
++.++.|+.|+..|+.+||.+|.. + +||+..++.+||..| ||++.+|++||||||+|+|+....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGH-PYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccccc
Confidence 346788999999999999999987 6 999999999999999 999999999999999999986543
No 55
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=126.17 Aligned_cols=70 Identities=34% Similarity=0.547 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-------------hhC----CCcccceeeccccchhh
Q 026809 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELA-------------KHG----QISETNVYNWFQNRRAR 150 (233)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~-------------~~~----gls~~qV~vWFQNRR~k 150 (233)
.++.||.|+.|++.|+.+||..|+.+ +||+..+|++||..|. .|| .|++.+|+|||||||++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~-~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 34578899999999999999999999 8999999999999993 244 79999999999999999
Q ss_pred HHhhhcCC
Q 026809 151 LKRKQSGV 158 (233)
Q Consensus 151 ~Kr~~~~~ 158 (233)
+|++.+..
T Consensus 82 ~kr~~~~~ 89 (102)
T 2da6_A 82 EAFRQKLA 89 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHhhHhh
Confidence 99987655
No 56
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=2.4e-17 Score=122.81 Aligned_cols=57 Identities=14% Similarity=0.376 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
.||..||.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+|++....
T Consensus 17 ~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNS-SVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHHHh
Confidence 78999999999999999 999999999999999 9999999999999999998866544
No 57
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=9.2e-18 Score=117.08 Aligned_cols=58 Identities=21% Similarity=0.360 Sum_probs=55.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHh
Q 026809 91 TARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (233)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F---~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr 153 (233)
.++.|+.|+..|+.+||.+| ..+ +||+..++..||..| ||++.+|++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 57889999999999999999 777 999999999999999 99999999999999999886
No 58
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.67 E-value=5.8e-17 Score=119.05 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=59.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCCC
Q 026809 90 LTARQRWTPTPAQLQILEHVYDEC--KGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (233)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~~--~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~~ 159 (233)
+.+++|+.|+..|+.+||.+|..+ ++||+..++.+||..+ ||++.+|++||||||+|+|+......
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~~~~~ 73 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDMLQQR 73 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHHTCCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHHHHhc
Confidence 467789999999999999999873 4899999999999999 99999999999999999998766553
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7.1e-17 Score=120.10 Aligned_cols=59 Identities=22% Similarity=0.434 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCCC
Q 026809 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (233)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~~ 159 (233)
..+|..||.+||..|..+ +||+..+|..||..| ||++++|+|||||||+|+|+......
T Consensus 18 k~~t~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKS-SFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred ccCCHHHHHHHHHHHccC-CCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 348999999999999999 999999999999999 99999999999999999988776553
No 60
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.67 E-value=2.6e-17 Score=121.48 Aligned_cols=62 Identities=23% Similarity=0.402 Sum_probs=56.6
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcC
Q 026809 91 TARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (233)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F---~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~ 157 (233)
+||.|+.|+..|+.+||.+| ..+ +||+..++..||..| ||++.+|++||||||+|+|+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~-~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTS-CCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhcccc
Confidence 36789999999999999999 777 999999999999999 999999999999999999986644
No 61
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=2.2e-17 Score=116.32 Aligned_cols=59 Identities=22% Similarity=0.371 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhH
Q 026809 88 QKLTARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (233)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~-~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~ 151 (233)
.+.++|.||.|+.+||.+|+.+|+. + +||+.+.|+.||.+| ||++++|+|||||||--.
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~-~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVG-LYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CCCHHHHHHhhccceeee
Confidence 4468899999999999999999999 7 999999999999999 999999999999999754
No 62
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.66 E-value=3.3e-17 Score=112.85 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhh
Q 026809 94 QRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (233)
Q Consensus 94 ~Rt~~t~~Ql~~Le~~F~~---~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~ 154 (233)
+|+.|+..|+.+||..|.. + +||+..++..||..+ ||++.+|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHcccccC
Confidence 3688999999999999999 7 999999999999999 999999999999999999874
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.66 E-value=1.3e-17 Score=126.64 Aligned_cols=70 Identities=30% Similarity=0.461 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh--------------CC---Ccccceeeccccchhh
Q 026809 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKH--------------GQ---ISETNVYNWFQNRRAR 150 (233)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~--------------~g---ls~~qV~vWFQNRR~k 150 (233)
.++.||.|+.|++.|+.+||..|+.+ +||+..+|++||..|... .| |++.+|+|||||||++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~-~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34678899999999999999999999 999999999999992100 17 9999999999999999
Q ss_pred HHhhhcCC
Q 026809 151 LKRKQSGV 158 (233)
Q Consensus 151 ~Kr~~~~~ 158 (233)
+|++.+..
