Query 026810
Match_columns 232
No_of_seqs 110 out of 1778
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 13:02:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15456 universal stress prot 99.9 2E-24 4.3E-29 163.8 16.1 140 40-199 1-142 (142)
2 cd01989 STK_N The N-terminal d 99.9 8.5E-24 1.8E-28 160.9 17.0 143 43-201 1-146 (146)
3 PRK11175 universal stress prot 99.9 5.2E-24 1.1E-28 180.9 17.1 173 39-227 1-173 (305)
4 PRK11175 universal stress prot 99.9 3.8E-24 8.3E-29 181.7 15.9 166 2-200 126-300 (305)
5 PRK15005 universal stress prot 99.9 8.9E-24 1.9E-28 160.3 15.9 142 40-199 1-144 (144)
6 PRK09982 universal stress prot 99.9 1.2E-23 2.6E-28 159.7 13.6 140 39-201 1-140 (142)
7 PRK15118 universal stress glob 99.9 1.2E-22 2.6E-27 154.3 14.3 139 39-201 1-140 (144)
8 PRK10116 universal stress prot 99.9 5.5E-22 1.2E-26 150.2 15.3 139 39-201 1-140 (142)
9 PF00582 Usp: Universal stress 99.9 5.1E-22 1.1E-26 148.0 14.7 140 40-199 1-140 (140)
10 cd01988 Na_H_Antiporter_C The 99.9 9.9E-21 2.1E-25 141.0 16.1 132 43-199 1-132 (132)
11 cd01987 USP_OKCHK USP domain i 99.8 4.3E-20 9.4E-25 136.6 12.7 123 43-199 1-124 (124)
12 COG0589 UspA Universal stress 99.8 2E-17 4.3E-22 125.8 17.3 149 39-201 3-153 (154)
13 cd00293 USP_Like Usp: Universa 99.8 1.4E-17 3E-22 122.6 15.4 130 43-198 1-130 (130)
14 PRK12652 putative monovalent c 99.5 1.8E-13 4E-18 117.9 13.9 141 38-200 2-151 (357)
15 PRK10490 sensor protein KdpD; 99.2 2.2E-10 4.9E-15 110.3 15.7 127 40-202 249-376 (895)
16 COG2205 KdpD Osmosensitive K+ 99.1 1.4E-09 2.9E-14 100.4 12.9 131 40-204 247-378 (890)
17 cd01984 AANH_like Adenine nucl 98.4 1.8E-06 3.9E-11 59.3 7.8 84 44-197 1-85 (86)
18 PLN03159 cation/H(+) antiporte 97.8 0.0012 2.6E-08 63.6 17.1 70 7-80 600-669 (832)
19 PLN03159 cation/H(+) antiporte 97.4 0.0038 8.2E-08 60.3 14.3 149 40-200 457-615 (832)
20 TIGR02432 lysidine_TilS_N tRNA 95.9 0.14 3.1E-06 40.1 10.8 37 43-79 1-37 (189)
21 PRK12342 hypothetical protein; 95.7 0.13 2.7E-06 42.8 9.8 109 47-197 30-141 (254)
22 PRK03359 putative electron tra 95.6 0.12 2.6E-06 42.9 9.2 109 47-196 31-143 (256)
23 PF01171 ATP_bind_3: PP-loop f 95.2 0.82 1.8E-05 35.7 12.5 93 43-168 1-106 (182)
24 cd01992 PP-ATPase N-terminal d 94.2 1.1 2.3E-05 34.9 10.9 37 43-79 1-37 (185)
25 PRK07313 phosphopantothenoylcy 94.1 0.37 8.1E-06 37.9 8.1 117 41-200 1-121 (182)
26 PRK05579 bifunctional phosphop 93.7 0.63 1.4E-05 41.3 9.6 118 39-200 4-124 (399)
27 TIGR02113 coaC_strep phosphopa 93.4 0.54 1.2E-05 36.8 7.8 43 158-200 76-120 (177)
28 PRK13982 bifunctional SbtC-lik 92.9 1.1 2.3E-05 40.7 9.8 123 39-204 68-192 (475)
29 COG2086 FixA Electron transfer 92.6 2.6 5.7E-05 35.1 11.1 110 47-199 32-145 (260)
30 PRK06029 3-octaprenyl-4-hydrox 92.5 1.1 2.4E-05 35.3 8.4 123 41-203 1-126 (185)
31 PRK08305 spoVFB dipicolinate s 92.4 1.2 2.6E-05 35.5 8.6 124 38-202 2-131 (196)
32 PF01012 ETF: Electron transfe 91.9 3.4 7.4E-05 31.5 10.5 87 44-168 2-100 (164)
33 PF02441 Flavoprotein: Flavopr 91.8 0.24 5.2E-06 36.5 3.8 113 42-200 1-118 (129)
34 cd01993 Alpha_ANH_like_II This 90.7 6.3 0.00014 30.3 11.1 38 43-80 1-40 (185)
35 TIGR00521 coaBC_dfp phosphopan 90.2 3.1 6.8E-05 36.8 9.7 119 40-200 2-120 (390)
36 KOG1650 Predicted K+/H+-antipo 90.1 4.8 0.0001 38.9 11.6 71 8-82 585-655 (769)
37 TIGR02852 spore_dpaB dipicolin 90.0 4.4 9.5E-05 32.0 9.5 47 157-203 78-127 (187)
38 COG0041 PurE Phosphoribosylcar 88.7 4.1 9E-05 31.0 7.9 64 130-204 26-92 (162)
39 cd01985 ETF The electron trans 88.2 10 0.00023 29.3 11.1 23 147-169 80-102 (181)
40 TIGR01162 purE phosphoribosyla 88.1 4.9 0.00011 30.7 8.2 63 130-203 22-87 (156)
41 PRK05920 aromatic acid decarbo 87.1 2.3 5E-05 34.1 6.2 37 40-77 2-38 (204)
42 COG0037 MesJ tRNA(Ile)-lysidin 86.6 12 0.00026 31.4 10.8 38 41-80 21-58 (298)
43 PLN02496 probable phosphopanto 86.6 2.9 6.4E-05 33.6 6.6 47 152-200 92-140 (209)
44 PRK10696 tRNA 2-thiocytidine b 86.0 18 0.0004 29.9 12.0 39 41-79 29-69 (258)
45 PF00731 AIRC: AIR carboxylase 85.7 3.4 7.4E-05 31.4 6.2 62 131-203 25-89 (150)
46 TIGR00591 phr2 photolyase PhrI 85.5 13 0.00028 33.6 11.0 98 42-167 23-122 (454)
47 TIGR00268 conserved hypothetic 81.1 25 0.00054 29.0 10.2 36 40-79 11-46 (252)
48 TIGR00421 ubiX_pad polyprenyl 80.6 25 0.00055 27.5 10.0 47 158-204 75-124 (181)
49 PF00875 DNA_photolyase: DNA p 79.9 8 0.00017 29.5 6.5 114 54-201 13-126 (165)
50 PF03746 LamB_YcsF: LamB/YcsF 79.4 34 0.00074 28.2 10.2 125 41-197 27-161 (242)
51 PRK05253 sulfate adenylyltrans 78.6 41 0.00089 28.7 10.9 40 41-80 27-66 (301)
52 PRK13820 argininosuccinate syn 78.0 47 0.001 29.5 11.3 36 41-79 2-38 (394)
53 TIGR02699 archaeo_AfpA archaeo 77.4 16 0.00036 28.4 7.5 42 159-200 79-123 (174)
54 cd01714 ETF_beta The electron 77.1 25 0.00054 28.0 8.7 37 42-78 25-61 (202)
55 TIGR03556 photolyase_8HDF deox 76.9 15 0.00032 33.4 8.2 87 52-167 13-99 (471)
56 PRK11914 diacylglycerol kinase 76.8 6.9 0.00015 33.2 5.8 67 133-209 39-105 (306)
57 COG1066 Sms Predicted ATP-depe 72.8 62 0.0013 29.1 10.5 114 42-200 94-218 (456)
58 PRK05406 LamB/YcsF family prot 72.4 40 0.00086 27.9 8.8 122 44-197 32-163 (246)
59 PF00448 SRP54: SRP54-type pro 72.2 42 0.00091 26.6 8.8 113 44-199 5-121 (196)
60 PF02844 GARS_N: Phosphoribosy 71.6 3.9 8.5E-05 28.8 2.5 25 142-167 47-71 (100)
61 COG1597 LCB5 Sphingosine kinas 71.5 15 0.00033 31.2 6.6 72 128-208 28-99 (301)
62 COG0452 Dfp Phosphopantothenoy 71.5 13 0.00029 32.9 6.3 120 40-202 3-123 (392)
63 PF02601 Exonuc_VII_L: Exonucl 71.1 14 0.0003 31.6 6.3 62 136-199 46-114 (319)
64 TIGR00342 thiazole biosynthesi 69.6 78 0.0017 27.8 11.9 36 40-79 171-206 (371)
65 PRK13337 putative lipid kinase 68.8 14 0.0003 31.3 5.8 68 132-208 31-99 (304)
66 PRK10660 tilS tRNA(Ile)-lysidi 68.8 44 0.00096 30.1 9.2 40 41-80 15-55 (436)
67 TIGR02765 crypto_DASH cryptoch 65.4 38 0.00083 30.2 8.1 47 118-167 59-105 (429)
68 COG0552 FtsY Signal recognitio 64.9 95 0.002 27.0 10.4 96 41-175 140-238 (340)
69 PF02887 PK_C: Pyruvate kinase 64.8 15 0.00032 26.3 4.5 43 146-200 4-47 (117)
70 PRK00109 Holliday junction res 64.4 12 0.00026 28.0 4.0 55 146-203 42-100 (138)
71 cd01994 Alpha_ANH_like_IV This 64.3 70 0.0015 25.3 9.0 33 43-79 1-33 (194)
72 PRK12569 hypothetical protein; 62.4 83 0.0018 26.0 8.7 122 44-197 35-166 (245)
73 PRK13054 lipid kinase; Reviewe 62.3 30 0.00065 29.2 6.6 69 132-210 30-102 (300)
74 PLN00200 argininosuccinate syn 62.2 1.2E+02 0.0026 27.2 12.8 37 40-79 4-40 (404)
75 PLN02948 phosphoribosylaminoim 62.0 50 0.0011 30.9 8.4 62 130-202 434-498 (577)
76 TIGR00250 RNAse_H_YqgF RNAse H 61.9 26 0.00056 25.8 5.4 55 145-203 35-94 (130)
77 TIGR02039 CysD sulfate adenyly 60.9 1E+02 0.0023 26.2 9.7 40 41-80 19-58 (294)
78 PF00781 DAGK_cat: Diacylglyce 60.5 9.6 0.00021 27.8 2.9 64 133-205 28-95 (130)
79 cd01712 ThiI ThiI is required 60.3 75 0.0016 24.3 11.3 34 43-80 1-34 (177)
80 PRK00509 argininosuccinate syn 60.2 1E+02 0.0022 27.5 9.6 36 41-79 2-37 (399)
81 PRK13055 putative lipid kinase 59.4 30 0.00066 29.8 6.2 69 130-208 30-101 (334)
82 cd00408 DHDPS-like Dihydrodipi 59.3 56 0.0012 27.2 7.6 53 147-202 81-133 (281)
83 PRK00286 xseA exodeoxyribonucl 59.3 32 0.00069 30.9 6.5 65 138-204 169-236 (438)
84 PRK10867 signal recognition pa 59.0 1.3E+02 0.0029 27.1 10.3 36 43-78 103-138 (433)
85 PRK13057 putative lipid kinase 58.4 14 0.0003 31.0 3.8 70 130-210 23-92 (287)
86 PRK12563 sulfate adenylyltrans 58.2 1.2E+02 0.0026 26.1 9.4 40 41-80 37-76 (312)
87 cd01990 Alpha_ANH_like_I This 57.8 90 0.0019 24.4 9.9 33 44-79 1-33 (202)
88 PRK00861 putative lipid kinase 57.1 24 0.00051 29.8 5.1 65 134-208 33-97 (300)
89 COG0615 TagD Cytidylyltransfer 56.6 31 0.00068 25.9 5.0 36 133-169 62-97 (140)
90 cd00951 KDGDH 5-dehydro-4-deox 56.2 54 0.0012 27.6 7.1 65 133-200 69-133 (289)
91 TIGR02766 crypt_chrom_pln cryp 54.9 76 0.0017 28.8 8.3 49 117-167 48-96 (475)
92 cd01713 PAPS_reductase This do 54.4 86 0.0019 23.2 10.5 36 43-79 1-36 (173)
93 COG0299 PurN Folate-dependent 54.4 1.1E+02 0.0024 24.4 9.6 144 42-229 1-169 (200)
94 PRK12361 hypothetical protein; 53.7 22 0.00048 32.9 4.7 67 134-210 273-339 (547)
95 PRK10481 hypothetical protein; 53.5 60 0.0013 26.5 6.6 42 147-198 168-212 (224)
96 PRK10674 deoxyribodipyrimidine 52.9 1.1E+02 0.0023 27.9 8.8 92 49-166 11-104 (472)
97 TIGR03702 lip_kinase_YegS lipi 52.5 54 0.0012 27.6 6.5 69 132-210 26-98 (293)
98 COG1058 CinA Predicted nucleot 52.1 53 0.0012 27.3 6.1 62 129-198 30-93 (255)
99 PF07355 GRDB: Glycine/sarcosi 51.8 39 0.00084 29.4 5.4 67 133-202 47-121 (349)
100 PF03652 UPF0081: Uncharacteri 51.5 31 0.00068 25.6 4.3 69 135-203 27-98 (135)
101 cd01995 ExsB ExsB is a transcr 51.1 1.1E+02 0.0023 23.2 11.0 33 43-79 1-33 (169)
102 PRK13010 purU formyltetrahydro 50.9 1.5E+02 0.0033 25.1 8.9 85 40-168 92-179 (289)
103 TIGR00884 guaA_Cterm GMP synth 50.7 1.6E+02 0.0035 25.2 10.7 36 42-80 17-52 (311)
104 TIGR00237 xseA exodeoxyribonuc 50.4 57 0.0012 29.3 6.6 67 136-204 161-231 (432)
105 TIGR00655 PurU formyltetrahydr 50.0 1.6E+02 0.0034 24.9 9.0 85 40-168 83-170 (280)
106 PF13167 GTP-bdg_N: GTP-bindin 49.6 87 0.0019 21.8 7.0 22 146-167 45-66 (95)
107 PRK00766 hypothetical protein; 49.2 47 0.001 26.4 5.2 59 133-198 42-104 (194)
108 TIGR00524 eIF-2B_rel eIF-2B al 49.1 1.3E+02 0.0029 25.6 8.3 47 154-200 193-239 (303)
109 cd01986 Alpha_ANH_like Adenine 48.7 87 0.0019 21.5 8.8 33 44-80 1-33 (103)
110 cd03364 TOPRIM_DnaG_primases T 48.4 59 0.0013 21.3 4.9 35 41-75 43-77 (79)
111 COG0301 ThiI Thiamine biosynth 48.1 1.5E+02 0.0033 26.2 8.6 36 41-80 175-210 (383)
112 PRK09590 celB cellobiose phosp 48.0 40 0.00087 23.8 4.2 59 132-203 28-86 (104)
113 COG1010 CobJ Precorrin-3B meth 47.6 39 0.00085 27.8 4.5 58 158-218 154-213 (249)
114 cd00950 DHDPS Dihydrodipicolin 47.4 97 0.0021 25.8 7.2 53 147-202 84-136 (284)
115 TIGR00683 nanA N-acetylneurami 47.3 1.1E+02 0.0025 25.7 7.7 53 147-202 85-138 (290)
116 PRK08349 hypothetical protein; 47.0 1.4E+02 0.003 23.4 8.6 34 42-79 1-34 (198)
117 TIGR03249 KdgD 5-dehydro-4-deo 46.7 92 0.002 26.3 7.0 51 147-200 88-138 (296)
118 COG2870 RfaE ADP-heptose synth 46.3 87 0.0019 28.0 6.7 52 147-204 130-183 (467)
119 PRK03170 dihydrodipicolinate s 46.0 1E+02 0.0022 25.9 7.2 53 147-202 85-137 (292)
120 PRK13059 putative lipid kinase 44.8 75 0.0016 26.7 6.2 66 133-209 32-99 (295)
121 PF13662 Toprim_4: Toprim doma 44.4 40 0.00086 22.2 3.6 34 41-74 46-79 (81)
122 PRK06027 purU formyltetrahydro 44.2 2E+02 0.0042 24.3 9.2 140 40-229 88-255 (286)
123 TIGR01769 GGGP geranylgeranylg 43.7 51 0.0011 26.4 4.7 52 147-203 13-64 (205)
124 PF10087 DUF2325: Uncharacteri 43.1 92 0.002 21.3 5.5 62 132-202 22-85 (97)
125 KOG1467 Translation initiation 42.8 2.7E+02 0.0059 25.6 10.2 61 132-203 409-472 (556)
126 cd00952 CHBPH_aldolase Trans-o 42.7 1.6E+02 0.0036 25.0 8.0 67 133-202 77-145 (309)
127 TIGR02313 HpaI-NOT-DapA 2,4-di 42.6 1.2E+02 0.0027 25.5 7.2 53 147-202 84-137 (294)
128 COG0151 PurD Phosphoribosylami 42.6 56 0.0012 29.3 5.1 21 147-167 52-72 (428)
129 cd02067 B12-binding B12 bindin 41.4 1.1E+02 0.0025 21.5 6.0 38 131-170 25-62 (119)
130 cd01997 GMP_synthase_C The C-t 41.2 84 0.0018 26.7 5.9 35 43-80 1-35 (295)
131 COG0371 GldA Glycerol dehydrog 40.7 2E+02 0.0043 25.3 8.1 62 147-218 73-135 (360)
132 TIGR00959 ffh signal recogniti 40.6 2.8E+02 0.006 25.0 10.4 37 42-78 101-137 (428)
133 cd08550 GlyDH-like Glycerol_de 40.6 1.6E+02 0.0034 25.5 7.7 59 133-202 49-111 (349)
134 COG3243 PhaC Poly(3-hydroxyalk 40.4 2.8E+02 0.0061 25.1 9.4 116 8-167 100-216 (445)
135 PRK08535 translation initiatio 39.5 2.4E+02 0.0053 24.1 9.3 58 132-200 170-230 (310)
136 cd01715 ETF_alpha The electron 39.3 1.7E+02 0.0037 22.2 9.9 25 146-170 71-95 (168)
137 COG1504 Uncharacterized conser 39.3 55 0.0012 23.5 3.7 43 154-202 57-99 (121)
138 PRK03620 5-dehydro-4-deoxygluc 38.7 1.5E+02 0.0031 25.2 7.0 52 147-201 90-141 (303)
139 PRK14665 mnmA tRNA-specific 2- 38.3 2.8E+02 0.006 24.4 12.8 35 40-78 4-38 (360)
140 COG2876 AroA 3-deoxy-D-arabino 38.3 1.1E+02 0.0024 25.6 5.9 95 43-170 46-140 (286)
141 TIGR00147 lipid kinase, YegS/R 38.2 2.2E+02 0.0047 23.7 8.0 68 131-208 30-99 (293)
142 PF02878 PGM_PMM_I: Phosphoglu 38.1 47 0.001 24.4 3.5 41 40-80 39-79 (137)
143 PRK08227 autoinducer 2 aldolas 38.0 2.4E+02 0.0052 23.6 9.2 64 125-201 132-201 (264)
144 PF07302 AroM: AroM protein; 38.0 1.9E+02 0.0041 23.6 7.1 43 147-199 164-209 (221)
145 TIGR02690 resist_ArsH arsenica 37.5 2.2E+02 0.0048 23.0 7.7 27 52-78 40-66 (219)
146 PHA02031 putative DnaG-like pr 37.3 1.3E+02 0.0028 25.3 6.2 38 41-78 206-243 (266)
147 COG1646 Predicted phosphate-bi 36.9 66 0.0014 26.4 4.3 53 146-203 29-81 (240)
148 PF14582 Metallophos_3: Metall 36.7 51 0.0011 27.1 3.7 20 186-205 83-102 (255)
149 COG0420 SbcD DNA repair exonuc 36.6 58 0.0013 28.6 4.4 17 149-165 31-47 (390)
150 PRK08185 hypothetical protein; 36.6 84 0.0018 26.6 5.1 83 133-218 12-102 (283)
151 COG1927 Mtd Coenzyme F420-depe 36.3 1.2E+02 0.0026 24.6 5.6 48 147-201 49-96 (277)
152 cd05565 PTS_IIB_lactose PTS_II 36.3 80 0.0017 22.1 4.2 55 131-200 26-80 (99)
153 TIGR01826 CofD_related conserv 36.2 81 0.0017 27.1 5.0 53 146-204 162-216 (310)
154 PRK12858 tagatose 1,6-diphosph 35.9 3E+02 0.0064 24.0 9.8 118 55-202 105-251 (340)
155 PRK09423 gldA glycerol dehydro 35.9 2.4E+02 0.0053 24.5 8.2 58 133-201 56-117 (366)
156 COG0329 DapA Dihydrodipicolina 35.7 2.7E+02 0.0059 23.6 11.1 54 147-203 88-141 (299)
157 cd08170 GlyDH Glycerol dehydro 35.1 2.8E+02 0.006 23.9 8.4 61 132-202 48-111 (351)
158 PRK05772 translation initiatio 34.7 2.8E+02 0.006 24.5 8.1 65 132-203 226-291 (363)
159 PRK00994 F420-dependent methyl 34.6 2.3E+02 0.0049 23.5 7.0 49 147-202 49-97 (277)
160 PRK00919 GMP synthase subunit 34.5 3E+02 0.0064 23.6 10.9 36 42-80 22-57 (307)
161 PRK06372 translation initiatio 34.4 1.2E+02 0.0026 25.3 5.6 39 158-200 151-193 (253)
162 COG2379 GckA Putative glycerat 34.2 3.4E+02 0.0074 24.2 10.0 76 135-217 247-326 (422)
163 COG0426 FpaA Uncharacterized f 34.2 3.1E+02 0.0066 24.4 8.3 77 122-204 264-342 (388)
164 TIGR00511 ribulose_e2b2 ribose 33.9 3E+02 0.0064 23.4 9.2 59 131-200 164-225 (301)
165 PRK05370 argininosuccinate syn 33.9 3.7E+02 0.0079 24.5 11.8 36 40-79 10-45 (447)
166 cd01029 TOPRIM_primases TOPRIM 33.9 1.2E+02 0.0026 19.5 4.7 34 41-74 43-76 (79)
167 cd07044 CofD_YvcK Family of Co 33.5 82 0.0018 27.0 4.6 50 146-201 164-215 (309)
168 COG1570 XseA Exonuclease VII, 33.2 1.3E+02 0.0029 27.1 6.0 75 140-216 171-250 (440)
169 COG0794 GutQ Predicted sugar p 33.0 1.1E+02 0.0023 24.6 4.9 77 147-231 28-111 (202)
170 PRK08334 translation initiatio 33.0 3.4E+02 0.0074 23.8 9.4 63 131-200 217-280 (356)
171 PRK08335 translation initiatio 32.5 3.1E+02 0.0066 23.1 9.7 63 132-203 159-222 (275)
172 PRK00074 guaA GMP synthase; Re 32.5 4E+02 0.0088 24.5 10.8 36 41-79 215-250 (511)
173 KOG1116 Sphingosine kinase, in 32.5 1.8E+02 0.0039 27.2 6.8 74 129-206 207-281 (579)
174 TIGR03156 GTP_HflX GTP-binding 32.4 3.4E+02 0.0073 23.6 8.6 19 147-165 55-73 (351)
175 PF04459 DUF512: Protein of un 32.2 2.6E+02 0.0057 22.3 7.5 67 133-201 124-202 (204)
176 cd07187 YvcK_like family of mo 31.9 1.9E+02 0.0042 24.7 6.7 54 146-205 165-220 (308)
177 cd03557 L-arabinose_isomerase 31.8 2.1E+02 0.0046 26.2 7.3 46 147-201 51-100 (484)
178 TIGR00737 nifR3_yhdG putative 31.3 3.3E+02 0.0071 23.2 8.3 65 133-200 131-200 (319)
179 PRK03670 competence damage-ind 31.2 2E+02 0.0044 23.8 6.5 59 130-196 30-91 (252)
180 TIGR01918 various_sel_PB selen 31.1 1.3E+02 0.0028 27.0 5.5 84 133-219 43-137 (431)
181 TIGR01917 gly_red_sel_B glycin 31.0 1.3E+02 0.0029 26.9 5.6 84 133-219 43-137 (431)
182 TIGR00512 salvage_mtnA S-methy 30.9 59 0.0013 28.2 3.4 60 131-200 204-267 (331)
183 cd02071 MM_CoA_mut_B12_BD meth 30.9 1.1E+02 0.0024 21.9 4.5 34 136-169 28-61 (122)
184 COG0434 SgcQ Predicted TIM-bar 30.4 1.7E+02 0.0036 24.3 5.6 50 145-200 164-213 (263)
185 cd02072 Glm_B12_BD B12 binding 30.4 1.6E+02 0.0035 21.7 5.2 28 144-171 36-63 (128)
186 cd03770 SR_TndX_transposase Se 30.2 1.1E+02 0.0023 22.6 4.4 82 145-231 55-139 (140)
187 cd05564 PTS_IIB_chitobiose_lic 30.0 1.1E+02 0.0024 21.0 4.1 60 130-204 24-83 (96)
188 cd02070 corrinoid_protein_B12- 29.8 1.7E+02 0.0038 23.0 5.8 63 132-201 109-174 (201)
189 TIGR00646 MG010 DNA primase-re 29.5 1.2E+02 0.0027 24.5 4.8 37 41-77 154-190 (218)
190 PRK05720 mtnA methylthioribose 29.3 89 0.0019 27.3 4.2 63 130-202 203-269 (344)
191 PRK02929 L-arabinose isomerase 29.0 2.2E+02 0.0047 26.3 6.8 45 147-200 57-105 (499)
192 TIGR00177 molyb_syn molybdenum 28.6 1.5E+02 0.0033 21.9 5.0 33 132-165 39-73 (144)
193 PF00072 Response_reg: Respons 28.6 1.9E+02 0.004 19.4 7.0 49 147-202 32-81 (112)
194 COG4126 Hydantoin racemase [Am 28.5 72 0.0016 26.0 3.2 27 146-172 162-188 (230)
195 PLN02958 diacylglycerol kinase 28.2 4.7E+02 0.01 23.9 11.5 76 132-210 142-217 (481)
196 COG2099 CobK Precorrin-6x redu 28.2 1.4E+02 0.0031 24.8 5.0 61 147-214 55-115 (257)
197 TIGR00032 argG argininosuccina 28.1 4.3E+02 0.0094 23.5 11.0 33 43-79 1-33 (394)
198 PF13362 Toprim_3: Toprim doma 28.1 1.6E+02 0.0035 19.9 4.7 38 40-77 40-79 (96)
199 PF05728 UPF0227: Uncharacteri 27.9 2.6E+02 0.0057 21.9 6.4 45 148-203 47-92 (187)
200 TIGR00674 dapA dihydrodipicoli 27.9 3.6E+02 0.0078 22.5 10.3 53 147-202 82-134 (285)
201 PRK06371 translation initiatio 27.8 1E+02 0.0022 26.8 4.2 64 130-200 193-257 (329)
202 PRK08462 biotin carboxylase; V 27.7 4.4E+02 0.0096 23.5 10.4 34 40-78 3-36 (445)
203 COG2179 Predicted hydrolase of 27.6 3E+02 0.0065 21.5 7.4 36 41-77 35-70 (175)
204 PRK10550 tRNA-dihydrouridine s 27.5 3.9E+02 0.0085 22.8 9.0 62 133-200 133-202 (312)
205 TIGR00347 bioD dethiobiotin sy 27.4 1.6E+02 0.0034 22.0 5.0 40 157-200 98-137 (166)
206 PF01884 PcrB: PcrB family; I 27.1 84 0.0018 25.7 3.5 51 147-204 21-71 (230)
207 PRK02261 methylaspartate mutas 27.0 1.8E+02 0.0038 21.6 5.0 34 137-170 33-66 (137)
208 PF00701 DHDPS: Dihydrodipicol 26.3 2.9E+02 0.0063 23.0 6.9 52 147-201 85-136 (289)
209 cd06317 PBP1_ABC_sugar_binding 26.3 2.6E+02 0.0057 22.3 6.5 60 133-201 30-90 (275)
210 PRK11058 GTPase HflX; Provisio 26.3 4.8E+02 0.01 23.4 8.5 37 42-78 10-47 (426)
211 PRK06801 hypothetical protein; 26.2 1.8E+02 0.0039 24.6 5.5 85 133-219 17-109 (286)
212 cd00885 cinA Competence-damage 26.1 3.1E+02 0.0066 21.1 6.8 38 131-170 30-69 (170)
213 smart00732 YqgFc Likely ribonu 26.1 1.7E+02 0.0036 19.6 4.5 53 146-201 39-93 (99)
214 PF14639 YqgF: Holliday-juncti 25.9 68 0.0015 24.3 2.6 22 147-168 52-73 (150)
215 COG0816 Predicted endonuclease 25.9 1.8E+02 0.004 21.8 4.9 57 146-202 41-98 (141)
216 PF01008 IF-2B: Initiation fac 25.8 43 0.00093 27.9 1.7 57 133-200 158-218 (282)
217 cd01999 Argininosuccinate_Synt 25.8 4.7E+02 0.01 23.2 9.4 34 44-80 1-34 (385)
218 COG0415 PhrB Deoxyribodipyrimi 25.7 5.2E+02 0.011 23.6 9.8 71 122-200 57-127 (461)
219 PF03358 FMN_red: NADPH-depend 25.5 2.7E+02 0.0059 20.3 6.1 22 147-170 61-82 (152)
220 PRK12857 fructose-1,6-bisphosp 25.4 1.7E+02 0.0038 24.7 5.2 83 133-217 17-107 (284)
221 COG0562 Glf UDP-galactopyranos 25.3 88 0.0019 27.2 3.4 32 159-201 2-33 (374)
222 cd08199 EEVS 2-epi-5-epi-valio 25.2 4.3E+02 0.0094 23.0 7.8 59 133-202 53-124 (354)
223 PRK10415 tRNA-dihydrouridine s 25.2 4.4E+02 0.0095 22.6 8.8 65 133-200 133-202 (321)
224 PRK03673 hypothetical protein; 25.0 3.2E+02 0.007 24.3 7.0 61 130-198 31-93 (396)
225 PF03808 Glyco_tran_WecB: Glyc 24.9 2.6E+02 0.0057 21.4 5.9 44 146-198 89-132 (172)
226 PLN02828 formyltetrahydrofolat 24.8 4.2E+02 0.0091 22.2 9.7 38 40-78 69-106 (268)
227 TIGR01858 tag_bisphos_ald clas 24.6 1.9E+02 0.0041 24.5 5.3 83 133-217 15-105 (282)
228 PRK11070 ssDNA exonuclease Rec 24.3 6E+02 0.013 23.9 10.7 94 40-168 68-161 (575)
229 COG1036 Archaeal flavoproteins 24.3 75 0.0016 24.6 2.5 44 155-202 85-135 (187)
230 TIGR02855 spore_yabG sporulati 24.3 2.6E+02 0.0055 23.7 5.8 37 132-168 127-163 (283)
231 PRK12737 gatY tagatose-bisphos 24.2 1.8E+02 0.004 24.5 5.2 83 133-217 17-107 (284)
232 PRK04527 argininosuccinate syn 24.2 5.2E+02 0.011 23.1 10.4 35 41-79 2-36 (400)
233 PRK08417 dihydroorotase; Provi 23.9 1.5E+02 0.0033 25.9 4.9 25 55-79 181-205 (386)
234 cd08189 Fe-ADH5 Iron-containin 23.9 2.3E+02 0.0049 24.8 5.9 21 147-167 72-93 (374)
235 PF13607 Succ_CoA_lig: Succiny 23.9 1.8E+02 0.004 21.6 4.6 71 131-208 23-97 (138)
236 smart00852 MoCF_biosynth Proba 23.9 2.4E+02 0.0051 20.4 5.2 34 131-165 29-64 (135)
237 PF05582 Peptidase_U57: YabG p 23.8 2.4E+02 0.0052 23.9 5.6 37 132-168 128-164 (287)
238 PRK00211 sulfur relay protein 23.8 2.5E+02 0.0054 20.2 5.2 37 42-79 2-42 (119)
239 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.7 1.4E+02 0.003 21.1 3.9 40 40-80 45-84 (126)
240 cd06533 Glyco_transf_WecG_TagA 23.6 1.7E+02 0.0036 22.5 4.5 43 147-198 88-130 (171)
241 PLN02417 dihydrodipicolinate s 23.6 4.3E+02 0.0094 22.0 7.4 51 147-202 85-135 (280)
242 PRK08745 ribulose-phosphate 3- 23.5 2.1E+02 0.0047 23.2 5.3 33 133-167 169-201 (223)
243 cd00578 L-fuc_L-ara-isomerases 23.4 5.4E+02 0.012 23.1 8.4 47 147-202 52-98 (452)
244 TIGR03572 WbuZ glycosyl amidat 23.4 3.9E+02 0.0084 21.4 7.6 50 148-200 156-205 (232)
245 PF01933 UPF0052: Uncharacteri 23.3 1.2E+02 0.0026 25.9 3.9 52 146-202 173-225 (300)
246 smart00493 TOPRIM topoisomeras 22.9 1.5E+02 0.0032 18.8 3.5 26 42-67 48-73 (76)
247 PRK09722 allulose-6-phosphate 22.9 3.2E+02 0.0068 22.3 6.1 33 133-167 167-199 (229)
248 COG0541 Ffh Signal recognition 22.9 5.8E+02 0.013 23.2 10.6 95 42-175 102-199 (451)
249 PRK09197 fructose-bisphosphate 22.6 2.6E+02 0.0056 24.5 5.8 70 133-204 20-104 (350)
250 PF01177 Asp_Glu_race: Asp/Glu 22.5 1.3E+02 0.0028 23.5 3.9 41 148-196 161-205 (216)
251 PF13580 SIS_2: SIS domain; PD 22.3 1E+02 0.0022 22.6 3.0 36 40-76 102-137 (138)
252 cd04731 HisF The cyclase subun 22.3 2.1E+02 0.0045 23.1 5.1 51 147-200 151-201 (243)
253 PRK06806 fructose-bisphosphate 22.2 2.3E+02 0.005 23.9 5.3 85 133-219 17-109 (281)
254 TIGR02667 moaB_proteo molybden 22.2 3.6E+02 0.0078 20.5 6.2 33 132-165 34-70 (163)
255 PF06925 MGDG_synth: Monogalac 22.1 2.5E+02 0.0054 21.2 5.2 27 53-79 3-29 (169)
256 PRK13011 formyltetrahydrofolat 22.1 4.8E+02 0.01 22.0 9.4 36 41-77 89-124 (286)
257 PF02142 MGS: MGS-like domain 21.9 60 0.0013 22.2 1.5 44 149-196 51-94 (95)
258 COG0036 Rpe Pentose-5-phosphat 21.8 2.8E+02 0.0061 22.5 5.5 27 140-167 173-199 (220)
259 cd06375 PBP1_mGluR_groupII Lig 21.8 5.9E+02 0.013 22.9 10.6 23 147-169 245-267 (458)
260 PF07279 DUF1442: Protein of u 21.7 4.4E+02 0.0096 21.4 7.3 37 38-79 39-77 (218)
261 PF03575 Peptidase_S51: Peptid 21.7 68 0.0015 24.0 1.9 39 127-168 7-45 (154)
262 PRK08091 ribulose-phosphate 3- 21.4 2.5E+02 0.0055 22.9 5.3 33 133-167 177-209 (228)
263 TIGR02260 benz_CoA_red_B benzo 21.4 1.7E+02 0.0037 26.1 4.7 51 147-200 339-389 (413)
264 PRK06247 pyruvate kinase; Prov 21.4 2.1E+02 0.0046 26.2 5.3 43 146-200 357-400 (476)
265 cd01971 Nitrogenase_VnfN_like 21.3 1.7E+02 0.0037 26.1 4.7 28 143-171 102-129 (427)
266 TIGR00583 mre11 DNA repair pro 21.2 2.1E+02 0.0046 25.5 5.2 20 147-166 31-50 (405)
267 cd00947 TBP_aldolase_IIB Tagat 21.2 2.3E+02 0.0049 23.9 5.1 69 133-203 12-80 (276)
268 PRK06036 translation initiatio 21.0 2.8E+02 0.006 24.2 5.7 65 130-202 204-269 (339)
269 PLN02461 Probable pyruvate kin 21.0 2.2E+02 0.0047 26.4 5.3 43 145-199 382-425 (511)
270 TIGR01425 SRP54_euk signal rec 21.0 6.2E+02 0.014 22.8 9.8 33 44-77 104-136 (429)
271 PRK15411 rcsA colanic acid cap 20.9 4.2E+02 0.0091 20.8 7.4 48 143-200 33-85 (207)
272 TIGR01768 GGGP-family geranylg 20.8 2E+02 0.0044 23.4 4.5 51 147-203 16-66 (223)
273 TIGR00640 acid_CoA_mut_C methy 20.5 1.8E+02 0.0039 21.4 3.9 33 136-168 31-63 (132)
274 cd00886 MogA_MoaB MogA_MoaB fa 20.5 2.6E+02 0.0056 20.9 4.9 34 131-165 31-68 (152)
275 cd05710 SIS_1 A subgroup of th 20.5 2.1E+02 0.0046 20.3 4.3 40 40-80 46-85 (120)
276 PRK00090 bioD dithiobiotin syn 20.5 2.6E+02 0.0055 22.1 5.2 13 186-198 127-139 (222)
277 cd00946 FBP_aldolase_IIA Class 20.4 5.9E+02 0.013 22.3 7.7 72 133-204 15-99 (345)
278 TIGR00273 iron-sulfur cluster- 20.4 3.3E+02 0.0072 24.6 6.3 56 110-166 41-96 (432)
279 PRK15424 propionate catabolism 20.4 4.1E+02 0.0088 24.8 7.0 55 133-203 37-94 (538)
280 TIGR03127 RuMP_HxlB 6-phospho 20.3 1.7E+02 0.0036 22.4 3.9 40 40-80 71-110 (179)
281 cd01979 Pchlide_reductase_N Pc 20.2 6E+02 0.013 22.4 8.7 28 137-165 325-352 (396)
282 TIGR00930 2a30 K-Cl cotranspor 20.1 9.1E+02 0.02 24.4 12.8 127 42-202 576-711 (953)
283 cd05014 SIS_Kpsf KpsF-like pro 20.1 2.1E+02 0.0045 20.2 4.2 40 40-80 46-85 (128)
284 cd02812 PcrB_like PcrB_like pr 20.0 2.1E+02 0.0045 23.3 4.5 51 147-203 14-65 (219)
285 cd00532 MGS-like MGS-like doma 20.0 3.2E+02 0.007 19.1 5.8 62 133-197 42-104 (112)
No 1
>PRK15456 universal stress protein UspG; Provisional
Probab=99.93 E-value=2e-24 Score=163.84 Aligned_cols=140 Identities=24% Similarity=0.246 Sum_probs=102.4
Q ss_pred CCcEEEEEecCCh--hHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSD--ESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (232)
Q Consensus 40 ~~~~ILv~vD~s~--~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (232)
|+++||||+|+|+ .+..|+++|..+|+. .++++++||++...... ..... .+ .+...+.+.+..++.
