Query 026810
Match_columns 232
No_of_seqs 110 out of 1778
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 22:44:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 1.4E-25 4.9E-30 168.9 16.0 142 39-199 3-146 (146)
2 1mjh_A Protein (ATP-binding do 99.9 8.8E-25 3E-29 167.6 17.9 154 40-201 4-160 (162)
3 2dum_A Hypothetical protein PH 99.9 1.8E-24 6.2E-29 167.2 16.9 153 38-204 2-160 (170)
4 3olq_A Universal stress protei 99.9 1.9E-24 6.4E-29 182.9 17.1 170 38-224 4-174 (319)
5 3mt0_A Uncharacterized protein 99.9 6.6E-25 2.3E-29 183.7 13.6 161 2-200 108-276 (290)
6 3tnj_A Universal stress protei 99.9 2.1E-24 7.1E-29 163.3 14.7 145 38-201 3-148 (150)
7 3idf_A USP-like protein; unive 99.9 5.6E-24 1.9E-28 158.7 16.2 136 41-199 1-138 (138)
8 3fg9_A Protein of universal st 99.9 5.6E-24 1.9E-28 162.1 15.7 140 38-199 12-156 (156)
9 3hgm_A Universal stress protei 99.9 2E-24 6.7E-29 162.7 12.9 144 40-198 1-147 (147)
10 3olq_A Universal stress protei 99.9 1.3E-24 4.4E-29 183.9 12.8 168 2-202 130-307 (319)
11 1tq8_A Hypothetical protein RV 99.9 4.6E-24 1.6E-28 164.4 12.8 143 39-202 15-160 (163)
12 3dlo_A Universal stress protei 99.9 5.8E-24 2E-28 162.5 12.5 133 37-199 20-155 (155)
13 2z08_A Universal stress protei 99.9 8E-24 2.7E-28 157.9 12.8 136 40-199 1-137 (137)
14 3cis_A Uncharacterized protein 99.9 7.6E-24 2.6E-28 178.8 14.0 167 2-201 141-307 (309)
15 3loq_A Universal stress protei 99.9 3.6E-24 1.2E-28 179.5 11.4 150 3-202 143-292 (294)
16 2gm3_A Unknown protein; AT3G01 99.9 2.6E-23 8.9E-28 161.5 15.1 151 40-203 4-166 (175)
17 3loq_A Universal stress protei 99.9 1.3E-23 4.4E-28 176.1 11.6 167 30-217 11-181 (294)
18 3mt0_A Uncharacterized protein 99.9 2.2E-23 7.4E-28 174.5 12.1 148 37-222 3-150 (290)
19 3fdx_A Putative filament prote 99.9 3.6E-23 1.2E-27 155.1 11.4 140 42-199 2-143 (143)
20 3cis_A Uncharacterized protein 99.9 1.5E-21 5.2E-26 164.6 16.1 167 34-218 12-183 (309)
21 3ab8_A Putative uncharacterize 99.9 1.1E-21 3.8E-26 162.0 13.2 165 42-218 1-166 (268)
22 3ab8_A Putative uncharacterize 99.9 4.3E-22 1.5E-26 164.5 10.5 140 2-199 129-268 (268)
23 1jmv_A USPA, universal stress 99.9 4.3E-22 1.5E-26 148.9 9.1 137 40-201 1-139 (141)
24 1q77_A Hypothetical protein AQ 99.8 6E-20 2E-24 136.8 11.9 134 40-199 3-138 (138)
25 3qjg_A Epidermin biosynthesis 93.9 0.12 4.1E-06 39.3 6.0 115 40-200 4-118 (175)
26 1g63_A Epidermin modifying enz 92.3 0.16 5.4E-06 38.8 4.5 114 40-200 1-115 (181)
27 4b4k_A N5-carboxyaminoimidazol 91.4 1.7 5.7E-05 32.9 9.1 62 131-203 47-111 (181)
28 4grd_A N5-CAIR mutase, phospho 91.0 0.92 3.1E-05 34.1 7.3 62 131-203 37-101 (173)
29 1o97_C Electron transferring f 90.6 1.6 5.5E-05 35.2 9.2 34 46-79 31-66 (264)
30 1efp_B ETF, protein (electron 90.5 3.3 0.00011 33.2 10.9 32 47-79 32-65 (252)
31 3a2k_A TRNA(Ile)-lysidine synt 90.3 2 6.8E-05 37.6 10.1 40 41-80 18-57 (464)
32 3g40_A Na-K-CL cotransporter; 90.1 4.6 0.00016 33.0 11.3 125 42-204 21-150 (294)
33 2ywx_A Phosphoribosylaminoimid 89.9 1.6 5.4E-05 32.3 7.7 59 131-200 24-82 (157)
34 1efv_B Electron transfer flavo 89.7 3.2 0.00011 33.3 10.2 32 47-79 35-68 (255)
35 3trh_A Phosphoribosylaminoimid 89.6 2 6.7E-05 32.2 8.1 61 131-202 31-94 (169)
36 3kuu_A Phosphoribosylaminoimid 89.0 2.3 7.9E-05 32.0 8.1 61 131-202 37-100 (174)
37 1p3y_1 MRSD protein; flavoprot 89.0 0.5 1.7E-05 36.5 4.7 115 40-200 7-123 (194)
38 3oow_A Phosphoribosylaminoimid 88.7 3.4 0.00012 30.8 8.8 62 131-203 30-94 (166)
39 1xmp_A PURE, phosphoribosylami 88.6 2.8 9.4E-05 31.4 8.3 62 131-203 36-100 (170)
40 1wy5_A TILS, hypothetical UPF0 88.6 9.2 0.00031 31.4 12.7 40 41-80 24-64 (317)
41 3ih5_A Electron transfer flavo 88.5 3 0.0001 32.6 9.0 39 41-79 3-46 (217)
42 1qzu_A Hypothetical protein MD 88.2 0.46 1.6E-05 37.0 4.0 122 39-200 17-140 (206)
43 2ejb_A Probable aromatic acid 88.0 1.3 4.6E-05 33.8 6.5 125 42-203 2-129 (189)
44 3ors_A N5-carboxyaminoimidazol 87.8 2.2 7.5E-05 31.8 7.2 62 131-203 28-92 (163)
45 3lp6_A Phosphoribosylaminoimid 87.5 2 6.8E-05 32.3 6.9 61 131-202 32-95 (174)
46 1o4v_A Phosphoribosylaminoimid 87.0 2.8 9.6E-05 31.8 7.5 61 131-202 38-101 (183)
47 2iel_A Hypothetical protein TT 86.9 6.9 0.00024 28.2 12.8 65 128-198 66-133 (138)
48 1u11_A PURE (N5-carboxyaminoim 86.8 3.3 0.00011 31.4 7.8 61 131-202 46-109 (182)
49 1mvl_A PPC decarboxylase athal 86.4 1.4 4.7E-05 34.4 5.8 47 152-200 92-140 (209)
50 3rg8_A Phosphoribosylaminoimid 86.2 2.3 7.8E-05 31.6 6.6 61 131-202 27-91 (159)
51 2xry_A Deoxyribodipyrimidine p 76.3 14 0.00049 32.2 9.3 116 49-200 46-161 (482)
52 3kcq_A Phosphoribosylglycinami 75.9 17 0.0006 28.2 8.7 144 40-230 7-173 (215)
53 1iv0_A Hypothetical protein; r 75.6 7.6 0.00026 26.2 5.8 51 146-201 39-94 (98)
54 4ds3_A Phosphoribosylglycinami 74.8 20 0.00069 27.7 8.8 89 38-168 4-96 (209)
55 1zun_A Sulfate adenylyltransfe 73.3 16 0.00056 30.2 8.4 40 41-80 46-85 (325)
56 1dnp_A DNA photolyase; DNA rep 69.3 13 0.00045 32.4 7.3 47 119-166 55-103 (471)
57 2wq7_A RE11660P; lyase-DNA com 67.8 46 0.0016 29.5 10.6 100 42-166 29-132 (543)
58 3umv_A Deoxyribodipyrimidine p 67.1 18 0.00061 32.0 7.7 89 49-164 47-135 (506)
59 2h31_A Multifunctional protein 66.7 14 0.00046 32.0 6.6 63 128-201 287-353 (425)
60 3zqu_A Probable aromatic acid 65.8 9 0.00031 29.7 4.9 37 40-77 3-39 (209)
61 1v6t_A Hypothetical UPF0271 pr 64.3 52 0.0018 26.2 9.1 126 41-198 28-163 (255)
62 3g40_A Na-K-CL cotransporter; 62.9 61 0.0021 26.4 10.1 132 12-200 136-277 (294)
63 2qv7_A Diacylglycerol kinase D 60.8 18 0.00062 29.8 6.3 66 132-206 54-120 (337)
64 2j4d_A Cryptochrome 3, cryptoc 59.8 83 0.0028 27.7 10.7 131 42-201 40-175 (525)
65 1xw8_A UPF0271 protein YBGL; N 59.6 54 0.0019 26.0 8.4 126 42-199 24-159 (252)
66 2nz2_A Argininosuccinate synth 59.2 84 0.0029 26.8 11.1 37 40-80 4-40 (413)
67 1owl_A Photolyase, deoxyribodi 59.1 18 0.0006 31.7 6.2 70 124-201 61-130 (484)
68 2bon_A Lipid kinase; DAG kinas 57.1 27 0.00091 28.7 6.7 65 132-205 56-123 (332)
69 1u3d_A Cryptochrome 1 apoprote 56.2 1E+02 0.0035 26.9 11.7 119 49-201 21-139 (509)
70 3tvs_A Cryptochrome-1; circadi 55.8 35 0.0012 30.3 7.6 92 49-166 13-107 (538)
71 1np7_A DNA photolyase; protein 55.6 1E+02 0.0035 26.7 12.7 101 42-166 6-108 (489)
72 3p9x_A Phosphoribosylglycinami 55.4 69 0.0024 24.6 9.5 36 41-77 2-37 (211)
73 2dfa_A Hypothetical UPF0271 pr 55.3 50 0.0017 26.2 7.5 127 41-199 28-164 (250)
74 2j07_A Deoxyribodipyrimidine p 55.0 50 0.0017 28.2 8.3 70 120-200 52-121 (420)
75 3da8_A Probable 5'-phosphoribo 54.2 67 0.0023 24.8 8.1 141 40-230 11-180 (215)
76 3bl5_A Queuosine biosynthesis 53.5 68 0.0023 24.0 11.2 36 40-79 2-37 (219)
77 3s40_A Diacylglycerol kinase; 52.5 30 0.001 28.0 6.2 64 133-206 39-103 (304)
78 1nu0_A Hypothetical protein YQ 52.3 9.4 0.00032 27.5 2.7 57 146-205 41-101 (138)
79 1ni5_A Putative cell cycle pro 50.5 26 0.00088 30.2 5.7 40 41-80 13-53 (433)
80 3tqr_A Phosphoribosylglycinami 50.1 85 0.0029 24.2 8.8 143 41-230 5-174 (215)
81 2x5e_A UPF0271 protein PA4511; 49.7 64 0.0022 25.6 7.3 129 41-198 34-172 (252)
82 3hly_A Flavodoxin-like domain; 49.7 49 0.0017 23.8 6.5 35 133-170 29-63 (161)
83 3f6p_A Transcriptional regulat 48.9 54 0.0018 21.5 7.5 47 147-200 35-81 (120)
84 3fy4_A 6-4 photolyase; DNA rep 48.0 35 0.0012 30.4 6.2 105 42-166 5-111 (537)
85 3fni_A Putative diflavin flavo 47.3 41 0.0014 24.3 5.7 35 133-170 33-68 (159)
86 1vhx_A Putative holliday junct 46.8 8.6 0.00029 28.1 1.8 59 145-203 42-101 (150)
87 2wsi_A FAD synthetase; transfe 46.4 69 0.0023 26.0 7.4 23 42-64 54-76 (306)
88 1jq5_A Glycerol dehydrogenase; 46.1 40 0.0014 28.1 6.1 58 133-201 58-119 (370)
89 3cg0_A Response regulator rece 43.9 70 0.0024 21.4 7.6 49 147-201 43-91 (140)
90 2oq2_A Phosphoadenosine phosph 43.8 1.2E+02 0.004 23.9 10.0 39 41-80 41-79 (261)
91 3o1l_A Formyltetrahydrofolate 43.4 1.3E+02 0.0045 24.4 10.6 84 41-168 105-191 (302)
92 1sbz_A Probable aromatic acid 43.4 39 0.0013 25.7 5.1 36 42-77 1-36 (197)
93 2e0i_A 432AA long hypothetical 43.1 29 0.00098 30.0 4.8 114 53-201 14-127 (440)
94 3obi_A Formyltetrahydrofolate 42.6 1.3E+02 0.0045 24.2 9.3 36 40-76 88-123 (288)
95 3dff_A Teicoplanin pseudoaglyc 41.9 1.3E+02 0.0044 23.9 8.4 51 146-199 136-186 (273)
96 3h5i_A Response regulator/sens 41.7 78 0.0027 21.3 7.4 50 147-203 39-89 (140)