T Consensus 85 ~k~k~~~~ 92 (99)
T 1lfb_A 85 EAFRHKLA 92 (99)
T ss_dssp TSCCC---
T ss_pred HHHhchhh
Confidence 98776554
No 64
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=1.8e-17 Score=118.72 Aligned_cols=59 Identities=19% Similarity=0.352 Sum_probs=52.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhh
Q 026809 92 ARQRWTPTPAQLQILEHVY-DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (233)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F-~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~ 155 (233)
.+.|..++..|+.+||..| ..+ +||+..+|.+||..| ||++++|+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~-~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVT-KYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCCCC
Confidence 3445567788999999999 888 999999999999999 9999999999999999998743
No 65
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.64 E-value=1e-16 Score=118.48 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=55.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHh
Q 026809 90 LTARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (233)
Q Consensus 90 ~~rr~Rt~~t~~Ql~~Le~~F~~---~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr 153 (233)
.++++|+.|+..|+.+||.+|.. + +||+..++..||..| ||++.+|++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccC
Confidence 35667899999999999999999 8 999999999999999 99999999999999999873
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=5.1e-17 Score=115.61 Aligned_cols=58 Identities=29% Similarity=0.371 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
...+..|+..||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+||+....
T Consensus 9 ~~~t~~ql~~LE~~F~~~-~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQ-KYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred CcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhhhh
Confidence 467999999999999999 999999999999999 9999999999999999999866543
No 67
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.63 E-value=1.3e-16 Score=116.97 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=53.1
Q ss_pred CCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhh
Q 026809 93 RQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (233)
Q Consensus 93 r~Rt~~t~~Ql~~Le~~F~~---~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~ 154 (233)
+.|+.|+..|+.+||.+|.. + +||+..++..||..| ||++.+|++||||||+|+|+.
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~-~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHHH----CCCHHHcccccHHHHcccccc
Confidence 45666999999999999999 8 999999999999999 999999999999999999885
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.62 E-value=1.4e-16 Score=112.01 Aligned_cols=51 Identities=18% Similarity=0.390 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhh
Q 026809 99 TPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (233)
Q Consensus 99 t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~ 154 (233)
+..||.+||..|..+ +||+..+|.+||..| ||++++|++||||||+|+|+.
T Consensus 12 ~~~Ql~~LE~~F~~~-~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 12 TKEQIAHLKASFLQS-QFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CHHHHHHHHHHHHGG-GSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhcc
Confidence 789999999999999 999999999999999 999999999999999999974
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1e-16 Score=112.29 Aligned_cols=55 Identities=16% Similarity=0.319 Sum_probs=50.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhh
Q 026809 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (233)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~ 154 (233)
+..++..|+..||..|..+ +||+..+|.+||..| ||++++|+|||||||+|.++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALN-AQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCCC
Confidence 3456799999999999999 999999999999999 999999999999999997763
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=1.5e-16 Score=111.48 Aligned_cols=50 Identities=22% Similarity=0.490 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhh
Q 026809 100 PAQLQILEHVYD-ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (233)
Q Consensus 100 ~~Ql~~Le~~F~-~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~ 154 (233)
+.++.+||+.|. .+ +||+..+|.+||++| ||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~-~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAIT-KHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcC-CCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCCC
Confidence 457999999995 56 899999999999999 999999999999999999863
No 71
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.59 E-value=1.4e-16 Score=134.44 Aligned_cols=62 Identities=34% Similarity=0.548 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCC---------------------Ccccceeeccc
Q 026809 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQ---------------------ISETNVYNWFQ 145 (233)
Q Consensus 87 ~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~g---------------------ls~~qV~vWFQ 145 (233)
..++.||.|+.|++.|+.+||..|..+ +||+..+|++||..| + |++.+|++|||
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~-~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFq 185 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFA 185 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHH-CCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CchhhccccccccccccccccccCccccchhch
Confidence 446678999999999999999999999 999999999999999 8 99999999999
Q ss_pred cchhhHHh
Q 026809 146 NRRARLKR 153 (233)
Q Consensus 146 NRR~k~Kr 153 (233)
|||++.|.