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~-~~~l~llhv~~~~~~~~--~~~~~---~~-----~~~~~~~~~~~~~~~ 69 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQD-DGVIHLLHVLPGSASLS--LHRFA---AD-----VRRFEEHLQHEAEER 69 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhc-CCeEEEEEEecCccccc--ccccc---cc-----hhhHHHHHHHHHHHH
Confidence 4899999999994 899999999999987 46999999997542211 00000 00 111122223333333
Q ss_pred HHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEE
Q 026810 118 TATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (232)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVli 197 (232)
+++ +...+...+.+++.++..|++ .+.|+++++++++||||||++|++ +.++ ++||++++|+++++||||+
T Consensus 70 l~~----~~~~~~~~~~~v~~~v~~G~~-~~~I~~~a~~~~~DLIVmG~~g~~-~~~~---llGS~a~~v~~~a~~pVLv 140 (142)
T PRK15456 70 LQT----MVSHFTIDPSRIKQHVRFGSV-RDEVNELAEELGADVVVIGSRNPS-ISTH---LLGSNASSVIRHANLPVLV 140 (142)
T ss_pred HHH----HHHHhCCCCcceEEEEcCCCh-HHHHHHHHhhcCCCEEEEcCCCCC-ccce---ecCccHHHHHHcCCCCEEE
Confidence 332 333333346788999988864 999999999999999999999976 7788 8999999999999999999
Q ss_pred Ec
Q 026810 198 VR 199 (232)
Q Consensus 198 Vp 199 (232)
||
T Consensus 141 V~ 142 (142)
T PRK15456 141 VR 142 (142)
T ss_pred eC
Confidence 96
No 2
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.92 E-value=8.5e-24 Score=160.86 Aligned_cols=143 Identities=17% Similarity=0.263 Sum_probs=107.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHH
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (232)
+||||+|+|+.|..|++||+++|...+++|+++||.+........... . .......+...+..+ +.+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~----~~l 67 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGK-----L----EVASAYKQEEDKEAK----ELL 67 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccc-----h----HHHHHHHHHHHHHHH----HHH
Confidence 589999999999999999999999999999999998654321111000 0 001111122222222 233
Q ss_pred HHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccC-chhHHHhccCC--CcEEEEc
Q 026810 123 ADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLG-SVSDYCVHHCV--CPVVVVR 199 (232)
Q Consensus 123 ~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~g-s~~~~vl~~~~--~PVliVp 199 (232)
++....+...++.++..+..|+++++.|++++++.++||||||+++++.+.++ ++| |++.+|+++++ ||||+|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~---~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 68 LPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMK---FKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred HHHHHHHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeec---ccCCchhHHHHhcCCCCceEEEEe
Confidence 33333334458889999998867799999999999999999999999999998 887 69999999999 9999998
Q ss_pred CC
Q 026810 200 YP 201 (232)
Q Consensus 200 ~~ 201 (232)
.+
T Consensus 145 ~~ 146 (146)
T cd01989 145 KG 146 (146)
T ss_pred Cc
Confidence 63
No 3
>PRK11175 universal stress protein UspE; Provisional
Probab=99.92 E-value=5.2e-24 Score=180.94 Aligned_cols=173 Identities=18% Similarity=0.175 Sum_probs=127.6
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHH
Q 026810 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (232)
Q Consensus 39 ~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (232)
|++++|||++|+|+.+..|+++|+.+|+..+++++++|+++....... ..... ......++...+..
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~---- 67 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMT--TLLSP-------DEREAMRQGVISQR---- 67 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhh--cccch-------hHHHHHHHHHHHHH----
Confidence 579999999999999999999999999999999999999854321110 00000 00111111111222
Q ss_pred HHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 119 ATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
++.+++....+...+++++..+..++++.+.|+++++++++||||||+++++.+.+. ++||++++|+++++||||+|
T Consensus 68 ~~~l~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~---~~gs~~~~l~~~~~~pvlvv 144 (305)
T PRK11175 68 TAWIREQAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV---IFTPTDWHLLRKCPCPVLMV 144 (305)
T ss_pred HHHHHHHHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh---ccChhHHHHHhcCCCCEEEe
Confidence 222333333334457888887776455699999999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCCCCCceEEecCCCCCCCchHHhh
Q 026810 199 RYPDDKDDGEPLVKVKEPEKDDEDDHVDR 227 (232)
Q Consensus 199 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (232)
|........+++++++.+++...++-+++
T Consensus 145 ~~~~~~~~~~Ilva~D~s~~~~~~~~~~~ 173 (305)
T PRK11175 145 KDQDWPEGGKILVAVNVASEEPYHDALNE 173 (305)
T ss_pred cccccCCCCeEEEEeCCCCCccchhHHHH
Confidence 98655567889999998887766554443
No 4
>PRK11175 universal stress protein UspE; Provisional
Probab=99.92 E-value=3.8e-24 Score=181.74 Aligned_cols=166 Identities=18% Similarity=0.164 Sum_probs=119.2
Q ss_pred CCCCCCCCcCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecCChhH-------HHHHHHHHHHhCCC-CCEEE
Q 026810 2 NPQQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDES-------AFAVRWAVHHYLRP-GDAVI 73 (232)
Q Consensus 2 ~~~~~~~~~~~~~~pvl~v~~~~~~~~~~~~~~~~~~~~~~~ILv~vD~s~~s-------~~al~~A~~la~~~-~~~l~ 73 (232)
.++.+++++++++||||+|+..... .+++||+|+|+|+.+ ..++++|..+|+.. +++|+
T Consensus 126 ~gs~~~~l~~~~~~pvlvv~~~~~~-------------~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ 192 (305)
T PRK11175 126 FTPTDWHLLRKCPCPVLMVKDQDWP-------------EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVH 192 (305)
T ss_pred cChhHHHHHhcCCCCEEEecccccC-------------CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceE
Confidence 3578889999999999999964333 479999999998753 68999999999998 99999
Q ss_pred EEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCcce-EEEEeeCCchHHHHHH
Q 026810 74 LVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPY-KIHIVKDHDMRERLCL 152 (232)
Q Consensus 74 ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~g~~~~~~I~~ 152 (232)
++||++....... ...+ ... .....+.+.+.....+++ +.. ..+++. ...+..|+ +.+.|++
T Consensus 193 ll~v~~~~~~~~~--~~~~--~~~-----~~~~~~~~~~~~~~~l~~----~~~---~~~~~~~~~~v~~G~-~~~~I~~ 255 (305)
T PRK11175 193 LVNAYPVTPINIA--IELP--EFD-----PSVYNDAIRGQHLLAMKA----LRQ---KFGIDEEQTHVEEGL-PEEVIPD 255 (305)
T ss_pred EEEEecCcchhcc--cccc--ccc-----hhhHHHHHHHHHHHHHHH----HHH---HhCCChhheeeccCC-HHHHHHH
Confidence 9999865321100 0000 000 111111222221212222 211 124443 34555665 5999999
Q ss_pred HHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 153 EIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 153 ~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
++++.++||||||+++++++.++ ++||++++|+++++||||+||+
T Consensus 256 ~a~~~~~DLIVmG~~~~~~~~~~---llGS~a~~v~~~~~~pVLvv~~ 300 (305)
T PRK11175 256 LAEHLDAELVILGTVGRTGLSAA---FLGNTAEHVIDHLNCDLLAIKP 300 (305)
T ss_pred HHHHhCCCEEEECCCccCCCcce---eecchHHHHHhcCCCCEEEEcC
Confidence 99999999999999999999999 9999999999999999999985
No 5
>PRK15005 universal stress protein F; Provisional
Probab=99.92 E-value=8.9e-24 Score=160.30 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=102.4
Q ss_pred CCcEEEEEecCChh--HHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDE--SAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (232)
Q Consensus 40 ~~~~ILv~vD~s~~--s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (232)
|+++||+|+|+|+. +..|++||.++|+..+++|+++||++....... ...... ... . ....+.+..+..
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~-~~~~~~---~~~---~--~~~~~~~~~~~~ 71 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYAS-LGLAYS---AEL---P--AMDDLKAEAKSQ 71 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCccccc-cccccc---ccc---h--HHHHHHHHHHHH
Confidence 47999999999998 579999999999999999999999975332110 000000 000 0 011122222222
Q ss_pred HHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEE
Q 026810 118 TATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (232)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVli 197 (232)
+ +++...+...+.+++.++..|+ +.+.|+++++++++||||||++ ++.+.++ ++||++++|+++++||||+
T Consensus 72 l----~~~~~~~~~~~~~~~~~v~~G~-p~~~I~~~a~~~~~DLIV~Gs~-~~~~~~~---llGS~a~~vl~~a~cpVlv 142 (144)
T PRK15005 72 L----EEIIKKFKLPTDRVHVHVEEGS-PKDRILELAKKIPADMIIIASH-RPDITTY---LLGSNAAAVVRHAECSVLV 142 (144)
T ss_pred H----HHHHHHhCCCCCceEEEEeCCC-HHHHHHHHHHHcCCCEEEEeCC-CCCchhe---eecchHHHHHHhCCCCEEE
Confidence 2 2232333344677888888887 5999999999999999999998 4567888 9999999999999999999
Q ss_pred Ec
Q 026810 198 VR 199 (232)
Q Consensus 198 Vp 199 (232)
||
T Consensus 143 Vr 144 (144)
T PRK15005 143 VR 144 (144)
T ss_pred eC
Confidence 96
No 6
>PRK09982 universal stress protein UspD; Provisional
Probab=99.91 E-value=1.2e-23 Score=159.67 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=101.5
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHH
Q 026810 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (232)
Q Consensus 39 ~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (232)
|++++||||+|+|+.|..|+++|..+|+..+++|+++||++....... ..+. .. .+...+.+.+..+..+
T Consensus 1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~--~~~~----~~----~~~~~~~~~~~~~~~l 70 (142)
T PRK09982 1 MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYP--GIYF----PA----TEDILQLLKNKSDNKL 70 (142)
T ss_pred CCceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhch--hhhc----cc----hHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999865321110 0000 00 1112222333333333
Q ss_pred HHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 119 ATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
++ +...+. ...++.++..|+ |++.|+++|++.++||||||++ ++++.++ + | ++++|+++++||||+|
T Consensus 71 ~~----~~~~~~--~~~~~~~v~~G~-p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~---~-~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 71 YK----LTKNIQ--WPKTKLRIERGE-MPETLLEIMQKEQCDLLVCGHH-HSFINRL---M-P-AYRGMINKMSADLLIV 137 (142)
T ss_pred HH----HHHhcC--CCcceEEEEecC-HHHHHHHHHHHcCCCEEEEeCC-hhHHHHH---H-H-HHHHHHhcCCCCEEEe
Confidence 32 222222 235777888887 5999999999999999999986 7888887 5 5 9999999999999999
Q ss_pred cCC
Q 026810 199 RYP 201 (232)
Q Consensus 199 p~~ 201 (232)
|.-
T Consensus 138 ~~~ 140 (142)
T PRK09982 138 PFI 140 (142)
T ss_pred cCC
Confidence 953
No 7
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.90 E-value=1.2e-22 Score=154.28 Aligned_cols=139 Identities=22% Similarity=0.217 Sum_probs=94.5
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHH
Q 026810 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (232)
Q Consensus 39 ~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (232)
|++++||||+|+|+.+..|+++|..+|+..+++|+++||....... ..... .. . .....+...+..+..+
T Consensus 1 ~~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~---~~~~~----~~--~-~~~~~~~~~~~~~~~l 70 (144)
T PRK15118 1 MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDL---YTGLI----DV--N-LGDMQKRISEETHHAL 70 (144)
T ss_pred CCceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhh---hhhhh----hc--c-hHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999995321110 00000 00 0 0111112222222222
Q ss_pred HHHHHHhhhhhhhCCcceE-EEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEE
Q 026810 119 ATKAADLARPLKEAGFPYK-IHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (232)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~-~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVli 197 (232)
..+ ....++.+. ..+..|+ +.+.|++++++.++||||||+++ + +.+. +||++++|+++++||||+
T Consensus 71 ----~~~---~~~~~~~~~~~~~~~G~-p~~~I~~~a~~~~~DLIV~Gs~~-~-~~~~----lgSva~~v~~~a~~pVLv 136 (144)
T PRK15118 71 ----TEL---STNAGYPITETLSGSGD-LGQVLVDAIKKYDMDLVVCGHHQ-D-FWSK----LMSSARQLINTVHVDMLI 136 (144)
T ss_pred ----HHH---HHhCCCCceEEEEEecC-HHHHHHHHHHHhCCCEEEEeCcc-c-HHHH----HHHHHHHHHhhCCCCEEE
Confidence 111 122366654 3444565 59999999999999999999996 3 3333 479999999999999999
Q ss_pred EcCC
Q 026810 198 VRYP 201 (232)
Q Consensus 198 Vp~~ 201 (232)
||..
T Consensus 137 v~~~ 140 (144)
T PRK15118 137 VPLR 140 (144)
T ss_pred ecCC
Confidence 9964
No 8
>PRK10116 universal stress protein UspC; Provisional
Probab=99.89 E-value=5.5e-22 Score=150.17 Aligned_cols=139 Identities=15% Similarity=0.222 Sum_probs=100.3
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHH
Q 026810 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (232)
Q Consensus 39 ~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (232)
|++++|||++|+|+.+..++++|+.+|+.++++|+++|+++...... ... ....+...+...+..+..
T Consensus 1 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~- 68 (142)
T PRK10116 1 MSYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYN----QFA-------APMLEDLRSVMQEETQSF- 68 (142)
T ss_pred CCCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccch----hhh-------HHHHHHHHHHHHHHHHHH-
Confidence 57899999999999999999999999999999999999986532110 000 000112222222222222
Q ss_pred HHHHHHhhhhhhhCCcceE-EEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEE
Q 026810 119 ATKAADLARPLKEAGFPYK-IHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (232)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~-~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVli 197 (232)
++++. ...+++.. ..+..|+ +.+.|++++++.++||||||+++++.+.++ + |++++++++++||||+
T Consensus 69 ---l~~~~---~~~~~~~~~~~~~~G~-~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~---~--s~a~~v~~~~~~pVLv 136 (142)
T PRK10116 69 ---LDKLI---QDADYPIEKTFIAYGE-LSEHILEVCRKHHFDLVICGNHNHSFFSRA---S--CSAKRVIASSEVDVLL 136 (142)
T ss_pred ---HHHHH---HhcCCCeEEEEEecCC-HHHHHHHHHHHhCCCEEEEcCCcchHHHHH---H--HHHHHHHhcCCCCEEE
Confidence 22222 22366554 4445565 599999999999999999999999888776 4 7999999999999999
Q ss_pred EcCC
Q 026810 198 VRYP 201 (232)
Q Consensus 198 Vp~~ 201 (232)
||.+
T Consensus 137 v~~~ 140 (142)
T PRK10116 137 VPLT 140 (142)
T ss_pred EeCC
Confidence 9964
No 9
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.89 E-value=5.1e-22 Score=147.95 Aligned_cols=140 Identities=28% Similarity=0.398 Sum_probs=99.2
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
|+++||||+|+++.+..+++||+.+|+..+++|+++||.+........ ...................
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 67 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFS-------------AAEDEESEEEAEEEEQARQ 67 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHH-------------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccc-------------cccccccccccchhhhhhh
Confidence 579999999999999999999999999999999999999865421100 0000000000000000000
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEc
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp 199 (232)
... .................| ++.+.|++++++.++|+||||+++++.+.++ ++||++++|+++++|||||||
T Consensus 68 ~~~---~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~---~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 68 AEA---EEAEAEGGIVIEVVIESG-DVADAIIEFAEEHNADLIVMGSRGRSGLERL---LFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp HHH---HHHHHHTTSEEEEEEEES-SHHHHHHHHHHHTTCSEEEEESSSTTSTTTS---SSHHHHHHHHHHTSSEEEEEE
T ss_pred HHH---HHHhhhccceeEEEEEee-ccchhhhhccccccceeEEEeccCCCCccCC---CcCCHHHHHHHcCCCCEEEeC
Confidence 000 111122244445555555 5699999999999999999999999999999 999999999999999999997
No 10
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.87 E-value=9.9e-21 Score=141.00 Aligned_cols=132 Identities=18% Similarity=0.157 Sum_probs=102.5
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHH
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (232)
+||||+|+++.+..++++|..+|...+++|+++|+++.+..... .. .. ... ...++..
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~----------~~----~~----~~~----~~~~~~~ 58 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP----------SQ----LE----VNV----QRARKLL 58 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc----------ch----hH----HHH----HHHHHHH
Confidence 59999999999999999999999999999999999976432110 00 00 001 1111222
Q ss_pred HHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEc
Q 026810 123 ADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 123 ~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp 199 (232)
+.+...+...+++++.....++++.+.|+++++++++|+||||+++++.+.+. ++||++.+++++++|||++|+
T Consensus 59 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~---~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 59 RQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDR---LFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred HHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccce---ecCchHHHHHhcCCCCEEEeC
Confidence 22333344458888888877656799999999999999999999999998888 899999999999999999986
No 11
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.84 E-value=4.3e-20 Score=136.55 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=95.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHH
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (232)
+||||+|+|+.+..+++||+.+|...+++|+++||.+.... . ..+...+.++.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~------~-----------~~~~~~~~l~~---------- 53 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN------R-----------LSEAERRRLAE---------- 53 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc------c-----------CCHHHHHHHHH----------
Confidence 59999999999999999999999999999999999864321 0 01111121111
Q ss_pred HHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC-CCcEEEEc
Q 026810 123 ADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVR 199 (232)
Q Consensus 123 ~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~-~~PVliVp 199 (232)
+...+.+.++ +.....++++++.|.++++++++|+||||+++++.+.++ ++||++++|++++ +|||+|++
T Consensus 54 --~~~~~~~~~~--~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~---~~Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 54 --ALRLAEELGA--EVVTLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWREL---FRGSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred --HHHHHHHcCC--EEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHH---hcccHHHHHHHhCCCCeEEEeC
Confidence 1111111233 444556666799999999999999999999999999999 9999999999999 99999985
No 12
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.78 E-value=2e-17 Score=125.75 Aligned_cols=149 Identities=27% Similarity=0.269 Sum_probs=109.4
Q ss_pred CCCcEEEEEec-CChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHH
Q 026810 39 LARRKIGVAVD-LSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (232)
Q Consensus 39 ~~~~~ILv~vD-~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (232)
.++++|++++| +++.+..++++|..++...+..+.+++|.+............... . .-.........
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~ 71 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADA--------P---IPLSEEELEEE 71 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccc--------h---hhhhHHHHHHH
Confidence 46899999999 999999999999999999999999999986543221111100000 0 01111111112
Q ss_pred HHHHHHHhhhhhhhCCcc-eEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEE
Q 026810 118 TATKAADLARPLKEAGFP-YKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (232)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~-v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVl 196 (232)
..+..+.+...+...++. ++.....|.+..+.|+.+++++++|+||||+++++.+.++ ++||++++++++++|||+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~---llGsvs~~v~~~~~~pVl 148 (154)
T COG0589 72 AEELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRL---LLGSVAEKVLRHAPCPVL 148 (154)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccce---eeehhHHHHHhcCCCCEE
Confidence 222223333334444666 5888888887689999999999999999999999999998 999999999999999999
Q ss_pred EEcCC
Q 026810 197 VVRYP 201 (232)
Q Consensus 197 iVp~~ 201 (232)
++|..
T Consensus 149 vv~~~ 153 (154)
T COG0589 149 VVRSE 153 (154)
T ss_pred EEccC
Confidence 99964
No 13
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.78 E-value=1.4e-17 Score=122.57 Aligned_cols=130 Identities=32% Similarity=0.428 Sum_probs=101.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHH
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (232)
+|||++|+++.+..++++|..+|...+++|+++|+.+....... ...+......+ +.+
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~--------------~~~~~~~~~~~--------~~l 58 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA--------------ELAELLEEEAR--------ALL 58 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch--------------hHHHHHHHHHH--------HHH
Confidence 58999999999999999999999999999999999865332110 00111111111 222
Q ss_pred HHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 123 ADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 123 ~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
+.+...+...++++......|.+ .+.|.+++++.++|+||||+++++.+.+. ++|+++.+++++++|||+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~dlvvig~~~~~~~~~~---~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 59 EALREALAEAGVKVETVVLEGDP-AEAILEAAEELGADLIVMGSRGRSGLRRL---LLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HHHHHHHhcCCCceEEEEecCCC-HHHHHHHHHHcCCCEEEEcCCCCCcccee---eeccHHHHHHhCCCCCEEeC
Confidence 22222223447888888888876 99999999999999999999999998888 99999999999999999985
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.53 E-value=1.8e-13 Score=117.87 Aligned_cols=141 Identities=13% Similarity=0.077 Sum_probs=90.4
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCC--CCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHH
Q 026810 38 SLARRKIGVAVDLSDESAFAVRWAVHHYLRP--GDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFD 115 (232)
Q Consensus 38 ~~~~~~ILv~vD~s~~s~~al~~A~~la~~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (232)
+++++|||||+|+|+.|..|+++|+.+|+.. +++|+++||.+...... . . .. .....+.+.+..+
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~---~--~-------~~-~~~~~eelle~~~ 68 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP---E--G-------QD-ELAAAEELLERVE 68 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc---c--h-------hH-HHHHHHHHHHHHH
Confidence 4689999999999999999999999999985 69999999987532110 0 0 00 1111111222222
Q ss_pred HHHHHHHHHhhhhhhhCCcceEEEEeeC-------CchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHh
Q 026810 116 TFTATKAADLARPLKEAGFPYKIHIVKD-------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV 188 (232)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl 188 (232)
+..++.+.+ ...+++++..+..+ +++++.|+++|+++++||||||..=....... ++. --+.-+
T Consensus 69 ~~~~~~l~~-----~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~---~~~-~~~~~~ 139 (357)
T PRK12652 69 VWATEDLGD-----DASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAP---MLQ-PLEREL 139 (357)
T ss_pred HHHHHhhhc-----ccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCc---ccc-hHHHHH
Confidence 222111111 22488888888763 35699999999999999999998633322222 333 334556
Q ss_pred ccCCCcEEEEcC
Q 026810 189 HHCVCPVVVVRY 200 (232)
Q Consensus 189 ~~~~~PVliVp~ 200 (232)
.++.|.+=.-|-
T Consensus 140 ~~~~~~~~~~~~ 151 (357)
T PRK12652 140 ARAGITYEEAPV 151 (357)
T ss_pred HhcCCceecCCc
Confidence 667777665553
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.24 E-value=2.2e-10 Score=110.33 Aligned_cols=127 Identities=17% Similarity=0.104 Sum_probs=98.2
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
...+|||||++++.+..++++|.++|.+.+++++++||........ ....++.+.+.++
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~-----------------~~~~~~~l~~~~~---- 307 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRL-----------------PEKKRRAILSALR---- 307 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcC-----------------CHHHHHHHHHHHH----
Confidence 4688999999999999999999999999999999999985422100 1112222222211
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCC-CcEEEE
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVV 198 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~-~PVliV 198 (232)
+++ ....++..+.|+++++.|+++|++++++.||||..+++.+ + +.||+++++++.++ +.|.||
T Consensus 308 -----lA~-----~lGa~~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~---~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 308 -----LAQ-----ELGAETATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--W---RRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred -----HHH-----HcCCEEEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--c---cCCCHHHHHHHhCCCCCEEEE
Confidence 222 2234567778888999999999999999999999988876 6 67899999999986 999999
Q ss_pred cCCC
Q 026810 199 RYPD 202 (232)
Q Consensus 199 p~~~ 202 (232)
+...
T Consensus 373 ~~~~ 376 (895)
T PRK10490 373 ALDE 376 (895)
T ss_pred eCCc
Confidence 8543
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.10 E-value=1.4e-09 Score=100.40 Aligned_cols=131 Identities=18% Similarity=0.133 Sum_probs=106.2
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
...+||||++.++.+...+++|.++|.+.+++++.+||..+..... .+..++.+.+..
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~-----------------~~~~~~~l~~~~----- 304 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRL-----------------SEKEARRLHENL----- 304 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccc-----------------cHHHHHHHHHHH-----
Confidence 4589999999999999999999999999999999999986543211 122233333321
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCC-CcEEEE
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVV 198 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~-~PVliV 198 (232)
++++ ....++.++.|++++++|.++|+.+++.-||+|.+.++.|.++ |.|+.++++++..+ +.|.||
T Consensus 305 ----~Lae-----~lGae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~---~~~~l~~~L~~~~~~idv~ii 372 (890)
T COG2205 305 ----RLAE-----ELGAEIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRL---FKGSLADRLAREAPGIDVHIV 372 (890)
T ss_pred ----HHHH-----HhCCeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHH---hcccHHHHHHhcCCCceEEEe
Confidence 1222 2346888888899999999999999999999999999999998 89999999999975 999999
Q ss_pred cCCCCC
Q 026810 199 RYPDDK 204 (232)
Q Consensus 199 p~~~~~ 204 (232)
+...+.
T Consensus 373 ~~~~~~ 378 (890)
T COG2205 373 ALDAPP 378 (890)
T ss_pred eCCCCc
Confidence 986664
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.41 E-value=1.8e-06 Score=59.35 Aligned_cols=84 Identities=17% Similarity=0.077 Sum_probs=70.8
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 026810 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAA 123 (232)
Q Consensus 44 ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (232)
|+++++++..|..++.++.+++ ..+.++..+|+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~--------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV--------------------------------------------- 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH---------------------------------------------
Confidence 6899999999999999999987 457777777773
Q ss_pred HhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccC-chhHHHhccCCCcEEE
Q 026810 124 DLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLG-SVSDYCVHHCVCPVVV 197 (232)
Q Consensus 124 ~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~g-s~~~~vl~~~~~PVli 197 (232)
...+.+.+.+++.++|+|++|++........ +.| +++.++.+.++|||+.
T Consensus 35 ---------------------~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~---~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 35 ---------------------AFVRILKRLAAEEGADVIILGHNADDVAGRR---LGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred ---------------------HHHHHHHHHHHHcCCCEEEEcCCchhhhhhc---cCchhhhhhcccccCCceeC
Confidence 2466777888889999999999988877776 666 8999999999999973
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.84 E-value=0.0012 Score=63.63 Aligned_cols=70 Identities=11% Similarity=0.062 Sum_probs=53.8
Q ss_pred CCCcCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 7 QPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 7 ~~~~~~~~~pvl~v~~~~~~~~~~~~~~~~~~~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
+++-++++|+|.+.-|....... .........+|.+.+=+.++++.|+.||.++|...+..++++|....
T Consensus 600 ~~VL~~ApCsVgIlVDRg~~~~~----~~~~~~~~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~ 669 (832)
T PLN03159 600 QNVLANAPCSVGILVDRGLSGAT----RLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPG 669 (832)
T ss_pred HHHHccCCCCEEEEEeCCCCccc----cccccccceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcc
Confidence 56788999999888754322000 01122245799999999999999999999999999999999999854
No 19
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.45 E-value=0.0038 Score=60.30 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=85.8
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHH--hCCCCCEEEEEEEecCCccCCCCCCCCCccccCcc-hhhhH--HHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHH--YLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSE-NASNI--EHQKQLEDDF 114 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~l--a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~ 114 (232)
..-|||+|+...++-...+..+-.. .++..-.++++|.++.......... .+...... ....+ ...+.+...+
T Consensus 457 ~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~--~h~~~~~~~~~~~~~~~~~~~i~~af 534 (832)
T PLN03159 457 AELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLI--VHNTRKSGRPALNRTQAQSDHIINAF 534 (832)
T ss_pred CceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCcccee--eeecccccccccccccccccHHHHHH
Confidence 4578999999998888887764443 2334458999999875432211000 00000000 00000 0011222222
Q ss_pred HHHHHHHHHHhhhhhhhCCcceEEEEeeC--CchHHHHHHHHHhcCCCEEEEeeCCCCccccc---CCCccCchhHHHhc
Q 026810 115 DTFTATKAADLARPLKEAGFPYKIHIVKD--HDMRERLCLEIERLSLSAVIMGSRGFGAEKRG---SDGKLGSVSDYCVH 189 (232)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~g--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~---~~~~~gs~~~~vl~ 189 (232)
+.+.++ . .++.++...... ...++.|+..|++..+++|+++.|.+....+. .+..++.+..+|++
T Consensus 535 ~~~~~~--------~--~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~ 604 (832)
T PLN03159 535 ENYEQH--------A--GCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLA 604 (832)
T ss_pred HHHHhh--------c--CceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHc
Confidence 221111 0 145666544443 36899999999999999999999865332221 01245678899999
Q ss_pred cCCCcEEEEcC
Q 026810 190 HCVCPVVVVRY 200 (232)
Q Consensus 190 ~~~~PVliVp~ 200 (232)
+++|+|-|.=.
T Consensus 605 ~ApCsVgIlVD 615 (832)
T PLN03159 605 NAPCSVGILVD 615 (832)
T ss_pred cCCCCEEEEEe
Confidence 99999988733
No 20
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=95.94 E-value=0.14 Score=40.13 Aligned_cols=37 Identities=22% Similarity=0.103 Sum_probs=32.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
+|+|++.|..+|..++..+..++...+.++.++|+-.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5899999999999999999998777777899999864
No 21
>PRK12342 hypothetical protein; Provisional
Probab=95.71 E-value=0.13 Score=42.77 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=66.1
Q ss_pred EecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 026810 47 AVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLA 126 (232)
Q Consensus 47 ~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (232)
+.-.++.+.+|++.|+++- ..|++|+++++-+... .. .+.+++ ..
T Consensus 30 ~~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a--------------------~~--~~l~r~------------al 74 (254)
T PRK12342 30 EAKISQFDLNAIEAASQLA-TDGDEIAALTVGGSLL--------------------QN--SKVRKD------------VL 74 (254)
T ss_pred CccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChH--------------------hH--HHHHHH------------HH
Confidence 4457899999999999998 6899999999875421 00 001111 00
Q ss_pred hhhhhCCcceEEEEeeCCch---HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEE
Q 026810 127 RPLKEAGFPYKIHIVKDHDM---RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (232)
Q Consensus 127 ~~~~~~~~~v~~~~~~g~~~---~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVli 197 (232)
..-...++-+.-....|.++ +..|..+++..++|||++|...-.. .-|.+.-.+......|.+-
T Consensus 75 amGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~-------~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 75 SRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDL-------YAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred HcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccC-------CCCCHHHHHHHHhCCCcEe
Confidence 11111122222222234444 7889999998899999999764222 3355666666666666543
No 22
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=95.58 E-value=0.12 Score=42.92 Aligned_cols=109 Identities=10% Similarity=0.022 Sum_probs=65.8
Q ss_pred EecCChhHHHHHHHHHHHhCCCC-CEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 026810 47 AVDLSDESAFAVRWAVHHYLRPG-DAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADL 125 (232)
Q Consensus 47 ~vD~s~~s~~al~~A~~la~~~~-~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (232)
..-.++.+.+|++.|+++....+ ++|+++++-+... +....+++.+
T Consensus 31 ~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a----------------------~~~~~lr~aL----------- 77 (256)
T PRK03359 31 DAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL----------------------TNAKGRKDVL----------- 77 (256)
T ss_pred ccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch----------------------hhHHHHHHHH-----------
Confidence 34578999999999999999875 7999999975421 0011122111
Q ss_pred hhhhhhCCcceEEEEeeCCc---hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEE
Q 026810 126 ARPLKEAGFPYKIHIVKDHD---MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (232)
Q Consensus 126 ~~~~~~~~~~v~~~~~~g~~---~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVl 196 (232)
..-...++.+.-....|.+ .+..|..++++.++|||++|...... --|.+.-.+......|.+
T Consensus 78 -AmGaD~avli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~-------~tgqvg~~lAe~Lg~P~v 143 (256)
T PRK03359 78 -SRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDL-------YAQQVGLLVGEILNIPAI 143 (256)
T ss_pred -HcCCCEEEEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccC-------CCCcHHHHHHHHhCCCce
Confidence 1111112222222122222 47788889999999999999765322 235566666666666654
No 23
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=95.18 E-value=0.82 Score=35.72 Aligned_cols=93 Identities=20% Similarity=0.149 Sum_probs=55.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHH
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (232)
+|+|++.|-.+|...+..+..+....+.++.++||-..-... .....+.+.+
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~------------------s~~~~~~v~~---------- 52 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREE------------------SDEEAEFVEE---------- 52 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCC------------------HHHHHHHHHH----------
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc------------------cchhHHHHHH----------
Confidence 699999999999999999999999999999999998642200 1111111211
Q ss_pred HHhhhhhhhCCcceEEEEeeC-----Cch--------HHHHHHHHHhcCCCEEEEeeCC
Q 026810 123 ADLARPLKEAGFPYKIHIVKD-----HDM--------RERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 123 ~~~~~~~~~~~~~v~~~~~~g-----~~~--------~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
.+...++++.+....- ... -..+.+.|.+++++.|++|.+.