97 1meo_A Phosophoribosylglycinam 41.6 1.2E+02 0.0039 23.2 9.1 36 42-78 1-36 (209)
98 3auf_A Glycinamide ribonucleot 41.4 1.2E+02 0.0042 23.5 9.9 77 148-230 91-192 (229)
99 1k92_A Argininosuccinate synth 40.9 1.8E+02 0.0061 25.2 11.8 37 40-80 9-45 (455)
100 3k32_A Uncharacterized protein 40.8 41 0.0014 25.4 4.9 38 39-80 4-41 (203)
101 2c5s_A THII, probable thiamine 40.7 1.7E+02 0.0057 24.8 11.0 36 40-79 186-221 (413)
102 3ecs_A Translation initiation 40.2 1.2E+02 0.004 24.9 7.9 39 158-200 189-231 (315)
103 3lou_A Formyltetrahydrofolate 39.2 1.5E+02 0.0052 23.9 10.6 85 40-168 94-181 (292)
104 2dpl_A GMP synthetase, GMP syn 38.8 1.3E+02 0.0044 24.4 8.0 35 42-79 21-55 (308)
105 3n0v_A Formyltetrahydrofolate 38.5 1.5E+02 0.0053 23.8 10.8 85 40-168 89-176 (286)
106 3u7r_A NADPH-dependent FMN red 36.3 97 0.0033 23.2 6.4 38 40-78 1-41 (190)
107 3lqk_A Dipicolinate synthase s 36.3 36 0.0012 26.0 4.0 48 157-204 85-135 (201)
108 2ywr_A Phosphoribosylglycinami 35.9 1.4E+02 0.0049 22.7 8.7 21 148-168 70-90 (216)
109 1vbk_A Hypothetical protein PH 35.8 1.3E+02 0.0046 24.3 7.6 34 40-78 178-211 (307)
110 1ccw_A Protein (glutamate muta 35.6 67 0.0023 22.5 5.1 61 133-200 31-93 (137)
111 3mcu_A Dipicolinate synthase, 35.4 36 0.0012 26.2 3.8 49 156-204 82-133 (207)
112 1o97_D Electron transferring f 34.6 1.9E+02 0.0064 23.7 9.0 28 50-78 14-42 (320)
113 1xky_A Dihydrodipicolinate syn 34.0 1.5E+02 0.005 23.9 7.5 49 149-201 98-147 (301)
114 3mcu_A Dipicolinate synthase, 33.6 18 0.00063 27.9 1.8 39 39-78 3-42 (207)
115 3eb2_A Putative dihydrodipicol 33.2 1.9E+02 0.0065 23.2 9.0 66 133-202 73-140 (300)
116 3kht_A Response regulator; PSI 33.2 1.1E+02 0.0038 20.5 7.8 48 147-201 40-90 (144)
117 2yxb_A Coenzyme B12-dependent 32.7 62 0.0021 23.5 4.6 60 136-200 47-108 (161)
118 1o5k_A DHDPS, dihydrodipicolin 32.3 1.5E+02 0.0052 23.9 7.4 50 149-201 98-147 (306)
119 2zay_A Response regulator rece 32.3 1.2E+02 0.0039 20.5 6.4 48 147-201 41-91 (147)
120 1qv9_A F420-dependent methylen 32.2 82 0.0028 25.0 5.2 44 150-200 56-99 (283)
121 1sur_A PAPS reductase; assimil 32.1 1.6E+02 0.0054 22.0 9.9 35 42-80 45-79 (215)
122 2vc6_A MOSA, dihydrodipicolina 32.1 1.4E+02 0.0048 23.9 7.1 50 149-201 86-135 (292)
123 2qxy_A Response regulator; reg 31.9 1.1E+02 0.0039 20.3 6.6 47 147-201 37-84 (142)
124 2ehh_A DHDPS, dihydrodipicolin 31.7 1.5E+02 0.0051 23.8 7.2 61 137-201 71-135 (294)
125 3d0c_A Dihydrodipicolinate syn 31.7 1.6E+02 0.0055 23.9 7.5 59 138-199 84-144 (314)
126 1vl2_A Argininosuccinate synth 31.6 1.7E+02 0.0059 25.0 7.8 36 40-79 13-48 (421)
127 2l69_A Rossmann 2X3 fold prote 31.6 84 0.0029 20.9 4.5 36 133-168 50-85 (134)
128 3to5_A CHEY homolog; alpha(5)b 31.5 1.3E+02 0.0045 20.9 6.7 47 147-200 46-95 (134)
129 2a9o_A Response regulator; ess 31.5 97 0.0033 19.8 5.2 47 147-200 34-80 (120)
130 3gxq_A Putative regulator of t 31.4 61 0.0021 18.2 3.2 29 133-161 9-37 (54)
131 2amj_A Modulator of drug activ 31.3 1.4E+02 0.0046 22.4 6.6 35 133-169 47-81 (204)
132 3hv2_A Response regulator/HD d 31.0 1.2E+02 0.0042 20.6 6.0 48 147-201 47-95 (153)
133 2r8w_A AGR_C_1641P; APC7498, d 31.0 1.6E+02 0.0055 24.2 7.4 50 149-201 120-169 (332)
134 2v9d_A YAGE; dihydrodipicolini 30.7 1.5E+02 0.0052 24.4 7.2 49 149-201 117-166 (343)
135 3e96_A Dihydrodipicolinate syn 30.6 1.2E+02 0.0042 24.6 6.5 61 134-200 82-145 (316)
136 2gkg_A Response regulator homo 30.3 1.1E+02 0.0038 19.7 6.9 46 147-198 38-86 (127)
137 3i42_A Response regulator rece 30.2 1.2E+02 0.0039 19.8 7.6 49 147-202 36-87 (127)
138 3cpr_A Dihydrodipicolinate syn 30.2 1.6E+02 0.0056 23.7 7.2 61 137-201 87-151 (304)
139 3eod_A Protein HNR; response r 30.1 1.2E+02 0.004 19.9 7.0 49 147-202 40-89 (130)
140 2yxg_A DHDPS, dihydrodipicolin 29.9 1.5E+02 0.0051 23.7 6.9 62 136-201 70-135 (289)
141 3nbm_A PTS system, lactose-spe 29.8 50 0.0017 22.4 3.4 53 133-200 34-86 (108)
142 2ojp_A DHDPS, dihydrodipicolin 29.7 1.4E+02 0.0048 23.9 6.7 49 149-201 87-136 (292)
143 2is8_A Molybdopterin biosynthe 29.6 93 0.0032 22.5 5.2 36 129-165 30-69 (164)
144 1f6k_A N-acetylneuraminate lya 29.6 2.2E+02 0.0074 22.8 8.7 62 136-200 74-138 (293)
145 3zqu_A Probable aromatic acid 29.5 18 0.00061 28.0 1.1 46 158-203 94-142 (209)
146 2yvk_A Methylthioribose-1-phos 29.5 54 0.0018 27.7 4.2 62 130-200 230-294 (374)
147 3qk7_A Transcriptional regulat 29.4 2E+02 0.0067 22.3 10.4 60 131-201 38-97 (294)
148 3dbi_A Sugar-binding transcrip 29.2 2.1E+02 0.0073 22.6 8.8 61 132-202 92-153 (338)
149 1y5e_A Molybdenum cofactor bio 29.2 86 0.0029 22.9 4.9 32 133-165 44-79 (169)
150 3a11_A Translation initiation 28.9 1.7E+02 0.0057 24.2 7.1 57 132-200 191-251 (338)
151 1t9k_A Probable methylthioribo 28.9 55 0.0019 27.3 4.1 61 131-200 206-269 (347)
152 2a0u_A Initiation factor 2B; S 28.8 51 0.0017 28.0 3.9 61 131-201 235-299 (383)
153 3iwt_A 178AA long hypothetical 28.6 1.1E+02 0.0037 22.4 5.4 36 130-166 50-89 (178)
154 2rfg_A Dihydrodipicolinate syn 28.6 1.5E+02 0.005 23.9 6.7 50 149-201 86-135 (297)
155 2ywb_A GMP synthase [glutamine 28.1 3E+02 0.01 23.9 10.5 34 42-79 210-243 (503)
156 3a5f_A Dihydrodipicolinate syn 27.7 1.5E+02 0.0051 23.7 6.5 49 149-201 87-136 (291)
157 3na8_A Putative dihydrodipicol 27.0 1.5E+02 0.005 24.2 6.4 52 147-201 108-159 (315)
158 1y80_A Predicted cobalamin bin 27.0 87 0.003 23.6 4.8 60 137-201 118-180 (210)
159 3qze_A DHDPS, dihydrodipicolin 26.5 2.2E+02 0.0074 23.1 7.4 51 148-201 108-158 (314)
160 3kbq_A Protein TA0487; structu 26.4 1.8E+02 0.006 21.5 6.2 34 131-165 34-69 (172)
161 2i2x_B MTAC, methyltransferase 26.0 2.2E+02 0.0074 22.3 7.1 65 132-203 150-215 (258)
162 2ohh_A Type A flavoprotein FPR 25.7 2.7E+02 0.0094 22.7 9.6 36 43-78 227-265 (404)
163 3gt7_A Sensor protein; structu 25.6 1.6E+02 0.0056 20.1 7.9 48 147-201 40-90 (154)
164 3av3_A Phosphoribosylglycinami 25.6 2.2E+02 0.0076 21.6 8.7 79 148-230 72-173 (212)
165 1s8n_A Putative antiterminator 25.5 1.9E+02 0.0066 20.9 8.3 46 147-199 47-92 (205)
166 2qzj_A Two-component response 25.5 1.5E+02 0.0052 19.7 6.8 47 147-200 37-83 (136)
167 3tak_A DHDPS, dihydrodipicolin 25.5 1.7E+02 0.0059 23.3 6.5 49 149-201 87-136 (291)
168 3q9s_A DNA-binding response re 25.2 2.3E+02 0.0077 21.5 7.4 48 147-201 70-117 (249)
169 3uhj_A Probable glycerol dehyd 25.1 1.1E+02 0.0037 25.8 5.4 63 128-201 74-139 (387)
170 3vk5_A MOEO5; TIM barrel, tran 25.1 55 0.0019 26.6 3.3 46 150-199 58-104 (286)
171 3l21_A DHDPS, dihydrodipicolin 24.9 2.7E+02 0.0092 22.4 8.2 52 147-201 99-150 (304)
172 1mkz_A Molybdenum cofactor bio 24.9 1.3E+02 0.0046 21.9 5.3 33 132-165 40-76 (172)
173 1zgz_A Torcad operon transcrip 24.7 1.4E+02 0.0049 19.1 7.7 47 147-200 35-81 (122)
174 1v95_A Nuclear receptor coacti 24.6 1.9E+02 0.0064 20.4 5.8 38 130-167 32-70 (130)
175 3si9_A DHDPS, dihydrodipicolin 24.3 2.8E+02 0.0097 22.4 8.2 50 149-201 108-157 (315)
176 2wkj_A N-acetylneuraminate lya 24.1 1.7E+02 0.0057 23.6 6.2 61 136-200 81-146 (303)
177 3gl9_A Response regulator; bet 24.1 1.5E+02 0.0052 19.2 7.1 47 147-200 35-84 (122)
178 3cg4_A Response regulator rece 23.9 1.6E+02 0.0056 19.5 7.1 48 147-201 40-90 (142)
179 2pjk_A 178AA long hypothetical 23.9 1.3E+02 0.0044 22.2 5.1 35 130-165 50-88 (178)
180 3fvw_A Putative NAD(P)H-depend 23.8 2.2E+02 0.0075 20.9 7.1 35 42-78 3-41 (192)
181 3ouz_A Biotin carboxylase; str 23.7 1.8E+02 0.0063 24.5 6.7 36 39-79 4-39 (446)
182 3tqi_A GMP synthase [glutamine 23.7 1.6E+02 0.0054 25.9 6.3 35 42-79 231-265 (527)
183 1rrm_A Lactaldehyde reductase; 23.7 83 0.0028 26.3 4.4 21 147-167 77-98 (386)
184 3uug_A Multiple sugar-binding 23.5 2.7E+02 0.0091 21.8 9.4 44 12-68 82-126 (330)
185 3f6c_A Positive transcription 23.5 1.6E+02 0.0055 19.2 7.2 46 150-202 38-84 (134)
186 1t5o_A EIF2BD, translation ini 23.4 44 0.0015 28.0 2.5 60 131-200 204-266 (351)
187 2f6u_A GGGPS, (S)-3-O-geranylg 23.1 1.5E+02 0.005 23.2 5.4 69 148-222 23-93 (234)
188 3n0r_A Response regulator; sig 22.8 2.8E+02 0.0096 21.8 9.0 49 147-201 194-242 (286)
189 3nhm_A Response regulator; pro 22.6 1.7E+02 0.0057 19.1 5.6 48 147-201 36-86 (133)
190 3m6m_D Sensory/regulatory prot 22.6 1.8E+02 0.0062 19.5 6.2 48 147-201 47-99 (143)