T Consensus 186 NRR~~~k~ 193 (194)
T 1ic8_A 186 NRRKEEAF 193 (194)
T ss_dssp HHHHHCC-
T ss_pred hhhhhhhc
Confidence 99999875
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.57 E-value=5.6e-16 Score=127.02 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcC
Q 026809 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (233)
Q Consensus 88 ~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~ 157 (233)
..+.||.|+.|+..|+.+||..|..+ +||+..+|..||..| ||++.+|+|||||||+|+|+....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKEN-KRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccCCC
Confidence 34578899999999999999999999 999999999999999 999999999999999999875543
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=5.4e-15 Score=104.31 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcC
Q 026809 97 TPTPAQLQILEHVYD---ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (233)
Q Consensus 97 ~~t~~Ql~~Le~~F~---~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~ 157 (233)
.|+.+|+.+|+.+|. .+ +||+..++.+||..+ ||++.+|++||||||+|.|+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~-pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTH-PYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHHHH
Confidence 689999999999999 78 999999999999999 999999999999999999886543
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.38 E-value=1.1e-13 Score=118.44 Aligned_cols=65 Identities=35% Similarity=0.593 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-------------h----CCCcccceeeccccch
Q 026809 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAK-------------H----GQISETNVYNWFQNRR 148 (233)
Q Consensus 86 ~~~~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~-------------~----~gls~~qV~vWFQNRR 148 (233)
+..++.||.|+.|++.|+.+||..|..+ +||+..+|++||..|.. | ..|++.+|++||+|||
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~-~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 3456788999999999999999999999 99999999999999821 0 1289999999999999
Q ss_pred hhH
Q 026809 149 ARL 151 (233)
Q Consensus 149 ~k~ 151 (233)
++.
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 875
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-13 Score=97.42 Aligned_cols=46 Identities=15% Similarity=0.427 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhh
Q 026809 100 PAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (233)
Q Consensus 100 ~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k 150 (233)
.+|+..||.+|..+ ++|+.+++..||..+ ||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n-~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMN-MEPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 57899999999999 899999999999999 99999999999999984
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.27 E-value=1.3e-12 Score=96.91 Aligned_cols=56 Identities=27% Similarity=0.340 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhc
Q 026809 96 WTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (233)
Q Consensus 96 t~~t~~Ql~~Le~~F~~---~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~ 156 (233)
-.++..++.+|+.+|.. + +||+..++.+||..+ ||++.||++||+|+|.|.++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~n-pYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYN-AYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGG-GSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhHHH
Confidence 46889999999999987 6 999999999999999 99999999999999999987654
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.20 E-value=3e-12 Score=116.24 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHH
Q 026809 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (233)
Q Consensus 92 rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~K 152 (233)
++.|+.++..|+..||+.|+.+ +||+..+|.+||.+| ||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~-~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRK-QSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcC-CCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 3557789999999999999999 999999999999999 9999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.61 E-value=4.3e-09 Score=65.55 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.5
Q ss_pred cceeeccccchhhHHhhhcCC
Q 026809 138 TNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 138 ~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
+||+|||||||+|+|++....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999987664
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.62 E-value=0.041 Score=38.46 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccc
Q 026809 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 145 (233)
Q Consensus 103 l~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQ 145 (233)
...|+.+|... +.+...+...|+.+. .|+-.+|+-||-
T Consensus 18 ~e~L~~Yy~~h-k~L~EeDl~~L~~ks----kms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAAH-QQLRETDIPQLSQAS----RLSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHHT-CCCCTTHHHHHHHHT----TCCHHHHHHHHH
T ss_pred chHHHHHHHHh-cccchhhHHHHHHHh----CCCHHHHHHHHH
Confidence 35999999999 889999999999999 999999999995
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=54.12 E-value=6.9 Score=25.14 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeecccc
Q 026809 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (233)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQN 146 (233)