T Consensus 53 -----~~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 53 -----ICEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp -----HHHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred -----HHHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 1222366665555541 111 1366688999999999999874
No 24
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=94.18 E-value=1.1 Score=34.91 Aligned_cols=37 Identities=30% Similarity=0.204 Sum_probs=32.5
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
+|+|+++|..+|..++..+.......+.++.++|+-.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~ 37 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDH 37 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 5899999999999999999888776678899999964
No 25
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=94.12 E-value=0.37 Score=37.91 Aligned_cols=117 Identities=12% Similarity=0.079 Sum_probs=67.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHH
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (232)
+++|++++.+|..+.++.++.-.+.+ .+.+|.++-.-. +.+.+...
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~-~g~~V~vv~T~~--------------------------A~~fi~~~------- 46 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTK-RGYQVTVLMTKA--------------------------ATKFITPL------- 46 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHH-CCCEEEEEEChh--------------------------HHHHcCHH-------
Confidence 47999999999999999888887755 577766544221 01111100
Q ss_pred HHHHhhhhhhhCCcceEEEEeeCCc--hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC--CCcEE
Q 026810 121 KAADLARPLKEAGFPYKIHIVKDHD--MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC--VCPVV 196 (232)
Q Consensus 121 ~~~~~~~~~~~~~~~v~~~~~~g~~--~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~--~~PVl 196 (232)
.++.+. +.++......... ....| +.+ ..+|++|+..-..+.+.++..|+-.+....++... ++||+
T Consensus 47 ~l~~l~------~~~v~~~~~~~~~~~~~~hi-~l~--~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvv 117 (182)
T PRK07313 47 TLQVLS------KNPVHLDVMDEHDPKLMNHI-ELA--KRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKL 117 (182)
T ss_pred HHHHHh------CCceEeccccccccCCcccc-ccc--cccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEE
Confidence 011111 2222222111111 01111 223 34899999998888888875555555444455455 89999
Q ss_pred EEcC
Q 026810 197 VVRY 200 (232)
Q Consensus 197 iVp~ 200 (232)
++|.
T Consensus 118 i~Pa 121 (182)
T PRK07313 118 IAPA 121 (182)
T ss_pred EEEC
Confidence 9996
No 26
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=93.71 E-value=0.63 Score=41.28 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=72.9
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHH
Q 026810 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (232)
Q Consensus 39 ~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (232)
+..++|++++.+|-.+.+++++.-.+-+ .|.+|.++-.-. +.+.+...
T Consensus 4 l~~k~IllgvTGsiaa~k~~~lv~~L~~-~g~~V~vv~T~~--------------------------A~~fi~~~----- 51 (399)
T PRK05579 4 LAGKRIVLGVSGGIAAYKALELVRRLRK-AGADVRVVMTEA--------------------------AKKFVTPL----- 51 (399)
T ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHHHh-CCCEEEEEECHh--------------------------HHHHHhHH-----
Confidence 4568999999999999999988877744 677766554321 11111110
Q ss_pred HHHHHHhhhhhhhCCcceEEEEe---eCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcE
Q 026810 119 ATKAADLARPLKEAGFPYKIHIV---KDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPV 195 (232)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~~~~~---~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PV 195 (232)
.++.+. +.++-.... .+.+ ...| ..+++ +|++|+..-..+.+.++..|+-.+....++..+++||
T Consensus 52 --~l~~l~------~~~V~~~~~~~~~~~~-~~hi-~l~~~--aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pv 119 (399)
T PRK05579 52 --TFQALS------GNPVSTDLWDPAAEAA-MGHI-ELAKW--ADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPV 119 (399)
T ss_pred --HHHHhh------CCceEccccccccCCC-cchh-hcccc--cCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCE
Confidence 011111 222221111 1111 1222 33444 9999999999898888866666667777777789999
Q ss_pred EEEcC
Q 026810 196 VVVRY 200 (232)
Q Consensus 196 liVp~ 200 (232)
+++|.
T Consensus 120 vi~Pa 124 (399)
T PRK05579 120 LVAPA 124 (399)
T ss_pred EEEeC
Confidence 99994
No 27
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=93.39 E-value=0.54 Score=36.83 Aligned_cols=43 Identities=5% Similarity=0.013 Sum_probs=30.7
Q ss_pred CCCEEEEeeCCCCcccccCCCccCchhHHHhccC--CCcEEEEcC
Q 026810 158 SLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC--VCPVVVVRY 200 (232)
Q Consensus 158 ~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~--~~PVliVp~ 200 (232)
.+|++|+..-..+.+.++..|+-.+....++... .+||+++|.
T Consensus 76 ~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~Pa 120 (177)
T TIGR02113 76 KADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPA 120 (177)
T ss_pred hhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeC
Confidence 4899999998888888875444444444444443 799999994
No 28
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=92.87 E-value=1.1 Score=40.70 Aligned_cols=123 Identities=11% Similarity=0.036 Sum_probs=76.2
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHH
Q 026810 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (232)
Q Consensus 39 ~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (232)
...++|++++.+|-.+.+++++.-.+.+ .|.+|+++..-.. .+.+... .
T Consensus 68 l~~k~IllgVtGsIAayka~~lvr~L~k-~G~~V~VvmT~sA--------------------------~~fv~p~----~ 116 (475)
T PRK13982 68 LASKRVTLIIGGGIAAYKALDLIRRLKE-RGAHVRCVLTKAA--------------------------QQFVTPL----T 116 (475)
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHHHh-CcCEEEEEECcCH--------------------------HHHhhHH----H
Confidence 4569999999999999999998888755 6887666653211 1111110 0
Q ss_pred HHHHHHhhhhhhhCCcceEEEEeeCC--chHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEE
Q 026810 119 ATKAADLARPLKEAGFPYKIHIVKDH--DMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (232)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~~~~~~g~--~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVl 196 (232)
++.+. +.++........ ..... ++.+++ +|++|+..-..+.+.++..|+-.+....++....+||+
T Consensus 117 ---~~~ls------~~~V~~d~~~~~~~~~~~H-i~la~~--aD~~vVAPATANTIAKiA~GiADnLlt~v~La~~~Pvl 184 (475)
T PRK13982 117 ---ASALS------GQRVYTDLFDPESEFDAGH-IRLARD--CDLIVVAPATADLMAKMANGLADDLASAILLAANRPIL 184 (475)
T ss_pred ---HHHhc------CCceEecCCCcccccCccc-hhhhhh--cCEEEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEE
Confidence 00010 222222211110 00111 244555 99999999988888888666666666777778899999
Q ss_pred EEcCCCCC
Q 026810 197 VVRYPDDK 204 (232)
Q Consensus 197 iVp~~~~~ 204 (232)
++|.-.+.
T Consensus 185 iaPaMN~~ 192 (475)
T PRK13982 185 LAPAMNPL 192 (475)
T ss_pred EEEcCCHH
Confidence 99985443
No 29
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=92.61 E-value=2.6 Score=35.09 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=69.1
Q ss_pred EecCChhHHHHHHHHHHHhC-CCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 026810 47 AVDLSDESAFAVRWAVHHYL-RPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADL 125 (232)
Q Consensus 47 ~vD~s~~s~~al~~A~~la~-~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (232)
+...++.+..|++.|+++.. ..+.+++++++-+... .+.+.+ .
T Consensus 32 ~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a------------------------~~~lr~------------a 75 (260)
T COG2086 32 PLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA------------------------EEALRE------------A 75 (260)
T ss_pred CcccChhhHHHHHHHHHhhccCCCceEEEEEecchhh------------------------HHHHHH------------H
Confidence 34567889999999999999 6999999999975421 111211 1
Q ss_pred hhhhhhCCcceEEEEeeCCc---hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEc
Q 026810 126 ARPLKEAGFPYKIHIVKDHD---MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 126 ~~~~~~~~~~v~~~~~~g~~---~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp 199 (232)
...-....+-++-+...+.+ .+..|...++..+.|||++|...-.. --|.+...+......|.+-.=
T Consensus 76 LAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~-------~t~qvg~~lAe~Lg~P~~t~v 145 (260)
T COG2086 76 LAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDG-------DTGQVGPLLAELLGWPQVTYV 145 (260)
T ss_pred HhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccC-------CccchHHHHHHHhCCceeeeE
Confidence 11111112222221222322 57889999999999999999865321 335566667777777776543
No 30
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=92.50 E-value=1.1 Score=35.34 Aligned_cols=123 Identities=10% Similarity=0.055 Sum_probs=67.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHH
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (232)
+++|++++.+|-.+.++++....+.+..|.+|.++-.-. +.+.+.... ....+
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~T~~--------------------------A~~fv~~~~-~~~~~ 53 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVGEIETHLVISQA--------------------------ARQTLAHET-DFSLR 53 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEECHH--------------------------HHHHHHHHH-CCChh
Confidence 378999999999999999999888765677765554321 111111110 00000
Q ss_pred HHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHH---HhccCCCcEEE
Q 026810 121 KAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDY---CVHHCVCPVVV 197 (232)
Q Consensus 121 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~---vl~~~~~PVli 197 (232)
.+..+.. .+.. ..+....|..-. ..+|++|+..-..+.+.+...|+-.+.... ++...++|+++
T Consensus 54 ~~~~l~~-------~v~~----~~~~~~~i~~~s--~~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii 120 (185)
T PRK06029 54 DVQALAD-------VVHD----VRDIGASIASGS--FGTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVL 120 (185)
T ss_pred hHHHhcC-------cccC----hhhcccChhhcC--chhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEE
Confidence 0111100 0100 000011111111 248999999988888888754444444443 44457899999
Q ss_pred EcCCCC
Q 026810 198 VRYPDD 203 (232)
Q Consensus 198 Vp~~~~ 203 (232)
+|..-+
T Consensus 121 ~P~~M~ 126 (185)
T PRK06029 121 CVRETP 126 (185)
T ss_pred Eecccc
Confidence 996443
No 31
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=92.45 E-value=1.2 Score=35.48 Aligned_cols=124 Identities=12% Similarity=0.020 Sum_probs=67.6
Q ss_pred CCCCcEEEEEecCChhHHH-HHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHH--H
Q 026810 38 SLARRKIGVAVDLSDESAF-AVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDD--F 114 (232)
Q Consensus 38 ~~~~~~ILv~vD~s~~s~~-al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 114 (232)
+...++|++++-||-.+.+ +++.+-.+. +.|.+|+++-.-... +..... -
T Consensus 2 ~l~~k~IllgVTGsiaa~k~a~~lir~L~-k~G~~V~vv~T~aA~--------------------------~~~~~~~~~ 54 (196)
T PRK08305 2 SLKGKRIGFGLTGSHCTYDEVMPEIEKLV-DEGAEVTPIVSYTVQ--------------------------TTDTRFGKA 54 (196)
T ss_pred CCCCCEEEEEEcCHHHHHHHHHHHHHHHH-hCcCEEEEEECHhHH--------------------------HHhhhcCCh
Confidence 3456899999999999999 588776664 457777665432110 000000 0
Q ss_pred HHHHHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc---C
Q 026810 115 DTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---C 191 (232)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~---~ 191 (232)
.++.. .++.+. +.++.... .+.+ +++.+ ..+|++|+..-..+.+.++..|+-.+....++.. .
T Consensus 55 ~~~~~-~l~~ls------~~~v~~~~-~~~~----~isls--~~aD~mvIAPaSanTLAKiA~GiaDnll~~aa~a~lke 120 (196)
T PRK08305 55 EEWIK-KIEEIT------GNKVINTI-VEAE----PLGPK--KLLDCMVIAPCTGNTMAKLANAITDSPVLMAAKATLRN 120 (196)
T ss_pred HHHHH-HHHHHH------CCCcEEec-CCCc----cCccc--cccCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcC
Confidence 00000 011111 22332221 1111 12223 4489999999888888888444444444444432 3
Q ss_pred CCcEEEEcCCC
Q 026810 192 VCPVVVVRYPD 202 (232)
Q Consensus 192 ~~PVliVp~~~ 202 (232)
.+||+++|.-.
T Consensus 121 ~~PvvlaPAMN 131 (196)
T PRK08305 121 QRPVVLAISTN 131 (196)
T ss_pred CCCEEEEECCC
Confidence 79999999733
No 32
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=91.95 E-value=3.4 Score=31.51 Aligned_cols=87 Identities=22% Similarity=0.152 Sum_probs=54.0
Q ss_pred EEEEecC-----ChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHH
Q 026810 44 IGVAVDL-----SDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (232)
Q Consensus 44 ILv~vD~-----s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (232)
|||-++- ++.+..++..|.+++...|.+++++.+-+... . .+.+.+
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~--------------------~---~~~l~~------ 52 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEE--------------------A---AEALRK------ 52 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC--------------------H---HHHHHH------
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchh--------------------h---HHHHhh------
Confidence 5555553 48899999999999999999999998873111 0 111111
Q ss_pred HHHHHHhhhhhhhCCcceEEEEeeC-------CchHHHHHHHHHhcCCCEEEEeeCC
Q 026810 119 ATKAADLARPLKEAGFPYKIHIVKD-------HDMRERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~~~~~~g-------~~~~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
.+...|..--+..... ...+..|.+.+++.++|+|++|...
T Consensus 53 ---------~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 53 ---------ALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp ---------HHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSH
T ss_pred ---------hhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 1122254422222221 1156689999999999999999754
No 33
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=91.84 E-value=0.24 Score=36.51 Aligned_cols=113 Identities=14% Similarity=0.018 Sum_probs=68.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (232)
+||++++.+|..+..+.++...+.+. |.+|.++-.- .+.+.+....
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g~~v~vv~S~--------------------------~A~~~~~~~~------- 46 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-GWEVRVVLSP--------------------------SAERFVTPEG------- 46 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-TSEEEEEESH--------------------------HHHHHSHHHG-------
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-CCEEEEEECC--------------------------cHHHHhhhhc-------
Confidence 68999999999999988888887765 7775544321 1111111111
Q ss_pred HHHhhhhhhhCCcceEEE--EeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC---CCcEE
Q 026810 122 AADLARPLKEAGFPYKIH--IVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC---VCPVV 196 (232)
Q Consensus 122 ~~~~~~~~~~~~~~v~~~--~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~---~~PVl 196 (232)
.. +-++... ..........+ +..++ +|++|+..-..+.+.++..|+-.+....++..+ ++||+
T Consensus 47 --~~-------~~~v~~~~~~~~~~~~~~~~-~~~~~--~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvv 114 (129)
T PF02441_consen 47 --LT-------GEPVYTDWDTWDRGDPAEHI-ELSRW--ADAMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVV 114 (129)
T ss_dssp --HC-------CSCEECTHCTCSTTTTTCHH-HHHHT--ESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEE
T ss_pred --cc-------cchhhhccccCCCCCCcCcc-ccccc--CCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeE
Confidence 00 1111111 01122224433 33444 999999998888888886667777777788877 99999
Q ss_pred EEcC
Q 026810 197 VVRY 200 (232)
Q Consensus 197 iVp~ 200 (232)
++|.
T Consensus 115 i~P~ 118 (129)
T PF02441_consen 115 IAPA 118 (129)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9996
No 34
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=90.69 E-value=6.3 Score=30.34 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=31.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCC--CCEEEEEEEecC
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRP--GDAVILVHVSPT 80 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~--~~~l~ll~v~~~ 80 (232)
+|+|++.+-.+|..++..+.++.... +.+++++|+-..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 58999999999999998888877655 668889998753
No 35
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=90.19 E-value=3.1 Score=36.81 Aligned_cols=119 Identities=9% Similarity=0.033 Sum_probs=69.2
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
..++|++++.+|-.+..++++...+.+ .+.++.++-.-. +.+.+...
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~L~~-~g~~V~vv~T~~--------------------------A~~fv~~~------ 48 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRELVR-QGAEVKVIMTEA--------------------------AKKFITPL------ 48 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHh-CCCEEEEEECHh--------------------------HHHHHHHH------
Confidence 358999999999999999998877754 577766544211 11111110
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEc
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp 199 (232)
.+..+. +.++.............=+..+. .+|++|+..-..+.+.++..|+-.+....++..+.+|++++|
T Consensus 49 -~l~~~~------~~~v~~~~~~~~~~~~~hi~l~~--~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~~plviaP 119 (390)
T TIGR00521 49 -TLEALS------GHKVVTELWGPIEHNALHIDLAK--WADLILIAPATANTISKIAHGIADDLVSTTALAASAPIILAP 119 (390)
T ss_pred -HHHHhh------CCceeehhccccccccchhhccc--ccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHhCCCEEEEe
Confidence 011111 22221111111110000022233 589999999888888888555655666666666779999999
Q ss_pred C
Q 026810 200 Y 200 (232)
Q Consensus 200 ~ 200 (232)
.
T Consensus 120 a 120 (390)
T TIGR00521 120 A 120 (390)
T ss_pred C
Confidence 8
No 36
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=90.06 E-value=4.8 Score=38.91 Aligned_cols=71 Identities=10% Similarity=-0.017 Sum_probs=50.7
Q ss_pred CCcCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCc
Q 026810 8 PDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSV 82 (232)
Q Consensus 8 ~~~~~~~~pvl~v~~~~~~~~~~~~~~~~~~~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~ 82 (232)
.+.++++|-+-+.-+... ...-..+ ......+|.+.+=+....+.|+.++.+++......+++++.+....
T Consensus 585 ~vl~~aPCSVgIlvdRg~--~~~~~~~--~~~~~~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~ 655 (769)
T KOG1650|consen 585 NVLKNAPCSVGILVDRGL--RRSGVTQ--KRGSSYKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDES 655 (769)
T ss_pred HHHhcCCCeEEEEEecCc--cccccee--cccceeEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccch
Confidence 456778888877775420 0000011 1115678888888999999999999999999999999999987543
No 37
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=89.96 E-value=4.4 Score=32.05 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=31.3
Q ss_pred cCCCEEEEeeCCCCcccccCCCccCchhHHHhc---cCCCcEEEEcCCCC
Q 026810 157 LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH---HCVCPVVVVRYPDD 203 (232)
Q Consensus 157 ~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~---~~~~PVliVp~~~~ 203 (232)
..+|++|+..-..+.+.++..|+-.+.....+. ...+||+++|.-.+
T Consensus 78 ~~~D~mVIaPcTanTLAKiA~GiaDnlv~~aa~a~Lke~rPlvlaPamN~ 127 (187)
T TIGR02852 78 VPLDCMVIAPLTGNSMSKLANAMTDSPVLMAAKATLRNNKPVVLAISTND 127 (187)
T ss_pred hhhCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEECcCH
Confidence 458999999888888888744443333332332 23799999997443
No 38
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=88.66 E-value=4.1 Score=30.97 Aligned_cols=64 Identities=27% Similarity=0.407 Sum_probs=44.9
Q ss_pred hhCCcceEEEEeeCCchHH---HHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC
Q 026810 130 KEAGFPYKIHIVKDHDMRE---RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204 (232)
Q Consensus 130 ~~~~~~v~~~~~~g~~~~~---~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~ 204 (232)
..++++++.+++..+..-+ ...+.+++.++..||-|..+.-.+ .|-+ ...++.||+=||-.+..
T Consensus 26 ~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHL-------PGmv----Aa~T~lPViGVPv~s~~ 92 (162)
T COG0041 26 EEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHL-------PGMV----AAKTPLPVIGVPVQSKA 92 (162)
T ss_pred HHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhc-------chhh----hhcCCCCeEeccCcccc
Confidence 3349999999988766444 445556788889999998774443 3433 44578999999986443
No 39
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=88.16 E-value=10 Score=29.33 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGF 169 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~ 169 (232)
+..|...+++.++|+|++|....
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCccc
Confidence 57788888888999999998765
No 40
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=88.06 E-value=4.9 Score=30.75 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=42.4
Q ss_pred hhCCcceEEEEeeCCchHHHHHHH---HHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 130 KEAGFPYKIHIVKDHDMRERLCLE---IERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 130 ~~~~~~v~~~~~~g~~~~~~I~~~---a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
..++++++.++.--+..-+.+.++ +++.+++.+|.+......+.. -+...+..||+-||....
T Consensus 22 ~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpg-----------vva~~t~~PVIgvP~~~~ 87 (156)
T TIGR01162 22 EEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPG-----------MVAALTPLPVIGVPVPSK 87 (156)
T ss_pred HHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHH-----------HHHhccCCCEEEecCCcc
Confidence 344888888888776644545555 455788888888765433322 255678999999997543
No 41
>PRK05920 aromatic acid decarboxylase; Validated
Probab=87.13 E-value=2.3 Score=34.12 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=29.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v 77 (232)
+.++|++++.+|-.+.++++..-.|.+ .|.+|+++-.
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~-~g~~V~vi~T 38 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLA-ADYEVHLVIS 38 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEEC
Confidence 468999999999999999887777765 4777666553
No 42
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=86.62 E-value=12 Score=31.42 Aligned_cols=38 Identities=29% Similarity=0.093 Sum_probs=33.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
..+|+|++.|-.+|..++.....+... .++.++||-..
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~ 58 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHG 58 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCC
Confidence 379999999999999999988887776 88999999865
No 43
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=86.57 E-value=2.9 Score=33.61 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=33.8
Q ss_pred HHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc--CCCcEEEEcC
Q 026810 152 LEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH--CVCPVVVVRY 200 (232)
Q Consensus 152 ~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~--~~~PVliVp~ 200 (232)
+.+++ +|++|+..-..+.+.++..|+-.+....++.. ..+||+++|.
T Consensus 92 ~La~w--AD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPa 140 (209)
T PLN02496 92 ELRRW--ADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPA 140 (209)
T ss_pred Hhhhh--hCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeC
Confidence 45555 89999999988888888444444444444454 3799999996
No 44
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=85.96 E-value=18 Score=29.87 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=30.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCC--CCEEEEEEEec
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRP--GDAVILVHVSP 79 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~--~~~l~ll~v~~ 79 (232)
..+|+|++.|-.+|...+..+..+.... +-+|..+|+-.
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~ 69 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQ 69 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecC
Confidence 5799999999999999888887766543 34788888754
No 45
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=85.73 E-value=3.4 Score=31.42 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=37.4
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHh---cCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIER---LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~---~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
.+|++++.++...+..-+.+.+++++ .+++.+|.+......+ ..-+.-.+.+||+-||....
T Consensus 25 ~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~L-----------pgvva~~t~~PVIgvP~~~~ 89 (150)
T PF00731_consen 25 EFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAAL-----------PGVVASLTTLPVIGVPVSSG 89 (150)
T ss_dssp HTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--H-----------HHHHHHHSSS-EEEEEE-ST
T ss_pred HcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccc-----------hhhheeccCCCEEEeecCcc
Confidence 34888888888876656666666655 4578777776653333 22255667999999997544
No 46
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.53 E-value=13 Score=33.56 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=62.5
Q ss_pred cEEEEEe--cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAV--DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 42 ~~ILv~v--D~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
..||+=+ |.--....||..|++.|...+.+|..+++.++.... . ......++.
T Consensus 23 ~~vL~WFRrDLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~------------------~-------~~~r~~Fl~ 77 (454)
T TIGR00591 23 GVVVYWMSRDQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLA------------------A-------TRRHYFFML 77 (454)
T ss_pred CeEEEEecCchhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCccc------------------c-------cHHHHHHHH
Confidence 3344444 555667778888888776667789999998653210 0 112223333
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeC
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~ 167 (232)
+.+..+.+.+...|+.+. +..|+ +.+.|...+++.+++.|+.-..
T Consensus 78 esL~~L~~~L~~~g~~L~--v~~g~-~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 78 GGLDEVANECERLIIPFH--LLDGP-PKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHHHHHHHHHHHcCCceE--EeecC-hHHHHHHHHHHcCCCEEEEecc
Confidence 444445555555566654 44666 4999999999999999998764
No 47
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=81.10 E-value=25 Score=28.97 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=29.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
..++++|++.|--+|..++..+.+. +.++..+|+..
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~ 46 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVS 46 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecC
Confidence 3578999999999999988877664 66788888853
No 48
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=80.64 E-value=25 Score=27.51 Aligned_cols=47 Identities=6% Similarity=0.002 Sum_probs=33.5
Q ss_pred CCCEEEEeeCCCCcccccCCCccCchhHHH---hccCCCcEEEEcCCCCC
Q 026810 158 SLSAVIMGSRGFGAEKRGSDGKLGSVSDYC---VHHCVCPVVVVRYPDDK 204 (232)
Q Consensus 158 ~~dlIV~G~~~~~~~~~~~~~~~gs~~~~v---l~~~~~PVliVp~~~~~ 204 (232)
.+|++|+..-..+.+.++.+|+-.+....+ +...++||+++|...+.
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~m~~ 124 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRETPL 124 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 489999999888888887554544444442 34578999999975543
No 49
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=79.93 E-value=8 Score=29.47 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhCC
Q 026810 54 SAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAG 133 (232)
Q Consensus 54 s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (232)
...||..| ...+.+|..++++++.. .... . ....... ++.+.+..+...+...|
T Consensus 13 DN~aL~~A----~~~~~~v~~vfv~d~~~-~~~~--~-----------~~~~r~~--------Fl~~sL~~L~~~L~~~g 66 (165)
T PF00875_consen 13 DNPALHAA----AQNGDPVLPVFVFDPEE-FHPY--R-----------IGPRRRR--------FLLESLADLQESLRKLG 66 (165)
T ss_dssp T-HHHHHH----HHTTSEEEEEEEE-HHG-GTTC--S-----------SCHHHHH--------HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHH----HHcCCCeEEEEEecccc-cccc--c-----------CcchHHH--------HHHHHHHHHHHHHHhcC
Confidence 33455555 44678899999997541 0000 0 0111122 23333344444454445
Q ss_pred cceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 134 FPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 134 ~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
+ ...+..|+ +.+.|...+++.+++.|+.... .+....- ......+.+...++.+..+...
T Consensus 67 ~--~L~v~~g~-~~~~l~~l~~~~~~~~V~~~~~-~~~~~~~----rd~~v~~~l~~~~i~~~~~~~~ 126 (165)
T PF00875_consen 67 I--PLLVLRGD-PEEVLPELAKEYGATAVYFNEE-YTPYERR----RDERVRKALKKHGIKVHTFDDH 126 (165)
T ss_dssp S---EEEEESS-HHHHHHHHHHHHTESEEEEE----SHHHHH----HHHHHHHHHHHTTSEEEEE--S
T ss_pred c--ceEEEecc-hHHHHHHHHHhcCcCeeEeccc-cCHHHHH----HHHHHHHHHHhcceEEEEECCc
Confidence 4 45666676 5999999999999999998754 3332221 1223334555567888877653
No 50
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=79.38 E-value=34 Score=28.22 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=65.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe-cCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS-PTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
....=|++-+.......++.++++|+..+..| ..|.. ++...++.....++ .++.+..+..++.
T Consensus 27 I~saNIACG~HAGDp~~M~~tv~lA~~~gV~i-GAHPsyPD~~gFGRr~m~~s----------~~el~~~v~yQig---- 91 (242)
T PF03746_consen 27 ISSANIACGFHAGDPETMRRTVRLAKEHGVAI-GAHPSYPDREGFGRRSMDIS----------PEELRDSVLYQIG---- 91 (242)
T ss_dssp -SEEEEE-SSSS--HHHHHHHHHHHHHTT-EE-EEE---S-TTTTT-S---------------HHHHHHHHHHHHH----
T ss_pred hhhHHHhhcccccCHHHHHHHHHHHHHcCCEe-ccCCCCCCCCCCCCCCCCCC----------HHHHHHHHHHHHH----
Confidence 46677888888889999999999999888654 34543 33333332221111 2222222222222
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeC---------CchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH 190 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g---------~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~ 190 (232)
.+...+...|.++...--+| ...++.|++.+++.+.+|.++|.. ||...+..+.
T Consensus 92 ----aL~~~a~~~g~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~a-------------gs~~~~~A~~ 154 (242)
T PF03746_consen 92 ----ALQAIAAAEGVPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLA-------------GSELEKAAKE 154 (242)
T ss_dssp ----HHHHHHHHTT--EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEET-------------TSHHHHHHHH
T ss_pred ----HHHHHHHHcCCeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcC-------------CcHHHHHHHH
Confidence 22233344477877776665 226889999999999999999965 3566666776
Q ss_pred CCCcEEE
Q 026810 191 CVCPVVV 197 (232)
Q Consensus 191 ~~~PVli 197 (232)
...+++.
T Consensus 155 ~Gl~~~~ 161 (242)
T PF03746_consen 155 LGLPVVF 161 (242)
T ss_dssp CT--EEE
T ss_pred CCCcEEE
Confidence 7777664
No 51
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=78.55 E-value=41 Score=28.69 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=32.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
+.++++++.+-.+|.-.+..|.+.....+.++.++|+-..
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG 66 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTG 66 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCC
Confidence 5789999999999999999887765544567889998754
No 52
>PRK13820 argininosuccinate synthase; Provisional
Probab=77.96 E-value=47 Score=29.53 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=29.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCC-EEEEEEEec
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGD-AVILVHVSP 79 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~-~l~ll~v~~ 79 (232)
+++|+|++.+-.+|..++.++.. ..+. +++.+|+..
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e---~~g~~~Viav~vd~ 38 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE---KYGYDEVITVTVDV 38 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH---hcCCCEEEEEEEEC
Confidence 58999999999999999988754 2464 899999974
No 53
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=77.38 E-value=16 Score=28.45 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=30.0
Q ss_pred CCEEEEeeCCCCcccccCCCccCchhHHHhc---cCCCcEEEEcC
Q 026810 159 LSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH---HCVCPVVVVRY 200 (232)
Q Consensus 159 ~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~---~~~~PVliVp~ 200 (232)
+|++|+..-..+.+.++..|+-.+....++. ...+|++++|.
T Consensus 79 ~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P~ 123 (174)
T TIGR02699 79 YDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMPS 123 (174)
T ss_pred cCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEEC
Confidence 7999999888888888744444444333333 46899999997
No 54
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=77.06 E-value=25 Score=27.98 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=28.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~ 78 (232)
..-.++.-.++.+..++..+..+++..+.++.++.+.
T Consensus 25 ~~~~~~~vi~e~~~~~l~ea~~la~~~g~~v~av~~G 61 (202)
T cd01714 25 DREGVPLIINPYDEYAVEEALRLKEKYGGEVTVVSMG 61 (202)
T ss_pred EcCCCCccCChHhHHHHHHHHHhhhhcCCEEEEEEEC
Confidence 3344566677888899999999988888887776664
No 55
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=76.88 E-value=15 Score=33.44 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 026810 52 DESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKE 131 (232)
Q Consensus 52 ~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (232)
-....||.+|++ .+.+|..++++.+....... .. .....++-+.+..+.+.+..
T Consensus 13 l~DN~AL~~A~~----~~~~vl~vfi~dp~~~~~~~---------------~~-------~~r~~Fl~esL~~L~~~L~~ 66 (471)
T TIGR03556 13 LSDNIGLAAARQ----QSAKVVGLFCLDPNILQADD---------------MA-------PARVAYLIGCLQELQQRYQQ 66 (471)
T ss_pred cchHHHHHHHHh----cCCCEEEEEEEchhhhcccc---------------CC-------HHHHHHHHHHHHHHHHHHHH
Confidence 345566766664 35579999998652110000 00 01113344444455555555
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~ 167 (232)
.|+++ .+..|. +.+.|.+.+++.+++.|+.-..
T Consensus 67 ~G~~L--~v~~G~-p~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 67 AGSQL--LILQGD-PVQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred CCCCe--EEEECC-HHHHHHHHHHHcCCCEEEEecc
Confidence 56665 445666 4899999999999999997654
No 56
>PRK11914 diacylglycerol kinase; Reviewed
Probab=76.77 E-value=6.9 Score=33.18 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=43.1
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCCCCCCc
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEP 209 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~~~~~~ 209 (232)
++.+.........-+..+++.+.+.++|+||+. .|-|++... ...+ ...+.|+-++|.+..++..+.
T Consensus 39 g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~-GGDGTi~ev--------v~~l-~~~~~~lgiiP~GT~NdfAr~ 105 (306)
T PRK11914 39 GVDVVEIVGTDAHDARHLVAAALAKGTDALVVV-GGDGVISNA--------LQVL-AGTDIPLGIIPAGTGNDHARE 105 (306)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEE-CCchHHHHH--------hHHh-ccCCCcEEEEeCCCcchhHHH
Confidence 666665555442237777777777888987766 445655544 2222 245789999999888776543
No 57
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=72.80 E-value=62 Score=29.06 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=68.6
Q ss_pred cEEEEEec-CChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAVD-LSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (232)
Q Consensus 42 ~~ILv~vD-~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (232)
.-||+.=| +--.|.-.++.+.++|.+. .+|+|.-... ..+++-
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEES------------------------~~Qikl-------- 137 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEES------------------------LQQIKL-------- 137 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCcC------------------------HHHHHH--------
Confidence 44666655 3346888899999999866 6777763211 111110
Q ss_pred HHHHhhhhhhhCCcce-EEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhH---------HHhcc
Q 026810 121 KAADLARPLKEAGFPY-KIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSD---------YCVHH 190 (232)
Q Consensus 121 ~~~~~~~~~~~~~~~v-~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~---------~vl~~ 190 (232)
+..+.+++. ...+..-.. .+.|+...++.++|++|+-+-+.-.... ++...||+++ ++...
T Consensus 138 -------RA~RL~~~~~~l~l~aEt~-~e~I~~~l~~~~p~lvVIDSIQT~~s~~-~~SapGsVsQVRe~t~~L~~~AK~ 208 (456)
T COG1066 138 -------RADRLGLPTNNLYLLAETN-LEDIIAELEQEKPDLVVIDSIQTLYSEE-ITSAPGSVSQVREVAAELMRLAKT 208 (456)
T ss_pred -------HHHHhCCCccceEEehhcC-HHHHHHHHHhcCCCEEEEeccceeeccc-ccCCCCcHHHHHHHHHHHHHHHHH
Confidence 111124332 233333334 8889999999999999999865322222 2224576665 44556
Q ss_pred CCCcEEEEcC
Q 026810 191 CVCPVVVVRY 200 (232)
Q Consensus 191 ~~~PVliVp~ 200 (232)
.++++++|-+
T Consensus 209 ~~i~~fiVGH 218 (456)
T COG1066 209 KNIAIFIVGH 218 (456)
T ss_pred cCCeEEEEEE
Confidence 6799999976
No 58
>PRK05406 LamB/YcsF family protein; Provisional
Probab=72.35 E-value=40 Score=27.89 Aligned_cols=122 Identities=15% Similarity=0.075 Sum_probs=72.5
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe-cCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHH
Q 026810 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS-PTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (232)
Q Consensus 44 ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (232)
.=+++-+.......++..+++|+..+..|- -|.. ++...++.....+. .++....+.-++..