191 3daq_A DHDPS, dihydrodipicolin 22.4 2.1E+02 0.007 22.9 6.4 49 149-201 88-137 (292)
192 3rfq_A Pterin-4-alpha-carbinol 22.4 1.7E+02 0.0057 21.9 5.4 34 131-165 60-96 (185)
193 3n53_A Response regulator rece 22.0 1.8E+02 0.0061 19.3 7.4 48 147-201 35-85 (140)
194 1e5d_A Rubredoxin\:oxygen oxid 21.7 3.3E+02 0.011 22.2 9.4 35 133-170 281-315 (402)
195 3rpe_A MDAB, modulator of drug 21.6 2.5E+02 0.0084 21.5 6.4 34 133-169 60-94 (218)
196 3vzx_A Heptaprenylglyceryl pho 21.5 96 0.0033 24.2 4.0 47 150-202 23-69 (228)
197 2g2c_A Putative molybdenum cof 21.4 1.2E+02 0.0043 21.9 4.5 34 131-165 40-76 (167)
198 1k68_A Phytochrome response re 21.4 1.8E+02 0.0061 19.0 7.3 48 147-201 37-94 (140)
199 3grc_A Sensor protein, kinase; 21.4 1.8E+02 0.0063 19.2 7.4 47 147-200 39-88 (140)
200 2p0y_A Hypothetical protein LP 21.3 1E+02 0.0036 25.6 4.4 49 146-200 178-228 (341)
201 3t8y_A CHEB, chemotaxis respon 21.1 2.1E+02 0.0073 19.8 7.7 47 147-200 60-106 (164)
202 2ozz_A Hypothetical protein YH 21.0 2.5E+02 0.0085 21.8 6.4 31 133-166 43-73 (231)
203 2der_A TRNA-specific 2-thiouri 20.7 3.7E+02 0.013 22.4 11.1 36 40-79 16-51 (380)
204 2q7x_A UPF0052 protein SP_1565 20.7 1.3E+02 0.0043 24.9 4.8 49 146-200 174-224 (326)
205 4dad_A Putative pilus assembly 20.6 1.8E+02 0.0061 19.5 5.1 48 147-201 55-104 (146)
206 3w01_A Heptaprenylglyceryl pho 20.5 2.4E+02 0.0082 22.0 6.1 47 149-201 27-73 (235)
207 3m5v_A DHDPS, dihydrodipicolin 20.5 3.3E+02 0.011 21.7 8.1 63 136-201 78-143 (301)
208 1kor_A Argininosuccinate synth 20.3 3.9E+02 0.013 22.5 11.6 36 42-80 1-36 (400)
209 3flu_A DHDPS, dihydrodipicolin 20.2 3.3E+02 0.011 21.7 9.8 49 149-201 93-142 (297)
210 3l6u_A ABC-type sugar transpor 20.1 2.9E+02 0.01 21.0 10.2 63 132-203 37-100 (293)
211 3ce9_A Glycerol dehydrogenase; 20.1 1.3E+02 0.0045 24.7 4.8 59 133-203 61-123 (354)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.94 E-value=1.4e-25 Score=168.87 Aligned_cols=142 Identities=20% Similarity=0.210 Sum_probs=112.5
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHH
Q 026810 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (232)
Q Consensus 39 ~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (232)
+++++||||+|+|+.+..|++||+.+|+..+++|+++||++....... .. . .......+..+...
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~-----~~---------~-~~~~~~~~~~~~~~ 67 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTP-----AL---------D-PVLSELLDAEAAHA 67 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCG-----GG---------H-HHHHHHHHHHHHHH
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc-----cc---------c-cccHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999976432110 00 0 01112222233333
Q ss_pred HHHHHHhhhhhhhCCc-ceEEEEeeCCchHHHHHH-HHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEE
Q 026810 119 ATKAADLARPLKEAGF-PYKIHIVKDHDMRERLCL-EIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (232)
Q Consensus 119 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~~I~~-~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVl 196 (232)
++.++.+...+...++ ++++.+..|+ +.+.|++ ++++.++||||||+++++.+.++ ++||++++|+++++||||
T Consensus 68 ~~~l~~~~~~~~~~g~~~~~~~~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~---~~Gs~~~~vl~~~~~pVl 143 (146)
T 3s3t_A 68 KDAMRQRQQFVATTSAPNLKTEISYGI-PKHTIEDYAKQHPEIDLIVLGATGTNSPHRV---AVGSTTSYVVDHAPCNVI 143 (146)
T ss_dssp HHHHHHHHHHHTTSSCCCCEEEEEEEC-HHHHHHHHHHHSTTCCEEEEESCCSSCTTTC---SSCHHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHHhcCCcceEEEEecCC-hHHHHHHHHHhhcCCCEEEECCCCCCCcceE---EEcchHHHHhccCCCCEE
Confidence 3444445555555688 8999999986 5999999 99999999999999999999999 999999999999999999
Q ss_pred EEc
Q 026810 197 VVR 199 (232)
Q Consensus 197 iVp 199 (232)
+||
T Consensus 144 vV~ 146 (146)
T 3s3t_A 144 VIR 146 (146)
T ss_dssp EEC
T ss_pred EeC
Confidence 997
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.93 E-value=8.8e-25 Score=167.56 Aligned_cols=154 Identities=23% Similarity=0.232 Sum_probs=109.9
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCcc---CCCCCCCCCccccCcchhhhHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVL---FGADWGPLPQQQINSENASNIEHQKQLEDDFDT 116 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (232)
++++||||+|+|+.+..|++||+.+|+..+++|+++||++.... ....+.....+.... .....+.+.+..+.
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 79 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKS----VEEFENELKNKLTE 79 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC---------------------CHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccc----hhhhHHHHHHHHHH
Confidence 68999999999999999999999999999999999999975310 000000000000000 00000111222222
Q ss_pred HHHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEE
Q 026810 117 FTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (232)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVl 196 (232)
..++.++++...+...++++++.+..|+ +++.|++++++.++||||||+++++.+.++ ++||++++|+++++|||+
T Consensus 80 ~~~~~l~~~~~~~~~~g~~~~~~v~~G~-~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~---~~GSv~~~vl~~~~~pVl 155 (162)
T 1mjh_A 80 EAKNKMENIKKELEDVGFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIMGSHGKTNLKEI---LLGSVTENVIKKSNKPVL 155 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCSSCCTTC---SSCHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEcCCC-HHHHHHHHHHHcCCCEEEEcCCCCCCccce---EecchHHHHHHhCCCCEE
Confidence 2333333444444556888998888886 599999999999999999999999999999 999999999999999999
Q ss_pred EEcCC
Q 026810 197 VVRYP 201 (232)
Q Consensus 197 iVp~~ 201 (232)
+||++
T Consensus 156 vv~~~ 160 (162)
T 1mjh_A 156 VVKRK 160 (162)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 99964
No 3
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.93 E-value=1.8e-24 Score=167.17 Aligned_cols=153 Identities=19% Similarity=0.116 Sum_probs=106.6
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCC----ccccCcchhhhHHHHHHHHHH
Q 026810 38 SLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLP----QQQINSENASNIEHQKQLEDD 113 (232)
Q Consensus 38 ~~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 113 (232)
++++++||||+|+|+.+..|++||+.+|+..+++|+++||++........ .... ..... .....+...+..
T Consensus 2 ~~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~--- 76 (170)
T 2dum_A 2 IFMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELM-DGYSFFYDNAEIE-LKDIKEKLKEEA--- 76 (170)
T ss_dssp --CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC-------------C-CTTSHHHHHHHH---
T ss_pred ccccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccc-ccccccccccccc-HHHHHHHHHHHH---
Confidence 45789999999999999999999999999999999999998753221100 0000 00000 001111122222
Q ss_pred HHHHHHHHHHHhhhhhhhCCcceEE--EEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC
Q 026810 114 FDTFTATKAADLARPLKEAGFPYKI--HIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC 191 (232)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~ 191 (232)
+..+++ +...+...++++++ .+..|+ +++.|+++++++++||||||+++++.+.++ ++||++++|++++
T Consensus 77 -~~~l~~----~~~~~~~~g~~~~~~~~~~~g~-~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~---~~Gsv~~~vl~~~ 147 (170)
T 2dum_A 77 -SRKLQE----KAEEVKRAFRAKNVRTIIRFGI-PWDEIVKVAEEENVSLIILPSRGKLSLSHE---FLGSTVMRVLRKT 147 (170)
T ss_dssp -HHHHHH----HHHHHHHHTTCSEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCCCC--TT---CCCHHHHHHHHHC
T ss_pred -HHHHHH----HHHHHHHcCCceeeeeEEecCC-hHHHHHHHHHHcCCCEEEECCCCCCccccc---eechHHHHHHHhC
Confidence 222222 22223334778887 888876 599999999999999999999999999999 9999999999999
Q ss_pred CCcEEEEcCCCCC
Q 026810 192 VCPVVVVRYPDDK 204 (232)
Q Consensus 192 ~~PVliVp~~~~~ 204 (232)
+||||+||.....
T Consensus 148 ~~PVlvv~~~~~~ 160 (170)
T 2dum_A 148 KKPVLIIKEVDEN 160 (170)
T ss_dssp SSCEEEECCCCCC
T ss_pred CCCEEEEccCCcc
Confidence 9999999975443
No 4
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.92 E-value=1.9e-24 Score=182.89 Aligned_cols=170 Identities=15% Similarity=0.094 Sum_probs=127.8
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHH
Q 026810 38 SLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (232)
Q Consensus 38 ~~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (232)
|+++++|||++|+|+.+..|++||+.+|+..+++|+++|+++....... ... .....+.+.+.....