|..|+++....+..++... .+......++|..+ ||+...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g--~s~~~~~~~vA~~~----gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND--NDCKGNQRATARKY----NIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC--TTTTTCHHHHHHHT----TSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC--CCcchHHHHHHHHH----CcCHHHHHHHHHH
Confidence 4568888877665555444 33222356899999 9999999999753
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=53.12 E-value=12 Score=27.44 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhh
Q 026809 94 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (233)
Q Consensus 94 ~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k 150 (233)
+|..+|.++...+-..+..+ ..+.. .+||+.+ |++...|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~-g~~~~---~~~A~~~----gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEEN-PDLRK---GEIARRF----NIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHC-TTSCH---HHHHHHH----TCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHC-CCCcH---HHHHHHh----CCCHHHHHHHHhchhhh
Confidence 56789999987777777544 44443 3689999 99999999999876654
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=52.88 E-value=11 Score=26.11 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=31.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccc
Q 026809 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 145 (233)
Q Consensus 91 ~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQ 145 (233)
.++.+..++.++....-..+... . + ..+||+.+ |++...|+.|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g--~-s---~~~iA~~~----gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG--E-S---KASVARDI----GVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT--C-C---HHHHHHHH----TCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC--C-C---HHHHHHHH----CcCHHHHHHHHH
Confidence 34456678888865555556433 2 2 44889999 999999999974
No 83
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=49.37 E-value=0.22 Score=39.72 Aligned_cols=30 Identities=3% Similarity=-0.226 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCH
Q 026809 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRK 119 (233)
Q Consensus 89 ~~~rr~Rt~~t~~Ql~~Le~~F~~~~~~P~~ 119 (233)
...+|.||.|+..|+..|+..|+.+ +||+.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~-~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQAN-PVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCC-CCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCC-CCccc
Confidence 3467889999999999999999998 88875
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=46.14 E-value=12 Score=26.13 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhh
Q 026809 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (233)
Q Consensus 98 ~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~ 154 (233)
+++.+..+|.-.|-.. + ...+||..| |++...|+.+...=|.+.|+.
T Consensus 38 L~~~~r~vl~l~~~~g--~----s~~eIA~~l----gis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG--W----STAQIATDL----GIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp SCHHHHHHHHHHHTSC--C----CHHHHHHHH----TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 4677778887766554 2 235899999 999999999887666665553
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=42.98 E-value=15 Score=21.44 Aligned_cols=40 Identities=8% Similarity=0.132 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeecccc
Q 026809 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (233)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQN 146 (233)
.+++.+...+...+... + + ..+||+.| |++...|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~g--~-s---~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN--V-S---LHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT--C-C---HHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC--C-C---HHHHHHHH----CcCHHHHHHHHhh
Confidence 46676665555556444 2 2 45889999 9999999999753
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=40.97 E-value=13 Score=23.85 Aligned_cols=46 Identities=15% Similarity=-0.043 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHH
Q 026809 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (233)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~K 152 (233)
.+++.+..+|...|... ++ ..+||..+ |++...|+.+...=+.+.+
T Consensus 15 ~L~~~~r~il~l~~~~g--~s----~~eIA~~l----gis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG--LS----YADAAAVC----GCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC--CC----HHHHHHHH----TSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHH
Confidence 36788888888876544 22 34899999 9999999988765444443
No 87
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=39.60 E-value=12 Score=29.15 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhh
Q 026809 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (233)
Q Consensus 103 l~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k 150 (233)
+......|... .| .......||+.. |++..-|+..|.|+-.=
T Consensus 34 l~aa~~lf~~~-G~-~~~tv~~IA~~a----gvs~~t~Y~~F~sK~~L 75 (215)
T 2qko_A 34 VNAAIEVLARE-GA-RGLTFRAVDVEA----NVPKGTASNYFPSRDDL 75 (215)
T ss_dssp HHHHHHHHHHT-CT-TTCCHHHHHHHS----SSTTTCHHHHCSCHHHH
T ss_pred HHHHHHHHHHh-Ch-hhccHHHHHHHc----CCCcchHHHhCCCHHHH
Confidence 34445557776 54 444567899999 99999999999997543
No 88
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=35.52 E-value=10 Score=22.62 Aligned_cols=41 Identities=10% Similarity=0.233 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccch
Q 026809 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (233)
Q Consensus 98 ~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (233)
+++++...+...+... .+ ..+||+.+ |++...|..|+....