T Consensus 32 ANIACG~HAGDp~~M~~tv~lA~~~gV~IG-AHPgypD~~gFGRR~m~~s----------~~el~~~v~yQigA------ 94 (246)
T PRK05406 32 ANIACGFHAGDPAVMRRTVRLAKENGVAIG-AHPGYPDLEGFGRRNMDLS----------PEELYALVLYQIGA------ 94 (246)
T ss_pred HHHhccccCCCHHHHHHHHHHHHHcCCeEc-cCCCCCccCCCCCCCCCCC----------HHHHHHHHHHHHHH------
Confidence 345666777778888899999998876543 3433 33333333222221 22333333322221
Q ss_pred HHhhhhhhhCCcceEEEEeeC---------CchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCC
Q 026810 123 ADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVC 193 (232)
Q Consensus 123 ~~~~~~~~~~~~~v~~~~~~g---------~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~ 193 (232)
+...+...|.++.+.--+| ...++.|++.++..+.+|++++.. |+...++.+....
T Consensus 95 --L~~~a~~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~-------------~s~~~~~A~~~Gl 159 (246)
T PRK05406 95 --LQAIARAAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLA-------------GSELIRAAEEAGL 159 (246)
T ss_pred --HHHHHHHcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecC-------------ChHHHHHHHHcCC
Confidence 2223334477777776665 236889999999999999999854 4556666777777
Q ss_pred cEEE
Q 026810 194 PVVV 197 (232)
Q Consensus 194 PVli 197 (232)
|++.
T Consensus 160 ~~~~ 163 (246)
T PRK05406 160 RTAS 163 (246)
T ss_pred cEEE
Confidence 7764
No 59
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=72.20 E-value=42 Score=26.56 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=62.3
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 026810 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAA 123 (232)
Q Consensus 44 ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (232)
++|+--|+-..-.+...|.++..+ +.++.++..-..+. .+.+.++.
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~----------------------ga~eQL~~----------- 50 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRI----------------------GAVEQLKT----------- 50 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSST----------------------HHHHHHHH-----------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCc----------------------cHHHHHHH-----------
Confidence 566667888888889999998887 88888888643221 11222222
Q ss_pred HhhhhhhhCCcceEEEEeeCCchHHH---HHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc-CCCcEEEEc
Q 026810 124 DLARPLKEAGFPYKIHIVKDHDMRER---LCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVR 199 (232)
Q Consensus 124 ~~~~~~~~~~~~v~~~~~~g~~~~~~---I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~-~~~PVliVp 199 (232)
+.+.+ ++++...... .++.+. .++..+..++|+|++-+.|++..... .+.... +++.. .+.-+++|-
T Consensus 51 -~a~~l---~vp~~~~~~~-~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~---~~~el~-~~~~~~~~~~~~LVl 121 (196)
T PF00448_consen 51 -YAEIL---GVPFYVARTE-SDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEE---LLEELK-KLLEALNPDEVHLVL 121 (196)
T ss_dssp -HHHHH---TEEEEESSTT-SCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHH---HHHHHH-HHHHHHSSSEEEEEE
T ss_pred -HHHHh---ccccchhhcc-hhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHH---HHHHHH-HHhhhcCCccceEEE
Confidence 11111 4443332222 233443 34555667899999999998876544 333232 34444 355555553
No 60
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=71.64 E-value=3.9 Score=28.83 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=20.5
Q ss_pred eCCchHHHHHHHHHhcCCCEEEEeeC
Q 026810 142 KDHDMRERLCLEIERLSLSAVIMGSR 167 (232)
Q Consensus 142 ~g~~~~~~I~~~a~~~~~dlIV~G~~ 167 (232)
.-.+ .+.|+++|+++++||+|+|.-
T Consensus 47 ~~~d-~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 47 DITD-PEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp -TT--HHHHHHHHHHTTESEEEESSH
T ss_pred CCCC-HHHHHHHHHHcCCCEEEECCh
Confidence 3344 889999999999999999974
No 61
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=71.48 E-value=15 Score=31.22 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=49.0
Q ss_pred hhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCCCCC
Q 026810 128 PLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDG 207 (232)
Q Consensus 128 ~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~~~~ 207 (232)
.+...+..++.+......-+..+++.+...++|.||.+.. -|.+ ..++.-+..+-..|+-++|-++.++..
T Consensus 28 ~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GG-DGTv--------~evingl~~~~~~~LgilP~GT~NdfA 98 (301)
T COG1597 28 LLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGG-DGTV--------NEVANGLAGTDDPPLGILPGGTANDFA 98 (301)
T ss_pred HHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecC-cchH--------HHHHHHHhcCCCCceEEecCCchHHHH
Confidence 3444578888888877623888888888889999999854 3433 344554444444448899988777654
Q ss_pred C
Q 026810 208 E 208 (232)
Q Consensus 208 ~ 208 (232)
+
T Consensus 99 r 99 (301)
T COG1597 99 R 99 (301)
T ss_pred H
Confidence 3
No 62
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=71.46 E-value=13 Score=32.91 Aligned_cols=120 Identities=14% Similarity=0.093 Sum_probs=69.6
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
..++|+++|.+|-.+.++++.+..+ .+.|+++.++-.-...... .+. .++.
T Consensus 3 ~~k~ill~v~gsiaayk~~~l~r~L-~~~ga~v~vvmt~~a~~fv----~p~-----------------~~~~------- 53 (392)
T COG0452 3 EGKRILLGVTGSIAAYKSVELVRLL-RRSGAEVRVVMTESARKFI----TPL-----------------TFQA------- 53 (392)
T ss_pred CCceEEEEecCchhhhhHHHHHHHH-hhCCCeeEEEcchhhhhhc----Ccc-----------------cHHH-------
Confidence 3469999999999999998876664 5589988877665332111 000 0000
Q ss_pred HHHHHhhhhhhhCCcceE-EEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 120 TKAADLARPLKEAGFPYK-IHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~-~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
+.+ ..-+. +....... .+. ++.++ .+|++++.......+.++..|+....+...+..+.+|++++
T Consensus 54 ---------~s~-~~v~t~~~~~~~~~-~~H-I~l~~--~adl~lvaPaTan~i~Kla~g~aD~~~t~~~~a~~~p~~~a 119 (392)
T COG0452 54 ---------LSG-NPVYTLLDEELTGS-VEH-IELAR--WADLLLVAPATANTIAKLAVGIADNLSTTTLLAAKAPLVLA 119 (392)
T ss_pred ---------hhC-CCcccccccccccc-ccH-hhhhh--ccCEEEecCCChhHHHHHHHhhhccHHHHHHHHhcCcEEEe
Confidence 000 11111 00011111 111 23444 49999999888888877644454555555666777899999
Q ss_pred cCCC
Q 026810 199 RYPD 202 (232)
Q Consensus 199 p~~~ 202 (232)
|.-.
T Consensus 120 Pamn 123 (392)
T COG0452 120 PAMN 123 (392)
T ss_pred cCcC
Confidence 8733
No 63
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=71.06 E-value=14 Score=31.58 Aligned_cols=62 Identities=8% Similarity=-0.003 Sum_probs=33.6
Q ss_pred eEEEEeeCCchHHHHHHHHHhc-------CCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEc
Q 026810 136 YKIHIVKDHDMRERLCLEIERL-------SLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 136 v~~~~~~g~~~~~~I~~~a~~~-------~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp 199 (232)
+-...+.|......|++..+.. ++|+||+++.|.+ ...+ .-|-.-.....+..+++||+.-=
T Consensus 46 ~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs-~eDL-~~FN~e~varai~~~~~PvisaI 114 (319)
T PF02601_consen 46 LYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS-IEDL-WAFNDEEVARAIAASPIPVISAI 114 (319)
T ss_pred EEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC-hHHh-cccChHHHHHHHHhCCCCEEEec
Confidence 3344455655455555444333 4899999977644 3332 00222233344556889987653
No 64
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=69.56 E-value=78 Score=27.78 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=29.8
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
.-.++|+++.|--+|.-|+-++.+ .|.+++.+|+..
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~ 206 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFN 206 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeC
Confidence 468999999999999988876655 478999999973
No 65
>PRK13337 putative lipid kinase; Reviewed
Probab=68.82 E-value=14 Score=31.34 Aligned_cols=68 Identities=12% Similarity=0.035 Sum_probs=41.6
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc-CCCcEEEEcCCCCCCCCC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVRYPDDKDDGE 208 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~-~~~PVliVp~~~~~~~~~ 208 (232)
.+..++.+......-+..+.+.+.+.++|+||+. .|-|.+... ...++.. ...|+-++|.+..++..+
T Consensus 31 ~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~-GGDGTl~~v--------v~gl~~~~~~~~lgiiP~GT~NdfAr 99 (304)
T PRK13337 31 AGYETSAHATTGPGDATLAAERAVERKFDLVIAA-GGDGTLNEV--------VNGIAEKENRPKLGIIPVGTTNDFAR 99 (304)
T ss_pred cCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-cCCCHHHHH--------HHHHhhCCCCCcEEEECCcCHhHHHH
Confidence 3677766665533336777776667778877765 344555443 3333322 357899999888776543
No 66
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=68.78 E-value=44 Score=30.05 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=32.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHh-CCCCCEEEEEEEecC
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHY-LRPGDAVILVHVSPT 80 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la-~~~~~~l~ll~v~~~ 80 (232)
..+|+|++.|-.+|...+.....+. ...+.+++++||-..
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhg 55 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHG 55 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCC
Confidence 4889999999999998888777665 335779999999754
No 67
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=65.38 E-value=38 Score=30.21 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeC
Q 026810 118 TATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (232)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~ 167 (232)
+.+.+..+.+.+...|++.. +..|. +.+.|.+.+++.+++.|+.-..
T Consensus 59 l~esL~~L~~~L~~~g~~L~--v~~G~-~~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 59 LLESLKDLRTSLRKLGSDLL--VRSGK-PEDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred HHHHHHHHHHHHHHcCCCeE--EEeCC-HHHHHHHHHHHhCCCEEEEecc
Confidence 33444445555555566654 44665 4889999999999999998743
No 68
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.88 E-value=95 Score=26.99 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=60.0
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHH
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (232)
+--++|+|.++-..-..-..|-.+- ..|-.+.+.-.-. ++...-.+++.
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~-~~g~~VllaA~DT------------------------------FRAaAiEQL~~ 188 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLK-QQGKSVLLAAGDT------------------------------FRAAAIEQLEV 188 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHH-HCCCeEEEEecch------------------------------HHHHHHHHHHH
Confidence 3456678888877777766666544 4666666554321 22222233333
Q ss_pred HHHHhhhhhhhCCcceEEEEeeCCchHHH---HHHHHHhcCCCEEEEeeCCCCccccc
Q 026810 121 KAADLARPLKEAGFPYKIHIVKDHDMRER---LCLEIERLSLSAVIMGSRGFGAEKRG 175 (232)
Q Consensus 121 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~---I~~~a~~~~~dlIV~G~~~~~~~~~~ 175 (232)
|.+++ |+++.... .|.+|+.. -+..|+..++|.|++-+-||-.-+..
T Consensus 189 w~er~-------gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~n 238 (340)
T COG0552 189 WGERL-------GVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKN 238 (340)
T ss_pred HHHHh-------CCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchh
Confidence 33332 77766654 67776654 35677899999999999988766655
No 69
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=64.79 E-value=15 Score=26.32 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC-CCcEEEEcC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRY 200 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~-~~PVliVp~ 200 (232)
++......+++.++..||+-+.+ |.++..+.++- +|||+++=+
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~s------------G~ta~~isk~RP~~pIiavt~ 47 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTES------------GRTARLISKYRPKVPIIAVTP 47 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-SS------------SHHHHHHHHT-TSSEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCC------------chHHHHHHhhCCCCeEEEEcC
Confidence 46677888889999999988764 66788888874 499998854
No 70
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=64.40 E-value=12 Score=27.95 Aligned_cols=55 Identities=15% Similarity=0.045 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCcc----cccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGAE----KRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~~----~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
....|...+++++++.||+|..-...- ... ..-..++++-...++||..+.+...
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~---~v~~f~~~L~~~~~~~v~~~DEr~T 100 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTE---RARKFANRLEGRFGLPVVLVDERLS 100 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHH---HHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 378899999999999999995432110 011 2234566666667899999987544
No 71
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=64.27 E-value=70 Score=25.27 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=26.1
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
++++++.+-.+|..++.++.+ .|-++..+++..
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~~v~~l~~~~ 33 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGHEVVALLNLT 33 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCEEEEEEEEe
Confidence 478899999999999888887 366777777654
No 72
>PRK12569 hypothetical protein; Provisional
Probab=62.38 E-value=83 Score=26.04 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=71.8
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe-cCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHH
Q 026810 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS-PTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (232)
Q Consensus 44 ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (232)
.=|++-+.......++..+++|+..+..|- -|.. ++...++.....++ .++.++.+..++..
T Consensus 35 aNIACG~HAGDp~~M~~tv~lA~~~~V~IG-AHPsyPD~~gFGRr~m~~s----------~~el~~~v~yQiga------ 97 (245)
T PRK12569 35 ANIATGFHAGDPNIMRRTVELAKAHGVGIG-AHPGFRDLVGFGRRHINAS----------PQELVNDVLYQLGA------ 97 (245)
T ss_pred HHHhccccCCCHHHHHHHHHHHHHcCCEec-cCCCCCcCCCCCCCCCCCC----------HHHHHHHHHHHHHH------
Confidence 335666777778888999999998877653 3433 33333333222222 23333333332221
Q ss_pred HHhhhhhhhCCcceEEEEeeC---------CchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCC
Q 026810 123 ADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVC 193 (232)
Q Consensus 123 ~~~~~~~~~~~~~v~~~~~~g---------~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~ 193 (232)
+...+...|.++...--+| ...++.|++.+++.+.+|++++.. ||...++.+....
T Consensus 98 --L~~~~~~~g~~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~-------------~s~~~~~A~~~Gl 162 (245)
T PRK12569 98 --LREFARAHGVRLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMD-------------GSATERAARELGQ 162 (245)
T ss_pred --HHHHHHHcCCeeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecC-------------CcHHHHHHHHcCC
Confidence 2222333477777666554 226889999999999999998854 3455556666666
Q ss_pred cEEE
Q 026810 194 PVVV 197 (232)
Q Consensus 194 PVli 197 (232)
+++.
T Consensus 163 ~~~~ 166 (245)
T PRK12569 163 PVVR 166 (245)
T ss_pred CeEE
Confidence 6654
No 73
>PRK13054 lipid kinase; Reviewed
Probab=62.34 E-value=30 Score=29.23 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=43.5
Q ss_pred CCcceEEEEeeC-CchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc---CCCcEEEEcCCCCCCCC
Q 026810 132 AGFPYKIHIVKD-HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRYPDDKDDG 207 (232)
Q Consensus 132 ~~~~v~~~~~~g-~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~---~~~PVliVp~~~~~~~~ 207 (232)
.++.+++..... +. +..+++.+...++|.||+.. |-+.+.+ +...++.. ..+|+-++|.+..++..
T Consensus 30 ~g~~~~v~~t~~~~~-a~~~a~~~~~~~~d~vvv~G-GDGTl~e--------vv~~l~~~~~~~~~~lgiiP~GTgNdfa 99 (300)
T PRK13054 30 EGHTLHVRVTWEKGD-AARYVEEALALGVATVIAGG-GDGTINE--------VATALAQLEGDARPALGILPLGTANDFA 99 (300)
T ss_pred cCCEEEEEEecCCCc-HHHHHHHHHHcCCCEEEEEC-CccHHHH--------HHHHHHhhccCCCCcEEEEeCCcHhHHH
Confidence 366666655543 44 66777777667788877663 4455544 33444432 35899999998887764
Q ss_pred Cce
Q 026810 208 EPL 210 (232)
Q Consensus 208 ~~~ 210 (232)
+.+
T Consensus 100 r~l 102 (300)
T PRK13054 100 TAA 102 (300)
T ss_pred Hhc
Confidence 443
No 74
>PLN00200 argininosuccinate synthase; Provisional
Probab=62.16 E-value=1.2e+02 Score=27.16 Aligned_cols=37 Identities=14% Similarity=0.199 Sum_probs=30.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
|.++|+|++.+--+|..++.++... .+.+|+.+|+-.
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e~---~G~eViav~id~ 40 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLREN---YGCEVVCFTADV 40 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHh---hCCeEEEEEEEC
Confidence 3589999999999999999888662 467899999864
No 75
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=61.97 E-value=50 Score=30.95 Aligned_cols=62 Identities=23% Similarity=0.316 Sum_probs=41.6
Q ss_pred hhCCcceEEEEeeCCchHH---HHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 130 KEAGFPYKIHIVKDHDMRE---RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 130 ~~~~~~v~~~~~~g~~~~~---~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
...|+++++.+.--+..-+ .+++.+++.+++.+|.+......+.+ -+..++.+||+=||...
T Consensus 434 ~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~-----------~~a~~t~~pvi~vp~~~ 498 (577)
T PLN02948 434 DSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPG-----------MVASMTPLPVIGVPVKT 498 (577)
T ss_pred HHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchH-----------HHhhccCCCEEEcCCCC
Confidence 3448888888877655433 34455567789988888765433322 25567799999999854
No 76
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=61.91 E-value=26 Score=25.83 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=37.5
Q ss_pred chHHHHHHHHHhcCCCEEEEeeCCC-----CcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 145 DMRERLCLEIERLSLSAVIMGSRGF-----GAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 145 ~~~~~I~~~a~~~~~dlIV~G~~~~-----~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
.....|.+.+++++++.||+|..-. +.... ..-..++++-...++||..+.....
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~----~v~~f~~~L~~~~~~~v~~~DEr~T 94 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTE----RAQKFANRLEGRFGVPVVLWDERLS 94 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHH----HHHHHHHHHHHHhCCCEEEEcCCcC
Confidence 3478899999999999999995432 11111 1224566666667899999976443
No 77
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=60.93 E-value=1e+02 Score=26.18 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=31.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
+.+.++++.+-..|.-++..+.+.....+.++.++|+-..
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG 58 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTG 58 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecC
Confidence 4456788999999999998888776544567899999754
No 78
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=60.52 E-value=9.6 Score=27.77 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=37.1
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCC-CEEEEeeCCCCcccccCCCccCchhHHHhccC---CCcEEEEcCCCCCC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSL-SAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC---VCPVVVVRYPDDKD 205 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~-dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~---~~PVliVp~~~~~~ 205 (232)
+..+++.........+.+....+..+. |.||+... -+.+.. +...++... .+|+-++|.+..++
T Consensus 28 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GG-DGTl~~--------vv~~l~~~~~~~~~~l~iiP~GT~N~ 95 (130)
T PF00781_consen 28 GIDYEVIETESAGHAEALARILALDDYPDVIVVVGG-DGTLNE--------VVNGLMGSDREDKPPLGIIPAGTGND 95 (130)
T ss_dssp TCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEES-HHHHHH--------HHHHHCTSTSSS--EEEEEE-SSS-H
T ss_pred CCceEEEEEeccchHHHHHHHHhhccCccEEEEEcC-ccHHHH--------HHHHHhhcCCCccceEEEecCCChhH
Confidence 566777777766668888775555555 67776643 344333 333333332 35999999876654
No 79
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=60.29 E-value=75 Score=24.31 Aligned_cols=34 Identities=18% Similarity=0.064 Sum_probs=28.2
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
+++|++.|-.+|..++.++.+ .|.+++.+|+-..
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d~g 34 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFNSG 34 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 589999999999998888876 3788999999754
No 80
>PRK00509 argininosuccinate synthase; Provisional
Probab=60.16 E-value=1e+02 Score=27.48 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=29.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
..+|+|++.+--+|..++.++.+. .|.+++.+++..
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~---lG~eViavt~d~ 37 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKET---YGCEVIAFTADV 37 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHh---hCCeEEEEEEec
Confidence 468999999999999998887763 377899999864
No 81
>PRK13055 putative lipid kinase; Reviewed
Probab=59.44 E-value=30 Score=29.77 Aligned_cols=69 Identities=9% Similarity=0.060 Sum_probs=42.6
Q ss_pred hhCCcceEEEEeeC--CchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc-CCCcEEEEcCCCCCCC
Q 026810 130 KEAGFPYKIHIVKD--HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVRYPDDKDD 206 (232)
Q Consensus 130 ~~~~~~v~~~~~~g--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~-~~~PVliVp~~~~~~~ 206 (232)
...++.+++..... +. +..+++.+.+.++|+||+. .|-|++.+. ...++.. ...|+-++|.+..++.
T Consensus 30 ~~~g~~~~i~~t~~~~~~-a~~~~~~~~~~~~d~vvv~-GGDGTl~ev--------vngl~~~~~~~~LgiiP~GTgNdf 99 (334)
T PRK13055 30 EQAGYETSAFQTTPEPNS-AKNEAKRAAEAGFDLIIAA-GGDGTINEV--------VNGIAPLEKRPKMAIIPAGTTNDY 99 (334)
T ss_pred HHcCCeEEEEEeecCCcc-HHHHHHHHhhcCCCEEEEE-CCCCHHHHH--------HHHHhhcCCCCcEEEECCCchhHH
Confidence 33467777655542 34 6667777777788988766 344555443 3333332 3578999998877765
Q ss_pred CC
Q 026810 207 GE 208 (232)
Q Consensus 207 ~~ 208 (232)
.+
T Consensus 100 Ar 101 (334)
T PRK13055 100 AR 101 (334)
T ss_pred HH
Confidence 44
No 82
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=59.31 E-value=56 Score=27.17 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
...+.+.+++.++|.|++..........- -+-..-..|+..+++||++...+.
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~---~~~~~~~~ia~~~~~pi~iYn~P~ 133 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQE---GIVAHFKAVADASDLPVILYNIPG 133 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHH---HHHHHHHHHHhcCCCCEEEEECcc
Confidence 44566788999999999987654332221 222344567777899999997754
No 83
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=59.29 E-value=32 Score=30.86 Aligned_cols=65 Identities=12% Similarity=0.064 Sum_probs=35.6
Q ss_pred EEEeeCCchHHHHHHHHHhcC---CCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC
Q 026810 138 IHIVKDHDMRERLCLEIERLS---LSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204 (232)
Q Consensus 138 ~~~~~g~~~~~~I~~~a~~~~---~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~ 204 (232)
...+.|......|++..+..+ +|.||+|+.|.+ ...+ .-|-.-.....+..+++||+.-=.++..
T Consensus 169 ~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS-~eDL-~~Fn~e~v~~ai~~~~~Pvis~IGHE~D 236 (438)
T PRK00286 169 PTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS-LEDL-WAFNDEAVARAIAASRIPVISAVGHETD 236 (438)
T ss_pred cCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC-HHHh-hccCcHHHHHHHHcCCCCEEEeccCCCC
Confidence 334556654555655554333 599999977654 3332 0022223334555689998876444443
No 84
>PRK10867 signal recognition particle protein; Provisional
Probab=59.04 E-value=1.3e+02 Score=27.06 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=26.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~ 78 (232)
-++++.-++-.+-.+...|..++...|-.+.++.+-
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 345556678888889999998877657778777654
No 85
>PRK13057 putative lipid kinase; Reviewed
Probab=58.38 E-value=14 Score=31.01 Aligned_cols=70 Identities=19% Similarity=0.164 Sum_probs=41.8
Q ss_pred hhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCCCCCCc
Q 026810 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEP 209 (232)
Q Consensus 130 ~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~~~~~~ 209 (232)
...++.+.........-+..+++.+ ..++|+||+. .|-|++.+ +...+. ..+.|+-++|.+..++..+.
T Consensus 23 ~~~g~~~~~~~t~~~~~a~~~~~~~-~~~~d~iiv~-GGDGTv~~--------v~~~l~-~~~~~lgiiP~GT~Ndfar~ 91 (287)
T PRK13057 23 EAAGLELVEPPAEDPDDLSEVIEAY-ADGVDLVIVG-GGDGTLNA--------AAPALV-ETGLPLGILPLGTANDLART 91 (287)
T ss_pred HHcCCeEEEEecCCHHHHHHHHHHH-HcCCCEEEEE-CchHHHHH--------HHHHHh-cCCCcEEEECCCCccHHHHH
Confidence 3346676666665332245555553 4568887766 34455443 333333 35789999999888776554
Q ss_pred e
Q 026810 210 L 210 (232)
Q Consensus 210 ~ 210 (232)
+
T Consensus 92 L 92 (287)
T PRK13057 92 L 92 (287)
T ss_pred c
Confidence 3
No 86
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=58.23 E-value=1.2e+02 Score=26.09 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=32.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
+.++++++.+-..|.-.+..|.+.+...+.++-+||+-+.
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG 76 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTT 76 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCC
Confidence 5678889999999999999988877655667889998654
No 87
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=57.82 E-value=90 Score=24.41 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=24.2
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 44 ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
|+|++.|-.+|..++..+.... +.++..+|+..
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~v~~v~vd~ 33 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDRVLAVTATS 33 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCcEEEEEeCC
Confidence 5788898888888887776643 22688888863
No 88
>PRK00861 putative lipid kinase; Reviewed
Probab=57.06 E-value=24 Score=29.80 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=42.2
Q ss_pred cceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCCCCCC
Q 026810 134 FPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGE 208 (232)
Q Consensus 134 ~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~~~~~ 208 (232)
..++........-+..+.+.+...+.|+||+. .|-|++.+. ...++ ...+|+-++|.+..++..+
T Consensus 33 ~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~-GGDGTl~ev--------v~~l~-~~~~~lgviP~GTgNdfAr 97 (300)
T PRK00861 33 MDLDIYLTTPEIGADQLAQEAIERGAELIIAS-GGDGTLSAV--------AGALI-GTDIPLGIIPRGTANAFAA 97 (300)
T ss_pred CceEEEEccCCCCHHHHHHHHHhcCCCEEEEE-CChHHHHHH--------HHHHh-cCCCcEEEEcCCchhHHHH
Confidence 45666555544347788888877888987765 444555443 33343 3478999999988876544
No 89
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=56.64 E-value=31 Score=25.88 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=27.0
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF 169 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~ 169 (232)
.+.+.-.++.|.+ .+.=.+..++.++|.|++|--..
T Consensus 62 s~ryVD~vi~~~p-~~~~~~~i~~~k~Div~lG~D~~ 97 (140)
T COG0615 62 SLRYVDEVILGAP-WDIKFEDIEEYKPDIVVLGDDQK 97 (140)
T ss_pred cCcchheeeeCCc-cccChHHHHHhCCCEEEECCCCc
Confidence 4566667777765 55436888999999999998765
No 90
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=56.18 E-value=54 Score=27.60 Aligned_cols=65 Identities=8% Similarity=-0.033 Sum_probs=39.0
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
.+++-.-+..+-.-.-.+.+.+++.++|.+++-.........- -+-.--..|+..+++||+++..
T Consensus 69 ~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~---~i~~~f~~v~~~~~~pi~lYn~ 133 (289)
T cd00951 69 RVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPYLTEAPQE---GLYAHVEAVCKSTDLGVIVYNR 133 (289)
T ss_pred CCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHH---HHHHHHHHHHhcCCCCEEEEeC
Confidence 3455444432211244566888999999999977654322111 1112334577788999999974
No 91
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=54.94 E-value=76 Score=28.78 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeC
Q 026810 117 FTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (232)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~ 167 (232)
++.+.+..+...+...|.++.+.. ++++.+.|.+.+++.+++-|..-..
T Consensus 48 fl~~sL~~L~~~L~~~G~~L~v~~--~g~~~~~l~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 48 WLKQSLAHLDQSLRSLGTCLVTIR--STDTVAALLDCVRSTGATRLFFNHL 96 (475)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHHHcCCCEEEEecc
Confidence 333444445555555566655433 3345888888888888888876654
No 92
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=54.44 E-value=86 Score=23.17 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=27.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
+|+|++.+-.+|..++..+....... .++.++|+-.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dt 36 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDT 36 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCC
Confidence 47899999999998888887755533 4677888764
No 93
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=54.36 E-value=1.1e+02 Score=24.42 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=79.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (232)
.+|.|-+.++-....|+--|+. ....++++.++-.-...- ..+++
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~-~~~~~a~i~~Visd~~~A-------------------------~~ler--------- 45 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIK-GGKLDAEIVAVISDKADA-------------------------YALER--------- 45 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHh-cCCCCcEEEEEEeCCCCC-------------------------HHHHH---------
Confidence 3678888888888888777777 444566666655443211 11111
Q ss_pred HHHhhhhhhhCCcceEEEEeeCCc----hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCC---------------ccC-
Q 026810 122 AADLARPLKEAGFPYKIHIVKDHD----MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDG---------------KLG- 181 (232)
Q Consensus 122 ~~~~~~~~~~~~~~v~~~~~~g~~----~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~---------------~~g- 181 (232)
..+.+++..+......+ ....|.+..++.++|+||+...-+=....++++ |-|
T Consensus 46 -------A~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~ 118 (200)
T COG0299 46 -------AAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGL 118 (200)
T ss_pred -------HHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCCc
Confidence 12226665444444332 467888999999999999986532111111000 222
Q ss_pred chhHHHhcc----CCCcEEEEcCCCCCCCCCceEEecCCCCCCCc-hHHhhhc
Q 026810 182 SVSDYCVHH----CVCPVVVVRYPDDKDDGEPLVKVKEPEKDDED-DHVDRKL 229 (232)
Q Consensus 182 s~~~~vl~~----~~~PVliVp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 229 (232)
.+-++.+.. +.|.|..|-.+ -+.+-++.....|=.++++ +-|-+|+
T Consensus 119 h~~~~A~~aG~k~sG~TVH~V~e~--vD~GpII~Q~~Vpv~~~Dt~etl~~RV 169 (200)
T COG0299 119 HAHEQALEAGVKVSGCTVHFVTEG--VDTGPIIAQAAVPVLPGDTAETLEARV 169 (200)
T ss_pred hHHHHHHHcCCCccCcEEEEEccC--CCCCCeEEEEeeeecCCCCHHHHHHHH
Confidence 233444443 67999999743 3445666666555444333 3344443
No 94
>PRK12361 hypothetical protein; Provisional
Probab=53.68 E-value=22 Score=32.89 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=43.7
Q ss_pred cceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCCCCCCce
Q 026810 134 FPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPL 210 (232)
Q Consensus 134 ~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~~~~~~~ 210 (232)
.++++.......-+..+.+.+.+.++|+||+. .|-|++.+. ...+. ..++|+-++|.+..++..+.+
T Consensus 273 ~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~-GGDGTl~ev--------~~~l~-~~~~~lgiiP~GTgNdfAr~L 339 (547)
T PRK12361 273 FDLTVKLTTPEISAEALAKQARKAGADIVIAC-GGDGTVTEV--------ASELV-NTDITLGIIPLGTANALSHAL 339 (547)
T ss_pred CceEEEECCCCccHHHHHHHHHhcCCCEEEEE-CCCcHHHHH--------HHHHh-cCCCCEEEecCCchhHHHHHh
Confidence 55666566543337788877777788887765 445555443 33333 357899999998888765544
No 95
>PRK10481 hypothetical protein; Provisional
Probab=53.49 E-value=60 Score=26.45 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=29.9
Q ss_pred HHHHHHHHH---hcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 147 RERLCLEIE---RLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 147 ~~~I~~~a~---~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
.+.+.+.++ ..++|+||+++-+.+. .....+-+...+||+.-
T Consensus 168 ~~~l~~aa~~L~~~gaD~Ivl~C~G~~~----------~~~~~le~~lg~PVI~~ 212 (224)
T PRK10481 168 EEELIDAGKELLDQGADVIVLDCLGYHQ----------RHRDLLQKALDVPVLLS 212 (224)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCCcCH----------HHHHHHHHHHCcCEEcH
Confidence 456666666 6789999999988552 23455666788998864
No 96
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=52.91 E-value=1.1e+02 Score=27.94 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=52.3
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026810 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (232)
Q Consensus 49 D~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (232)
|.--....||..|+..+ +..|..|+|.++....... .. .....++.+.+..+...
T Consensus 11 DLRl~DN~aL~~A~~~~---~~~vlpvyv~dp~~~~~~~--------------~~--------~~r~~Fl~esL~~L~~~ 65 (472)
T PRK10674 11 DLRLHDNLALAAACRDP---SARVLALFIATPAQWAAHD--------------MA--------PRQAAFINAQLNALQIA 65 (472)
T ss_pred CCCcchHHHHHHHHhCC---CCCEEEEEEECchhhccCC--------------CC--------HHHHHHHHHHHHHHHHH
Confidence 44445566777776533 2368999998653211000 01 11112333444445555
Q ss_pred hhhCCcceEEEEe--eCCchHHHHHHHHHhcCCCEEEEee
Q 026810 129 LKEAGFPYKIHIV--KDHDMRERLCLEIERLSLSAVIMGS 166 (232)
Q Consensus 129 ~~~~~~~v~~~~~--~g~~~~~~I~~~a~~~~~dlIV~G~ 166 (232)
+...|.++.+... .|. +.+.|.+.+++.+++-|+.-.
T Consensus 66 L~~~g~~L~v~~g~~~g~-~~~vl~~l~~~~~i~~v~~~~ 104 (472)
T PRK10674 66 LAEKGIPLLFHEVDDFAA-SVEWLKQFCQQHQVTHLFYNY 104 (472)
T ss_pred HHHcCCceEEEecCCcCC-HHHHHHHHHHHcCCCEEEEec
Confidence 5555766654443 244 588899999999999888764
No 97
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=52.52 E-value=54 Score=27.56 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=43.3
Q ss_pred CCcceEEEEeeC-CchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc---CCCcEEEEcCCCCCCCC
Q 026810 132 AGFPYKIHIVKD-HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRYPDDKDDG 207 (232)
Q Consensus 132 ~~~~v~~~~~~g-~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~---~~~PVliVp~~~~~~~~ 207 (232)
.++.+++..... ++ +..+.+.+.+.+.|.||+. .|-|.+.+. ...++.+ .++|+-++|.+..++..