T Consensus 4 M~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~ 70 (319)
T 3olq_A 4 MEKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMT--TLL-----------SPDERNAMRKGVINQ 70 (319)
T ss_dssp -CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCT--TTS-----------CHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhc--ccc-----------ChhhHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999864322111 000 011112222222222
Q ss_pred HHHHHHHhhhhhhhCCcceEEEEe-eCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEE
Q 026810 118 TATKAADLARPLKEAGFPYKIHIV-KDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (232)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVl 196 (232)
.++.++++...+...++++++.+. .|+ +.+.|++++++.++||||||+++++.+.++ ++||++++|+++++||||
T Consensus 71 ~~~~l~~~~~~~~~~~v~~~~~~~~~g~-~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~---~~Gs~~~~vl~~~~~PVl 146 (319)
T 3olq_A 71 KTAWIKQQARYYLEAGIQIDIKVIWHNR-PYEAIIEEVITDKHDLLIKMAHQHDKLGSL---IFTPLDWQLLRKCPAPVW 146 (319)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECSC-HHHHHHHHHHHHTCSEEEEEEBCC--CCSC---BCCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEecCC-hHHHHHHHHHhcCCCEEEEecCcCchhhcc---cccccHHHHHhcCCCCEE
Confidence 333344444444456899999999 555 699999999999999999999999999998 999999999999999999
Q ss_pred EEcCCCCCCCCCceEEecCCCCCCCchH
Q 026810 197 VVRYPDDKDDGEPLVKVKEPEKDDEDDH 224 (232)
Q Consensus 197 iVp~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (232)
+||........+++++++.+.+++.++.
T Consensus 147 vv~~~~~~~~~~Ilva~D~s~~~~~~~~ 174 (319)
T 3olq_A 147 MVKDKEWPEYGTIVVAANLSNEESYHDA 174 (319)
T ss_dssp EEESSCCCTTCEEEEECCCSCCSTHHHH
T ss_pred EecCcccccCCeEEEEECCCCcchhHHH
Confidence 9998776667899999999887654443
No 5
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.92 E-value=6.6e-25 Score=183.72 Aligned_cols=161 Identities=15% Similarity=0.162 Sum_probs=120.2
Q ss_pred CCCCCCCCcCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecCChh-------HHHHHHHHHHHhCCCCCEEEE
Q 026810 2 NPQQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDE-------SAFAVRWAVHHYLRPGDAVIL 74 (232)
Q Consensus 2 ~~~~~~~~~~~~~~pvl~v~~~~~~~~~~~~~~~~~~~~~~~ILv~vD~s~~-------s~~al~~A~~la~~~~~~l~l 74 (232)
.++.+++++++++|||+++|..... .+++||||+|+|+. +..++++|..+|+..+++|++
T Consensus 108 ~gs~~~~vl~~~~~PVlvv~~~~~~-------------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~l 174 (290)
T 3mt0_A 108 LTPDDWKLLRFAPCPVLMTKTARPW-------------TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHV 174 (290)
T ss_dssp CCHHHHHHHHHCSSCEEEECCCSCS-------------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCHHHHHHHhcCCCCEEEecCCCCC-------------CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3566788999999999999943222 48999999999998 999999999999999999999
Q ss_pred EEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCc-ceEEEEeeCCchHHHHHHH
Q 026810 75 VHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGF-PYKIHIVKDHDMRERLCLE 153 (232)
Q Consensus 75 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~~I~~~ 153 (232)
+||++....... .+ .....+...+..+..+++..++ .++ .++..+..|+ +.+.|+++
T Consensus 175 l~v~~~~~~~~~----~~----------~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~v~~g~-~~~~I~~~ 232 (290)
T 3mt0_A 175 ISAHPSPMLSSA----DP----------TFQLSETIEARYREACRTFQAE-------YGFSDEQLHIEEGP-ADVLIPRT 232 (290)
T ss_dssp EEEEC-----------------------CHHHHHHHHHHHHHHHHHHHHH-------HTCCTTTEEEEESC-HHHHHHHH
T ss_pred EEEecCcccccc----Cc----------hhHHHHHHHHHHHHHHHHHHHH-------cCCCcceEEEeccC-HHHHHHHH
Confidence 999976432110 00 0011122222222222222221 255 3566777775 69999999
Q ss_pred HHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 154 IERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 154 a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
++++++||||||+++++.+.++ ++||++++|+++++||||+||+
T Consensus 233 a~~~~~dLiVmG~~g~~~~~~~---~~Gsv~~~vl~~~~~pVLvv~~ 276 (290)
T 3mt0_A 233 AQKLDAVVTVIGTVARTGLSGA---LIGNTAEVVLDTLESDVLVLKP 276 (290)
T ss_dssp HHHHTCSEEEEECCSSCCGGGC---CSCHHHHHHHTTCSSEEEEECC
T ss_pred HHhcCCCEEEECCCCCcCCcce---ecchHHHHHHhcCCCCEEEECC
Confidence 9999999999999999999999 9999999999999999999986
No 6
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.92 E-value=2.1e-24 Score=163.30 Aligned_cols=145 Identities=20% Similarity=0.214 Sum_probs=96.1
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHH
Q 026810 38 SLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (232)
Q Consensus 38 ~~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (232)
||++++||||+|+|+.+..+++||+.+|+..+++|+++||++........+....... .....+...+..++.++
T Consensus 3 m~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~-- 77 (150)
T 3tnj_A 3 MSVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLD---TETTYDAMLDVEKQKLS-- 77 (150)
T ss_dssp -CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSS---SCCCHHHHHHHHHHHHH--
T ss_pred CCccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcC---HHHHHHHHHHHHHHHHH--
Confidence 6689999999999999999999999999999999999999976432110111111100 01112222222222222
Q ss_pred HHHHHHHhhhhhhhCCcc-eEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEE
Q 026810 118 TATKAADLARPLKEAGFP-YKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (232)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~-v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVl 196 (232)
+..++ + +++ +++.+..|+ +++.|+++++++++||||||+++++.+. + ++||++++|+++++||||
T Consensus 78 --~~~~~----~---~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~-~---~~Gs~~~~vl~~~~~pVl 143 (150)
T 3tnj_A 78 --QIGNT----L---GIDPAHRWLVWGE-PREEIIRIAEQENVDLIVVGSHGRHGLA-L---LLGSTANSVLHYAKCDVL 143 (150)
T ss_dssp --HHHHH----H---TCCGGGEEEEESC-HHHHHHHHHHHTTCSEEEEEEC------------CCCHHHHHHHHCSSEEE
T ss_pred --HHHHH----c---CCCcceEEEecCC-HHHHHHHHHHHcCCCEEEEecCCCCCcC-e---EecchHHHHHHhCCCCEE
Confidence 22211 1 444 467777776 5999999999999999999999999998 8 999999999999999999
Q ss_pred EEcCC
Q 026810 197 VVRYP 201 (232)
Q Consensus 197 iVp~~ 201 (232)
+||+.
T Consensus 144 vv~~~ 148 (150)
T 3tnj_A 144 AVRLR 148 (150)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99975
No 7
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.92 E-value=5.6e-24 Score=158.73 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=106.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHh-CCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHH-HHH
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHY-LRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFD-TFT 118 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la-~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 118 (232)
+++||||+|+|+.+..+++||+.+| +..+++|+++||++....... .........+..+ ...
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 64 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGE----------------AVLAAYDEIEMKEEEKA 64 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHH----------------HHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccc----------------cccCcHHHHHHHHHHHH
Confidence 5899999999999999999999999 999999999999976432100 0000111122222 333
Q ss_pred HHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 119 ATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
++.++++...+...++++++.+..|+ +.+.|+++++ ++||||||+++++.+.++ + ||++++|+++++||||+|
T Consensus 65 ~~~l~~~~~~~~~~g~~~~~~v~~g~-~~~~I~~~a~--~~dliV~G~~~~~~~~~~---~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 65 KLLTQKFSTFFTEKGINPFVVIKEGE-PVEMVLEEAK--DYNLLIIGSSENSFLNKI---F-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEEESC-HHHHHHHHHT--TCSEEEEECCTTSTTSSC---C-CCTTCHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecCC-hHHHHHHHHh--cCCEEEEeCCCcchHHHH---h-CcHHHHHHhcCCCCEEEe
Confidence 34444455555556899999999986 5999999999 899999999999999998 8 999999999999999999
Q ss_pred c
Q 026810 199 R 199 (232)
Q Consensus 199 p 199 (232)
|
T Consensus 138 ~ 138 (138)
T 3idf_A 138 K 138 (138)
T ss_dssp C
T ss_pred C
Confidence 7
No 8
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.92 E-value=5.6e-24 Score=162.14 Aligned_cols=140 Identities=14% Similarity=0.140 Sum_probs=107.0
Q ss_pred CCCCcEEEEEec--CChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHH
Q 026810 38 SLARRKIGVAVD--LSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFD 115 (232)
Q Consensus 38 ~~~~~~ILv~vD--~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (232)
++++++||||+| +|+.+..++++|+.+|+..+++|+++||++...... +... .....+...+..+
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--~~~~-----------~~~~~~~~~~~~~ 78 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINI--FDSL-----------TPSKIQAKRKHVE 78 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTC--CCSS-----------HHHHHHHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccc--cccC-----------CHHHHHHHHHHHH
Confidence 457999999999 999999999999999999999999999997643211 1111 1122222222222
Q ss_pred HHHHHHHHHhhhhhhhCCc-ceEEEEee-CCchHHHHHHH-HHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCC
Q 026810 116 TFTATKAADLARPLKEAGF-PYKIHIVK-DHDMRERLCLE-IERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV 192 (232)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~-g~~~~~~I~~~-a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~ 192 (232)
. .++.+...+...++ .+++.+.. |+ +.+.|+++ +++.++||||||+++++.+. . ++||++++|+++++
T Consensus 79 ~----~l~~~~~~~~~~g~~~~~~~v~~~g~-~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~---~~Gs~~~~vl~~a~ 149 (156)
T 3fg9_A 79 D----VVAEYVQLAEQRGVNQVEPLVYEGGD-VDDVILEQVIPEFKPDLLVTGADTEFPHS-K---IAGAIGPRLARKAP 149 (156)
T ss_dssp H----HHHHHHHHHHHHTCSSEEEEEEECSC-HHHHHHHTHHHHHCCSEEEEETTCCCTTS-S---SCSCHHHHHHHHCS
T ss_pred H----HHHHHHHHHHHcCCCceEEEEEeCCC-HHHHHHHHHHHhcCCCEEEECCCCCCccc-e---eecchHHHHHHhCC
Confidence 2 33333333444578 58999999 65 69999999 99999999999999999886 6 89999999999999
Q ss_pred CcEEEEc
Q 026810 193 CPVVVVR 199 (232)
Q Consensus 193 ~PVliVp 199 (232)
||||+||
T Consensus 150 ~PVlvV~ 156 (156)
T 3fg9_A 150 ISVIVVR 156 (156)
T ss_dssp SEEEEEC
T ss_pred CCEEEeC
Confidence 9999997
No 9
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.92 E-value=2e-24 Score=162.67 Aligned_cols=144 Identities=20% Similarity=0.220 Sum_probs=105.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
|+++||||+|+|+.+..|++||+.+|+..+++|+++||++............+..... ...+...+..+
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------- 69 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLD---IPDDALKDYAT-------- 69 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGC---CCTTHHHHHHH--------
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhh---hHHHHHHHHHH--------
Confidence 5899999999999999999999999999999999999997643111000000111100 00111111111
Q ss_pred HHHHHhhhhhhhCCcce---EEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEE
Q 026810 120 TKAADLARPLKEAGFPY---KIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v---~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVl 196 (232)
+.++++...+...++++ ++.+..|+ +.+.|+++++++++||||||+++++.+.++ ++||++++++++++||||
T Consensus 70 ~~l~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~---~~Gs~~~~vl~~~~~pVl 145 (147)
T 3hgm_A 70 EIAVQAKTRATELGVPADKVRAFVKGGR-PSRTIVRFARKRECDLVVIGAQGTNGDKSL---LLGSVAQRVAGSAHCPVL 145 (147)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEEESC-HHHHHHHHHHHTTCSEEEECSSCTTCCSCC---CCCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHhcCCCccceEEEEecCC-HHHHHHHHHHHhCCCEEEEeCCCCccccce---eeccHHHHHHhhCCCCEE
Confidence 11222233334447777 88888886 599999999999999999999999999999 999999999999999999
Q ss_pred EE
Q 026810 197 VV 198 (232)
Q Consensus 197 iV 198 (232)
+|
T Consensus 146 vV 147 (147)
T 3hgm_A 146 VV 147 (147)
T ss_dssp EC
T ss_pred EC
Confidence 86
No 10
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.92 E-value=1.3e-24 Score=183.86 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=125.0
Q ss_pred CCCCCCCCcCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecCCh-------hHHHHHHHHHHHhCCC--CCEE
Q 026810 2 NPQQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSD-------ESAFAVRWAVHHYLRP--GDAV 72 (232)
Q Consensus 2 ~~~~~~~~~~~~~~pvl~v~~~~~~~~~~~~~~~~~~~~~~~ILv~vD~s~-------~s~~al~~A~~la~~~--~~~l 72 (232)
.++.+++++++++||||++|..... .+++||||+|+|+ .+..++++|..+|+.. +++|
T Consensus 130 ~Gs~~~~vl~~~~~PVlvv~~~~~~-------------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l 196 (319)
T 3olq_A 130 FTPLDWQLLRKCPAPVWMVKDKEWP-------------EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDV 196 (319)
T ss_dssp CCHHHHHHHHHCSSCEEEEESSCCC-------------TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCE
T ss_pred ccccHHHHHhcCCCCEEEecCcccc-------------cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeE
Confidence 3567788999999999999965433 5899999999999 6799999999999998 9999
Q ss_pred EEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCc-ceEEEEeeCCchHHHHH
Q 026810 73 ILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGF-PYKIHIVKDHDMRERLC 151 (232)
Q Consensus 73 ~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~~I~ 151 (232)
+++||++....... ...+. .. .....+...+..+..+++.. . ..++ .++..+..|+ +.+.|+
T Consensus 197 ~ll~v~~~~~~~~~--~~~~~--~~-----~~~~~~~~~~~~~~~l~~~~----~---~~~~~~~~~~v~~g~-~~~~I~ 259 (319)
T 3olq_A 197 HLLSAYPVAPINIA--IELPD--FD-----PNLYNNALRGQHLIAMKELR----Q---KFSIPEEKTHVKEGL-PEQVIP 259 (319)
T ss_dssp EEEEEECCCSCSCC--TTCTT--CC-----HHHHHHHHHHHHHHHHHHHH----H---HTTCCGGGEEEEESC-HHHHHH
T ss_pred EEEEeecCcchhhh--ccCCc--cc-----HHHHHHHHHHHHHHHHHHHH----H---HhCCCcccEEEecCC-cHHHHH
Confidence 99999976432210 11110 00 11122222222222222222 1 2243 3556677776 599999
Q ss_pred HHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 152 LEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 152 ~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
++++++++||||||+++++.+.++ ++||++++|+++++||||+||+..