T Consensus 6 ~~~~~~~~i~~l~~~g---~s---~~~ia~~l----gvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG---HP---RQQLAIIF----GIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT---CC---HHHHHHTT----SCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC---CC---HHHHHHHH----CCCHHHHHHHHHHcc
Confidence 4455555555555433 22 45789999 999999999996543
No 89
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=30.14 E-value=27 Score=25.68 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhh
Q 026809 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (233)
Q Consensus 98 ~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~ 154 (233)
+++.+..+|.-.|... +. ..+||..+ |++...|+.|...-|.+.++.
T Consensus 23 L~~~~r~vl~l~y~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 23 LTDKQMNYIELYYADD--YS----LAEIADEF----GVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp SCHHHHHHHHHHHHTC--CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 5788888888876555 22 34899999 999999999988766665543
No 90
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.56 E-value=26 Score=25.85 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhh
Q 026809 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (233)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~ 154 (233)
.+++.+..+|. .|-.. + ...+||..| |++...|+.+...=|.+.|+.
T Consensus 109 ~L~~~~r~v~~-~~~~g--~----s~~EIA~~l----gis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG--Y----SYREIATIL----SKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTTT--C----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC--C----CHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Confidence 45666677777 44433 2 234899999 999999998887655555543
No 91
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=28.15 E-value=36 Score=23.81 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHH
Q 026809 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (233)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~K 152 (233)
.+++.+..+|.-.++ . +. ..+||..| |++...|+.+..+=+.|.+
T Consensus 27 ~Lt~~e~~vl~l~~~-g--~s----~~eIA~~l----~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLSE-G--LT----NKQIADRM----FLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHHT-T--CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHc-C--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHc
Confidence 578899999988643 2 22 25899999 9999999987765444443
No 92
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=27.94 E-value=17 Score=28.86 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=28.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccch
Q 026809 105 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (233)
Q Consensus 105 ~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (233)
.-...|... . ........||+.. |++..-|+..|.||-
T Consensus 52 aA~~lf~e~-G-~~~~t~~~IA~~a----Gvs~~tlY~~F~sK~ 89 (236)
T 3q0w_A 52 TAENLLEDR-P-LADISVDDLAKGA----GISRPTFYFYFPSKE 89 (236)
T ss_dssp HHHHHHHHS-C-GGGCCHHHHHHHH----TCCHHHHHHHCSSHH
T ss_pred HHHHHHHHc-C-cccCCHHHHHHHh----CCcHHHHHHHCCCHH
Confidence 334447666 5 3344567899999 999999999999974
No 93
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=25.97 E-value=31 Score=25.96 Aligned_cols=36 Identities=19% Similarity=0.500 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhhhcCC
Q 026809 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (233)
Q Consensus 104 ~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~~~~~ 158 (233)
.+++-.|+.| +||... |-.... .|||.+|+.++.+-
T Consensus 16 RiIkiLyQSN-PyP~pe-------------GTRqaR-----RNRRRRWR~RQrQI 51 (115)
T 2x7l_M 16 RLIKFLYQSN-PPPNPE-------------GTRQAR-----RNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHSS-CCCCCC-------------CCTTTH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHccC-CCCCCC-------------Cchhhh-----HhHHHHHHHHHHHH
Confidence 3455568777 899873 322211 58999998877653
No 94
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=25.95 E-value=34 Score=26.91 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccch
Q 026809 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (233)
Q Consensus 102 Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (233)
-+......|... .| .......||+.. |++..-|+..|.++-