T Consensus 26 ~g~~~~v~~t~~~~~-a~~~a~~~~~~~~d~vv~~-GGDGTi~ev--------~ngl~~~~~~~~~~lgiiP~GTgNdfA 95 (293)
T TIGR03702 26 EGIQLHVRVTWEKGD-AQRYVAEALALGVSTVIAG-GGDGTLREV--------ATALAQIRDDAAPALGLLPLGTANDFA 95 (293)
T ss_pred CCCeEEEEEecCCCC-HHHHHHHHHHcCCCEEEEE-cCChHHHHH--------HHHHHhhCCCCCCcEEEEcCCchhHHH
Confidence 366766665543 44 7778777767778877655 445555443 3344432 34689999998887765
Q ss_pred Cce
Q 026810 208 EPL 210 (232)
Q Consensus 208 ~~~ 210 (232)
+.+
T Consensus 96 r~l 98 (293)
T TIGR03702 96 TAA 98 (293)
T ss_pred Hhc
Confidence 543
No 98
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=52.06 E-value=53 Score=27.33 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=41.5
Q ss_pred hhhCCcceEEEEeeCCchHH--HHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 129 LKEAGFPYKIHIVKDHDMRE--RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 129 ~~~~~~~v~~~~~~g~~~~~--~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
+...|+++....+.|+++.+ ..++.+.++ +|+||+. .|-|+...- -+.+.+......|+.+-
T Consensus 30 L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~t-GGLGPT~DD------iT~e~vAka~g~~lv~~ 93 (255)
T COG1058 30 LTELGVDLARITTVGDNPDRIVEALREASER-ADVVITT-GGLGPTHDD------LTAEAVAKALGRPLVLD 93 (255)
T ss_pred HHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEEC-CCcCCCccH------hHHHHHHHHhCCCcccC
Confidence 34459999999999998422 334555665 9998886 455555443 26666677777777654
No 99
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=51.85 E-value=39 Score=29.42 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=48.2
Q ss_pred CcceEEEEeeCCc--------hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 133 GFPYKIHIVKDHD--------MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 133 ~~~v~~~~~~g~~--------~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
+..+..-+..|+. ..+.|+..+++.++|++|.|.-=.-.-.+. .-|.++..|-....+|++.-=..+
T Consensus 47 ~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~---acg~v~~aV~e~~~IP~vtaM~~E 121 (349)
T PF07355_consen 47 DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGV---ACGEVAKAVQEKLGIPVVTAMYEE 121 (349)
T ss_pred CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHH---HHHHHHHHHHHhhCCCEEEEeccc
Confidence 4566666666654 567899999999999999997533333343 456777778888999999764433
No 100
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=51.46 E-value=31 Score=25.60 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=42.4
Q ss_pred ceEEEEee-CCchHHHHHHHHHhcCCCEEEEeeCCCCccccc-CCCccCchhHHHhccC-CCcEEEEcCCCC
Q 026810 135 PYKIHIVK-DHDMRERLCLEIERLSLSAVIMGSRGFGAEKRG-SDGKLGSVSDYCVHHC-VCPVVVVRYPDD 203 (232)
Q Consensus 135 ~v~~~~~~-g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~-~~~~~gs~~~~vl~~~-~~PVliVp~~~~ 203 (232)
++.+.... .....+.|.+.+++++++.||+|..-...-... .....-..++.+-... ++||..+.....
T Consensus 27 pl~~i~~~~~~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~T 98 (135)
T PF03652_consen 27 PLETIPRRNREKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLT 98 (135)
T ss_dssp EEEEEEECCCCCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCS
T ss_pred eeEEEECCCCchHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChh
Confidence 33444433 234599999999999999999998632211000 0001233455666666 899999987444
No 101
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=51.12 E-value=1.1e+02 Score=23.21 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=25.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
+|+|.+.+-.+|..++..+.. .+.++..+|+..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~----~~~~v~~~~~~~ 33 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK----EGYEVHALSFDY 33 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH----cCCcEEEEEEEC
Confidence 578999999999998877765 245788888863
No 102
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=50.87 E-value=1.5e+02 Score=25.05 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=51.3
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
...||.|-+.++.....++-.+.+- ...++++.++-.... ... +
T Consensus 92 ~~~kiavl~Sg~g~nl~al~~~~~~-~~l~~~i~~visn~~------------------------~~~----~------- 135 (289)
T PRK13010 92 QRPKVVIMVSKFDHCLNDLLYRWRM-GELDMDIVGIISNHP------------------------DLQ----P------- 135 (289)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHC-CCCCcEEEEEEECCh------------------------hHH----H-------
Confidence 3568999999998888888888663 334555554433211 011 0
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeC---CchHHHHHHHHHhcCCCEEEEeeCC
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKD---HDMRERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g---~~~~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
.+...++++.+..... ......+.+..+++++|++|+....
T Consensus 136 --------~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym 179 (289)
T PRK13010 136 --------LAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYM 179 (289)
T ss_pred --------HHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhh
Confidence 1122277765432111 1124578888999999999998653
No 103
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=50.74 E-value=1.6e+02 Score=25.21 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=28.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
++++|++.|--+|..++..+.+. .|.+++.+|+-..
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~---~G~~v~av~vd~G 52 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA---IGDRLTCVFVDHG 52 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH---hCCCEEEEEEeCC
Confidence 78999999999988877666553 3568999999753
No 104
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=50.39 E-value=57 Score=29.34 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=36.2
Q ss_pred eEEEEeeCCchHHHHHHHHH----hcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC
Q 026810 136 YKIHIVKDHDMRERLCLEIE----RLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204 (232)
Q Consensus 136 v~~~~~~g~~~~~~I~~~a~----~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~ 204 (232)
+-...+.|...+..|++..+ ..++|.||+|+.|.+ ...+ .-|-.-.....+..+++||+.-=.++..
T Consensus 161 ~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs-~eDL-~~Fn~e~~~rai~~~~~Pvis~iGHe~D 231 (432)
T TIGR00237 161 IYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS-LEDL-WSFNDEKVARAIFLSKIPIISAVGHETD 231 (432)
T ss_pred EecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC-HHHh-hhcCcHHHHHHHHcCCCCEEEecCcCCC
Confidence 33344556654555555443 334799999977644 3332 0022222334456788999876444443
No 105
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=50.00 E-value=1.6e+02 Score=24.87 Aligned_cols=85 Identities=12% Similarity=0.193 Sum_probs=51.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
...||.|-+.++..+..++-.+.+- ...+++|.++-.... .... +
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~~~~-g~l~~~i~~visn~~------------------------~~~~-~--------- 127 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWRWYS-GELDAEIALVISNHE------------------------DLRS-L--------- 127 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHHHHc-CCCCcEEEEEEEcCh------------------------hHHH-H---------
Confidence 3578999999999999888877663 334566555444321 0011 1
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeC---CchHHHHHHHHHhcCCCEEEEeeCC
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKD---HDMRERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g---~~~~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
+.+.++++.+..... ..-...+.+..++.++|+||+....
T Consensus 128 ---------A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagym 170 (280)
T TIGR00655 128 ---------VERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYM 170 (280)
T ss_pred ---------HHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCch
Confidence 112267665443211 1124567888888999999998653
No 106
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=49.63 E-value=87 Score=21.81 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhcCCCEEEEeeC
Q 026810 146 MRERLCLEIERLSLSAVIMGSR 167 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~ 167 (232)
-.+.|...+++.++|+||.-..
T Consensus 45 K~eei~~~~~~~~~d~vvfd~~ 66 (95)
T PF13167_consen 45 KVEEIKELIEELDADLVVFDNE 66 (95)
T ss_pred HHHHHHHHHhhcCCCEEEECCC
Confidence 4788999999999999999853
No 107
>PRK00766 hypothetical protein; Provisional
Probab=49.16 E-value=47 Score=26.41 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=43.7
Q ss_pred CcceEEEEeeCCchHHHHHHHHHh----cCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIER----LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~----~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
|+-.....+.|.+.-+.|++..+. .++.+|++..-..+++.= --.+.|-+.+.+||++|
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNv-------vD~~~l~~~tg~PVI~V 104 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNV-------VDIEELYRETGLPVIVV 104 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEE-------ecHHHHHHHHCCCEEEE
Confidence 667788999999989999999876 456677776554443321 23456778899999999
No 108
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=49.05 E-value=1.3e+02 Score=25.61 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=27.1
Q ss_pred HHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 154 IERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 154 a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
.+...+|+|++|...-..-....+..-.....-+.++.++||+++-+
T Consensus 193 m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~ 239 (303)
T TIGR00524 193 MQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAP 239 (303)
T ss_pred ccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEecc
Confidence 34347999999997632211111112223333445678899999954
No 109
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=48.71 E-value=87 Score=21.54 Aligned_cols=33 Identities=24% Similarity=0.090 Sum_probs=25.6
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 44 ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
|+|++.+-.+|...+..+..+. .++.++|+...
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----~~~~~~~~~~~ 33 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----YQVIAVTVDHG 33 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----CCEEEEEEcCC
Confidence 5889999999988888877752 27888888643
No 110
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=48.35 E-value=59 Score=21.27 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=28.4
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEE
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILV 75 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll 75 (232)
.++|.+++|..+....+.+...+.....+-.+..+
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 48999999999999999888877777777665543
No 111
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=48.07 E-value=1.5e+02 Score=26.23 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=24.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
-.++|+-+.+-=+|.- |..++-+.|++++.+|....
T Consensus 175 ~Gk~l~LlSGGIDSPV----A~~l~mkRG~~v~~v~f~~~ 210 (383)
T COG0301 175 QGKVLLLLSGGIDSPV----AAWLMMKRGVEVIPVHFGNP 210 (383)
T ss_pred CCcEEEEEeCCCChHH----HHHHHHhcCCEEEEEEEcCC
Confidence 4566666766555554 34555669999999999653
No 112
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=48.04 E-value=40 Score=23.84 Aligned_cols=59 Identities=8% Similarity=-0.074 Sum_probs=36.5
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
.|+++++.... ...+.......++|+|++|.+-+.. -.-..+++...++||.++++...
T Consensus 28 ~gi~~~i~a~~----~~e~~~~~~~~~~DvIll~PQi~~~---------~~~i~~~~~~~~ipv~~I~~~~Y 86 (104)
T PRK09590 28 QGKDIEVDAIT----ATEGEKAIAAAEYDLYLVSPQTKMY---------FKQFEEAGAKVGKPVVQIPPQAY 86 (104)
T ss_pred CCCceEEEEec----HHHHHHhhccCCCCEEEEChHHHHH---------HHHHHHHhhhcCCCEEEeCHHHc
Confidence 36765544422 3335455555679999999764321 13445566677899999987443
No 113
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=47.64 E-value=39 Score=27.76 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=43.5
Q ss_pred CCCEEEEeeCCCCcccccCCCccCchhHHHhccC--CCcEEEEcCCCCCCCCCceEEecCCCC
Q 026810 158 SLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC--VCPVVVVRYPDDKDDGEPLVKVKEPEK 218 (232)
Q Consensus 158 ~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~--~~PVliVp~~~~~~~~~~~~~~~~~~~ 218 (232)
.+|+++.=.+..+.-... -++..-+-+.++- ..||-+|+......+...+++.++-.+
T Consensus 154 ~adfVi~~YNP~s~~R~~---~~~~a~eil~~~r~~~tpVgivrnagR~~e~v~ittL~~l~~ 213 (249)
T COG1010 154 EADFVIALYNPISKRRPE---QLGRAFEILREHRSPDTPVGIVRNAGREGEEVRITTLGDLDE 213 (249)
T ss_pred hCCEEEEEECCccccchH---HHHHHHHHHHHhcCCCCcEEEEecCCCCCceEEEEEhHHhcc
Confidence 389999888776665555 5665556555553 599999999888888888888887665
No 114
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=47.39 E-value=97 Score=25.82 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.....+.+++.++|.|++..........- -+-..-.+|+..+++||++...+.
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~P~~~~~~~~---~l~~~~~~ia~~~~~pi~lYn~P~ 136 (284)
T cd00950 84 AIELTKRAEKAGADAALVVTPYYNKPSQE---GLYAHFKAIAEATDLPVILYNVPG 136 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcccccCCCCHH---HHHHHHHHHHhcCCCCEEEEEChh
Confidence 45666888999999999887654332211 122445567788899999997654
No 115
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=47.26 E-value=1.1e+02 Score=25.66 Aligned_cols=53 Identities=9% Similarity=-0.056 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC-CCcEEEEcCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYPD 202 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~-~~PVliVp~~~ 202 (232)
...+.+.+++.++|.|++..........- -+-.--..|+..+ +.||+++..+.
T Consensus 85 ~i~la~~a~~~Gad~v~v~~P~y~~~~~~---~i~~yf~~v~~~~~~lpv~lYn~P~ 138 (290)
T TIGR00683 85 AVELGKYATELGYDCLSAVTPFYYKFSFP---EIKHYYDTIIAETGGLNMIVYSIPF 138 (290)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcCCCCCHH---HHHHHHHHHHhhCCCCCEEEEeCcc
Confidence 45666888999999999977643322111 1112334566666 69999997654
No 116
>PRK08349 hypothetical protein; Validated
Probab=46.96 E-value=1.4e+02 Score=23.41 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=26.9
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
.++++++.|-.+|..++-++.. .|.+|+.+|+..
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cCCeEEEEEEeC
Confidence 3688999999999888865544 577999999974
No 117
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=46.70 E-value=92 Score=26.28 Aligned_cols=51 Identities=8% Similarity=-0.040 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
+-.+.+.+++.++|.+++-.........- -+-.--..|+..+++||+++..
T Consensus 88 ai~~a~~a~~~Gadav~~~pP~y~~~s~~---~i~~~f~~v~~a~~~pvilYn~ 138 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLPPYLINGEQE---GLYAHVEAVCESTDLGVIVYQR 138 (296)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCCCCHH---HHHHHHHHHHhccCCCEEEEeC
Confidence 34567888999999998876543222111 1122344577778899999973
No 118
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=46.26 E-value=87 Score=28.04 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=37.2
Q ss_pred HHHHHHHHHh--cCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC
Q 026810 147 RERLCLEIER--LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204 (232)
Q Consensus 147 ~~~I~~~a~~--~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~ 204 (232)
...|+...++ .++|.||+.-.+.|.+... ...-++++...+||+|-|.+.+.
T Consensus 130 ~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~~------q~~I~~ar~~~~pVLvDPKg~Df 183 (467)
T COG2870 130 ENKLLEKIKNALKSFDALVLSDYAKGVLTNV------QKMIDLAREAGIPVLVDPKGKDF 183 (467)
T ss_pred HHHHHHHHHHHhhcCCEEEEeccccccchhH------HHHHHHHHHcCCcEEECCCCcch
Confidence 4444444444 5699999999988766432 45567888999999999986663
No 119
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=46.04 E-value=1e+02 Score=25.87 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.-...+.+++.++|.|++..........- -+-.--.+|+..++.||++...+.
T Consensus 85 ~i~~a~~a~~~G~d~v~~~pP~~~~~~~~---~i~~~~~~ia~~~~~pv~lYn~P~ 137 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVTPYYNKPTQE---GLYQHFKAIAEATDLPIILYNVPG 137 (292)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHH---HHHHHHHHHHhcCCCCEEEEECcc
Confidence 44566888999999999977654332211 122344567778899999997653
No 120
>PRK13059 putative lipid kinase; Reviewed
Probab=44.81 E-value=75 Score=26.74 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=37.9
Q ss_pred CcceEEEEee-CCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc-CCCcEEEEcCCCCCCCCCc
Q 026810 133 GFPYKIHIVK-DHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVRYPDDKDDGEP 209 (232)
Q Consensus 133 ~~~v~~~~~~-g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~-~~~PVliVp~~~~~~~~~~ 209 (232)
+..+...... +.. . .....+.+.++|.||+. .|-|++.. +...++.. .++|+-++|.+..++..+.
T Consensus 32 g~~~~~~~~~~~~~-~-~~~~~~~~~~~d~vi~~-GGDGTv~e--------vv~gl~~~~~~~~lgviP~GTgNdfAr~ 99 (295)
T PRK13059 32 GYLVVPYRISLEYD-L-KNAFKDIDESYKYILIA-GGDGTVDN--------VVNAMKKLNIDLPIGILPVGTANDFAKF 99 (295)
T ss_pred CcEEEEEEccCcch-H-HHHHHHhhcCCCEEEEE-CCccHHHH--------HHHHHHhcCCCCcEEEECCCCHhHHHHH
Confidence 5565543333 333 3 33344445678877655 44455444 44445543 4699999999888776443
No 121
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=44.44 E-value=40 Score=22.23 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=22.9
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEE
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVIL 74 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~l 74 (232)
.++|++++|++.....+..+..+.....+.++..
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~ 79 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTR 79 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG--------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhcccccc
Confidence 4899999999999999999988877666666554
No 122
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=44.18 E-value=2e+02 Score=24.33 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=74.3
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
...||.|-+.++-....++-.+... ...+++|.++-..... ... +
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~~~~~~-~~~~~~i~~visn~~~------------------------~~~-l--------- 132 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLLWRWRS-GELPVEIAAVISNHDD------------------------LRS-L--------- 132 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHHHHHHc-CCCCcEEEEEEEcChh------------------------HHH-H---------
Confidence 3467888888887777776666552 3345665555443210 011 1
Q ss_pred HHHHHhhhhhhhCCcceEEEEee---CCchHHHHHHHHHhcCCCEEEEeeCCC-------------------CcccccCC
Q 026810 120 TKAADLARPLKEAGFPYKIHIVK---DHDMRERLCLEIERLSLSAVIMGSRGF-------------------GAEKRGSD 177 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~---g~~~~~~I~~~a~~~~~dlIV~G~~~~-------------------~~~~~~~~ 177 (232)
+++.++++.+.... .......+.+..++.++|+||+....+ +.+-+
T Consensus 133 ---------A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSLLP~--- 200 (286)
T PRK06027 133 ---------VERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHSFLPA--- 200 (286)
T ss_pred ---------HHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCceecCcccCCC---
Confidence 12227776553221 122245678888999999999987542 22222
Q ss_pred CccC-chhHHHhcc----CCCcEEEEcCCCCCCCCCceEEecCCCCCCCc-hHHhhhc
Q 026810 178 GKLG-SVSDYCVHH----CVCPVVVVRYPDDKDDGEPLVKVKEPEKDDED-DHVDRKL 229 (232)
Q Consensus 178 ~~~g-s~~~~vl~~----~~~PVliVp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 229 (232)
+-| ..-...+.+ +.|.|..|-. .-+.+.++.....+=+.+++ .-|-+++
T Consensus 201 -yrG~~~~~~ai~~G~~~tG~TiH~v~~--~~D~G~Ii~Q~~v~i~~~dt~~~L~~ri 255 (286)
T PRK06027 201 -FKGAKPYHQAYERGVKLIGATAHYVTA--DLDEGPIIEQDVIRVDHRDTAEDLVRAG 255 (286)
T ss_pred -CCCCCHHHHHHHCCCCeEEEEEEEEcC--CCcCCCcEEEEEEEcCCCCCHHHHHHHH
Confidence 223 222333332 4577777743 44566776666655544333 2344444
No 123
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=43.71 E-value=51 Score=26.45 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
...++..+.+.+.|.|++|.+. +-.... +..+...+=++.++||++.|....
T Consensus 13 ~~~ia~~v~~~gtDaI~VGGS~-gvt~~~----~~~~v~~ik~~~~lPvilfp~~~~ 64 (205)
T TIGR01769 13 IEKIAKNAKDAGTDAIMVGGSL-GIVESN----LDQTVKKIKKITNLPVILFPGNVN 64 (205)
T ss_pred HHHHHHHHHhcCCCEEEEcCcC-CCCHHH----HHHHHHHHHhhcCCCEEEECCCcc
Confidence 3446667788899999998652 212121 233444444447899999986444
No 124
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.09 E-value=92 Score=21.33 Aligned_cols=62 Identities=16% Similarity=0.038 Sum_probs=36.0
Q ss_pred CCcceEEEEeeCCchH--HHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 132 AGFPYKIHIVKDHDMR--ERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~--~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.|....++-..++.-. ..|-...+ ++|+||+-+.--+.- .-..+.+.+....+|++.++...
T Consensus 22 ~G~~~~~hg~~~~~~~~~~~l~~~i~--~aD~VIv~t~~vsH~-------~~~~vk~~akk~~ip~~~~~~~~ 85 (97)
T PF10087_consen 22 YGGKLIHHGRDGGDEKKASRLPSKIK--KADLVIVFTDYVSHN-------AMWKVKKAAKKYGIPIIYSRSRG 85 (97)
T ss_pred cCCEEEEEecCCCCccchhHHHHhcC--CCCEEEEEeCCcChH-------HHHHHHHHHHHcCCcEEEECCCC
Confidence 3666666622222212 23555554 489999987643322 12355667777889999998543
No 125
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=42.82 E-value=2.7e+02 Score=25.59 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=37.1
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCC---CcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF---GAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~---~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
.|+++.+....+-+ -|. ..++-|++|.+.- |.+..- .-.+...-+.++.++||+++=....
T Consensus 409 ~GinctYv~I~a~s---yim-----~evtkvfLGahailsNG~vysR---~GTa~valvAna~nVPVlVCCE~yK 472 (556)
T KOG1467|consen 409 RGINCTYVLINAAS---YIM-----LEVTKVFLGAHAILSNGAVYSR---VGTACVALVANAFNVPVLVCCEAYK 472 (556)
T ss_pred cCCCeEEEEehhHH---HHH-----HhcceeeechhhhhcCcchhhh---cchHHHHHHhcccCCCEEEEechhh
Confidence 49999988877633 222 3388999999752 222221 2222333455667899999975433
No 126
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=42.72 E-value=1.6e+02 Score=24.99 Aligned_cols=67 Identities=6% Similarity=-0.013 Sum_probs=39.6
Q ss_pred CcceEEEEeeCC-chHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC-CCcEEEEcCCC
Q 026810 133 GFPYKIHIVKDH-DMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYPD 202 (232)
Q Consensus 133 ~~~v~~~~~~g~-~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~-~~PVliVp~~~ 202 (232)
.+++-.-+...+ .-+....+.+++.++|.+++-.........- -+-.--..|+..+ ++||+++..+.
T Consensus 77 rvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~---~l~~yf~~va~a~~~lPv~iYn~P~ 145 (309)
T cd00952 77 RVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVD---TAVQFYRDVAEAVPEMAIAIYANPE 145 (309)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHH---HHHHHHHHHHHhCCCCcEEEEcCch
Confidence 355444443221 1255667888999999888887643222111 1112335677788 59999996653
No 127
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=42.56 E-value=1.2e+02 Score=25.51 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC-CCcEEEEcCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYPD 202 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~-~~PVliVp~~~ 202 (232)
+-.+.+.+++.++|.+++...-......- -+-.--..|+..+ +.||+++..+.
T Consensus 84 ai~~a~~A~~~Gad~v~v~pP~y~~~~~~---~l~~~f~~ia~a~~~lpv~iYn~P~ 137 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIVPYYNKPNQE---ALYDHFAEVADAVPDFPIIIYNIPG 137 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcCccCCCCCHH---HHHHHHHHHHHhccCCCEEEEeCch
Confidence 34466888999999999998754432221 1223445577888 79999997643
No 128
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=42.55 E-value=56 Score=29.26 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCCEEEEeeC
Q 026810 147 RERLCLEIERLSLSAVIMGSR 167 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~ 167 (232)
.+.|+++|+++++||+|+|.-
T Consensus 52 ~~~lv~fA~~~~idl~vVGPE 72 (428)
T COG0151 52 HEALVAFAKEKNVDLVVVGPE 72 (428)
T ss_pred HHHHHHHHHHcCCCEEEECCc
Confidence 778888999999999998874
No 129
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=41.44 E-value=1.1e+02 Score=21.49 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=27.1
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG 170 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~ 170 (232)
..|..+ .....+.+.+.+++.+.+.++|+|.+......
T Consensus 25 ~~G~~V--~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~ 62 (119)
T cd02067 25 DAGFEV--IDLGVDVPPEEIVEAAKEEDADAIGLSGLLTT 62 (119)
T ss_pred HCCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 336555 33334446889999999999999999876433
No 130
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=41.24 E-value=84 Score=26.72 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=26.8
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
+|+|++.|--+|..++..+.+. .|.+++.+|+-..
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEecCC
Confidence 5889999999988887776652 3567899998643
No 131
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=40.65 E-value=2e+02 Score=25.32 Aligned_cols=62 Identities=21% Similarity=0.142 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC-CCCCCCCCceEEecCCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY-PDDKDDGEPLVKVKEPEK 218 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~-~~~~~~~~~~~~~~~~~~ 218 (232)
.+.+...+.+.++|.| +|-.|. + .-.++..+.....+|+++||. .+.....+.+.++..+++
T Consensus 73 v~~~~~~~~~~~~d~v-IGVGGG---k------~iD~aK~~A~~~~~pfIsvPT~AS~Da~~Sp~aSv~~~~~ 135 (360)
T COG0371 73 VERLAAEAGEDGADVV-IGVGGG---K------TIDTAKAAAYRLGLPFISVPTIASTDAITSPVASVIYNGK 135 (360)
T ss_pred HHHHHHHhcccCCCEE-EEecCc---H------HHHHHHHHHHHcCCCEEEecCccccccccCCceeeEEcCC
Confidence 3344444444556654 454331 1 126888888889999999998 344444666666666665
No 132
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=40.64 E-value=2.8e+02 Score=25.03 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=27.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~ 78 (232)
-.++++.-++-.+..+...|..+....|-.+.++.+-
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 3455666688888889999988765567778777664
No 133
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=40.59 E-value=1.6e+02 Score=25.50 Aligned_cols=59 Identities=10% Similarity=0.020 Sum_probs=35.9
Q ss_pred CcceEEEEeeCCc---hHHHHHHHHHhcCCCEEE-EeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 133 GFPYKIHIVKDHD---MRERLCLEIERLSLSAVI-MGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 133 ~~~v~~~~~~g~~---~~~~I~~~a~~~~~dlIV-~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
++.+.+.+..|++ ..+.+.+.+++.++|.|| +|...- ..++.-+.....+|++.||...
T Consensus 49 ~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~-----------~D~aK~ia~~~~~p~i~VPTta 111 (349)
T cd08550 49 IIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKT-----------LDTAKAVADRLDKPIVIVPTIA 111 (349)
T ss_pred CCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHH-----------HHHHHHHHHHcCCCEEEeCCcc
Confidence 5555454444442 355677888889999877 553221 2344444444578999999743
No 134
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=40.42 E-value=2.8e+02 Score=25.05 Aligned_cols=116 Identities=18% Similarity=0.149 Sum_probs=63.1
Q ss_pred CCcCC-CCCcEEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCC
Q 026810 8 PDSDH-PHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGA 86 (232)
Q Consensus 8 ~~~~~-~~~pvl~v~~~~~~~~~~~~~~~~~~~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~ 86 (232)
|+.+. ...|+|+|| + ...+..+ +|.++... .++|++ +.|-.+.++.=..+.
T Consensus 100 p~~e~v~~~PlLiVp----P-------------~iNk~yi-~Dl~~~~s-~V~~l~----~~g~~vfvIsw~nPd----- 151 (445)
T COG3243 100 PLTEKVLKRPLLIVP----P-------------WINKFYI-LDLSPEKS-LVRWLL----EQGLDVFVISWRNPD----- 151 (445)
T ss_pred CCCCccCCCceEeec----c-------------ccCceeE-EeCCCCcc-HHHHHH----HcCCceEEEeccCch-----
Confidence 44445 778888888 3 4555555 67776532 344444 467777776644321
Q ss_pred CCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEee
Q 026810 87 DWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGS 166 (232)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~ 166 (232)
....+..+++....-+.+....+++.....+++..-+.+-|.-.+..+.-.+.+.=..+.++++
T Consensus 152 ----------------~~~~~~~~edYi~e~l~~aid~v~~itg~~~InliGyCvGGtl~~~ala~~~~k~I~S~T~lts 215 (445)
T COG3243 152 ----------------ASLAAKNLEDYILEGLSEAIDTVKDITGQKDINLIGYCVGGTLLAAALALMAAKRIKSLTLLTS 215 (445)
T ss_pred ----------------HhhhhccHHHHHHHHHHHHHHHHHHHhCccccceeeEecchHHHHHHHHhhhhcccccceeeec
Confidence 1111233333333333344444555555557887777777765566666666553445555655
Q ss_pred C
Q 026810 167 R 167 (232)
Q Consensus 167 ~ 167 (232)
.
T Consensus 216 ~ 216 (445)
T COG3243 216 P 216 (445)
T ss_pred c
Confidence 3
No 135
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=39.55 E-value=2.4e+02 Score=24.07 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=32.9
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCC---cccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG---AEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~---~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
.|+++....-. . .- ....+ +|.|++|...-. .+... .-.....-+.++.++||+++-+
T Consensus 170 ~GI~vtlI~Ds--a-v~---~~m~~--vd~VivGAd~v~~nG~v~nk---iGT~~~A~~Ak~~~vPv~V~a~ 230 (310)
T PRK08535 170 YGIPVTLIVDS--A-VR---YFMKD--VDKVVVGADAITANGAVINK---IGTSQIALAAHEARVPFMVAAE 230 (310)
T ss_pred CCCCEEEEehh--H-HH---HHHHh--CCEEEECccEEecCCCEEeH---HhHHHHHHHHHHhCCCEEEecc
Confidence 38876655422 2 22 22333 999999997632 22221 2223333455678899999854
No 136
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=39.33 E-value=1.7e+02 Score=22.20 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFG 170 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~ 170 (232)
.+..|.+.+++.++++|++|....+
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g 95 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFG 95 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccc
Confidence 4677888888889999999987643
No 137
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=39.32 E-value=55 Score=23.55 Aligned_cols=43 Identities=14% Similarity=0.246 Sum_probs=33.9
Q ss_pred HHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 154 IERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 154 a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.-+.+++.||+|+...+.+ -++.-+...++.-.|-|...|.+.
T Consensus 57 ~lee~~E~ivvGTG~~G~l------~l~~ea~e~~r~k~~~vi~~pT~E 99 (121)
T COG1504 57 LLEEGPEVIVVGTGQSGML------ELSEEAREFFRKKGCEVIELPTPE 99 (121)
T ss_pred HHhcCCcEEEEecCceeEE------EeCHHHHHHHHhcCCeEEEeCCHH
Confidence 3447899999998876654 346788889999999999998754
No 138
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=38.71 E-value=1.5e+02 Score=25.20 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.-...+.+++.++|.+++..........- -+-..-..|...++.||+++..+
T Consensus 90 ~i~~~~~a~~~Gadav~~~pP~y~~~~~~---~i~~~f~~va~~~~lpi~lYn~~ 141 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLPPYLTEAPQE---GLAAHVEAVCKSTDLGVIVYNRD 141 (303)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCCCCHH---HHHHHHHHHHHhCCCCEEEEcCC
Confidence 34556788999999999977643322111 12233445777889999999753
No 139
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=38.29 E-value=2.8e+02 Score=24.36 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=28.0
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~ 78 (232)
..++|+|++.+--+|.-++..+.+ .+.+++.+|+.
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~ 38 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFR 38 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEe
Confidence 457999999999999887776654 46788888876
No 140
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=38.27 E-value=1.1e+02 Score=25.65 Aligned_cols=95 Identities=20% Similarity=0.086 Sum_probs=56.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHH
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKA 122 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (232)
.++++=-.|-.+..-+..++...+..|+++.-.-.+.++..+..+.+. .++.-+.+.
T Consensus 46 ~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGl------------ge~gL~~l~----------- 102 (286)
T COG2876 46 LRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGL------------GEEGLKLLK----------- 102 (286)
T ss_pred eEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCccccccc------------CHHHHHHHH-----------
Confidence 466666667777777777777788889988777777766544322221 111112221
Q ss_pred HHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCC
Q 026810 123 ADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG 170 (232)
Q Consensus 123 ~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~ 170 (232)
+.....|.++.++++.-.+ .+.+.++ +|+|=+|.+...
T Consensus 103 ----~a~~~~Gl~vvtEvm~~~~-~e~~~~y-----~DilqvGARNMQ 140 (286)
T COG2876 103 ----RAADETGLPVVTEVMDVRD-VEAAAEY-----ADILQVGARNMQ 140 (286)
T ss_pred ----HHHHHcCCeeEEEecCHHH-HHHHHhh-----hhHHHhcccchh
Confidence 1223348898888876554 3333322 788888887643
No 141
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=38.22 E-value=2.2e+02 Score=23.73 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=38.4
Q ss_pred hCCcceEEEEeeCC-chHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCC-CcEEEEcCCCCCCCCC
Q 026810 131 EAGFPYKIHIVKDH-DMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVVRYPDDKDDGE 208 (232)
Q Consensus 131 ~~~~~v~~~~~~g~-~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~-~PVliVp~~~~~~~~~ 208 (232)
..++.+........ . +..++..+.+.++|+||+. .|-|++.+ +...+..... .|+-++|.+..++..+
T Consensus 30 ~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~d~ivv~-GGDGTl~~--------v~~~l~~~~~~~~lgiiP~Gt~N~~a~ 99 (293)
T TIGR00147 30 EEGMEIHVRVTWEKGD-AARYVEEARKFGVDTVIAG-GGDGTINE--------VVNALIQLDDIPALGILPLGTANDFAR 99 (293)
T ss_pred HCCCEEEEEEecCccc-HHHHHHHHHhcCCCEEEEE-CCCChHHH--------HHHHHhcCCCCCcEEEEcCcCHHHHHH
Confidence 34666666655543 3 4445555555678877765 34454433 3444444333 4677899877665433
No 142
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=38.09 E-value=47 Score=24.40 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=34.9
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
...+|+|+.|....|....+.++.-+...|.++..+...+.
T Consensus 39 ~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~t 79 (137)
T PF02878_consen 39 NGSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVPT 79 (137)
T ss_dssp TSSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-H
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccCc
Confidence 46899999999999999999999999999999998885543
No 143
>PRK08227 autoinducer 2 aldolase; Validated
Probab=38.04 E-value=2.4e+02 Score=23.60 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=40.5
Q ss_pred hhhhhhhCCcceEEEEeeCCc------hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 125 LARPLKEAGFPYKIHIVKDHD------MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 125 ~~~~~~~~~~~v~~~~~~g~~------~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
+.+.+.++|+++-.....|.. ......+.+.+.++|+|=+-..+ ..-++++..+++||+|-
T Consensus 132 v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~-------------~~f~~vv~a~~vPVvia 198 (264)
T PRK08227 132 LVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVE-------------EGFERITAGCPVPIVIA 198 (264)
T ss_pred HHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCH-------------HHHHHHHHcCCCcEEEe
Confidence 445566668887664444432 13344567788999988766542 12245777899999987
Q ss_pred cCC
Q 026810 199 RYP 201 (232)
Q Consensus 199 p~~ 201 (232)
-.+
T Consensus 199 GG~ 201 (264)
T PRK08227 199 GGK 201 (264)
T ss_pred CCC
Confidence 643
No 144
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=37.96 E-value=1.9e+02 Score=23.56 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=28.0
Q ss_pred HHHHHHHH---HhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEc
Q 026810 147 RERLCLEI---ERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 147 ~~~I~~~a---~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp 199 (232)
.+.+.+.+ ++.++|+|||-+-|++.- .-+.+-+.+.+||++-+
T Consensus 164 ~~~l~~Aa~~L~~~gadlIvLDCmGYt~~----------~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 164 EEELAAAARELAEQGADLIVLDCMGYTQE----------MRDIVQRALGKPVLLSR 209 (221)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCHH----------HHHHHHHHhCCCEEeHH
Confidence 44454444 456899999999875532 22234455889998754
No 145
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=37.53 E-value=2.2e+02 Score=23.04 Aligned_cols=27 Identities=11% Similarity=-0.043 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 026810 52 DESAFAVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 52 ~~s~~al~~A~~la~~~~~~l~ll~v~ 78 (232)
..+...++|+.+.+...+.++.++..-
T Consensus 40 S~n~~la~~~~~~~~~~g~~v~~idl~ 66 (219)
T TIGR02690 40 SYSRLLAEEAARLLGCEGRETRIFDPP 66 (219)
T ss_pred chHHHHHHHHHHHHhhcCCEEEEeCcc
Confidence 456778999999999778898888853
No 146
>PHA02031 putative DnaG-like primase
Probab=37.33 E-value=1.3e+02 Score=25.25 Aligned_cols=38 Identities=5% Similarity=-0.160 Sum_probs=31.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~ 78 (232)
.++|++++|++.....|...|+.++...+.++.++...