T Consensus 260 ~~a~~~~~dLiV~G~~g~~~~~~~---~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 260 QVCEELNAGIVVLGILGRTGLSAA---FLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp HHHHHTTEEEEEEECCSCCSTHHH---HHHHHHHHHHTTCCSEEEEECCTT
T ss_pred HHHHHhCCCEEEEeccCccCCccc---cccHHHHHHHhhCCCCEEEECCCC
Confidence 999999999999999999999999 999999999999999999999754
No 11
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.91 E-value=4.6e-24 Score=164.36 Aligned_cols=143 Identities=17% Similarity=0.079 Sum_probs=103.2
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEE--EEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHH
Q 026810 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILV--HVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDT 116 (232)
Q Consensus 39 ~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (232)
.++++||||+|+|+.+..|++||+.+|+ .+++|+++ ||++....... .. .. .....+...+..
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~-~~-~~----------~~~~~~~~~~~~-- 79 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAA-DI-LK----------DESYKVTGTAPI-- 79 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------------------CCTH--
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccc-cc-cc----------cHHHHHHHHHHH--
Confidence 3689999999999999999999999999 99999999 77654321000 00 00 000001111111
Q ss_pred HHHHHHHHhhhhhhhCCcc-eEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcE
Q 026810 117 FTATKAADLARPLKEAGFP-YKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPV 195 (232)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~-v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PV 195 (232)
++.++.+...+...+++ +++.+..|+ +.+.|++++++.++||||||+++++.+.++ ++||++++|+++++|||
T Consensus 80 --~~~l~~~~~~~~~~gv~~v~~~v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~---~lGSva~~vl~~a~~PV 153 (163)
T 1tq8_A 80 --YEILHDAKERAHNAGAKNVEERPIVGA-PVDALVNLADEEKADLLVVGNVGLSTIAGR---LLGSVPANVSRRAKVDV 153 (163)
T ss_dssp --HHHHHHHHHHHHTTTCCEEEEEEECSS-HHHHHHHHHHHTTCSEEEEECCCCCSHHHH---HTBBHHHHHHHHTTCEE
T ss_pred --HHHHHHHHHHHHHcCCCeEEEEEecCC-HHHHHHHHHHhcCCCEEEECCCCCCcccce---eeccHHHHHHHhCCCCE
Confidence 22222233333445787 899888886 599999999999999999999999999999 99999999999999999
Q ss_pred EEEcCCC
Q 026810 196 VVVRYPD 202 (232)
Q Consensus 196 liVp~~~ 202 (232)
|+||.+.
T Consensus 154 lvV~~~~ 160 (163)
T 1tq8_A 154 LIVHTTE 160 (163)
T ss_dssp EEECCC-
T ss_pred EEEeCCC
Confidence 9999654
No 12
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.91 E-value=5.8e-24 Score=162.51 Aligned_cols=133 Identities=19% Similarity=0.186 Sum_probs=102.2
Q ss_pred CCCCCcEEEEEecC-ChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHH
Q 026810 37 TSLARRKIGVAVDL-SDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFD 115 (232)
Q Consensus 37 ~~~~~~~ILv~vD~-s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (232)
..|++++||||+|+ |+.+..|+++|+.+|+..+++|+++||++.... . .+...+. .+
T Consensus 20 ~~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~-------~-----------~~~~~~~----~~ 77 (155)
T 3dlo_A 20 QGMIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR-------T-----------KDEDIIE----AK 77 (155)
T ss_dssp --CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT-------S-----------CHHHHHH----HH
T ss_pred cccccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc-------c-----------cHHHHHH----HH
Confidence 45689999999999 999999999999999999999999999974321 0 1111111 11
Q ss_pred HHHHHHHHHhhhhhhhCCcceEEE--EeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCC
Q 026810 116 TFTATKAADLARPLKEAGFPYKIH--IVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVC 193 (232)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~v~~~--~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~ 193 (232)
..+ +.+.+.+...++++++. +..| ++++.|++++++.++||||||+++++.+.++ ++||++++|+++++|
T Consensus 78 ~~l----~~~~~~~~~~g~~~~~~~~v~~G-~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~---~lGSv~~~vl~~a~~ 149 (155)
T 3dlo_A 78 ETL----SWAVSIIRKEGAEGEEHLLVRGK-EPPDDIVDFADEVDAIAIVIGIRKRSPTGKL---IFGSVARDVILKANK 149 (155)
T ss_dssp HHH----HHHHHHHHHTTCCEEEEEEESSS-CHHHHHHHHHHHTTCSEEEEECCEECTTSCE---ECCHHHHHHHHHCSS
T ss_pred HHH----HHHHHHHHhcCCCceEEEEecCC-CHHHHHHHHHHHcCCCEEEECCCCCCCCCCE---EeccHHHHHHHhCCC
Confidence 122 22222333346776654 3345 4699999999999999999999999999999 999999999999999
Q ss_pred cEEEEc
Q 026810 194 PVVVVR 199 (232)
Q Consensus 194 PVliVp 199 (232)
|||+|+
T Consensus 150 PVLvVr 155 (155)
T 3dlo_A 150 PVICIK 155 (155)
T ss_dssp CEEEEC
T ss_pred CEEEeC
Confidence 999996
No 13
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.91 E-value=8e-24 Score=157.88 Aligned_cols=136 Identities=23% Similarity=0.195 Sum_probs=100.9
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
|+++||||+|+|+.+..++++|..+|+..+++|+++||++.... .+..... ++..+...+..+..++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~---~~~~~~~----------~~~~~~~~~~~~~~l~ 67 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPD---YLGEPFF----------EEALRRRLERAEGVLE 67 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC---------------------------CHHHHHHHHHHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCc---cccccch----------HHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999864221 0110000 0001111111222222
Q ss_pred HHHHHhhhhhhhCCc-ceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 120 TKAADLARPLKEAGF-PYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
+..+. .++ ++++.+..|+ +.+.|+++++++++||||||+++++.+.++ ++||++++|+++++|||++|
T Consensus 68 ~~~~~-------~g~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~---~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 68 EARAL-------TGVPKEDALLLEGV-PAEAILQAARAEKADLIVMGTRGLGALGSL---FLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHHHH-------HCCCGGGEEEEESS-HHHHHHHHHHHTTCSEEEEESSCTTCCSCS---SSCHHHHHHHHHCSSCEEEE
T ss_pred HHHHH-------cCCCccEEEEEecC-HHHHHHHHHHHcCCCEEEECCCCCchhhhh---hhccHHHHHHhcCCCCEEEe
Confidence 21111 277 7778888886 599999999999999999999999999999 99999999999999999999
Q ss_pred c
Q 026810 199 R 199 (232)
Q Consensus 199 p 199 (232)
|
T Consensus 137 ~ 137 (137)
T 2z08_A 137 R 137 (137)
T ss_dssp C
T ss_pred C
Confidence 7
No 14
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.91 E-value=7.6e-24 Score=178.78 Aligned_cols=167 Identities=21% Similarity=0.213 Sum_probs=123.3
Q ss_pred CCCCCCCCcCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 026810 2 NPQQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (232)
Q Consensus 2 ~~~~~~~~~~~~~~pvl~v~~~~~~~~~~~~~~~~~~~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~ 81 (232)
.++.+++++++++|||++||..... .....+++|||++|+|+.+..++++|..+|+..+++|+++||++..
T Consensus 141 ~Gs~~~~vl~~~~~PVlvv~~~~~~---------~~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~ 211 (309)
T 3cis_A 141 LGSVSSGLLRHAHCPVVIIHDEDSV---------MPHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDV 211 (309)
T ss_dssp SCHHHHHHHHHCSSCEEEECTTCCC---------SCSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSS
T ss_pred cCcHHHHHHHhCCCCEEEEcCCccc---------CCCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecc
Confidence 3567788999999999999955321 0011478999999999999999999999999999999999998653
Q ss_pred ccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCE
Q 026810 82 VLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSA 161 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dl 161 (232)
... ..+. .. .++ ..+..+..+++.+..+...+ .++.+++.+..|+ +++.|+++++ ++||
T Consensus 212 ~~~-----~~~~--~~-----~~~----~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~g~-~~~~I~~~a~--~adl 270 (309)
T 3cis_A 212 DVS-----EWPG--ID-----WPA----TQSMAEQVLAERLAGWQERY--PNVAITRVVVRDQ-PARQLVQRSE--EAQL 270 (309)
T ss_dssp CCT-----TCSS--CC-----HHH----HHHHHHHHHHHHHTTHHHHC--TTSCEEEEEESSC-HHHHHHHHHT--TCSE
T ss_pred ccc-----CCCc--cc-----HHH----HHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEcCC-HHHHHHHhhC--CCCE
Confidence 221 0000 00 111 11222222222222222111 3788888888875 6999999997 8999
Q ss_pred EEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 162 VIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 162 IV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
||||+++++.+.++ ++||++++|+++++||||+||+.
T Consensus 271 iV~G~~~~~~~~~~---l~Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 271 VVVGSRGRGGYAGM---LVGSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp EEEESSCSSCCTTC---SSCHHHHHHHHHCSSCEEEECC-
T ss_pred EEECCCCCCCcccc---ccCcHHHHHHhcCCCCEEEeCCC
Confidence 99999999999999 99999999999999999999963
No 15
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.91 E-value=3.6e-24 Score=179.48 Aligned_cols=150 Identities=20% Similarity=0.275 Sum_probs=123.4
Q ss_pred CCCCCCCcCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCc
Q 026810 3 PQQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSV 82 (232)
Q Consensus 3 ~~~~~~~~~~~~~pvl~v~~~~~~~~~~~~~~~~~~~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~ 82 (232)
++.+++++++++|||++||..... ...+++|||++|+|+.+..++++|..+|+..+++|+++||.+...