T Consensus 35 Il~aA~~lf~~~-G~-~~~t~~~IA~~A----gvs~~t~Y~~F~sKe 75 (230)
T 2iai_A 35 LLSVAVQVFIER-GY-DGTSMEHLSKAA----GISKSSIYHHVTGKE 75 (230)
T ss_dssp HHHHHHHHHHHH-CT-TTCCHHHHHHHH----TSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHHc-Cc-cccCHHHHHHHH----CCChhHHHHhCCCHH
Confidence 355666667777 54 334567899999 999999999999973
No 95
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=25.28 E-value=20 Score=27.29 Aligned_cols=41 Identities=20% Similarity=0.352 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccch
Q 026809 101 AQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (233)
Q Consensus 101 ~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (233)
.-+..-...|... .| . .....||+.. |++..-|+..|.||-
T Consensus 19 ~Il~aA~~lf~~~-G~-~-~s~~~IA~~a----gvs~~tlY~~F~sK~ 59 (194)
T 2q24_A 19 KILAAAVRVFSEE-GL-D-AHLERIAREA----GVGSGTLYRNFPTRE 59 (194)
T ss_dssp HHHHHHHHHHHHH-CT-T-CCHHHHHHHT----TCCHHHHHHHCCSHH
T ss_pred HHHHHHHHHHHhc-Cc-C-CCHHHHHHHh----CCChHHHHHHcCCHH
Confidence 3344555668877 66 5 6888999999 999999999999973
No 96
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.24 E-value=64 Score=23.00 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccc
Q 026809 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNR 147 (233)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNR 147 (233)
...+++.++.+|.-++ .. +. ..+||..| ++++..|+.+..+=
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G--~s----~~EIA~~L----~iS~~TV~~~l~ri 73 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EG--FL----VTEIAKKL----NRSIKTISSQKKSA 73 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HT--CC----HHHHHHHH----TSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cC--CC----HHHHHHHH----CcCHHHHHHHHHHH
Confidence 4568999999998765 33 22 25899999 99999999877643
No 97
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=24.50 E-value=34 Score=25.57 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchh
Q 026809 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (233)
Q Consensus 103 l~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~ 149 (233)
+..-...|... . ........||+.. |++..-|+..|.||-.
T Consensus 18 l~aA~~lf~~~-G-~~~~t~~~IA~~a----gvs~~t~Y~~F~sK~~ 58 (199)
T 3on2_A 18 LARAESTLEKD-G-VDGLSLRQLAREA----GVSHAAPSKHFRDRQA 58 (199)
T ss_dssp HHHHHHHHHHH-C-GGGCCHHHHHHHT----C-----CCCSSSSHHH
T ss_pred HHHHHHHHHhc-C-hhhhhHHHHHHHh----CCChHHHHHHhCCHHH
Confidence 44445557766 5 3334567899999 9999999999999743
No 98
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.45 E-value=28 Score=26.84 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhh
Q 026809 101 AQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (233)
Q Consensus 101 ~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k 150 (233)
.-+..-...|... .|- ......||+.. |++..-|+..|.||-.=
T Consensus 15 ~Il~aA~~lF~~~-Gy~-~ts~~~IA~~a----Gvsk~tlY~~F~sKe~L 58 (202)
T 2i10_A 15 VALQTAMELFWRQ-GYE-GTSITDLTKAL----GINPPSLYAAFGSKRDL 58 (202)
T ss_dssp HHHHHHHHHHHHH-TTT-TCCHHHHHHHH----TCCHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHHHHh-Ccc-cCCHHHHHHHh----CCChHHHHHHhCCHHHH
Confidence 3444555668777 543 33567899999 99999999999997443
No 99
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.37 E-value=40 Score=23.07 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHhhCCCcccceeecc
Q 026809 96 WTPTPAQLQILEHVYDEC----KGTPRKQKIQDMTAELAKHGQISETNVYNWF 144 (233)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~----~~~P~~~~r~~LA~~L~~~~gls~~qV~vWF 144 (233)
|.+++++...+...|..- +.+.+..+...+...+ |++...+...|
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~ 49 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS----KLPILELSHIW 49 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH----SSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc----CCCHHHHHHHH
Confidence 567889999999999642 2467778777777777 88776665554
No 100
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=23.97 E-value=26 Score=26.77 Aligned_cols=41 Identities=12% Similarity=0.482 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchh
Q 026809 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (233)
Q Consensus 103 l~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~ 149 (233)
+......|... .| .......||+.. |++..-++.+|.+|-.