T Consensus 206 ~~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~lP 243 (266)
T PHA02031 206 CPRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIITP 243 (266)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEECC
Confidence 37999999999999999999999988777776655543
No 147
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=36.88 E-value=66 Score=26.40 Aligned_cols=53 Identities=11% Similarity=0.148 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
....|++.+.+.+.|.|.+|....-.. +. .-.+.++|-...+.||++.|....
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~gvt~-~~----~~~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDGVTE-EN----VDNVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcccccH-HH----HHHHHHHHHhhcCCCEEEecCChh
Confidence 366888999999999999997642222 22 234566666688999999997444
No 148
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=36.66 E-value=51 Score=27.10 Aligned_cols=20 Identities=25% Similarity=0.099 Sum_probs=12.8
Q ss_pred HHhccCCCcEEEEcCCCCCC
Q 026810 186 YCVHHCVCPVVVVRYPDDKD 205 (232)
Q Consensus 186 ~vl~~~~~PVliVp~~~~~~ 205 (232)
+.|...+||+++||.+.+++
T Consensus 83 ~~L~~~~~p~~~vPG~~Dap 102 (255)
T PF14582_consen 83 RILGELGVPVFVVPGNMDAP 102 (255)
T ss_dssp HHHHCC-SEEEEE--TTS-S
T ss_pred HHHHhcCCcEEEecCCCCch
Confidence 46778999999999877663
No 149
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=36.64 E-value=58 Score=28.59 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=7.5
Q ss_pred HHHHHHHhcCCCEEEEe
Q 026810 149 RLCLEIERLSLSAVIMG 165 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G 165 (232)
.+++.|.+.++|+||++
T Consensus 31 ~~l~~a~~~~vD~vliA 47 (390)
T COG0420 31 ELLEIAKEEKVDFVLIA 47 (390)
T ss_pred HHHHHHHHccCCEEEEc
Confidence 33444444444444444
No 150
>PRK08185 hypothetical protein; Provisional
Probab=36.62 E-value=84 Score=26.59 Aligned_cols=83 Identities=13% Similarity=-0.044 Sum_probs=55.0
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC--------
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK-------- 204 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~-------- 204 (232)
+..|-.--+.......++++.|++.+.-+|+..+.+....... -+......+...+++||.+==.+...
T Consensus 12 ~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~---~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai 88 (283)
T PRK08185 12 QFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGD---NFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAI 88 (283)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccH---HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 4444444444445699999999999999999998765433333 45667778888899998765444432
Q ss_pred CCCCceEEecCCCC
Q 026810 205 DDGEPLVKVKEPEK 218 (232)
Q Consensus 205 ~~~~~~~~~~~~~~ 218 (232)
+.+.-.+.++++.-
T Consensus 89 ~~Gf~SVM~D~S~l 102 (283)
T PRK08185 89 RCGFTSVMIDGSLL 102 (283)
T ss_pred HcCCCEEEEeCCCC
Confidence 23444566666653
No 151
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=36.33 E-value=1.2e+02 Score=24.59 Aligned_cols=48 Identities=13% Similarity=0.051 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
..+..+..++.+.|.||+++.....- -.+-+..++..+..|.+|+...
T Consensus 49 eaav~~~~e~~~pDfvi~isPNpaaP-------GP~kARE~l~~s~~PaiiigDa 96 (277)
T COG1927 49 EAAVTEMLEEFNPDFVIYISPNPAAP-------GPKKAREILSDSDVPAIIIGDA 96 (277)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCC-------CchHHHHHHhhcCCCEEEecCC
Confidence 45666778899999999998754321 1356778999999999999753
No 152
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=36.33 E-value=80 Score=22.11 Aligned_cols=55 Identities=13% Similarity=-0.033 Sum_probs=34.6
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
..|+++++... + ...+....+ ++|+|++|..-+..+ ....+.+.....||.+++.
T Consensus 26 ~~gi~~~i~a~---~-~~e~~~~~~--~~Dvill~PQv~~~~---------~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 26 ERGVPLEAAAG---A-YGSHYDMIP--DYDLVILAPQMASYY---------DELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred HCCCcEEEEEe---e-HHHHHHhcc--CCCEEEEcChHHHHH---------HHHHHHhhhcCCCEEEeCH
Confidence 34777665532 2 444555544 589999998754322 3445566667899999885
No 153
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=36.22 E-value=81 Score=27.09 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCc--ccccCCCccCchhHHHhccCCCcEEEEcCCCCC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGA--EKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~--~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~ 204 (232)
+....++.+++ +|+||+|..+.-. +..+ +...+.+ .++.++||++.|.+--.+
T Consensus 162 a~~~al~AI~~--ADlIvlgPGSlyTSIiPnL---lv~gI~e-AI~~s~a~kV~v~N~~tq 216 (310)
T TIGR01826 162 ALREAVEAIRE--ADLIILGPGSLYTSIIPNL---LVPEIAE-ALRESKAPKVYVCNLMTQ 216 (310)
T ss_pred CCHHHHHHHHh--CCEEEECCCcCHHHhchhc---CchhHHH-HHHhCCCCEEEEeCCCCC
Confidence 46677788877 9999999765221 1222 3444444 567789999999874333
No 154
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=35.91 E-value=3e+02 Score=24.00 Aligned_cols=118 Identities=6% Similarity=-0.017 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCc
Q 026810 55 AFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGF 134 (232)
Q Consensus 55 ~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (232)
...+.|...-+++.|++..-++++..+.. ..+...... +.+.++...+...++
T Consensus 105 ~~~~~~sve~a~~~GAdAVk~lv~~~~d~-------------------~~~~~~~~~--------~~l~rv~~ec~~~gi 157 (340)
T PRK12858 105 DLLDNWSVRRIKEAGADAVKLLLYYRPDE-------------------DDAINDRKH--------AFVERVGAECRANDI 157 (340)
T ss_pred cccccccHHHHHHcCCCEEEEEEEeCCCc-------------------chHHHHHHH--------HHHHHHHHHHHHcCC
Confidence 34566667778889998888888743220 000011111 112234445555677
Q ss_pred ceEEEE--ee-C-----------C---chHHHHHHHHH-hcCCCEEEEeeCCCCcccccCCCcc------C-----chhH
Q 026810 135 PYKIHI--VK-D-----------H---DMRERLCLEIE-RLSLSAVIMGSRGFGAEKRGSDGKL------G-----SVSD 185 (232)
Q Consensus 135 ~v~~~~--~~-g-----------~---~~~~~I~~~a~-~~~~dlIV~G~~~~~~~~~~~~~~~------g-----s~~~ 185 (232)
++-... .. | . -+..++-.+++ +.++|++=+-..+....-.. +- + ..-.
T Consensus 158 PlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg---~~~~~~~~~~~~~~~~f~ 234 (340)
T PRK12858 158 PFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEG---FDGFEEAYTQEEAFKLFR 234 (340)
T ss_pred ceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccc---cccccccccHHHHHHHHH
Confidence 764432 11 1 1 12333434443 68999998876643311111 10 0 2344
Q ss_pred HHhccCCCcEEEEcCCC
Q 026810 186 YCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 186 ~vl~~~~~PVliVp~~~ 202 (232)
++...+++|+++.-.+.
T Consensus 235 ~~~~a~~~P~vvlsgG~ 251 (340)
T PRK12858 235 EQSDATDLPFIFLSAGV 251 (340)
T ss_pred HHHhhCCCCEEEECCCC
Confidence 56777999999987544
No 155
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=35.86 E-value=2.4e+02 Score=24.51 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=35.1
Q ss_pred CcceEEEEeeCCch---HHHHHHHHHhcCCCEEE-EeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 133 GFPYKIHIVKDHDM---RERLCLEIERLSLSAVI-MGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 133 ~~~v~~~~~~g~~~---~~~I~~~a~~~~~dlIV-~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
++.+.+....+++. .+.+.+.+++.++|.|| +|... ...++.-+......|++.||..
T Consensus 56 ~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGs-----------v~D~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 56 GLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGK-----------TLDTAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChH-----------HHHHHHHHHHHcCCCEEEeCCc
Confidence 55554444455543 45667778888999877 44322 1234444444457999999974
No 156
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=35.72 E-value=2.7e+02 Score=23.57 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
+-++.+.+++.++|-|++-..-......- .+-.--..|+..++.|++++..+..
T Consensus 88 ai~lak~a~~~Gad~il~v~PyY~k~~~~---gl~~hf~~ia~a~~lPvilYN~P~~ 141 (299)
T COG0329 88 AIELAKHAEKLGADGILVVPPYYNKPSQE---GLYAHFKAIAEAVDLPVILYNIPSR 141 (299)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCChH---HHHHHHHHHHHhcCCCEEEEeCccc
Confidence 55788899999999999988765433322 1223344677888999999976443
No 157
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=35.08 E-value=2.8e+02 Score=23.92 Aligned_cols=61 Identities=21% Similarity=0.163 Sum_probs=35.9
Q ss_pred CCcceEEEEeeCCch---HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 132 AGFPYKIHIVKDHDM---RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~---~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.++.+.+....+++. .+.+.+.+++.++|+|| |-.|.+.+ .++.-+......|++.||...
T Consensus 48 ~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~II-avGGGS~i---------D~aK~ia~~~~~P~iaIPTTa 111 (351)
T cd08170 48 AGIDARFEVFGGECTRAEIERLAEIARDNGADVVI-GIGGGKTL---------DTAKAVADYLGAPVVIVPTIA 111 (351)
T ss_pred CCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEE-EecCchhh---------HHHHHHHHHcCCCEEEeCCcc
Confidence 366665555555553 44667777888999755 33332221 233333334578999999743
No 158
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=34.70 E-value=2.8e+02 Score=24.45 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=36.1
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchh-HHHhccCCCcEEEEcCCCC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVS-DYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~-~~vl~~~~~PVliVp~~~~ 203 (232)
.|+++.... +.-+. .......+|+|++|..+-..-....+ -.|... .-+.++.++||+++-+...
T Consensus 226 ~GIpvtlI~---Dsa~~---~~m~~~~Vd~VivGAD~I~~NG~v~N-KiGTy~lA~~Ak~~~vPfyV~ap~~k 291 (363)
T PRK05772 226 EGIKVTLIT---DTAVG---LVMYKDMVNNVMVGADRILRDGHVFN-KIGTFKEAVIAHELGIPFYALAPTST 291 (363)
T ss_pred CCCCEEEEe---hhHHH---HHHhhcCCCEEEECccEEecCCCEee-hhhhHHHHHHHHHhCCCEEEEccccc
Confidence 388866543 22122 22334579999999976321111101 235444 3445678899999965443
No 159
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=34.55 E-value=2.3e+02 Score=23.53 Aligned_cols=49 Identities=14% Similarity=0.035 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.+......++++.|++|+.+.... ..+ ..-++.++..+.+|++|+-...
T Consensus 49 ~~~~~~~~~~~~pDf~i~isPN~a-~PG------P~~ARE~l~~~~iP~IvI~D~p 97 (277)
T PRK00994 49 EEVVKKMLEEWKPDFVIVISPNPA-APG------PKKAREILKAAGIPCIVIGDAP 97 (277)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCC-CCC------chHHHHHHHhcCCCEEEEcCCC
Confidence 334555567899999999987533 222 2457789999999999997633
No 160
>PRK00919 GMP synthase subunit B; Validated
Probab=34.50 E-value=3e+02 Score=23.60 Aligned_cols=36 Identities=25% Similarity=0.162 Sum_probs=29.5
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
++++|++.|--+|..++.++.+ ..|.+++.+|+-..
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~---~lG~~v~aV~vD~G 57 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHR---AIGDRLTPVFVDTG 57 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHH---HhCCeEEEEEEECC
Confidence 7899999999999988877665 24678999999754
No 161
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=34.43 E-value=1.2e+02 Score=25.27 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=25.0
Q ss_pred CCCEEEEeeCCC---CcccccCCCccCchhH-HHhccCCCcEEEEcC
Q 026810 158 SLSAVIMGSRGF---GAEKRGSDGKLGSVSD-YCVHHCVCPVVVVRY 200 (232)
Q Consensus 158 ~~dlIV~G~~~~---~~~~~~~~~~~gs~~~-~vl~~~~~PVliVp~ 200 (232)
.+|.+++|...- |.+... .|+..- -+.++.++||+++-.
T Consensus 151 ~vd~VlvGAd~V~~nG~v~nk----vGT~~~Al~A~~~~vPv~V~~~ 193 (253)
T PRK06372 151 NVDAVIVGSDSVLYDGGLIHK----NGTFPLALCARYLKKPFYSLTI 193 (253)
T ss_pred hCCEEEECccEEecCCCEeeh----hhHHHHHHHHHHcCCCEEEEee
Confidence 399999999763 222222 243333 444678899999865
No 162
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=34.22 E-value=3.4e+02 Score=24.23 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=52.8
Q ss_pred ceEEEEeeCCc-hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC---CCcEEEEcCCCCCCCCCce
Q 026810 135 PYKIHIVKDHD-MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC---VCPVVVVRYPDDKDDGEPL 210 (232)
Q Consensus 135 ~v~~~~~~g~~-~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~---~~PVliVp~~~~~~~~~~~ 210 (232)
+++.++.-.+. .-+++..++.+.++..+|+|..=.+.-.+. .+++.+.+.++.++- ..|++++-. +..-
T Consensus 247 ~v~~~iIasn~~sleaaa~~~~~~G~~a~Il~d~ieGEArev-g~v~asiarev~~~g~Pf~~P~~llsG------GETT 319 (422)
T COG2379 247 NVENRIIASNRLSLEAAASEARALGFKAVILGDTIEGEAREV-GRVHASIAREVARRGRPFKKPVVLLSG------GETT 319 (422)
T ss_pred cceeEEEechHHHHHHHHHHHHhcCCeeEEeeccccccHHHH-HHHHHHHHHHHHHcCCCCCCCEEEEEC------CceE
Confidence 44555554432 478899999999999999998654443322 237889999999986 799999973 4445
Q ss_pred EEecCCC
Q 026810 211 VKVKEPE 217 (232)
Q Consensus 211 ~~~~~~~ 217 (232)
+++++..
T Consensus 320 VTvrG~g 326 (422)
T COG2379 320 VTVRGNG 326 (422)
T ss_pred EEecCCC
Confidence 5555544
No 163
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=34.19 E-value=3.1e+02 Score=24.44 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=49.0
Q ss_pred HHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc--CCCcEEEEc
Q 026810 122 AADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH--CVCPVVVVR 199 (232)
Q Consensus 122 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~--~~~PVliVp 199 (232)
...+.+.+.+.|+.|+.+.....+ ...|.+.+.+ ++-+|+|+...+.-.-. .++.....++.. -..++.++-
T Consensus 264 a~aiaegl~~~gv~v~~~~~~~~~-~~eI~~~i~~--a~~~vvGsPT~~~~~~p---~i~~~l~~v~~~~~~~k~~~vfg 337 (388)
T COG0426 264 AQAIAEGLMKEGVDVEVINLEDAD-PSEIVEEILD--AKGLVVGSPTINGGAHP---PIQTALGYVLALAPKNKLAGVFG 337 (388)
T ss_pred HHHHHHHhhhcCCceEEEEcccCC-HHHHHHHHhh--cceEEEecCcccCCCCc---hHHHHHHHHHhccCcCceEEEEe
Confidence 333445556669999999888887 7778888876 99999999864332222 223333333333 247788877
Q ss_pred CCCCC
Q 026810 200 YPDDK 204 (232)
Q Consensus 200 ~~~~~ 204 (232)
.-.+.
T Consensus 338 S~GW~ 342 (388)
T COG0426 338 SYGWS 342 (388)
T ss_pred ccCCC
Confidence 65543
No 164
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=33.95 E-value=3e+02 Score=23.44 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=33.2
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCC---cccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG---AEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~---~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
+.|+++....- .. .- ....+ +|.|++|..+-. .+... .-.....-+.++.++||+++-+
T Consensus 164 ~~gI~vtlI~D--sa-~~---~~m~~--vd~VivGad~v~~nG~v~nk---iGT~~lA~~Ak~~~vPv~V~a~ 225 (301)
T TIGR00511 164 DYGIPVTLIVD--SA-VR---YFMKE--VDHVVVGADAITANGALINK---IGTSQLALAAREARVPFMVAAE 225 (301)
T ss_pred HCCCCEEEEeh--hH-HH---HHHHh--CCEEEECccEEecCCCEEEH---HhHHHHHHHHHHhCCCEEEEcc
Confidence 34887765532 11 22 22333 999999997632 22221 2223333455677899999854
No 165
>PRK05370 argininosuccinate synthase; Validated
Probab=33.88 E-value=3.7e+02 Score=24.46 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=29.9
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
..++|++++.+--++..++.|...- +.+|+.+++--
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~----~~eVia~~aDv 45 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK----GAVPYAYTANL 45 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc----CCeEEEEEEEC
Confidence 3589999999999998888887763 78899888864
No 166
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=33.87 E-value=1.2e+02 Score=19.46 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=26.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEE
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVIL 74 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~l 74 (232)
.++|.++.|.......+...+.+.+...+..+.+
T Consensus 43 ~~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~i 76 (79)
T cd01029 43 ARTVILAFDNDEAGKKAAARALELLLALGGRVRV 76 (79)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 3999999999999888887777777665554443
No 167
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=33.52 E-value=82 Score=27.02 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCc--ccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGA--EKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~--~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
+....++.+++ +|+||+|..+.-. +.-+ +...+. +.++.+++|++.|.+-
T Consensus 164 ~~~~~l~AI~~--ADlIvlgPGSlyTSI~P~L---lv~gi~-eAi~~s~a~kV~V~ni 215 (309)
T cd07044 164 PSREVLEAIEK--ADNIVIGPGSLYTSILPNI---SVPGIR-EALKKTXAKKVYVSNI 215 (309)
T ss_pred CCHHHHHHHHh--CCEEEECCCcCHHHhhhhc---CcHhHH-HHHHhcCCCeEEECCC
Confidence 46677788877 9999999765211 1122 334344 4666789999999874
No 168
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=33.19 E-value=1.3e+02 Score=27.12 Aligned_cols=75 Identities=11% Similarity=0.132 Sum_probs=39.5
Q ss_pred EeeCCchHHHHHHHH---HhcC-CCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCCCC-CCceEEec
Q 026810 140 IVKDHDMRERLCLEI---ERLS-LSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDD-GEPLVKVK 214 (232)
Q Consensus 140 ~~~g~~~~~~I~~~a---~~~~-~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~~~-~~~~~~~~ 214 (232)
.+.|......|++.+ ++.+ +|.||+|+.|.+ +..+. -|---.....+..|.+||+.-=.+++... .+-++-++
T Consensus 171 ~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS-iEDLW-~FNdE~vaRAi~~s~iPvISAVGHEtD~tL~DfVAD~R 248 (440)
T COG1570 171 LVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS-IEDLW-AFNDEIVARAIAASRIPVISAVGHETDFTLADFVADLR 248 (440)
T ss_pred cccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch-HHHHh-ccChHHHHHHHHhCCCCeEeecccCCCccHHHhhhhcc
Confidence 344655444444433 3333 999999977644 44330 01222233455678999987654444433 44444444
Q ss_pred CC
Q 026810 215 EP 216 (232)
Q Consensus 215 ~~ 216 (232)
.+
T Consensus 249 Ap 250 (440)
T COG1570 249 AP 250 (440)
T ss_pred CC
Confidence 44
No 169
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=33.04 E-value=1.1e+02 Score=24.58 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC-----CCC--CCCCceEEecCCCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP-----DDK--DDGEPLVKVKEPEKD 219 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~-----~~~--~~~~~~~~~~~~~~~ 219 (232)
....++..-+..--++|+|..+.+. +|.--..=+.+...|+++|.+. ... ..++++..+..++++
T Consensus 28 ~~~a~~~i~~~~gkv~V~G~GkSG~--------Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg~i~~~DvviaiS~SGeT 99 (202)
T COG0794 28 FVRAVELILECKGKVFVTGVGKSGL--------IGKKFAARLASTGTPAFFVGPAEALHGDLGMITPGDVVIAISGSGET 99 (202)
T ss_pred HHHHHHHHHhcCCcEEEEcCChhHH--------HHHHHHHHHHccCCceEEecCchhccCCccCCCCCCEEEEEeCCCcH
Confidence 3333444444456788888654332 2222233466788999999943 222 458899999999999
Q ss_pred CCchHHhhhccc
Q 026810 220 DEDDHVDRKLKD 231 (232)
Q Consensus 220 ~~~~~~~~~~~~ 231 (232)
.|..++-..+++
T Consensus 100 ~el~~~~~~aK~ 111 (202)
T COG0794 100 KELLNLAPKAKR 111 (202)
T ss_pred HHHHHHHHHHHH
Confidence 999998777654
No 170
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=33.00 E-value=3.4e+02 Score=23.85 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=35.7
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchh-HHHhccCCCcEEEEcC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVS-DYCVHHCVCPVVVVRY 200 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~-~~vl~~~~~PVliVp~ 200 (232)
..|+++.... ++ .+....++..+|+||+|..+--.-....+ -.|... .-+.++.++||+++-+
T Consensus 217 ~~GI~vtlI~---Ds---av~~~M~~~~Vd~VivGAd~I~~nG~v~N-KiGTy~lA~~Ak~~~vPfyV~Ap 280 (356)
T PRK08334 217 YDGIPLKLIS---DN---MAGFVMQQGKVDAIIVGADRIVANGDFAN-KIGTYTLAVLAKEHGIPFFTVAP 280 (356)
T ss_pred HCCCCEEEEe---hh---HHHHHhhhcCCCEEEECccEEecCCCEee-hhhHHHHHHHHHHhCCCEEEEcc
Confidence 3488876554 22 12233445679999999976322111111 134443 3445678999999854
No 171
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=32.51 E-value=3.1e+02 Score=23.15 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=34.1
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchh-HHHhccCCCcEEEEcCCCC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVS-DYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~-~~vl~~~~~PVliVp~~~~ 203 (232)
.|+++.... +.-.-.+ .++ +|.+++|..+-..-....+ -.|... .-+.++.++||+++-+...
T Consensus 159 ~GI~vtlI~---Dsa~~~~---m~~--vd~VivGAD~I~~nG~v~N-KiGT~~lA~~Ak~~~vPfyV~a~~~k 222 (275)
T PRK08335 159 LGIEFEVIT---DAQLGLF---AKE--ATLALVGADNVTRDGYVVN-KAGTYLLALACHDNGVPFYVAAETFK 222 (275)
T ss_pred CCCCEEEEe---ccHHHHH---HHh--CCEEEECccEEecCCCEee-hhhHHHHHHHHHHcCCCEEEECccce
Confidence 377766544 2212222 333 9999999975322111111 124333 3445678899999965333
No 172
>PRK00074 guaA GMP synthase; Reviewed
Probab=32.50 E-value=4e+02 Score=24.55 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=28.3
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
.++|+|++.+-.+|.-++..+.+. .+.++..+|+-.
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~---lg~~v~av~vd~ 250 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKA---IGDQLTCVFVDH 250 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHH---hCCceEEEEEeC
Confidence 378999999999988887766653 256799999864
No 173
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=32.50 E-value=1.8e+02 Score=27.24 Aligned_cols=74 Identities=12% Similarity=0.161 Sum_probs=55.1
Q ss_pred hhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc-CCCcEEEEcCCCCCCC
Q 026810 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVRYPDDKDD 206 (232)
Q Consensus 129 ~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~-~~~PVliVp~~~~~~~ 206 (232)
+...++.+++....+..=+..|++...--++|-||+-+. -|-+.+.+||++..-- .+. -..||=+||-++.+..
T Consensus 207 l~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsG-DGl~hEVlNGLl~R~D---~~~~~klPigiiP~GSGNal 281 (579)
T KOG1116|consen 207 LSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSG-DGLLHEVLNGLLERPD---WEAAVKLPIGIIPCGSGNAL 281 (579)
T ss_pred hhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecC-CcCHHHhhhccccccc---hhhHhcCceeEeecCCccHH
Confidence 344588899888887666888999988889999999864 5777777777765333 333 3599999998877654
No 174
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=32.38 E-value=3.4e+02 Score=23.61 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCCEEEEe
Q 026810 147 RERLCLEIERLSLSAVIMG 165 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G 165 (232)
.+.|...+++.++|+||+-
T Consensus 55 ~~e~~~~~~~~~~~~vi~~ 73 (351)
T TIGR03156 55 VEEIAELVEELEADLVIFD 73 (351)
T ss_pred HHHHHHHHHhcCCCEEEEC
Confidence 5566666666677766665
No 175
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=32.24 E-value=2.6e+02 Score=22.35 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=43.8
Q ss_pred CcceEEEEeeCC-----------chHHHHHHHHHhcCC-CEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 133 GFPYKIHIVKDH-----------DMRERLCLEIERLSL-SAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 133 ~~~v~~~~~~g~-----------~~~~~I~~~a~~~~~-dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
+..+++..+..+ -.++.|++..+.... |.|++...-...-.... +-+-+.+.+.....+||.+|+.
T Consensus 124 ~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP~~ml~~~~~~f--LDD~t~~el~~~lg~~v~vv~~ 201 (204)
T PF04459_consen 124 GLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLPDVMLRHGEGVF--LDDMTLEELEERLGVPVIVVRG 201 (204)
T ss_pred CCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEECHHHhcCCCCcc--CCCCcHHHHHHHhCCcEEEeCC
Confidence 566666655533 135667666655444 89999876544422330 3377888899999999999986
Q ss_pred C
Q 026810 201 P 201 (232)
Q Consensus 201 ~ 201 (232)
+
T Consensus 202 ~ 202 (204)
T PF04459_consen 202 P 202 (204)
T ss_pred C
Confidence 4
No 176
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=31.91 E-value=1.9e+02 Score=24.74 Aligned_cols=54 Identities=9% Similarity=0.062 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCc--ccccCCCccCchhHHHhccCCCcEEEEcCCCCCC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGA--EKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKD 205 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~--~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~~ 205 (232)
+....++.+++ +|+||+|..+.-. +..+ +...+. +.++.+++|++.|.+--.++
T Consensus 165 ~~~~a~~AI~~--AD~Iv~gPGSlyTSI~P~L---lv~gI~-eAi~~s~a~kV~v~N~~~~~ 220 (308)
T cd07187 165 ANPEALEAIEE--ADLIVYGPGSLYTSILPNL---LVKGIA-EAIRASKAPKVYICNLMTQP 220 (308)
T ss_pred CCHHHHHHHHh--CCEEEECCCccHHHhhhhc---CchhHH-HHHHhCCCCEEEEecCCCCC
Confidence 46677788877 9999999765211 1122 344444 45678899999998744433
No 177
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=31.84 E-value=2.1e+02 Score=26.21 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=33.2
Q ss_pred HHHHHHHHHhc----CCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 147 RERLCLEIERL----SLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~----~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.|.+..++. ++|.||+-.+..+.- +....+++..++|||+....
T Consensus 51 ~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a---------~~~i~~~~~l~~PvL~~~~q 100 (484)
T cd03557 51 PDEILAVCREANADDNCAGVITWMHTFSPA---------KMWIAGLTALQKPLLHLHTQ 100 (484)
T ss_pred HHHHHHHHHHccccCCccEEEEccCCCchH---------HHHHHHHHHcCCCEEEEccC
Confidence 56666666664 599999988765543 34445678889999999765
No 178
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=31.35 E-value=3.3e+02 Score=23.16 Aligned_cols=65 Identities=14% Similarity=0.013 Sum_probs=37.3
Q ss_pred CcceEEEEeeCCc----hHHHHHHHHHhcCCCEEEEeeCCCCc-ccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 133 GFPYKIHIVKDHD----MRERLCLEIERLSLSAVIMGSRGFGA-EKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 133 ~~~v~~~~~~g~~----~~~~I~~~a~~~~~dlIV~G~~~~~~-~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
++++.+++..|.+ -...++..+++.++|.|.+..+.... ..+. ..=.....+....++||+..-.
T Consensus 131 ~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~---~~~~~i~~i~~~~~ipvi~nGg 200 (319)
T TIGR00737 131 DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGE---ANWDIIARVKQAVRIPVIGNGD 200 (319)
T ss_pred CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCc---hhHHHHHHHHHcCCCcEEEeCC
Confidence 4666666654321 14467777788899999885432211 1111 1113445566667899888765
No 179
>PRK03670 competence damage-inducible protein A; Provisional
Probab=31.20 E-value=2e+02 Score=23.82 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=35.0
Q ss_pred hhCCcceEEEEeeCCchHHHHHHHHHh---cCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEE
Q 026810 130 KEAGFPYKIHIVKDHDMRERLCLEIER---LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (232)
Q Consensus 130 ~~~~~~v~~~~~~g~~~~~~I~~~a~~---~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVl 196 (232)
...|+.+....+.+++ .+.|.+..++ ..+|+||+. .|-|....- -+.+.+......|+.
T Consensus 30 ~~~G~~v~~~~iV~Dd-~~~I~~~l~~a~~~~~DlVItt-GGlGpt~dD------~T~eava~a~g~~l~ 91 (252)
T PRK03670 30 TEKGYWVRRITTVGDD-VEEIKSVVLEILSRKPEVLVIS-GGLGPTHDD------VTMLAVAEALGRELV 91 (252)
T ss_pred HHCCCEEEEEEEcCCC-HHHHHHHHHHHhhCCCCEEEEC-CCccCCCCC------chHHHHHHHhCCCCc
Confidence 3348899888888888 5656665443 247888876 444433322 244444444556544
No 180
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=31.10 E-value=1.3e+02 Score=27.02 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=55.9
Q ss_pred CcceEEEEeeCCc--------hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC
Q 026810 133 GFPYKIHIVKDHD--------MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204 (232)
Q Consensus 133 ~~~v~~~~~~g~~--------~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~ 204 (232)
+..+.--+..|+. ..+.|+..+++.++|++|.|.-=.-.-.+. .-|.++..|-....+|++.-=..+..
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~---acg~va~aV~e~~~IP~vt~My~ENp 119 (431)
T TIGR01918 43 DAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGV---ACGEICKVVQDKLNVPAVTSMYVENP 119 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHH---HHHHHHHHHHHhhCCCeEEEecccCh
Confidence 4566666666655 346799999999999999997532223333 45666777777799999987544431
Q ss_pred ---CCCCceEEecCCCCC
Q 026810 205 ---DDGEPLVKVKEPEKD 219 (232)
Q Consensus 205 ---~~~~~~~~~~~~~~~ 219 (232)
....-+..++.+.+.
T Consensus 120 gvd~yk~~vyIv~t~~sa 137 (431)
T TIGR01918 120 GVDMFKKDVYVMITGDSA 137 (431)
T ss_pred HHHHHhhCcEEEECCcch
Confidence 125556666666663
No 181
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=31.02 E-value=1.3e+02 Score=26.95 Aligned_cols=84 Identities=7% Similarity=0.021 Sum_probs=54.3
Q ss_pred CcceEEEEeeCCc--------hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC
Q 026810 133 GFPYKIHIVKDHD--------MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204 (232)
Q Consensus 133 ~~~v~~~~~~g~~--------~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~ 204 (232)
+..+.--+..|+. ..+.|+..+++.++|++|.|.-=.-.-.+. .-|.++..|-....+|++.-=..+..
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~---acg~va~aV~e~~~IP~vtaMy~ENp 119 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGM---AAGAITKAVQDELGIKAFTAMYEENP 119 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHH---HHHHHHHHHHHhhCCCeEEEecccCh
Confidence 4566666666655 346799999999999999997532223333 45666777777799999887544431
Q ss_pred ---CCCCceEEecCCCCC
Q 026810 205 ---DDGEPLVKVKEPEKD 219 (232)
Q Consensus 205 ---~~~~~~~~~~~~~~~ 219 (232)
....-+..++.+.+.
T Consensus 120 gvd~yk~~vyIv~t~~sa 137 (431)
T TIGR01917 120 GADMFKKEVYVIPTADSA 137 (431)
T ss_pred HHHHHhhCcEEEECCCch
Confidence 124455555555543
No 182
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=30.90 E-value=59 Score=28.20 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=34.5
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCC---cccccCCCccCchhH-HHhccCCCcEEEEcC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG---AEKRGSDGKLGSVSD-YCVHHCVCPVVVVRY 200 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~---~~~~~~~~~~gs~~~-~vl~~~~~PVliVp~ 200 (232)
..|+++.... +.-+. ...+...+|+|++|..+-. .+.. -.|...- -+.++.++||+++-+
T Consensus 204 ~~GI~vtlI~---Dsav~---~~m~~~~vd~VivGAd~v~~nG~v~n----kiGT~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 204 QEGIPATLIT---DSMAA---HLMKHGEVDAVIVGADRIAANGDTAN----KIGTYQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred HCCCCEEEEc---ccHHH---HHhcccCCCEEEEcccEEecCCCEee----hhhHHHHHHHHHHhCCCEEEecc
Confidence 3477765443 22122 2334457999999997632 2222 1344333 444678899999855
No 183
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.88 E-value=1.1e+02 Score=21.90 Aligned_cols=34 Identities=6% Similarity=0.007 Sum_probs=26.2
Q ss_pred eEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCC
Q 026810 136 YKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF 169 (232)
Q Consensus 136 v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~ 169 (232)
+++...-.+.+.+.+++.+.+.++|.|++.....
T Consensus 28 ~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~ 61 (122)
T cd02071 28 FEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSG 61 (122)
T ss_pred CEEEECCCCCCHHHHHHHHHHcCCCEEEEcccch
Confidence 4445555555688999999999999999987643
No 184
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=30.42 E-value=1.7e+02 Score=24.29 Aligned_cols=50 Identities=20% Similarity=0.105 Sum_probs=33.1
Q ss_pred chHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 145 DMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 145 ~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
++.+.+.+......+|.||+-....+.--.. .-.+.+-+.++.|||+=-.
T Consensus 164 ~~~~~v~dtver~~aDaVI~tG~~TG~~~d~------~el~~a~~~~~~pvlvGSG 213 (263)
T COG0434 164 SLEEAVKDTVERGLADAVIVTGSRTGSPPDL------EELKLAKEAVDTPVLVGSG 213 (263)
T ss_pred CHHHHHHHHHHccCCCEEEEecccCCCCCCH------HHHHHHHhccCCCEEEecC
Confidence 4567777778889999999876655443332 2344556667899887543
No 185
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=30.39 E-value=1.6e+02 Score=21.69 Aligned_cols=28 Identities=11% Similarity=-0.066 Sum_probs=22.0
Q ss_pred CchHHHHHHHHHhcCCCEEEEeeCCCCc
Q 026810 144 HDMRERLCLEIERLSLSAVIMGSRGFGA 171 (232)
Q Consensus 144 ~~~~~~I~~~a~~~~~dlIV~G~~~~~~ 171 (232)
+-+.+.+++.|.++++|+|.+.+--.+.