T Consensus 143 Gs~~~~vl~~~~~PVlvv~~~~~~-----------~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~ 211 (294)
T 3loq_A 143 GSVSEGVLHDSKVPVYIFKHDMVV-----------NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD 211 (294)
T ss_dssp CCHHHHHHHHCSSCEEEECCCTTT-----------TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC
T ss_pred ccHHHHHHhcCCCCEEEecCcccc-----------CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch
Confidence 567888999999999999965421 115799999999999999999999999999999999999986421
Q ss_pred cCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEE
Q 026810 83 LFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAV 162 (232)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlI 162 (232)
. .+.+++ +...+...++++++.+..|+ +.+.|++++++.++|||
T Consensus 212 --------------------~---~~~l~~------------~~~~l~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dLl 255 (294)
T 3loq_A 212 --------------------K---TADLRV------------MEEVIGAEGIEVHVHIESGT-PHKAILAKREEINATTI 255 (294)
T ss_dssp --------------------C---HHHHHH------------HHHHHHHTTCCEEEEEECSC-HHHHHHHHHHHTTCSEE
T ss_pred --------------------H---HHHHHH------------HHHHHHHcCCcEEEEEecCC-HHHHHHHHHHhcCcCEE
Confidence 0 111111 11222334788888888875 69999999999999999
Q ss_pred EEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 163 IMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 163 V~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
|||+++++.+.++ ++||++++++++++||||+||+..
T Consensus 256 V~G~~~~~~~~~~---~~Gs~~~~vl~~~~~pvLvv~~~~ 292 (294)
T 3loq_A 256 FMGSRGAGSVMTM---ILGSTSESVIRRSPVPVFVCKRGD 292 (294)
T ss_dssp EEECCCCSCHHHH---HHHCHHHHHHHHCSSCEEEECSCT
T ss_pred EEeCCCCCCccce---eeCcHHHHHHhcCCCCEEEECCCC
Confidence 9999999999999 999999999999999999999754
No 16
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.91 E-value=2.6e-23 Score=161.47 Aligned_cols=151 Identities=23% Similarity=0.365 Sum_probs=97.5
Q ss_pred CCcEEEEEecCCh---------hHHHHHHHHHHHhCC---CCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHH
Q 026810 40 ARRKIGVAVDLSD---------ESAFAVRWAVHHYLR---PGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQ 107 (232)
Q Consensus 40 ~~~~ILv~vD~s~---------~s~~al~~A~~la~~---~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (232)
.+++||||+|+|+ .+..|++||+.++.+ .+++|+++||++............. . .....
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~---~------~~~~~ 74 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIY---A------SPEDF 74 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCC---C------SHHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeeccccccccccccc---C------CHHHH
Confidence 5799999999999 999999999998744 5899999999864321100000000 0 00001
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHH
Q 026810 108 KQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYC 187 (232)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~v 187 (232)
+.+.+......++.++.+...+...++++++++..|+ +.+.|+++++++++||||||+++++.+.++ ++||++++|
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~---~~Gsva~~v 150 (175)
T 2gm3_A 75 RDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGD-PKDVICQEVKRVRPDFLVVGSRGLGRFQKV---FVGTVSAFC 150 (175)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEEEEESC-HHHHHHHHHHHHCCSEEEEEECCCC-----------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCC-HHHHHHHHHHHhCCCEEEEeCCCCChhhhh---hcCchHHHH
Confidence 1111111111222233333333444888898888886 599999999999999999999999999999 999999999
Q ss_pred hccCCCcEEEEcCCCC
Q 026810 188 VHHCVCPVVVVRYPDD 203 (232)
Q Consensus 188 l~~~~~PVliVp~~~~ 203 (232)
+++++||||+||....
T Consensus 151 l~~a~~pVlvv~~~~~ 166 (175)
T 2gm3_A 151 VKHAECPVMTIKRNAD 166 (175)
T ss_dssp HHHCSSCEEEEECCGG
T ss_pred HhCCCCCEEEEcCCcC
Confidence 9999999999997543
No 17
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.90 E-value=1.3e-23 Score=176.11 Aligned_cols=167 Identities=16% Similarity=0.098 Sum_probs=122.0
Q ss_pred CCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHH
Q 026810 30 PAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQ 109 (232)
Q Consensus 30 ~~~~~~~~~~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (232)
+.....++|||+++|||++|+|+.+..|++||+.+|+..+++|+++||++.........+.. .....+.
T Consensus 11 ~~~~~~~~m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~-----------~~~~~~~ 79 (294)
T 3loq_A 11 VDLGTENLYFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGID-----------IDHYIDE 79 (294)
T ss_dssp ------CCSSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCC-----------TTHHHHH
T ss_pred cccCcchHHHhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCccccccccccc-----------HHHHHHH
Confidence 34455667889999999999999999999999999999999999999997654321110000 1111222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhCCcceEE-EEe-eCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHH
Q 026810 110 LEDDFDTFTATKAADLARPLKEAGFPYKI-HIV-KDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYC 187 (232)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~-~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~v 187 (232)
..+..+. .++++...+...++++++ .+. .|+ +.+.| ++++.++||||||+++++.+.++ ++||+++++
T Consensus 80 ~~~~~~~----~l~~~~~~~~~~g~~~~~~~v~~~g~-~~~~I--~a~~~~~DliV~G~~g~~~~~~~---~~Gs~~~~v 149 (294)
T 3loq_A 80 MSEKAEE----VLPEVAQKIEAAGIKAEVIKPFPAGD-PVVEI--IKASENYSFIAMGSRGASKFKKI---LLGSVSEGV 149 (294)
T ss_dssp HHHHHHH----HHHHHHHHHHHTTCEEEECSSCCEEC-HHHHH--HHHHTTSSEEEEECCCCCHHHHH---HHCCHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHcCCCcceeEeeccCC-hhHhe--eeccCCCCEEEEcCCCCccccce---eeccHHHHH
Confidence 2222222 233333344455888888 667 665 58888 89999999999999999999998 999999999
Q ss_pred hccCCCcEEEEcCCCC--CCCCCceEEecCCC
Q 026810 188 VHHCVCPVVVVRYPDD--KDDGEPLVKVKEPE 217 (232)
Q Consensus 188 l~~~~~PVliVp~~~~--~~~~~~~~~~~~~~ 217 (232)
+++++|||++||.... ....++++.++.+.
T Consensus 150 l~~~~~PVlvv~~~~~~~~~~~~Ilv~~d~s~ 181 (294)
T 3loq_A 150 LHDSKVPVYIFKHDMVVNSLFDRVLVAYDFSK 181 (294)
T ss_dssp HHHCSSCEEEECCCTTTTCTTSEEEEECCSSH
T ss_pred HhcCCCCEEEecCccccCccCCEEEEEECCCH
Confidence 9999999999998763 55688999998764
No 18
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.90 E-value=2.2e-23 Score=174.46 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=121.0
Q ss_pred CCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHH
Q 026810 37 TSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDT 116 (232)
Q Consensus 37 ~~~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (232)
+|+++++|||++|+|+.+..+++||+.+|+..+++|+++|+.++. . . .+.+++
T Consensus 3 ~M~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~----------------~----~---~~~l~~---- 55 (290)
T 3mt0_A 3 AMQAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRR----------------D----H---SAALND---- 55 (290)
T ss_dssp TTTTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSS----------------C----C---HHHHHH----
T ss_pred hhhhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCcH----------------H----H---HHHHHH----
Confidence 466799999999999999999999999999999999999998520 0 1 111211
Q ss_pred HHHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEE
Q 026810 117 FTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (232)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVl 196 (232)
+...+...++++++.+..++++.+.|++++++.++||||||+++++.+.++ ++||++++++++++||||
T Consensus 56 --------~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~---~~gs~~~~vl~~~~~PVl 124 (290)
T 3mt0_A 56 --------LAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKA---ILTPDDWKLLRFAPCPVL 124 (290)
T ss_dssp --------HHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTT---SCCHHHHHHHHHCSSCEE
T ss_pred --------HHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhc---ccCHHHHHHHhcCCCCEE
Confidence 111122348899999987666799999999999999999999999999999 999999999999999999
Q ss_pred EEcCCCCCCCCCceEEecCCCCCCCc
Q 026810 197 VVRYPDDKDDGEPLVKVKEPEKDDED 222 (232)
Q Consensus 197 iVp~~~~~~~~~~~~~~~~~~~~~~~ 222 (232)
+||........++++.++.++.++++
T Consensus 125 vv~~~~~~~~~~Ilva~D~s~~~~~~ 150 (290)
T 3mt0_A 125 MTKTARPWTGGKILAAVDVGNNDGEH 150 (290)
T ss_dssp EECCCSCSTTCEEEEEECTTCCSHHH
T ss_pred EecCCCCCCCCeEEEEECCCCcchhh
Confidence 99954444778999999998875443
No 19
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.89 E-value=3.6e-23 Score=155.09 Aligned_cols=140 Identities=19% Similarity=0.226 Sum_probs=99.4
Q ss_pred cEEEEEecCChh--HHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAVDLSDE--SAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 42 ~~ILv~vD~s~~--s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
++||||+|+|+. +..++++|+.+|+..+++|+++||++............. .. ....++ ..+. ..
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~----~~-~~~~~~----~~~~----~~ 68 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYT----AE-LPGMDE----LREG----SE 68 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC---------------------CHHH----HHHH----HH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCccccccccccc----ch-hhhHHH----HHHH----HH
Confidence 799999999999 999999999999999999999999976432211100000 00 000111 1111 11
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEc
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp 199 (232)
+.++++...+...+..+++.+..|+ +.+.|+++++++++||||||+++ +.+.++ ++||++++|+++++||||+||
T Consensus 69 ~~l~~~~~~~~~~~~~v~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~-~~~~~~---~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 69 TQLKEIAKKFSIPEDRMHFHVAEGS-PKDKILALAKSLPADLVIIASHR-PDITTY---LLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHHHHTTSCCCGGGEEEEEEESC-HHHHHHHHHHHTTCSEEEEESSC-TTCCSC---SSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHcCCCCCceEEEEEecC-hHHHHHHHHHHhCCCEEEEeCCC-CCCeee---eeccHHHHHHHhCCCCEEEeC
Confidence 1122222222223456788899886 59999999999999999999995 888888 999999999999999999997
No 20
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.87 E-value=1.5e-21 Score=164.62 Aligned_cols=167 Identities=22% Similarity=0.222 Sum_probs=117.9
Q ss_pred CCCCCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHH
Q 026810 34 PTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDD 113 (232)
Q Consensus 34 ~~~~~~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (232)
+.+...++++|||++|+|+.+..|++||+.+|+..+++|+++||++... .. +.... . ..+..+...+.
T Consensus 12 ~~~~~~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~-~~--~~~~~---~------~~~~~~~~~~~ 79 (309)
T 3cis_A 12 SMSSGNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEV-AT--WLEVP---L------PPGVLRWQQDH 79 (309)
T ss_dssp ------CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC-CC--TTCCC---C------CHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcc-cc--cccCC---C------CchhhHHHHHH
Confidence 4445567899999999999999999999999999999999999986321 11 11000 0 01111222222
Q ss_pred HHHHHHHHHHHhhhhhh-hCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCC
Q 026810 114 FDTFTATKAADLARPLK-EAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV 192 (232)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~ 192 (232)
.+..+++..+.+...+. ..++++++.+..|+ +.+.|+++++ ++||||||+++++.+.++ ++||++++|+++++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~I~~~a~--~~DliV~G~~g~~~~~~~---~~Gs~~~~vl~~~~ 153 (309)
T 3cis_A 80 GRHLIDDALKVVEQASLRAGPPTVHSEIVPAA-AVPTLVDMSK--DAVLMVVGCLGSGRWPGR---LLGSVSSGLLRHAH 153 (309)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCSCEEEEEESSC-HHHHHHHHGG--GEEEEEEESSCTTCCTTC---CSCHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEEEecCC-HHHHHHHHhc--CCCEEEECCCCCcccccc---ccCcHHHHHHHhCC
Confidence 22333332222222111 12788999888876 5999999987 799999999999999999 99999999999999
Q ss_pred CcEEEEcCCCC----CCCCCceEEecCCCC
Q 026810 193 CPVVVVRYPDD----KDDGEPLVKVKEPEK 218 (232)
Q Consensus 193 ~PVliVp~~~~----~~~~~~~~~~~~~~~ 218 (232)
|||++||.... ....++++.++.++.