T Consensus 37 l~aa~~l~~~~-G~-~~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 37 IKVATELFREK-GY-YATSLDDIADRI----GFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHT-CT-TTCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHc-Cc-ccCcHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 34445557776 54 344567899999 9999999999999743
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=23.84 E-value=42 Score=21.96 Aligned_cols=46 Identities=9% Similarity=0.111 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHH
Q 026809 97 TPTPAQLQILEHVYD----ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (233)
Q Consensus 97 ~~t~~Ql~~Le~~F~----~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~K 152 (233)
.+++.+..+|...|- .. . .-.+||..| |++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~---~---s~~eIA~~l----~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGRE---H---TLEEVGAYF----GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC---C---CHHHHHHHH----TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCC---C---CHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 468889999988885 33 1 234899999 9999999988765444444
No 102
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=23.81 E-value=29 Score=27.80 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccch
Q 026809 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (233)
Q Consensus 103 l~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (233)
+......|... . ........||+.. |++..-|+..|.||-
T Consensus 49 l~AA~~lf~~~-G-~~~~t~~~IA~~a----Gvs~~tlY~~F~sK~ 88 (255)
T 3g1o_A 49 LATAENLLEDR-P-LADISVDDLAKGA----GISRPTFYFYFPSKE 88 (255)
T ss_dssp HHHHHHHHTTS-C-GGGCCHHHHHHHH----TCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHc-C-CccCcHHHHHHHh----CCCHHHHHHHcCCHH
Confidence 33444457666 4 3344567899999 999999999999974
No 103
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=23.70 E-value=33 Score=25.79 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccch
Q 026809 105 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (233)
Q Consensus 105 ~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (233)
.....|... .| .......||+.. |++..-|+..|.|+-
T Consensus 25 aa~~l~~~~-G~-~~~s~~~Ia~~a----gvs~~t~Y~~F~sK~ 62 (206)
T 3kz9_A 25 IALEVFARR-GI-GRGGHADIAEIA----QVSVATVFNYFPTRE 62 (206)
T ss_dssp HHHHHHHHS-CC-SSCCHHHHHHHH----TSCHHHHHHHCCSHH
T ss_pred HHHHHHHhc-Cc-ccccHHHHHHHh----CCCHHHHHHHcCCHH
Confidence 344457776 54 334567899999 999999999999973
No 104
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=23.50 E-value=52 Score=21.07 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhh
Q 026809 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (233)
Q Consensus 95 Rt~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k 150 (233)
-..+++.+..+|..++ .. + + ..+||..+ |++...|+.+..+=+.|
T Consensus 9 ~~~L~~~e~~il~~~~-~g--~-s---~~eIA~~l----~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 9 KPLLTKREREVFELLV-QD--K-T---TKEIASEL----FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCCHHHHHHHHHHT-TT--C-C---HHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-cC--C-C---HHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 3457899999998843 33 2 2 34899999 99999998877643333
No 105
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=23.30 E-value=33 Score=22.18 Aligned_cols=48 Identities=4% Similarity=0.095 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhh
Q 026809 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (233)
Q Consensus 97 ~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k 150 (233)
.+++.+..+|...|-.. .+ ....-.+||..| |++...|+.+...=+.|
T Consensus 5 ~L~~~er~il~l~~~l~-~~-~g~s~~eIA~~l----gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGID-MN-TDYTLEEVGKQF----DVTRERIRQIEAKALRK 52 (68)
T ss_dssp CCCHHHHHHHHHHTTTT-SS-SCCCHHHHHHHH----TCCHHHHHHHHHHHHHG
T ss_pred cCCHHHHHHHHHHHccC-CC-CCCCHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 46788888998888221 00 011235899999 99999998876543333
No 106
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=23.21 E-value=29 Score=27.52 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=33.7
Q ss_pred CCCCCCCHHH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhh
Q 026809 93 RQRWTPTPAQ-LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (233)
Q Consensus 93 r~Rt~~t~~Q-l~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k 150 (233)
+.|...+.+. +......|... . ........||+.+ |++..-|+..|.||-.=