T Consensus 36 ~v~~e~~v~aa~~~~adiVglS~L~t~~ 63 (128)
T cd02072 36 LSPQEEFIDAAIETDADAILVSSLYGHG 63 (128)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccCC
Confidence 3358999999999999999997754333
No 186
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=30.15 E-value=1.1e+02 Score=22.59 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=45.9
Q ss_pred chHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCc--cCchhHHHhccCCCcEEEEcCCCCCC-CCCceEEecCCCCCCC
Q 026810 145 DMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGK--LGSVSDYCVHHCVCPVVVVRYPDDKD-DGEPLVKVKEPEKDDE 221 (232)
Q Consensus 145 ~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~--~gs~~~~vl~~~~~PVliVp~~~~~~-~~~~~~~~~~~~~~~~ 221 (232)
+-...+++.++...+|.||+-.- ..+.+. . ...+.+.+..+..+.|+++..+.... ....+..+.+.-.+-|
T Consensus 55 p~l~~ll~~~~~g~vd~vvv~~l--dRl~R~---~~d~~~~~~~l~~~~gv~l~~~~~~~d~~~~~~~~~~~~~~~ae~~ 129 (140)
T cd03770 55 PGFNRMIEDIEAGKIDIVIVKDM--SRLGRN---YLKVGLYMEILFPKKGVRFIAINDGVDSADGDDDFIPFKNILNEWY 129 (140)
T ss_pred HHHHHHHHHHHcCCCCEEEEecc--chhccC---HHHHHHHHHHHHhhcCcEEEEecCCcCCCCCCcchHHHHHHHHHHH
Confidence 34678889999999999888542 223222 1 01123333333488998887643221 1234455555555556
Q ss_pred chHHhhhccc
Q 026810 222 DDHVDRKLKD 231 (232)
Q Consensus 222 ~~~~~~~~~~ 231 (232)
.+.+.++++.
T Consensus 130 ~~~~~~~v~~ 139 (140)
T cd03770 130 AKDISRKIKA 139 (140)
T ss_pred HHHHHHHHhc
Confidence 6666666543
No 187
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=30.00 E-value=1.1e+02 Score=21.01 Aligned_cols=60 Identities=18% Similarity=0.099 Sum_probs=34.3
Q ss_pred hhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC
Q 026810 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204 (232)
Q Consensus 130 ~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~ 204 (232)
...++++++.... ...+.... .++|+|+++.+-+..+. ..+..+....+||.++++....
T Consensus 24 ~~~~~~~~v~~~~----~~~~~~~~--~~~Diil~~Pqv~~~~~---------~i~~~~~~~~~pv~~I~~~~Y~ 83 (96)
T cd05564 24 EKRGIDAEIEAVP----ESELEEYI--DDADVVLLGPQVRYMLD---------EVKKKAAEYGIPVAVIDMMDYG 83 (96)
T ss_pred HHCCCceEEEEec----HHHHHHhc--CCCCEEEEChhHHHHHH---------HHHHHhccCCCcEEEcChHhcc
Confidence 3346765554433 23333333 46999999976433222 2233345568999999875443
No 188
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=29.82 E-value=1.7e+02 Score=22.99 Aligned_cols=63 Identities=11% Similarity=-0.039 Sum_probs=37.5
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC---CCcEEEEcCC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC---VCPVVVVRYP 201 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~---~~PVliVp~~ 201 (232)
.|.++ ...-.+-+.+.+++.+++.++|+|.+........... ....+.+=... .++|++--..
T Consensus 109 ~G~~v--i~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~-----~~~i~~lr~~~~~~~~~i~vGG~~ 174 (201)
T cd02070 109 NGFEV--IDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGM-----KEVIEALKEAGLRDKVKVMVGGAP 174 (201)
T ss_pred CCCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHH-----HHHHHHHHHCCCCcCCeEEEECCc
Confidence 35554 3222344589999999999999999988654444332 33444443333 3555555443
No 189
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=29.53 E-value=1.2e+02 Score=24.54 Aligned_cols=37 Identities=14% Similarity=0.004 Sum_probs=31.0
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v 77 (232)
.++|.+++|+....+.|...+..++...|-.+.++..
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv~l 190 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAGFITKVIEI 190 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4789999999999999999999998878877665533
No 190
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=29.31 E-value=89 Score=27.26 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=36.3
Q ss_pred hhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCC---cccccCCCccCchhH-HHhccCCCcEEEEcCCC
Q 026810 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG---AEKRGSDGKLGSVSD-YCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 130 ~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~---~~~~~~~~~~gs~~~-~vl~~~~~PVliVp~~~ 202 (232)
...|+++.... +.- +.......++|+|++|..+-. .+... .|...- -+.++.++||+++-+..
T Consensus 203 ~~~GI~vtlI~---Dsa---~~~~M~~~~vd~VivGAd~I~~nG~v~Nk----iGT~~lAl~Ak~~~vPfyV~a~~~ 269 (344)
T PRK05720 203 YQAGIDVTVIT---DNM---AAHLMQTGKIDAVIVGADRIAANGDVANK----IGTYQLAIAAKYHGVPFYVAAPSS 269 (344)
T ss_pred HHCCCCEEEEc---ccH---HHHHhcccCCCEEEEcccEEecCCCEeeh----hhHHHHHHHHHHhCCCEEEecccc
Confidence 34477766543 221 223334457999999997632 22222 343333 34467889999986644
No 191
>PRK02929 L-arabinose isomerase; Provisional
Probab=29.02 E-value=2.2e+02 Score=26.29 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcC----CCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 147 RERLCLEIERLS----LSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 147 ~~~I~~~a~~~~----~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
.+.|.+.+++-+ +|.||+-.+..+.- +....+++..++|||+...
T Consensus 57 ~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a---------~~~i~~~~~l~~PvL~~~~ 105 (499)
T PRK02929 57 PDEITAVCREANYDDNCAGVITWMHTFSPA---------KMWIRGLSALQKPLLHLHT 105 (499)
T ss_pred HHHHHHHHHHccccCCCcEEEEccCCCchH---------HHHHHHHHHcCCCEEEEec
Confidence 555666666666 99999988765543 3444567888999999976
No 192
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=28.63 E-value=1.5e+02 Score=21.93 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=22.6
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHh--cCCCEEEEe
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIER--LSLSAVIMG 165 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~--~~~dlIV~G 165 (232)
.|+.+......+++ .+.|.+..++ .++|+||..
T Consensus 39 ~G~~v~~~~~v~Dd-~~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 39 AGFNVSRLGIVPDD-PEEIREILRKAVDEADVVLTT 73 (144)
T ss_pred CCCeEEEEeecCCC-HHHHHHHHHHHHhCCCEEEEC
Confidence 38888888778877 4545544332 269999987
No 193
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=28.56 E-value=1.9e+02 Score=19.41 Aligned_cols=49 Identities=12% Similarity=0.042 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC-CCcEEEEcCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRYPD 202 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~-~~PVliVp~~~ 202 (232)
........+...+|++++...-.. .... .+.+++-... .+|++++-...
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~-~~~~------~~~~~i~~~~~~~~ii~~t~~~ 81 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPD-GDGL------ELLEQIRQINPSIPIIVVTDED 81 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSS-SBHH------HHHHHHHHHTTTSEEEEEESST
T ss_pred HHHHHHHhcccCceEEEEEeeecc-cccc------ccccccccccccccEEEecCCC
Confidence 556667778899999999976433 2222 4566665544 58888886433
No 194
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=28.49 E-value=72 Score=25.96 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCcc
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGAE 172 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~~ 172 (232)
....+.+..++.++|.|++|+-|.+.+
T Consensus 162 l~~~~~~a~~edgAeaIiLGCAGms~l 188 (230)
T COG4126 162 LVIEAAEALKEDGAEAIILGCAGMSDL 188 (230)
T ss_pred HHHHHHHHhhhcCCCEEEEcCccHHHH
Confidence 345667778999999999999875543
No 195
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=28.16 E-value=4.7e+02 Score=23.93 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=46.4
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCCCCCCce
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPL 210 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~~~~~~~ 210 (232)
.++.+++.......-+..+++.+...++|.||+. .|-|.+.+.++++++.... -...++|+-++|.++.++..+.+
T Consensus 142 ~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~v-GGDGTlnEVvNGL~~~~~~--~~~~~~pLGiIPaGTgNdfArsL 217 (481)
T PLN02958 142 ADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCV-SGDGILVEVVNGLLEREDW--KTAIKLPIGMVPAGTGNGMAKSL 217 (481)
T ss_pred cCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEE-cCCCHHHHHHHHHhhCccc--cccccCceEEecCcCcchhhhhh
Confidence 3777777766654337777777767788987765 4456665552222211000 00236999999998888775543
No 196
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.15 E-value=1.4e+02 Score=24.84 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCCCCCCceEEec
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDDGEPLVKVK 214 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~~~~~~~~~~~ 214 (232)
.+++..+.+++++|+||=.+|..-. -+...+-.+++.+.+|.+-...+.+...+.-...++
T Consensus 55 ~e~l~~~l~e~~i~llIDATHPyAa-------~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~ 115 (257)
T COG2099 55 AEGLAAFLREEGIDLLIDATHPYAA-------RISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVA 115 (257)
T ss_pred HHHHHHHHHHcCCCEEEECCChHHH-------HHHHHHHHHHHHhCCcEEEEECCccccCCCceEEec
Confidence 8999999999999999999875321 235677788889999999998877766433333333
No 197
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=28.15 E-value=4.3e+02 Score=23.52 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=27.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 43 KIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 43 ~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
+|+|++.+--+|..++.++... |.+++.+|+..
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~ 33 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADV 33 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEec
Confidence 5899999999999998887653 77899999964
No 198
>PF13362 Toprim_3: Toprim domain
Probab=28.13 E-value=1.6e+02 Score=19.86 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=29.6
Q ss_pred CCcEEEEEecCChh--HHHHHHHHHHHhCCCCCEEEEEEE
Q 026810 40 ARRKIGVAVDLSDE--SAFAVRWAVHHYLRPGDAVILVHV 77 (232)
Q Consensus 40 ~~~~ILv~vD~s~~--s~~al~~A~~la~~~~~~l~ll~v 77 (232)
..++|+++.|.... ...+...+.+.+...+..+.++.-
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p 79 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP 79 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC
Confidence 57999999998888 788877777777777776665544
No 199
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=27.91 E-value=2.6e+02 Score=21.87 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCC-EEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 148 ERLCLEIERLSLS-AVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 148 ~~I~~~a~~~~~d-lIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
..+.+.+++...+ .+++|+. +-|-.+..+..+.++|.+++.+...
T Consensus 47 ~~l~~~i~~~~~~~~~liGSS-----------lGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSS-----------LGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEC-----------hHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 4455666665553 8899975 2233555666677888888876443
No 200
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=27.86 E-value=3.6e+02 Score=22.47 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.-.+.+.+++.++|.|++..........- -+-.--.+|+..+++||++...+.
T Consensus 82 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~---~i~~~~~~i~~~~~~pi~lYn~P~ 134 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVTPYYNKPTQE---GLYQHFKAIAEEVDLPIILYNVPS 134 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCHH---HHHHHHHHHHhcCCCCEEEEECcH
Confidence 33466888999999999987654322111 112234457777899999997654
No 201
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=27.77 E-value=1e+02 Score=26.78 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=35.1
Q ss_pred hhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhH-HHhccCCCcEEEEcC
Q 026810 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSD-YCVHHCVCPVVVVRY 200 (232)
Q Consensus 130 ~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~-~vl~~~~~PVliVp~ 200 (232)
...|+++.... ++-+. ......++|+|++|..+-..-....+ -.|...- -+.++.++||+++-+
T Consensus 193 ~~~GI~vtlI~---Dsa~~---~~M~~~~Vd~VivGAd~I~aNG~v~N-KiGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 193 AQEGIDHAIIA---DNAAG---YFMRKKEIDLVIVGADRIASNGDFAN-KIGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred HHCCCCEEEEc---ccHHH---HHhhhcCCCEEEECccEEecCCCEee-hhhHHHHHHHHHHcCCCEEEecc
Confidence 33477766543 22122 23344579999999976322111111 1343333 444678899999854
No 202
>PRK08462 biotin carboxylase; Validated
Probab=27.71 E-value=4.4e+02 Score=23.47 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=22.1
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~ 78 (232)
.+++||+ ++.++.+..+++.|.+ .|.++++++..
T Consensus 3 ~~k~ili-~~~g~~~~~~~~~~~~----~G~~~v~~~~~ 36 (445)
T PRK08462 3 EIKRILI-ANRGEIALRAIRTIQE----MGKEAIAIYST 36 (445)
T ss_pred CCCEEEE-ECCcHHHHHHHHHHHH----cCCCEEEEech
Confidence 4689998 5666666666665554 57776666544
No 203
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=27.64 E-value=3e+02 Score=21.50 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=28.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v 77 (232)
..+-|||.|..+.+..+.+|...+.. .|..+++++-
T Consensus 35 lDNTLv~wd~~~~tpe~~~W~~e~k~-~gi~v~vvSN 70 (175)
T COG2179 35 LDNTLVPWDNPDATPELRAWLAELKE-AGIKVVVVSN 70 (175)
T ss_pred ccCceecccCCCCCHHHHHHHHHHHh-cCCEEEEEeC
Confidence 45668899999999999999988544 7777776654
No 204
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=27.54 E-value=3.9e+02 Score=22.82 Aligned_cols=62 Identities=8% Similarity=0.092 Sum_probs=41.0
Q ss_pred CcceEEEEeeCCc---hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCc-----hhHHHhccCCCcEEEEcC
Q 026810 133 GFPYKIHIVKDHD---MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGS-----VSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 133 ~~~v~~~~~~g~~---~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs-----~~~~vl~~~~~PVliVp~ 200 (232)
++++.++...|.+ ....++..+++.++|+|.+-.+.+.. . ..|. ...++-++.++||+....
T Consensus 133 ~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~--~----y~g~~~~~~~i~~ik~~~~iPVi~nGd 202 (312)
T PRK10550 133 HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED--G----YRAEHINWQAIGEIRQRLTIPVIANGE 202 (312)
T ss_pred CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCcc--C----CCCCcccHHHHHHHHhhcCCcEEEeCC
Confidence 3677777766632 25578888899999999996554322 1 2232 355666777889888765
No 205
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=27.43 E-value=1.6e+02 Score=22.04 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=22.4
Q ss_pred cCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 157 LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 157 ~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
.++|+||+-..+ +..... ..+.....++....+||++|=.
T Consensus 98 ~~~D~viid~~g-~~~~~~---~~~~~~~dl~~~~~~~vilV~~ 137 (166)
T TIGR00347 98 QKYDFVLVEGAG-GLCVPI---TEEYTTADLIKLLQLPVILVVR 137 (166)
T ss_pred hcCCEEEEEcCC-ccccCC---CCCCcHHHHHHHhCCCEEEEEC
Confidence 457888877665 222222 2222344566667777777753
No 206
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=27.13 E-value=84 Score=25.73 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK 204 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~ 204 (232)
.+.+++.+.+.+.|.|++|... ... -+..+...+-+..+.||++.|.....
T Consensus 21 ~~~~~~~~~~~gtDai~VGGS~----~~~---~~d~vv~~ik~~~~lPvilfPg~~~~ 71 (230)
T PF01884_consen 21 PEEALEAACESGTDAIIVGGSD----TGV---TLDNVVALIKRVTDLPVILFPGSPSQ 71 (230)
T ss_dssp HHHHHHHHHCTT-SEEEEE-ST----HCH---HHHHHHHHHHHHSSS-EEEETSTCCG
T ss_pred cHHHHHHHHhcCCCEEEECCCC----Ccc---chHHHHHHHHhcCCCCEEEeCCChhh
Confidence 4556666688899999999775 111 22345555555589999999875443
No 207
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.03 E-value=1.8e+02 Score=21.58 Aligned_cols=34 Identities=9% Similarity=-0.077 Sum_probs=25.4
Q ss_pred EEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCC
Q 026810 137 KIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG 170 (232)
Q Consensus 137 ~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~ 170 (232)
++...-.+-+.+.+++.+.+.++|+|.+......
T Consensus 33 eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~ 66 (137)
T PRK02261 33 EVINLGVMTSQEEFIDAAIETDADAILVSSLYGH 66 (137)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCCEEEEcCcccc
Confidence 3444433446899999999999999999876543
No 208
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=26.31 E-value=2.9e+02 Score=22.98 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
+-...+.+++.++|.+++...-......- -+-.--..|+..++.|+++...+
T Consensus 85 ~i~~a~~a~~~Gad~v~v~~P~~~~~s~~---~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 85 AIELARHAQDAGADAVLVIPPYYFKPSQE---ELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp HHHHHHHHHHTT-SEEEEEESTSSSCCHH---HHHHHHHHHHHHSSSEEEEEEBH
T ss_pred HHHHHHHHhhcCceEEEEeccccccchhh---HHHHHHHHHHhhcCCCEEEEECC
Confidence 44667788999999988776543322211 11233456777889999999764
No 209
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.29 E-value=2.6e+02 Score=22.26 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=32.0
Q ss_pred CcceEEEEeeCCc-hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 133 GFPYKIHIVKDHD-MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 133 ~~~v~~~~~~g~~-~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
|+.+.+.....+. -...+++.....++|.||+........ .... +.+...++||+++...
T Consensus 30 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~--------~~~l-~~~~~~~iPvV~~~~~ 90 (275)
T cd06317 30 GVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAY--------IPGL-RKAKQAGIPVVITNSN 90 (275)
T ss_pred CCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCcccc--------HHHH-HHHHHCCCcEEEeCCC
Confidence 6665554333222 122344545567899998865321111 1122 3356678999988653
No 210
>PRK11058 GTPase HflX; Provisional
Probab=26.27 E-value=4.8e+02 Score=23.42 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=24.7
Q ss_pred cEEEEEecCChh-HHHHHHHHHHHhCCCCCEEEEEEEe
Q 026810 42 RKIGVAVDLSDE-SAFAVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 42 ~~ILv~vD~s~~-s~~al~~A~~la~~~~~~l~ll~v~ 78 (232)
+-|||++..... ....++-...|+...|.++.-..+.
T Consensus 10 ~~~l~~~~~~~~~~~~~~~El~~L~~~~g~~v~~~~~q 47 (426)
T PRK11058 10 QAVLVHIYFSQDKDMEDLQEFESLVSSAGVEALQVITG 47 (426)
T ss_pred eEEEEEecCCCCchhhhHHHHHHHHHHCCCEEEEEEEE
Confidence 568888865432 3455777888888888876664444
No 211
>PRK06801 hypothetical protein; Provisional
Probab=26.23 E-value=1.8e+02 Score=24.63 Aligned_cols=85 Identities=13% Similarity=-0.023 Sum_probs=56.5
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC--------
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK-------- 204 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~-------- 204 (232)
+..|-.--...-....++++.|++.+.-+|+..+.+.....+. ..+......+..++++||.+==.+...
T Consensus 17 ~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~--~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai 94 (286)
T PRK06801 17 GYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISL--ESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRAL 94 (286)
T ss_pred CceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 4444333344444699999999999999999988765433221 035677788888999998776554433
Q ss_pred CCCCceEEecCCCCC
Q 026810 205 DDGEPLVKVKEPEKD 219 (232)
Q Consensus 205 ~~~~~~~~~~~~~~~ 219 (232)
+.+.-.+.++++..+
T Consensus 95 ~~GftSVm~D~S~l~ 109 (286)
T PRK06801 95 RLGFSSVMFDGSTLE 109 (286)
T ss_pred HhCCcEEEEcCCCCC
Confidence 345566666766544
No 212
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=26.07 E-value=3.1e+02 Score=21.09 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=23.9
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHh--cCCCEEEEeeCCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIER--LSLSAVIMGSRGFG 170 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~--~~~dlIV~G~~~~~ 170 (232)
..|+.+......+++ .+.|.+..++ ..+|+||.. .|-+
T Consensus 30 ~~G~~v~~~~~v~Dd-~~~I~~~l~~~~~~~dlVItt-GG~G 69 (170)
T cd00885 30 ELGIEVYRVTVVGDD-EDRIAEALRRASERADLVITT-GGLG 69 (170)
T ss_pred HCCCEEEEEEEeCCC-HHHHHHHHHHHHhCCCEEEEC-CCCC
Confidence 348888887788887 4444444332 358888876 4433
No 213
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=26.07 E-value=1.7e+02 Score=19.61 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCc--ccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGA--EKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~--~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
..+.|.+..++.+++.|.+|..+.-. .... +.-...+.+-++.++||.++...
T Consensus 39 ~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~---~~~~l~~~l~~~~~~pv~~~nDa 93 (99)
T smart00732 39 DAARLKKLIKKYQPDLIVIGLPLNMNGTASRE---TEEAFAELLKERFNLPVVLVDER 93 (99)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHH---HHHHHHHHHHHhhCCcEEEEeCC
Confidence 46777777777789999999765321 0000 00122333444578999998764
No 214
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=25.93 E-value=68 Score=24.30 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCCEEEEeeCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
.+.|.++.+++++++|++|..+
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g~~ 73 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGGNS 73 (150)
T ss_dssp HHHHHHHHHHH--SEEEE--SS
T ss_pred HHHHHHHHHHcCCeEEEEcCCC
Confidence 4566777888888888886543
No 215
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=25.89 E-value=1.8e+02 Score=21.78 Aligned_cols=57 Identities=12% Similarity=0.014 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCccccc-CCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRG-SDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~-~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
....|.+.+++++++.||+|-.-...-... .....-..++.+-.+.++||..+-+..
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DERl 98 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDERL 98 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 488999999999999999998642221111 000122344555666789999987643
No 216
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=25.85 E-value=43 Score=27.94 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=28.6
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCC---CCcccccCCCccCchh-HHHhccCCCcEEEEcC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRG---FGAEKRGSDGKLGSVS-DYCVHHCVCPVVVVRY 200 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~---~~~~~~~~~~~~gs~~-~~vl~~~~~PVliVp~ 200 (232)
|+++....-. .+....+. ++|.|++|... .|.+... .|+.. .-+.++.++||+++-+
T Consensus 158 gi~v~~i~d~------~~~~~m~~-~vd~VliGad~v~~nG~v~nk----~Gt~~~a~~Ak~~~vPv~v~~~ 218 (282)
T PF01008_consen 158 GIPVTLIPDS------AVGYVMPR-DVDKVLIGADAVLANGGVVNK----VGTLQLALAAKEFNVPVYVLAE 218 (282)
T ss_dssp T-EEEEE-GG------GHHHHHHC-TESEEEEE-SEEETTS-EEEE----TTHHHHHHHHHHTT-EEEEE--
T ss_pred ceeEEEEech------HHHHHHHH-hCCeeEEeeeEEecCCCEeeh----hhHHHHHHHHHhhCCCEEEEcc
Confidence 6665554422 13333443 69999999974 2222222 23333 3455668999999954
No 217
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=25.79 E-value=4.7e+02 Score=23.19 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=26.5
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 44 ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
|+|++.+--+|..++.++.+. .+.+++.+|+-..
T Consensus 1 Vvva~SGGlDSsvll~~l~e~---~~~eV~av~~d~G 34 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEK---GGYEVIAVTADVG 34 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHh---CCCeEEEEEEECC
Confidence 578899999999888888663 3458999998743
No 218
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=25.72 E-value=5.2e+02 Score=23.63 Aligned_cols=71 Identities=14% Similarity=0.079 Sum_probs=40.3
Q ss_pred HHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 122 AADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 122 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
+..+...+...|++ ..+..|++ ..+|.+++++.+++-|+-...- ....+. .-....+-+..-.+-+..+..
T Consensus 57 L~~L~~~L~~~gi~--L~v~~~~~-~~~l~~~~~~~~~~~v~~n~~~-~~~~~~----rD~al~~~l~~~gi~~~~~~d 127 (461)
T COG0415 57 LQALQQSLAELGIP--LLVREGDP-EQVLPELAKQLAATTVFWNRDY-EEWERQ----RDAALAQPLTEVGIAVHSFWD 127 (461)
T ss_pred HHHHHHHHHHcCCc--eEEEeCCH-HHHHHHHHHHhCcceEEeeeee-chhHHH----HHHHHHHHHHhcCceEEEecc
Confidence 33344444444544 56666764 9999999999998888777553 322221 122233444444555555444
No 219
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=25.54 E-value=2.7e+02 Score=20.31 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFG 170 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~ 170 (232)
.+.+.+...+ +|.||+++.-+.
T Consensus 61 ~~~~~~~l~~--aD~iI~~sP~y~ 82 (152)
T PF03358_consen 61 VQELYDKLKE--ADGIIFASPVYN 82 (152)
T ss_dssp HHHHHHHHHH--SSEEEEEEEEBT
T ss_pred HHHHHhceec--CCeEEEeecEEc
Confidence 4566666666 999999997543
No 220
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.36 E-value=1.7e+02 Score=24.70 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=52.7
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC--------
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK-------- 204 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~-------- 204 (232)
+..+-.--+.+.....++++.|++.+.-+|+..+.+.....+. ..+........+++++||.+==.+...
T Consensus 17 ~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~--~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai 94 (284)
T PRK12857 17 GYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGI--EYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCI 94 (284)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 4444444444555699999999999999999887754322121 024556677888899998876544432
Q ss_pred CCCCceEEecCCC
Q 026810 205 DDGEPLVKVKEPE 217 (232)
Q Consensus 205 ~~~~~~~~~~~~~ 217 (232)
+.+.--+.++++.
T Consensus 95 ~~GftSVM~DgS~ 107 (284)
T PRK12857 95 RNGFTSVMIDGSK 107 (284)
T ss_pred HcCCCeEEEeCCC
Confidence 2344555566554
No 221
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=25.26 E-value=88 Score=27.24 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=26.5
Q ss_pred CCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 159 LSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 159 ~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.|+||+|+. ++|++...++.....-|+||-..
T Consensus 2 fd~lIVGaG-----------lsG~V~A~~a~~~gk~VLIvekR 33 (374)
T COG0562 2 FDYLIVGAG-----------LSGAVIAEVAAQLGKRVLIVEKR 33 (374)
T ss_pred CcEEEECCc-----------hhHHHHHHHHHHcCCEEEEEecc
Confidence 588999964 77889888888889999999653
No 222
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=25.19 E-value=4.3e+02 Score=22.98 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=33.9
Q ss_pred CcceEEEEeeCC------chHHHHHHHHHhcCC----CEEE-EeeCCCCcccccCCCccCchhHHHh--ccCCCcEEEEc
Q 026810 133 GFPYKIHIVKDH------DMRERLCLEIERLSL----SAVI-MGSRGFGAEKRGSDGKLGSVSDYCV--HHCVCPVVVVR 199 (232)
Q Consensus 133 ~~~v~~~~~~g~------~~~~~I~~~a~~~~~----dlIV-~G~~~~~~~~~~~~~~~gs~~~~vl--~~~~~PVliVp 199 (232)
++.+...+..+. ...+.+.+...+.++ |+|| +|... .+.++.-+. ....+|++.||
T Consensus 53 g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~-----------v~D~ak~~A~~~~rg~p~i~VP 121 (354)
T cd08199 53 NIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGV-----------LTDVAGLAASLYRRGTPYVRIP 121 (354)
T ss_pred CCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcH-----------HHHHHHHHHHHhcCCCCEEEEc
Confidence 666665444331 135566666677777 9888 55332 223333333 34479999999
Q ss_pred CCC
Q 026810 200 YPD 202 (232)
Q Consensus 200 ~~~ 202 (232)
...
T Consensus 122 TT~ 124 (354)
T cd08199 122 TTL 124 (354)
T ss_pred Ccc
Confidence 853
No 223
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=25.16 E-value=4.4e+02 Score=22.57 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=39.4
Q ss_pred CcceEEEEeeCCch----HHHHHHHHHhcCCCEEEEeeCCCCccc-ccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 133 GFPYKIHIVKDHDM----RERLCLEIERLSLSAVIMGSRGFGAEK-RGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 133 ~~~v~~~~~~g~~~----~~~I~~~a~~~~~dlIV~G~~~~~~~~-~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
++++.+....|.+. ...++..+++.++|.|.+-.+.+.... +. ..=....++.+..++||+....
T Consensus 133 d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~---a~~~~i~~ik~~~~iPVI~nGg 202 (321)
T PRK10415 133 DVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE---AEYDSIRAVKQKVSIPVIANGD 202 (321)
T ss_pred CCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCC---cChHHHHHHHHhcCCcEEEeCC
Confidence 45677766665431 446777788889999988655432211 11 1113445666677899888765
No 224
>PRK03673 hypothetical protein; Provisional
Probab=25.00 E-value=3.2e+02 Score=24.35 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=37.1
Q ss_pred hhCCcceEEEEeeCCchHHHHHHHHHh--cCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 130 KEAGFPYKIHIVKDHDMRERLCLEIER--LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 130 ~~~~~~v~~~~~~g~~~~~~I~~~a~~--~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
...|+.+......+++ .+.|.+..++ ..+|+||+-. |-|....- -+.+.+.+...+|+..-
T Consensus 31 ~~~G~~v~~~~~v~D~-~~~i~~~l~~a~~~~DlVI~tG-GlGpt~dD------~t~~avA~a~g~~L~~d 93 (396)
T PRK03673 31 FHQGLPLSRRNTVGDN-LDALVAILRERSQHADVLIVNG-GLGPTSDD------LSALAAATAAGEGLVLH 93 (396)
T ss_pred HHCCCEEEEEEEcCCC-HHHHHHHHHHHhccCCEEEEcC-CCCCCCcc------cHHHHHHHHcCCCceeC
Confidence 3448999999999988 6656665433 2578777653 34443332 24455555566666543
No 225
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.91 E-value=2.6e+02 Score=21.35 Aligned_cols=44 Identities=11% Similarity=0.023 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
-.+.|++.+++.++|+|++|-... ..+. ...+..+..+.+|++.
T Consensus 89 ~~~~i~~~I~~~~pdiv~vglG~P--kQE~-------~~~~~~~~l~~~v~i~ 132 (172)
T PF03808_consen 89 EEEAIINRINASGPDIVFVGLGAP--KQER-------WIARHRQRLPAGVIIG 132 (172)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCC--HHHH-------HHHHHHHHCCCCEEEE
Confidence 388999999999999999997532 2222 3344555566665554
No 226
>PLN02828 formyltetrahydrofolate deformylase
Probab=24.80 E-value=4.2e+02 Score=22.23 Aligned_cols=38 Identities=16% Similarity=0.064 Sum_probs=28.3
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~ 78 (232)
...||+|-+.++..+..+|-++.+- ...+++|.++-..
T Consensus 69 ~~~riavlvSg~g~nl~~ll~~~~~-g~l~~eI~~ViSn 106 (268)
T PLN02828 69 PKYKIAVLASKQDHCLIDLLHRWQD-GRLPVDITCVISN 106 (268)
T ss_pred CCcEEEEEEcCCChhHHHHHHhhhc-CCCCceEEEEEeC
Confidence 4578999999999999998888764 3356666655443
No 227
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=24.63 E-value=1.9e+02 Score=24.49 Aligned_cols=83 Identities=6% Similarity=0.097 Sum_probs=53.6
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC--------
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK-------- 204 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~-------- 204 (232)
+..|-.--........++++.|++.+.-+|+..+.+.-...+. ..+......+.+.+++||.+==.+...
T Consensus 15 ~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~--~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai 92 (282)
T TIGR01858 15 GYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGT--EYIVALCSAASTTYNMPLALHLDHHESLDDIRQKV 92 (282)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 4444444444445699999999999999999887754322221 024567778888999999876444432
Q ss_pred CCCCceEEecCCC
Q 026810 205 DDGEPLVKVKEPE 217 (232)
Q Consensus 205 ~~~~~~~~~~~~~ 217 (232)
+.+.--+.++++.
T Consensus 93 ~~GFtSVM~DgS~ 105 (282)
T TIGR01858 93 HAGVRSAMIDGSH 105 (282)
T ss_pred HcCCCEEeecCCC
Confidence 2345555666554
No 228
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=24.35 E-value=6e+02 Score=23.92 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=52.9
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
...+|+|.-|..-+...+-.......++.|..-...+ ++.+...+ |+. .....+.+.
T Consensus 68 ~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~-IP~R~~eG--YGl------------~~~~i~~~~-------- 124 (575)
T PRK11070 68 EGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYL-VPNRFEDG--YGL------------SPEVVDQAH-------- 124 (575)
T ss_pred CCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEE-eCCCCcCC--CCC------------CHHHHHHHH--------
Confidence 3478999988777666665555666666666322222 23221111 111 111111111
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCC
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
..+...-+-+-.|-. ....+++|++.++|+||..+|.
T Consensus 125 -----------~~~~~LiItvD~Gi~-~~e~i~~a~~~gidvIVtDHH~ 161 (575)
T PRK11070 125 -----------ARGAQLIVTVDNGIS-SHAGVAHAHALGIPVLVTDHHL 161 (575)
T ss_pred -----------hcCCCEEEEEcCCcC-CHHHHHHHHHCCCCEEEECCCC
Confidence 115555555555655 6667788999999999999774
No 229
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=24.32 E-value=75 Score=24.62 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=31.3
Q ss_pred HhcCCCEEEEeeCCCCcccccCCCccCchhHHHh-----c--cCCCcEEEEcCCC
Q 026810 155 ERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV-----H--HCVCPVVVVRYPD 202 (232)
Q Consensus 155 ~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl-----~--~~~~PVliVp~~~ 202 (232)
+--.+|++++..-..+...+. .+| .++.++ + ...+||+|||...
T Consensus 85 qlGkYD~llvaPaTsNTvAKI---a~G-IADtLVTNAVaqa~Kg~VPvyivP~D~ 135 (187)
T COG1036 85 QLGKYDFLLVAPATSNTVAKI---AYG-IADTLVTNAVAQAGKGKVPVYIVPVDY 135 (187)
T ss_pred ecccccEEEEcccccchHHHH---Hhh-hHHHHHHHHHHHhcCCCCcEEEecccc
Confidence 456799999998887877776 554 444443 3 3569999999643
No 230
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=24.29 E-value=2.6e+02 Score=23.66 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=27.1
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
.++++.-..+.-..-.+.|....+++.+|++|+-.|.
T Consensus 127 l~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 127 IGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred hCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 3666655444444457789999999999999998764
No 231
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=24.22 E-value=1.8e+02 Score=24.54 Aligned_cols=83 Identities=8% Similarity=0.137 Sum_probs=52.6
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC--------
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK-------- 204 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~-------- 204 (232)
+..+-.--........++++.|++.+.-+|+.-+.+....... ..+........+.+++||.+==.+...
T Consensus 17 ~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~--~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai 94 (284)
T PRK12737 17 GYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGT--DYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKV 94 (284)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 4444444444445699999999999999999877654322111 034566778888899998876444432
Q ss_pred CCCCceEEecCCC
Q 026810 205 DDGEPLVKVKEPE 217 (232)
Q Consensus 205 ~~~~~~~~~~~~~ 217 (232)
+.+..-+.++++.
T Consensus 95 ~~GftSVMiDgS~ 107 (284)
T PRK12737 95 RAGIRSVMIDGSH 107 (284)
T ss_pred HcCCCeEEecCCC
Confidence 2344555666554
No 232
>PRK04527 argininosuccinate synthase; Provisional
Probab=24.18 E-value=5.2e+02 Score=23.12 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=28.7
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
.++|+|++.+--+|..++.++.. .|.+++.+++-.
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e----~G~~Viavt~d~ 36 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE----RGYAVHTVFADT 36 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH----cCCcEEEEEEEe
Confidence 47899999999999999888766 367888888864
No 233
>PRK08417 dihydroorotase; Provisional
Probab=23.95 E-value=1.5e+02 Score=25.94 Aligned_cols=25 Identities=8% Similarity=-0.152 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 55 AFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 55 ~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
..++..++.+|+..+++++++|+..
T Consensus 181 ~~~v~~~~~la~~~~~~lhi~hvS~ 205 (386)
T PRK08417 181 TKEVAKMKELAKFYKNKVLFDTLAL 205 (386)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 3468999999999999999999985
No 234
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=23.90 E-value=2.3e+02 Score=24.77 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCEEE-EeeC
Q 026810 147 RERLCLEIERLSLSAVI-MGSR 167 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV-~G~~ 167 (232)
.+.+.+.+++.++|.|| +|..