T Consensus 154 ~PVlvv~~~~~~~~~~~~~~Ilv~~D~s~~ 183 (309)
T 3cis_A 154 CPVVIIHDEDSVMPHPQQAPVLVGVDGSSA 183 (309)
T ss_dssp SCEEEECTTCCCSCSSCCCCEEEECCSSHH
T ss_pred CCEEEEcCCcccCCCCCCCeEEEEeCCChH
Confidence 99999998653 345789999987653
No 21
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.87 E-value=1.1e-21 Score=161.99 Aligned_cols=165 Identities=15% Similarity=0.089 Sum_probs=117.8
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (232)
++||||+|+|+.+..+++||+.+|+..+++|+++||++.............. .... .....+...+..+...++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~ 75 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGA-LTVP----VPVLRTELERALALRGEAV 75 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC--------C----HHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchH-HHHH----HHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999998643211000000000 0000 0000111112222223333
Q ss_pred HHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCC-cccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 122 AADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG-AEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 122 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~-~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
++.+...+...++++++.+..|+ +.+.|+++ +.++||||||+++++ .+.++ ++||++++++++++|||++||.
T Consensus 76 l~~~~~~~~~~g~~~~~~~~~g~-~~~~I~~~--~~~~dliV~G~~g~~~~~~~~---~~Gs~~~~v~~~a~~PVlvv~~ 149 (268)
T 3ab8_A 76 LERVRQSALAAGVAVEAVLEEGV-PHEAILRR--ARAADLLVLGRSGEAHGDGFG---GLGSTADRVLRASPVPVLLAPG 149 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEC-HHHHHHHH--HTTCSEEEEESSCTTSCTTCC---SCCHHHHHHHHHCSSCEEEECS
T ss_pred HHHHHHHHHhCCCCeEEEEecCC-HHHHHHhh--ccCCCEEEEeccCCCcccccc---ccchhHHHHHHhCCCCEEEECC
Confidence 44444445556888999988886 59999998 789999999999998 89998 9999999999999999999997
Q ss_pred CCCCCCCCceEEecCCCC
Q 026810 201 PDDKDDGEPLVKVKEPEK 218 (232)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ 218 (232)
... ...++++.++.++.
T Consensus 150 ~~~-~~~~ilv~~d~s~~ 166 (268)
T 3ab8_A 150 EPV-ELEGALLGYDASES 166 (268)
T ss_dssp SCC-CCCEEEEECCSCHH
T ss_pred CCC-CCCEEEEEECCCHH
Confidence 665 56789999987654
No 22
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.87 E-value=4.3e-22 Score=164.49 Aligned_cols=140 Identities=13% Similarity=0.100 Sum_probs=112.5
Q ss_pred CCCCCCCCcCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 026810 2 NPQQTQPDSDHPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (232)
Q Consensus 2 ~~~~~~~~~~~~~~pvl~v~~~~~~~~~~~~~~~~~~~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~ 81 (232)
.++.+++++++++|||++||.... .+++||||+|+|+.+..++++|..++...+++|+++|+++..
T Consensus 129 ~Gs~~~~v~~~a~~PVlvv~~~~~--------------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~ 194 (268)
T 3ab8_A 129 LGSTADRVLRASPVPVLLAPGEPV--------------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP 194 (268)
T ss_dssp CCHHHHHHHHHCSSCEEEECSSCC--------------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH
T ss_pred cchhHHHHHHhCCCCEEEECCCCC--------------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH
Confidence 356778899999999999995432 368999999999999999999999999999999999998531
Q ss_pred ccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCE
Q 026810 82 VLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSA 161 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dl 161 (232)
+...+.+ +.+...+...++++++.+..|+ +.+.|++++++. ||
T Consensus 195 ----------------------~~~~~~l------------~~~~~~l~~~~~~~~~~~~~g~-~~~~i~~~a~~~--dl 237 (268)
T 3ab8_A 195 ----------------------ARAEAWA------------LEAEAYLRDHGVEASALVLGGD-AADHLLRLQGPG--DL 237 (268)
T ss_dssp ----------------------HHHHHHH------------HHHHHHHHHTTCCEEEEEECSC-HHHHHHHHCCTT--EE
T ss_pred ----------------------HHHHHHH------------HHHHHHHHHcCCceEEEEeCCC-hHHHHHHHHHhC--CE
Confidence 1111111 1122223334788888888775 699999999987 99
Q ss_pred EEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEc
Q 026810 162 VIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 162 IV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp 199 (232)
||||+ .+.++ ++||++++++++++||||+||
T Consensus 238 iV~G~----~~~~~---~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 238 LALGA----PVRRL---VFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp EEEEC----CCSCC---SSCCHHHHHHHHCSSCEEEEC
T ss_pred EEECC----ccccc---EeccHHHHHHhcCCCCEEEeC
Confidence 99999 57777 999999999999999999996
No 23
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.87 E-value=4.3e-22 Score=148.93 Aligned_cols=137 Identities=21% Similarity=0.209 Sum_probs=96.7
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC-CccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT-SVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (232)
|+++||||+|+|+.+..++++|..+|+..+++|+++||++. +... ...... ......+...+..+..
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~- 68 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLY----TGLIDV-------NMSSMQDRISTETQKA- 68 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGC----CCCEEH-------HHHHHTTCCCCHHHHH-
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhh----cccccc-------chHHHHHHHHHHHHHH-
Confidence 47999999999999999999999999999999999999853 2111 011000 0000000011111111
Q ss_pred HHHHHHhhhhhhhCCcce-EEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEE
Q 026810 119 ATKAADLARPLKEAGFPY-KIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (232)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v-~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVli 197 (232)
++.+.. ..++++ ++.+..|+ +.+.|++++++.++||||||++ ++.+.++ ||++++|+++++||||+
T Consensus 69 ---l~~~~~---~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~-~~~~~~l-----gs~~~~vl~~~~~pVlv 135 (141)
T 1jmv_A 69 ---LLDLAE---SVDYPISEKLSGSGD-LGQVLSDAIEQYDVDLLVTGHH-QDFWSKL-----MSSTRQVMNTIKIDMLV 135 (141)
T ss_dssp ---HHHHHH---HSSSCCCCEEEEEEC-HHHHHHHHHHHTTCCEEEEEEC-CCCHHHH-----HHHHHHHHTTCCSEEEE
T ss_pred ---HHHHHH---HcCCCceEEEEecCC-HHHHHHHHHHhcCCCEEEEeCC-Cchhhhh-----cchHHHHHhcCCCCEEE
Confidence 222211 225655 56666776 5999999999999999999999 8877663 79999999999999999
Q ss_pred EcCC
Q 026810 198 VRYP 201 (232)
Q Consensus 198 Vp~~ 201 (232)
||.+
T Consensus 136 v~~~ 139 (141)
T 1jmv_A 136 VPLR 139 (141)
T ss_dssp EECC
T ss_pred eeCC
Confidence 9964
No 24
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.83 E-value=6e-20 Score=136.81 Aligned_cols=134 Identities=11% Similarity=0.014 Sum_probs=93.8
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe-cC-CccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS-PT-SVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (232)
++++||||+|+|+.+..|++||+.+|+..+++|+++||+ +. +..........+.. . ...+.+.+..+..
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~ 73 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFP-----P----EIKEESKKRIERR 73 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCC-----T----HHHHHHHHHHHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCC-----h----HHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999998 53 11100000000000 0 1112222222233
Q ss_pred HHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEE
Q 026810 118 TATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (232)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVli 197 (232)
+++. +.+. +...+ ++++.+..|+ +.+.|++++++.++||||||++++ |++++|+++++||||+
T Consensus 74 l~~~-~~~~--~~~~~-~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~g~------------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 74 LREV-WEKL--TGSTE-IPGVEYRIGP-LSEEVKKFVEGKGYELVVWACYPS------------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp HHHH-HHHH--HSCCC-CCCEEEECSC-HHHHHHHHHTTSCCSEEEECSCCG------------GGTHHHHHHSSSEEEE
T ss_pred HHHH-HHHh--hccCC-cceEEEEcCC-HHHHHHHHHHhcCCCEEEEeCCCC------------chHHHHHHhCCCceEe
Confidence 3332 2210 23336 7778877776 599999999999999999999864 6899999999999999
Q ss_pred Ec
Q 026810 198 VR 199 (232)
Q Consensus 198 Vp 199 (232)
||
T Consensus 137 v~ 138 (138)
T 1q77_A 137 VK 138 (138)
T ss_dssp CC
T ss_pred eC
Confidence 86
No 25
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=93.91 E-value=0.12 Score=39.33 Aligned_cols=115 Identities=9% Similarity=-0.013 Sum_probs=71.3
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
+.++|++++-++..+.++++..-.+.+ .|.+++++-.-...... .. +.++
T Consensus 4 m~k~IllgvTGs~aa~k~~~ll~~L~~-~g~~V~vv~T~~A~~fi------------------~~---~~l~-------- 53 (175)
T 3qjg_A 4 MGENVLICLCGSVNSINISHYIIELKS-KFDEVNVIASTNGRKFI------------------NG---EILK-------- 53 (175)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHTT-TCSEEEEEECTGGGGGS------------------CH---HHHH--------
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEECcCHHHHh------------------hH---HHHH--------
Confidence 458999999999999998887666554 68887766543211100 00 0111
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEc
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp 199 (232)
.+. + ++... ..++ ....++.+++ +|++|+..-..+.+.++..|+-.+....++...++||+++|
T Consensus 54 ----~l~------~-~v~~~--~~~~-~~~hi~l~~~--aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~P 117 (175)
T 3qjg_A 54 ----QFC------D-NYYDE--FEDP-FLNHVDIANK--HDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFP 117 (175)
T ss_dssp ----HHC------S-CEECT--TTCT-TCCHHHHHHT--CSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEE
T ss_pred ----Hhc------C-CEEec--CCCC-ccccccccch--hCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEe
Confidence 111 2 11111 1111 1224455555 99999999888888887666666666677778899999999
Q ss_pred C
Q 026810 200 Y 200 (232)
Q Consensus 200 ~ 200 (232)
.
T Consensus 118 a 118 (175)
T 3qjg_A 118 N 118 (175)
T ss_dssp C
T ss_pred c
Confidence 3
No 26
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=92.26 E-value=0.16 Score=38.85 Aligned_cols=114 Identities=8% Similarity=-0.012 Sum_probs=70.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
|+++|++++-++-.+.++++....+.+ .|.+++++-.-...... .+ +.+
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T~~A~~fi----~~-----------------~~l--------- 49 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQ-HFDEVNILFSPSSKNFI----NT-----------------DVL--------- 49 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTT-TSSCEEEEECGGGGGTS----CG-----------------GGG---------
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEchhHHHHH----HH-----------------HHH---------
Confidence 457999999999999999988877755 58888776643221110 00 000
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCc-hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHD-MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~-~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
. .+. +. + .-.... +... .+.+++ +|++|+..-..+.+.++..|+-.+....++....+||+++
T Consensus 50 ------~-~l~--~~---~-~d~~~~~~~~h-i~l~~~--aD~~vIaPaTantlAKiA~GiaDnllt~~~la~~~pvvla 113 (181)
T 1g63_A 50 ------K-LFC--DN---L-YDEIKDPLLNH-INIVEN--HEYILVLPASANTINKIANGICDNLLTTVCLTGYQKLFIF 113 (181)
T ss_dssp ------G-GTS--SC---E-ECTTTCTTCCH-HHHHHT--CSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHTGGGEEEE
T ss_pred ------H-HHh--CC---c-ccccCCCCCcc-cccccc--CCEEEEecCCHHHHHHHHccccCcHHHHHHHHcCCCEEEE
Confidence 0 010 11 1 111110 0111 122444 9999999988888888866666666667777789999999
Q ss_pred cC
Q 026810 199 RY 200 (232)
Q Consensus 199 p~ 200 (232)
|.