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~-G-~~~~s~~~IA~~a----Gvs~~tlY~~F~~K~~L 72 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEV-G-LDGVSTRRLAKRL----GVEQPSLYWYFRTKRDL 72 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHH-C-GGGCCHHHHHHHH----TSCTHHHHTTCSSHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhc-C-cccCCHHHHHHHh----CCChhHHHHHcCCHHHH
Confidence 3444455543 34455557766 5 3344567899999 99999999999987543
No 107
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.12 E-value=41 Score=22.83 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhh
Q 026809 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (233)
Q Consensus 96 t~~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k 150 (233)
..+++.+..+|.-++ .. + ...+||..| |++...|+.+..+=+.|
T Consensus 20 ~~Lt~~e~~vl~l~~-~g--~----s~~eIA~~l----~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 20 NQLTPRERDILKLIA-QG--L----PNKMIARRL----DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GGSCHHHHHHHHHHT-TT--C----CHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH-cC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 458899999998853 22 2 234899999 99999998876543333
No 108
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.90 E-value=21 Score=27.62 Aligned_cols=39 Identities=10% Similarity=0.264 Sum_probs=7.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccc
Q 026809 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNR 147 (233)
Q Consensus 103 l~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNR 147 (233)
+......|... . ........||+.. |++..-|+..|.+|
T Consensus 36 l~aa~~l~~~~-G-~~~~ti~~IA~~a----gvs~~t~Y~~F~sK 74 (212)
T 2np3_A 36 LTAARVCFAER-G-FDATSLRRIAETA----GVDQSLVHHFYGTK 74 (212)
T ss_dssp HHHHHHHC---------------------------------CCC-
T ss_pred HHHHHHHHHHc-C-cccccHHHHHHHc----CCCHHHHHHHhCCH
Confidence 44455557666 4 4445677899999 99999999999997
No 109
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=22.86 E-value=34 Score=24.99 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhhHHhh
Q 026809 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (233)
Q Consensus 98 ~t~~Ql~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k~Kr~ 154 (233)
+++.+..+|.-.|... +. ..+||..| |++...|+.+...-|.+.++.
T Consensus 26 L~~~~r~vl~l~~~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED--YS----LSEIADTF----NVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp SCHHHHHHHHHHHTSC--CC----HHHHHHHT----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 4677888888876555 22 34899999 999999999887666665543
No 110
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=21.35 E-value=32 Score=26.14 Aligned_cols=41 Identities=17% Similarity=0.434 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccchhh
Q 026809 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (233)
Q Consensus 104 ~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR~k 150 (233)
......|... .| .......||+.. |++..-|+.+|.|+-.=
T Consensus 19 ~aA~~lf~e~-G~-~~~t~~~IA~~a----gvsk~tlY~~F~sKe~L 59 (192)
T 2fq4_A 19 SASYELLLES-GF-KAVTVDKIAERA----KVSKATIYKWWPNKAAV 59 (192)
T ss_dssp HHHHHHHHHH-CT-TTCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHc-Cc-ccccHHHHHHHc----CCCHHHHHHHCCCHHHH
Confidence 3444457776 54 334567899999 99999999999997443
No 111
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=21.16 E-value=40 Score=25.70 Aligned_cols=39 Identities=15% Similarity=0.444 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccceeeccccc
Q 026809 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNR 147 (233)
Q Consensus 103 l~~Le~~F~~~~~~P~~~~r~~LA~~L~~~~gls~~qV~vWFQNR 147 (233)
+......|... .|- .....+||+.. |++..-++..|.|+
T Consensus 20 l~aA~~lf~~~-G~~-~~s~~~Ia~~a----gvs~~t~Y~yF~sK 58 (203)
T 3ccy_A 20 IERAAAMFARQ-GYS-ETSIGDIARAC----ECSKSRLYHYFDSK 58 (203)
T ss_dssp HHHHHHHHHHT-CTT-TSCHHHHHHHT----TCCGGGGTTTCSCH
T ss_pred HHHHHHHHHHc-Ccc-cCCHHHHHHHh----CCCcCeeeeeeCCH
Confidence 44455568777 543 34567899999 99999999999997
No 112
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=20.33 E-value=44 Score=24.99 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHhhCCCcccceeeccccch
Q 026809 118 RKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (233)
Q Consensus 118 ~~~~r~~LA~~L~~~~gls~~qV~vWFQNRR 148 (233)
.......||+.. |++..-|+..|.||-
T Consensus 31 ~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~ 57 (190)
T 2v57_A 31 PTAALGDIAAAA----GVGRSTVHRYYPERT 57 (190)
T ss_dssp TTCCHHHHHHHH----TCCHHHHHHHCSSHH
T ss_pred CCCCHHHHHHHh----CCCHHHHHHHcCCHH
Confidence 455567899999 999999999999973
Done!