T Consensus 72 v~~~~~~~~~~~~d~IIaiGGG 93 (374)
T cd08189 72 VEAGLALYRENGCDAILAVGGG 93 (374)
T ss_pred HHHHHHHHHhcCCCEEEEeCCc
Confidence 55777888889999887 6643
No 235
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=23.89 E-value=1.8e+02 Score=21.55 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=34.0
Q ss_pred hCCcceEEEEeeCCc----hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCCCC
Q 026810 131 EAGFPYKIHIVKDHD----MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKDD 206 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~----~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~~~ 206 (232)
..++.+...+..|+. ..+.|--++++.+...|++=-.+-+.-.++ + ....++.++ +||++++.+....+
T Consensus 23 ~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f----~-~~~~~a~~~--KPVv~lk~Grt~~g 95 (138)
T PF13607_consen 23 DRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGDGRRF----L-EAARRAARR--KPVVVLKAGRTEAG 95 (138)
T ss_dssp HTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-HHHH----H-HHHHHHCCC--S-EEEEE-------
T ss_pred HcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCCHHHH----H-HHHHHHhcC--CCEEEEeCCCchhh
Confidence 347888888888865 355565666777788888877665544443 2 344444444 99999998766555
Q ss_pred CC
Q 026810 207 GE 208 (232)
Q Consensus 207 ~~ 208 (232)
.+
T Consensus 96 ~~ 97 (138)
T PF13607_consen 96 AR 97 (138)
T ss_dssp --
T ss_pred hh
Confidence 43
No 236
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=23.89 E-value=2.4e+02 Score=20.43 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=20.4
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHh--cCCCEEEEe
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIER--LSLSAVIMG 165 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~--~~~dlIV~G 165 (232)
..+..+....+..++ .+.|.+..++ ..+|+||..
T Consensus 29 ~~G~~~~~~~~v~Dd-~~~I~~~l~~~~~~~dliitt 64 (135)
T smart00852 29 ELGIEVTRYVIVPDD-KEAIKEALREALERADLVITT 64 (135)
T ss_pred HCCCeEEEEEEeCCC-HHHHHHHHHHHHhCCCEEEEc
Confidence 347777766666666 4444444332 258987775
No 237
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=23.82 E-value=2.4e+02 Score=23.92 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=27.1
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
.++++.-..+.-..-.+.|.+..+++..|+||+-.|.
T Consensus 128 l~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 128 LGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred cCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 3666655555444456789999999999999998764
No 238
>PRK00211 sulfur relay protein TusC; Validated
Probab=23.79 E-value=2.5e+02 Score=20.22 Aligned_cols=37 Identities=3% Similarity=-0.006 Sum_probs=25.8
Q ss_pred cEEEEEec----CChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 42 RKIGVAVD----LSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 42 ~~ILv~vD----~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
++|++-+. +++.+..+++.|+..+.. +.++.++..-+
T Consensus 2 ~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~-~~~v~vff~~D 42 (119)
T PRK00211 2 KRIAFVFRQAPHGTASGREGLDALLATSAF-TEDIGVFFIDD 42 (119)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcc-cCCeeEEEEhh
Confidence 56777776 456677888888886664 44787777754
No 239
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.70 E-value=1.4e+02 Score=21.08 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=31.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
..+.+++.+..|-.+...++ +++.|+..|+++..+.-.+.
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~-~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 45 DEDTLVIAISQSGETADTLA-ALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHH-HHHHHHHcCCeEEEEECCCC
Confidence 46789999999999988766 66668888998877776543
No 240
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=23.62 E-value=1.7e+02 Score=22.52 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
...|++.+++.++|+|++|-.. +-.+. ...+...+.+.+|++.
T Consensus 88 ~~~i~~~I~~~~pdiv~vglG~--PkQE~-------~~~~~~~~l~~~v~~~ 130 (171)
T cd06533 88 EEEIIERINASGADILFVGLGA--PKQEL-------WIARHKDRLPVPVAIG 130 (171)
T ss_pred HHHHHHHHHHcCCCEEEEECCC--CHHHH-------HHHHHHHHCCCCEEEE
Confidence 4568999999999999999643 22333 3344555567776664
No 241
>PLN02417 dihydrodipicolinate synthase
Probab=23.61 E-value=4.3e+02 Score=21.99 Aligned_cols=51 Identities=10% Similarity=0.073 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
+-.+.+.+++.++|.+++..........- -+-.--..|+..+ ||+++..+.
T Consensus 85 ~i~~a~~a~~~Gadav~~~~P~y~~~~~~---~i~~~f~~va~~~--pi~lYn~P~ 135 (280)
T PLN02417 85 AIHATEQGFAVGMHAALHINPYYGKTSQE---GLIKHFETVLDMG--PTIIYNVPG 135 (280)
T ss_pred HHHHHHHHHHcCCCEEEEcCCccCCCCHH---HHHHHHHHHHhhC--CEEEEEChh
Confidence 44566778899999999987643322111 1112223455544 999997653
No 242
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=23.49 E-value=2.1e+02 Score=23.16 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=20.5
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~ 167 (232)
+.++.+ .+.|+ +...-+..+.+.++|.+|+|+.
T Consensus 169 ~~~~~I-eVDGG-I~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 169 GKPIRL-EIDGG-VKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred CCCeeE-EEECC-CCHHHHHHHHHcCCCEEEEChh
Confidence 444333 34444 3444555667789999999964
No 243
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=23.43 E-value=5.4e+02 Score=23.07 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
+..+.+.++..++|.||+-....+. ++..-.++...++||++.....
T Consensus 52 ~~~~~~~~~~~~~d~ii~~~~tf~~---------~~~~~~~~~~~~~Pvll~a~~~ 98 (452)
T cd00578 52 ARKAAEEFNEANCDGLIVWMHTFGP---------AKMWIAGLSELRKPVLLLATQF 98 (452)
T ss_pred HHHHHHHHhhcCCcEEEEccccccc---------HHHHHHHHHhcCCCEEEEeCCC
Confidence 5566677888899999987664332 2334445667899999997654
No 244
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=23.40 E-value=3.9e+02 Score=21.35 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 148 ERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 148 ~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
..++...++.++|.|++........... ..-....++...++.||+..-.
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g---~~~~~~~~i~~~~~ipvia~GG 205 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG---YDLELIKTVSDAVSIPVIALGG 205 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC---CCHHHHHHHHhhCCCCEEEECC
Confidence 4566777888999888877544332222 3335677888888999998864
No 245
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=23.26 E-value=1.2e+02 Score=25.88 Aligned_cols=52 Identities=15% Similarity=0.058 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCC-cccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFG-AEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~-~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
+....++..++ +|+||+|..+.- .+--. +.-.-..+.++.+++|++.|.+--
T Consensus 173 ~~p~~l~AI~~--AD~IiigPgs~~TSI~P~---L~v~gi~~Ai~~s~a~kV~V~ni~ 225 (300)
T PF01933_consen 173 ANPEALEAIEE--ADLIIIGPGSLYTSIIPN---LLVPGIREAIRESKAPKVYVSNIM 225 (300)
T ss_dssp B-HHHHHHHHH---SEEEE-SS-CCCCCHHH---HTSHHHHHHHHHSSSEEEEE-SSB
T ss_pred CCHHHHHHHHh--CCEEEEcCCCchhhhccc---ccchhHHHHHHhCCCCEEEEcCCC
Confidence 46677788887 999999986522 11122 222224456778889999997643
No 246
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=22.90 E-value=1.5e+02 Score=18.82 Aligned_cols=26 Identities=12% Similarity=-0.002 Sum_probs=21.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCC
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLR 67 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~ 67 (232)
++|.++.|.+...+.+..+..+.+..
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~~ 73 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLKP 73 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhhh
Confidence 67999999999998888877776554
No 247
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=22.89 E-value=3.2e+02 Score=22.33 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=20.2
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~ 167 (232)
+.++... +.|+- ...-+..+.+.++|.+|+|+.
T Consensus 167 ~~~~~Ie-VDGGI-~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 167 GLEYLIE-VDGSC-NQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred CCCeEEE-EECCC-CHHHHHHHHHcCCCEEEEChH
Confidence 5454444 44443 444445556679999999964
No 248
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.88 E-value=5.8e+02 Score=23.19 Aligned_cols=95 Identities=19% Similarity=0.142 Sum_probs=59.3
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (232)
--.+|++=+|-..-.+-..|..+-+ .+-.+.++.+-.-++ .+.+.++.
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~Rp----------------------AA~eQL~~--------- 149 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRP----------------------AAIEQLKQ--------- 149 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCCh----------------------HHHHHHHH---------
Confidence 3456778899888888888888777 777777777643211 11222222
Q ss_pred HHHhhhhhhhCCcceEEEEeeCCch---HHHHHHHHHhcCCCEEEEeeCCCCccccc
Q 026810 122 AADLARPLKEAGFPYKIHIVKDHDM---RERLCLEIERLSLSAVIMGSRGFGAEKRG 175 (232)
Q Consensus 122 ~~~~~~~~~~~~~~v~~~~~~g~~~---~~~I~~~a~~~~~dlIV~G~~~~~~~~~~ 175 (232)
+.. +-++++-.. ..+.+| +..-++.+++..+|+|++-+.||.....-
T Consensus 150 ---La~---q~~v~~f~~-~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~ 199 (451)
T COG0541 150 ---LAE---QVGVPFFGS-GTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEE 199 (451)
T ss_pred ---HHH---HcCCceecC-CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHH
Confidence 111 114443333 223333 46667888999999999999998776655
No 249
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=22.64 E-value=2.6e+02 Score=24.52 Aligned_cols=70 Identities=17% Similarity=0.031 Sum_probs=45.3
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccc---cCCCc------------cCchhHHHhccCCCcEEE
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKR---GSDGK------------LGSVSDYCVHHCVCPVVV 197 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~---~~~~~------------~gs~~~~vl~~~~~PVli 197 (232)
+..|-.--+.......+|++.|++.+..+|+..+.+...... + . . +......+.+++++||.+
T Consensus 20 ~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~-~-~~~~~~~~~~~~~~~~~v~~~A~~~~VPVal 97 (350)
T PRK09197 20 GFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGV-K-DDGQGAAVLGAIAGAKHVHEVAEHYGVPVIL 97 (350)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccc-c-ccchhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 444444444455569999999999999999988765332211 1 0 1 335566778889999876
Q ss_pred EcCCCCC
Q 026810 198 VRYPDDK 204 (232)
Q Consensus 198 Vp~~~~~ 204 (232)
==.+...
T Consensus 98 HLDHg~~ 104 (350)
T PRK09197 98 HTDHCAK 104 (350)
T ss_pred ECCCCCC
Confidence 5444433
No 250
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=22.51 E-value=1.3e+02 Score=23.53 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=27.5
Q ss_pred HHHHHHHH----hcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEE
Q 026810 148 ERLCLEIE----RLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (232)
Q Consensus 148 ~~I~~~a~----~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVl 196 (232)
+.+.+.++ +.++|.||+|+.+...+. ...+.+....+.||+
T Consensus 161 ~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~--------~~~~~l~~~~gipVi 205 (216)
T PF01177_consen 161 EILAEAARELIKEDGADAIILGCTHLPLLL--------GAIEALEEELGIPVI 205 (216)
T ss_dssp HHHHHHHHHHHHCTTSSEEEEESTTGGGGH--------HHHHHHHHTCSSEEE
T ss_pred HHHHHHHHHHhccCCCCEEEECCCchHHHH--------HHHHhhcccCCCEEE
Confidence 35666665 889999999988754331 244556666677775
No 251
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.32 E-value=1e+02 Score=22.63 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=25.0
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEE
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVH 76 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~ 76 (232)
...-+|+.+..|-.+...++ |+..|+..|+.++.+.
T Consensus 102 ~~gDvli~iS~SG~s~~vi~-a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPNVIE-AAEEAKERGMKVIALT 137 (138)
T ss_dssp -TT-EEEEEESSS-SHHHHH-HHHHHHHTT-EEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHHHHCCCEEEEEe
Confidence 45678999999988888887 5556888898877653
No 252
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=22.29 E-value=2.1e+02 Score=23.13 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
...++..+.+.++|.|++........... ..-....++....++||+..-.
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g---~~~~~i~~i~~~~~~pvia~GG 201 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTKKG---YDLELIRAVSSAVNIPVIASGG 201 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCCCC---CCHHHHHHHHhhCCCCEEEeCC
Confidence 44566777888999887765544332222 3335677788888999999875
No 253
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=22.16 E-value=2.3e+02 Score=23.90 Aligned_cols=85 Identities=12% Similarity=-0.010 Sum_probs=56.0
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCCC--------
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDDK-------- 204 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~-------- 204 (232)
+..|-.--+.......++++.|++.+.-+|+..+.+....... ..++.......+.+++||.+==.+...
T Consensus 17 ~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~--~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al 94 (281)
T PRK06806 17 NYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPL--HLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEAL 94 (281)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCCh--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Confidence 4445444445555699999999999999999887654322111 034566777888899998876444432
Q ss_pred CCCCceEEecCCCCC
Q 026810 205 DDGEPLVKVKEPEKD 219 (232)
Q Consensus 205 ~~~~~~~~~~~~~~~ 219 (232)
+.+...+.++.+..+
T Consensus 95 ~~G~tsVm~d~s~~~ 109 (281)
T PRK06806 95 EIGFTSVMFDGSHLP 109 (281)
T ss_pred HcCCCEEEEcCCCCC
Confidence 335667777776654
No 254
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=22.16 E-value=3.6e+02 Score=20.51 Aligned_cols=33 Identities=9% Similarity=0.188 Sum_probs=21.6
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHh----cCCCEEEEe
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIER----LSLSAVIMG 165 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~----~~~dlIV~G 165 (232)
.|..+.......++ .+.|.+..++ .++|+||..
T Consensus 34 ~G~~v~~~~iv~Dd-~~~i~~~l~~~~~~~~~DlVItt 70 (163)
T TIGR02667 34 AGHRLADRAIVKDD-IYQIRAQVSAWIADPDVQVILIT 70 (163)
T ss_pred CCCeEEEEEEcCCC-HHHHHHHHHHHHhcCCCCEEEEC
Confidence 37777777777777 4444444332 469988876
No 255
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=22.14 E-value=2.5e+02 Score=21.21 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 53 ESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 53 ~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
.+..|++.|++.....+.++.++.+..
T Consensus 3 ~aA~Al~eal~~~~~~~~~v~v~D~~~ 29 (169)
T PF06925_consen 3 SAARALAEALERRRGPDAEVEVVDFLE 29 (169)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEehHH
Confidence 466788888876555677888877765
No 256
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=22.11 E-value=4.8e+02 Score=21.99 Aligned_cols=36 Identities=14% Similarity=-0.016 Sum_probs=24.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v 77 (232)
..||.|-+.++.....++-.+.+-- ..+++|.++-.
T Consensus 89 ~~ri~vl~Sg~g~nl~al~~~~~~~-~~~~~i~~vis 124 (286)
T PRK13011 89 RPKVLIMVSKFDHCLNDLLYRWRIG-ELPMDIVGVVS 124 (286)
T ss_pred CceEEEEEcCCcccHHHHHHHHHcC-CCCcEEEEEEE
Confidence 4588888888877777777666533 34566555544
No 257
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=21.90 E-value=60 Score=22.16 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEE
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVl 196 (232)
.+.+..++.++||||.-....+.... --|....+.+...++|++
T Consensus 51 ~i~~~i~~~~IdlVIn~~~~~~~~~~----~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 QIMDLIKNGKIDLVINTPYPFSDQEH----TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHTTSEEEEEEE--THHHHHT----HHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHHcCCeEEEEEeCCCCccccc----CCcHHHHHHHHHcCCCCc
Confidence 38899999999999988765332221 024455566666666654
No 258
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=21.85 E-value=2.8e+02 Score=22.54 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=20.0
Q ss_pred EeeCCchHHHHHHHHHhcCCCEEEEeeC
Q 026810 140 IVKDHDMRERLCLEIERLSLSAVIMGSR 167 (232)
Q Consensus 140 ~~~g~~~~~~I~~~a~~~~~dlIV~G~~ 167 (232)
.+.|+ +...-+..+.+-++|.+|+|+.
T Consensus 173 eVDGG-I~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 173 EVDGG-INLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred EEeCC-cCHHHHHHHHHcCCCEEEEEEE
Confidence 34454 4666667778889999999983
No 259
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=21.83 E-value=5.9e+02 Score=22.85 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGF 169 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~ 169 (232)
+..+++.+.+.+.+...+|+.+-
T Consensus 245 ~~~ll~~a~~~g~~~~wigs~~~ 267 (458)
T cd06375 245 ARELLAAAKRLNASFTWVASDGW 267 (458)
T ss_pred HHHHHHHHHHcCCcEEEEEeccc
Confidence 66677888888888778877653
No 260
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=21.74 E-value=4.4e+02 Score=21.40 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=16.8
Q ss_pred CCCCcEEEEEecCChh--HHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 38 SLARRKIGVAVDLSDE--SAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 38 ~~~~~~ILv~vD~s~~--s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
+..-+.|+.....-.. +--+|..| |+..|+.+ +.|.+
T Consensus 39 G~nAkliVe~~s~g~~~~ttiaLaaA---Ar~TgGR~--vCIvp 77 (218)
T PF07279_consen 39 GWNAKLIVEAWSSGGAISTTIALAAA---ARQTGGRH--VCIVP 77 (218)
T ss_pred cccceEEEEEecCCCchHhHHHHHHH---HHhcCCeE--EEEcC
Confidence 4445666666543222 22233323 34466655 44544
No 261
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=21.68 E-value=68 Score=24.05 Aligned_cols=39 Identities=15% Similarity=0.338 Sum_probs=22.2
Q ss_pred hhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCC
Q 026810 127 RPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 127 ~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
+.+.+.|+.++........ ...+.+..++ +|.|+++...
T Consensus 7 ~~f~~~g~~v~~l~~~~~~-~~~~~~~i~~--ad~I~~~GG~ 45 (154)
T PF03575_consen 7 KAFRKLGFEVDQLDLSDRN-DADILEAIRE--ADAIFLGGGD 45 (154)
T ss_dssp HHHHHCT-EEEECCCTSCG-HHHHHHHHHH--SSEEEE--S-
T ss_pred HHHHHCCCEEEEEeccCCC-hHHHHHHHHh--CCEEEECCCC
Confidence 3444457776555555544 4466677766 9999998654
No 262
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=21.45 E-value=2.5e+02 Score=22.91 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=20.8
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSR 167 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~ 167 (232)
+.++. ..+.|+- ...-+..+.+.++|.+|+|+.
T Consensus 177 ~~~~~-IeVDGGI-~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 177 RVEKL-ISIDGSM-TLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred CCCce-EEEECCC-CHHHHHHHHHCCCCEEEEChh
Confidence 44544 3445543 444445667789999999964
No 263
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=21.40 E-value=1.7e+02 Score=26.13 Aligned_cols=51 Identities=8% Similarity=-0.079 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
.+.|.+.+++.++|-||.=.......... -....-+.+.....+|+|.+-.
T Consensus 339 ~~~l~~l~ke~~aDGVI~~~~~~C~~~~~---e~~~~~~~l~e~~GIP~L~iE~ 389 (413)
T TIGR02260 339 VDLLEKYINEYEADGLLINSIKSCNSFSA---GQLLMMREIEKRTGKPAAFIET 389 (413)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCCCcchh---hhHHHHHHHHHHcCCCEEEEEc
Confidence 67799999999999999987765544333 2223345555568999999964
No 264
>PRK06247 pyruvate kinase; Provisional
Probab=21.40 E-value=2.1e+02 Score=26.17 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC-CCcEEEEcC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVRY 200 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~-~~PVliVp~ 200 (232)
++......|...++.+||+-+++ |+++..+.++- +|||+.+=+
T Consensus 357 ia~sa~~~A~~l~a~~Iv~~T~s------------G~ta~~isk~RP~~pI~a~t~ 400 (476)
T PRK06247 357 ISYAARDIAERLDLAALVAYTSS------------GDTALRAARERPPLPILALTP 400 (476)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCC------------cHHHHHHHhhCCCCCEEEECC
Confidence 56677788888999999998754 67888888874 599999854
No 265
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=21.33 E-value=1.7e+02 Score=26.15 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=19.6
Q ss_pred CCchHHHHHHHHHhcCCCEEEEeeCCCCc
Q 026810 143 DHDMRERLCLEIERLSLSAVIMGSRGFGA 171 (232)
Q Consensus 143 g~~~~~~I~~~a~~~~~dlIV~G~~~~~~ 171 (232)
|++ .+.+++.+++.++.+|.+-+.+...
T Consensus 102 GdD-i~~v~~~~~~~~~~vi~v~t~gf~g 129 (427)
T cd01971 102 GDD-VGAVVSEFQEGGAPIVYLETGGFKG 129 (427)
T ss_pred hcC-HHHHHHHhhhcCCCEEEEECCCcCc
Confidence 666 5666666677788888888776443
No 266
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=21.21 E-value=2.1e+02 Score=25.54 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCCEEEEee
Q 026810 147 RERLCLEIERLSLSAVIMGS 166 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~ 166 (232)
.+.|+..|.+.++|+|+++.
T Consensus 31 f~eil~~a~~~~vD~VLiaG 50 (405)
T TIGR00583 31 FEEVLQIAKEQDVDMILLGG 50 (405)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 45566666666666666664
No 267
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=21.15 E-value=2.3e+02 Score=23.90 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=45.7
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
+..|-.--+.......++++.|++.+..+|+.-+.+.-..... ..+......+...+++||.+==.+..
T Consensus 12 ~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~--~~~~~~~~~~a~~~~VPV~lHLDH~~ 80 (276)
T cd00947 12 GYAVGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGL--ELLVAMVKAAAERASVPVALHLDHGS 80 (276)
T ss_pred CceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCH--HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 4444444444445699999999999999999877654322221 03455667778888999988655443
No 268
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.03 E-value=2.8e+02 Score=24.20 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=37.2
Q ss_pred hhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchh-HHHhccCCCcEEEEcCCC
Q 026810 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVS-DYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 130 ~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~-~~vl~~~~~PVliVp~~~ 202 (232)
...|+++.... +. .+....++..+|+|++|..+-..- +..+ -.|... .-+.++.++||+++-+..
T Consensus 204 ~~~GI~vtlI~---Ds---a~~~~M~~~~Vd~VivGAd~I~an-Gv~N-KiGT~~lA~~Ak~~~vPfyV~ap~s 269 (339)
T PRK06036 204 MQDNIPVTLIT---DS---MAGIVMRQGMVDKVIVGADRITRD-AVFN-KIGTYTHSVLAKEHEIPFYVAAPLS 269 (339)
T ss_pred HHcCCCEEEEe---hh---HHHHHhccCCCCEEEECccchhhc-Ceeh-hhhHHHHHHHHHHhCCCEEEEeecC
Confidence 34488876554 22 222344556699999999763221 1211 234444 344567889999986533
No 269
>PLN02461 Probable pyruvate kinase
Probab=21.02 E-value=2.2e+02 Score=26.37 Aligned_cols=43 Identities=14% Similarity=0.297 Sum_probs=34.6
Q ss_pred chHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC-CCcEEEEc
Q 026810 145 DMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC-VCPVVVVR 199 (232)
Q Consensus 145 ~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~-~~PVliVp 199 (232)
.++...+..|...++.+||+-+++ |.++..+.++- +|||+.+=
T Consensus 382 ~ia~sav~~A~~l~a~aIiv~T~s------------G~tA~~iSk~RP~~pIia~t 425 (511)
T PLN02461 382 SLASSAVRTANKVKASLIVVLTRG------------GTTARLVAKYRPAVPILSVV 425 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCC------------cHHHHHHHhhCCCCCEEEEe
Confidence 356777788899999999998754 67888888885 49999993
No 270
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=21.00 E-value=6.2e+02 Score=22.85 Aligned_cols=33 Identities=18% Similarity=0.031 Sum_probs=22.6
Q ss_pred EEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 026810 44 IGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (232)
Q Consensus 44 ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v 77 (232)
.+++.-++-.+-.+...|..+.+ .|..+.++.+
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~-~G~kV~lV~~ 136 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQR-KGFKPCLVCA 136 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEcC
Confidence 45555677778888888876654 5667777754
No 271
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=20.90 E-value=4.2e+02 Score=20.83 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=31.0
Q ss_pred CCchHHHHHHHHHhcCCCEEEEee----CCCCcccccCCCccCchhHHHhccCC-CcEEEEcC
Q 026810 143 DHDMRERLCLEIERLSLSAVIMGS----RGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVVRY 200 (232)
Q Consensus 143 g~~~~~~I~~~a~~~~~dlIV~G~----~~~~~~~~~~~~~~gs~~~~vl~~~~-~PVliVp~ 200 (232)
... .+..+..++...+|+|+|.- ... . .. ...+++.+..+ ++|+++=.
T Consensus 33 ~~~-~~~~~~~~~~~~pDlvLlDl~~~l~~~----~----g~-~~i~~i~~~~p~~~iivlt~ 85 (207)
T PRK15411 33 IET-VDDLAIACDSLRPSVVFINEDCFIHDA----S----NS-QRIKQIINQHPNTLFIVFMA 85 (207)
T ss_pred cCC-HHHHHHHHhccCCCEEEEeCcccCCCC----C----hH-HHHHHHHHHCCCCeEEEEEC
Confidence 344 55566677778899999993 221 1 12 36667766555 88888854
No 272
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=20.79 E-value=2e+02 Score=23.41 Aligned_cols=51 Identities=6% Similarity=0.137 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
...+++.+.+.+.|.|++|....-..... ..+... ++....||++.|....
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~~-----~~~v~~-ik~~~lPvilfp~~~~ 66 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEKT-----DTLIEA-LRRYGLPIILFPSNPT 66 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHHH-----HHHHHH-HhccCCCEEEeCCCcc
Confidence 34577777888999999997642222221 223333 4445599999986444
No 273
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.50 E-value=1.8e+02 Score=21.40 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=24.7
Q ss_pred eEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCC
Q 026810 136 YKIHIVKDHDMRERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 136 v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
+++...-.+...+.+++.+.+.++|.|++.+..
T Consensus 31 feVi~lg~~~s~e~~v~aa~e~~adii~iSsl~ 63 (132)
T TIGR00640 31 FDVDVGPLFQTPEEIARQAVEADVHVVGVSSLA 63 (132)
T ss_pred cEEEECCCCCCHHHHHHHHHHcCCCEEEEcCch
Confidence 444444444457889999999999999998754
No 274
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=20.50 E-value=2.6e+02 Score=20.88 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=21.8
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHh----cCCCEEEEe
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIER----LSLSAVIMG 165 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~----~~~dlIV~G 165 (232)
..|.++.......++ .+.|.+..++ .++|+||..
T Consensus 31 ~~G~~v~~~~~v~Dd-~~~i~~~l~~~~~~~~~DlVitt 68 (152)
T cd00886 31 EAGHEVVAYEIVPDD-KDEIREALIEWADEDGVDLILTT 68 (152)
T ss_pred HcCCeeeeEEEcCCC-HHHHHHHHHHHHhcCCCCEEEEC
Confidence 347777777777777 4444443332 268988886
No 275
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.47 E-value=2.1e+02 Score=20.25 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=30.6
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
..+.+++.+..|-++...++ +++.|+..|+++..+.-...
T Consensus 46 ~~~dl~I~iS~SG~t~~~~~-~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTKETVA-AAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCChHHHH-HHHHHHHcCCeEEEEECCCC
Confidence 45789999999988888877 66668888988777665543
No 276
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=20.47 E-value=2.6e+02 Score=22.09 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=6.4
Q ss_pred HHhccCCCcEEEE
Q 026810 186 YCVHHCVCPVVVV 198 (232)
Q Consensus 186 ~vl~~~~~PVliV 198 (232)
.++...++||++|
T Consensus 127 dl~~~l~~pvilV 139 (222)
T PRK00090 127 DLAKQLQLPVILV 139 (222)
T ss_pred HHHHHhCCCEEEE
Confidence 3444455555444
No 277
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.41 E-value=5.9e+02 Score=22.29 Aligned_cols=72 Identities=17% Similarity=0.036 Sum_probs=45.1
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccC--C-----------CccCchhHHHhccCCCcEEEEc
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGS--D-----------GKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~--~-----------~~~gs~~~~vl~~~~~PVliVp 199 (232)
+..+-.--........+|++.|++.+..+|+.-+.+........ + ..++.....+..++++||.+==
T Consensus 15 ~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHL 94 (345)
T cd00946 15 GFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHT 94 (345)
T ss_pred CceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEEC
Confidence 44444444444556999999999999999999887632211110 0 0134455677888999987654
Q ss_pred CCCCC
Q 026810 200 YPDDK 204 (232)
Q Consensus 200 ~~~~~ 204 (232)
.+...
T Consensus 95 DHg~~ 99 (345)
T cd00946 95 DHCAK 99 (345)
T ss_pred CCCCC
Confidence 44433
No 278
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=20.37 E-value=3.3e+02 Score=24.55 Aligned_cols=56 Identities=7% Similarity=-0.058 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEee
Q 026810 110 LEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGS 166 (232)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~ 166 (232)
+++..-..+++.++++.+.+...|..|.+.... ....+.|.+.+++++..-|+.|.
T Consensus 41 ik~~~~~~ld~~l~~~~~~~~~~g~~v~~a~t~-~eA~~~v~~i~~~~~~~~vv~~k 96 (432)
T TIGR00273 41 IKLKVLENLDFYLDQLKENVTQRGGHVYYAKTA-EEARKIIGKVAQEKNGKKVVKSK 96 (432)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHHHHHhCCCEEEEcC
Confidence 334444455566666666666556554443332 33467788999999999999984
No 279
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=20.37 E-value=4.1e+02 Score=24.80 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=34.1
Q ss_pred CcceEEEEeeCCchHHHHHHH---HHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 133 GFPYKIHIVKDHDMRERLCLE---IERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~---a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
+..+++.++.+. ..+++... ....++|.||-. |+++..|=.+.++||+.++-...
T Consensus 37 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~dviIsr---------------G~ta~~i~~~~~iPVv~i~~s~~ 94 (538)
T PRK15424 37 DHLANITPIQLG-FEKAVTYIRKRLATERCDAIIAA---------------GSNGAYLKSRLSVPVILIKPSGF 94 (538)
T ss_pred CCCceEEehhhh-HHHHHHHHHHHHhhCCCcEEEEC---------------chHHHHHHhhCCCCEEEecCCHh
Confidence 445566655543 23333222 334578887632 56788777888999999986443
No 280
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.29 E-value=1.7e+02 Score=22.36 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=31.8
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
..+-+++.++.|-.+...++ +++.|+..|+++.++.-...
T Consensus 71 ~~~Dv~I~iS~sG~t~~~i~-~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 71 KKGDLLIAISGSGETESLVT-VAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred CCCCEEEEEeCCCCcHHHHH-HHHHHHHCCCeEEEEECCCC
Confidence 45789999999998888888 44558889999888876543
No 281
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=20.25 E-value=6e+02 Score=22.35 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=22.0
Q ss_pred EEEEeeCCchHHHHHHHHHhcCCCEEEEe
Q 026810 137 KIHIVKDHDMRERLCLEIERLSLSAVIMG 165 (232)
Q Consensus 137 ~~~~~~g~~~~~~I~~~a~~~~~dlIV~G 165 (232)
...+..+.+ .+.+.+.+++.++||+|-|
T Consensus 325 ~~~v~~~~d-~~~l~~~i~~~~pDlli~~ 352 (396)
T cd01979 325 MVRIVEKPD-NYRQLDRIRELRPDLVVTG 352 (396)
T ss_pred CCeEEECCC-HHHHHHHHHhcCCCEEEec
Confidence 345566666 7778888999999999976
No 282
>TIGR00930 2a30 K-Cl cotransporter.
Probab=20.14 E-value=9.1e+02 Score=24.39 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=73.6
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (232)
-.+||.+.........+++|-.+.+ ..+-+.+.||...+... ..+..+..++.....
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l~~-~~gl~i~~~v~~~~~~~------------------~~~~~~~~~~~~~~~---- 632 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQFTK-GKGLMICGSVIQGPRLE------------------CVKEAQAAEAKIQTW---- 632 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHhcc-CCcEEEEEEEecCchhh------------------hHHHHHHHHHHHHHH----
Confidence 5688888888888888999999884 44567777887542100 001111112222211
Q ss_pred HHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcC-----CCEEEEeeCCCCccccc----CCCccCchhHHHhccCC
Q 026810 122 AADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLS-----LSAVIMGSRGFGAEKRG----SDGKLGSVSDYCVHHCV 192 (232)
Q Consensus 122 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~-----~dlIV~G~~~~~~~~~~----~~~~~gs~~~~vl~~~~ 192 (232)
++..+++.=+.++.+.+..+.+....+..+ .+.|+||.... +..- .+.+++ +. +-+....
T Consensus 633 -------~~~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~--w~~~~~~~~~~y~~-~i-~~a~~~~ 701 (953)
T TIGR00930 633 -------LEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKD--WRQAEPRAWETYIG-II-HDAFDAH 701 (953)
T ss_pred -------HHHhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccc--hhhccchhHHHHHH-HH-HHHHHcC
Confidence 122356666667777777888888777654 68999998742 1100 000121 11 2234578
Q ss_pred CcEEEEcCCC
Q 026810 193 CPVVVVRYPD 202 (232)
Q Consensus 193 ~PVliVp~~~ 202 (232)
.-|++.+...
T Consensus 702 ~~v~i~r~~~ 711 (953)
T TIGR00930 702 LAVVVVRNSE 711 (953)
T ss_pred CcEEEEcccc
Confidence 8999998744
No 283
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.10 E-value=2.1e+02 Score=20.19 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=31.0
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
..+.+++.+..|-.+...++.+- .|+..|+++.++.-...
T Consensus 46 ~~~d~vi~iS~sG~t~~~~~~~~-~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 46 TPGDVVIAISNSGETDELLNLLP-HLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHH-HHHHCCCeEEEEeCCCC
Confidence 45778999999988888888544 47878998888877644
No 284
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=20.03 E-value=2.1e+02 Score=23.26 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCC-CcEEEEcCCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV-CPVVVVRYPDD 203 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~-~PVliVp~~~~ 203 (232)
.+.+.+.+.+.+.|.|++|....-. . -+..+...+-+..+ .||++.|....
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v~--~----~~~~~~~~ik~~~~~~Pvilfp~~~~ 65 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGVS--S----TLDNVVRLIKRIRRPVPVILFPSNPE 65 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccchh--h----hHHHHHHHHHHhcCCCCEEEeCCCcc
Confidence 4567788888899999999764221 1 12223333333344 99999997544
No 285
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=20.01 E-value=3.2e+02 Score=19.12 Aligned_cols=62 Identities=15% Similarity=0.052 Sum_probs=36.6
Q ss_pred CcceEEEEeeCCchHHHHHHHHHh-cCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEE
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIER-LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~-~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVli 197 (232)
|++++........-...|.+..++ .++|+||--..+....... --|....+.+...++|++-
T Consensus 42 Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~---~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 42 GIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTD---EDGTALLRLARLYKIPVTT 104 (112)
T ss_pred CCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccC---CChHHHHHHHHHcCCCEEE
Confidence 777665543311013457788888 8999999865443311111 2355666666666888874
Done!