T Consensus 114 Pa 115 (181)
T 1g63_A 114 PN 115 (181)
T ss_dssp EC
T ss_pred eC
Confidence 93
No 27
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=91.36 E-value=1.7 Score=32.93 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=45.0
Q ss_pred hCCcceEEEEeeCCchHHHHHHHH---HhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEI---ERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a---~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
.++++++..+.-.+..-+.+.+++ ++.+++.||.|..+...+.+. +.-.+..||+-||....
T Consensus 47 ~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGv-----------vAa~T~~PVIGVPv~s~ 111 (181)
T 4b4k_A 47 ELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM-----------VAAKTNLPVIGVPVQSK 111 (181)
T ss_dssp HTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH-----------HHTTCCSCEEEEECCCT
T ss_pred HcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhh-----------HHhcCCCCEEEEecCCC
Confidence 348999999988776555566555 457889999998765544333 45578999999998554
No 28
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=91.02 E-value=0.92 Score=34.13 Aligned_cols=62 Identities=24% Similarity=0.334 Sum_probs=43.8
Q ss_pred hCCcceEEEEeeCCchHHHHHHHH---HhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEI---ERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a---~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
.+|+++++.+.--+..-+.+.+++ ++.+++.||.|..+...+.+. +.-.+.+||+-||-...
T Consensus 37 ~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgv-----------vA~~t~~PVIgVPv~~~ 101 (173)
T 4grd_A 37 EFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGM-----------LAAKTTVPVLGVPVASK 101 (173)
T ss_dssp HTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHH-----------HHHHCCSCEEEEEECCT
T ss_pred HcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhh-----------heecCCCCEEEEEcCCC
Confidence 348999999888777555555554 457889999998765544333 45567999999996443
No 29
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=90.62 E-value=1.6 Score=35.24 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=27.6
Q ss_pred EEecCChhHHHHHHHHHHHhCCCCC--EEEEEEEec
Q 026810 46 VAVDLSDESAFAVRWAVHHYLRPGD--AVILVHVSP 79 (232)
Q Consensus 46 v~vD~s~~s~~al~~A~~la~~~~~--~l~ll~v~~ 79 (232)
+..-.++.+..|++.|.++....+. +|+++.+-+
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~ 66 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGP 66 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESC
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCc
Confidence 4556789999999999999876666 888888763
No 30
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=90.54 E-value=3.3 Score=33.16 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=26.1
Q ss_pred EecCChhHHHHHHHHHHHhCCCCC--EEEEEEEec
Q 026810 47 AVDLSDESAFAVRWAVHHYLRPGD--AVILVHVSP 79 (232)
Q Consensus 47 ~vD~s~~s~~al~~A~~la~~~~~--~l~ll~v~~ 79 (232)
+.-.++.+..|++.|.++... +. +++++.+-+
T Consensus 32 ~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~ 65 (252)
T 1efp_B 32 KMSMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGV 65 (252)
T ss_dssp CEEECHHHHHHHHHHHHHHTT-TSCSEEEEEEEES
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC
Confidence 344678999999999999876 66 899888864
No 31
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=90.26 E-value=2 Score=37.61 Aligned_cols=40 Identities=18% Similarity=-0.032 Sum_probs=35.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
.++|+|++.|-.+|..++..+..+....+.++.++||-..
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhg 57 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHM 57 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECT
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECC
Confidence 4789999999999999999888888777889999999753
No 32
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=90.14 E-value=4.6 Score=33.03 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=79.0
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (232)
-+|||++.........+++|..+.. ..+-++++++.+.... +...+.+ +
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~-~~G~ltv~~i~p~~~~--------------------~~l~~ql-~--------- 69 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITY-PKGSVKLLGLAGNTDK--------------------ENLLSQL-P--------- 69 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHT-TTCEEEEEECC---CT--------------------TCHHHHH-H---------
T ss_pred CcEEEecCCchhhhhHHHHHHHhcc-CceeEEEEEEccCCCc--------------------cHHHHHH-H---------
Confidence 5799999888889999999999887 6667888888643210 0000111 1
Q ss_pred HHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCC-----CEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEE
Q 026810 122 AADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSL-----SAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVV 196 (232)
Q Consensus 122 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~-----dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVl 196 (232)
.+.+.+++.++..-+.++...++.+++....+.++. +.|++|...... .+. -+..+..+ +++..+.|+
T Consensus 70 --~l~~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-~~~---~y~~~i~~-~~~~~~nVl 142 (294)
T 3g40_A 70 --SISEGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD-RDE---EIREIIRK-ASMYRMGVL 142 (294)
T ss_dssp --HHHHHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-GHH---HHHHHHHH-HHHTTCEEE
T ss_pred --HHHHHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-hhH---HHHHHHHH-HHHhCceEE
Confidence 123345556899999999988889999888887764 899999875442 222 23344443 445699999
Q ss_pred EEcCCCCC
Q 026810 197 VVRYPDDK 204 (232)
Q Consensus 197 iVp~~~~~ 204 (232)
+++.....
T Consensus 143 il~~~~~~ 150 (294)
T 3g40_A 143 LFSKHPQA 150 (294)
T ss_dssp EEECCTTT
T ss_pred EEecCCcc
Confidence 99764443
No 33
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=89.87 E-value=1.6 Score=32.34 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=45.8
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
..|+++++.+.--+..-+.+.+++++...+.||.+..+...+.+. +...+.+||+-||.
T Consensus 24 ~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgv-----------va~~t~~PVIgVP~ 82 (157)
T 2ywx_A 24 EFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGV-----------VASLTTKPVIAVPV 82 (157)
T ss_dssp HTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHH-----------HHTTCSSCEEEEEE
T ss_pred HcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHH-----------HHhccCCCEEEecC
Confidence 348999999988777788888998876668888888765444333 55677999999997
No 34
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=89.72 E-value=3.2 Score=33.29 Aligned_cols=32 Identities=25% Similarity=0.156 Sum_probs=25.9
Q ss_pred EecCChhHHHHHHHHHHHhCCCCC--EEEEEEEec
Q 026810 47 AVDLSDESAFAVRWAVHHYLRPGD--AVILVHVSP 79 (232)
Q Consensus 47 ~vD~s~~s~~al~~A~~la~~~~~--~l~ll~v~~ 79 (232)
+.-.++.+..|++.|.++... +. +++++.+-+
T Consensus 35 ~~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~ 68 (255)
T 1efv_B 35 KHSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGP 68 (255)
T ss_dssp CEEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEES
T ss_pred CccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCC
Confidence 444678999999999999876 66 899888874
No 35
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=89.62 E-value=2 Score=32.22 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=43.5
Q ss_pred hCCcceEEEEeeCCchHHHHHHHH---HhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEI---ERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a---~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.+|+++++.+.--+..-+.+.+++ ++.+++.||.+..+...+.+. +...+.+||+=||...
T Consensus 31 ~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~ 94 (169)
T 3trh_A 31 SLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGT-----------IAAHTLKPVIGVPMAG 94 (169)
T ss_dssp HTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHH-----------HHHTCSSCEEEEECCC
T ss_pred HcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH-----------HHhcCCCCEEEeecCC
Confidence 348999988888766555555554 457899888888765444332 5567899999999754
No 36
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=89.01 E-value=2.3 Score=31.98 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=44.4
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHH---hcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIE---RLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~---~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.+|+++++.+.--+..-+.+.++++ +.+++.||.+..+...+... +.-.+.+||+=||...
T Consensus 37 ~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~ 100 (174)
T 3kuu_A 37 TLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGM-----------LAAKTLVPVLGVPVQS 100 (174)
T ss_dssp HTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH-----------HHHTCSSCEEEEEECC
T ss_pred HcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHH-----------HHhccCCCEEEeeCCC
Confidence 3489999998887776666666665 46789888888765444332 5567899999999754
No 37
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=88.96 E-value=0.5 Score=36.45 Aligned_cols=115 Identities=5% Similarity=-0.111 Sum_probs=70.0
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
..++|++++.++-.+.++++..-.+.+ .|.+++++-.-. +.+.+....
T Consensus 7 ~~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T~~--------------------------A~~fi~~~~----- 54 (194)
T 1p3y_1 7 KDKKLLIGICGSISSVGISSYLLYFKS-FFKEIRVVMTKT--------------------------AEDLIPAHT----- 54 (194)
T ss_dssp GGCEEEEEECSCGGGGGTHHHHHHHTT-TSSEEEEEECHH--------------------------HHHHSCHHH-----
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEchh--------------------------HHHHHHHHH-----
Confidence 458999999999999999887777644 688877664321 111111100
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCc--hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEE
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHD--MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV 197 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~--~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVli 197 (232)
+..+ . +. + +.-...+ +...| +.+++ +|++|+..-..+.+.++..|+-.+....++...++||++
T Consensus 55 --~~~l----~--~~-v--~~~~~~~~~~~~hi-~l~~~--aD~~vIaPaTanTlAKiA~GiaDnLlt~~a~a~~~pvvl 120 (194)
T 1p3y_1 55 --VSYF----C--DH-V--YSEHGENGKRHSHV-EIGRW--ADIYCIIPATANILGQTANGVAMNLVATTVLAHPHNTIF 120 (194)
T ss_dssp --HGGG----S--SE-E--ECTTCSSSCCCCHH-HHHHH--CSEEEEEEECHHHHHHHHTTCCSSHHHHHHHHSSSCCEE
T ss_pred --HHHh----c--CC-E--eccccccCCCcCcc-ccccc--CCEEEEeCCCHHHHHHHHhhccCCHHHHHHHHcCCCEEE
Confidence 1011 1 11 1 1111110 11112 33445 999999988888888876666666666677778999999
Q ss_pred EcC
Q 026810 198 VRY 200 (232)
Q Consensus 198 Vp~ 200 (232)
+|.
T Consensus 121 ~Pa 123 (194)
T 1p3y_1 121 FPN 123 (194)
T ss_dssp EEC
T ss_pred EEC
Confidence 996
No 38
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=88.68 E-value=3.4 Score=30.82 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=44.7
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHh---cCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIER---LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~---~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
.+|++++..+.--+..-+.+.+++++ .+++.||.+..+...+.+. +.-.+.+||+-||....
T Consensus 30 ~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~~ 94 (166)
T 3oow_A 30 NLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGM-----------VAAKTTLPVLGVPVKSS 94 (166)
T ss_dssp HTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHH-----------HHHTCSSCEEEEECCCT
T ss_pred HcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHH-----------HHhccCCCEEEeecCcC
Confidence 34889998888877656667777654 5689999998765444333 56678999999997543
No 39
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=88.65 E-value=2.8 Score=31.44 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=44.8
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHH---hcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIE---RLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~---~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
.+|+++++.+.--+..-+.+.++++ +.+++.||.+..+...+... +.-.+.+||+-||....
T Consensus 36 ~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~~ 100 (170)
T 1xmp_A 36 ELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGM-----------VAAKTNLPVIGVPVQSK 100 (170)
T ss_dssp HTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------HHTTCCSCEEEEEECCT
T ss_pred HcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH-----------HHhccCCCEEEeeCCCC
Confidence 3489999998877666666777765 45689888888765444333 55677999999997553
No 40
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=88.56 E-value=9.2 Score=31.41 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=34.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCE-EEEEEEecC
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDA-VILVHVSPT 80 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~-l~ll~v~~~ 80 (232)
.++|+|++.|-.+|..++..+..+....+.+ +.++|+-..
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g 64 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHM 64 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECC
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECC
Confidence 4789999999999999998888877667778 999999643
No 41
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=88.48 E-value=3 Score=32.57 Aligned_cols=39 Identities=10% Similarity=-0.092 Sum_probs=32.4
Q ss_pred CcEEEEEecC-----ChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 41 RRKIGVAVDL-----SDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 41 ~~~ILv~vD~-----s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
++.|||-++- .+.+..++..|.+++...|.+++++-+-+
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~ 46 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGT 46 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEES
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence 4678888873 57799999999999998889998887764
No 42
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=88.18 E-value=0.46 Score=37.02 Aligned_cols=122 Identities=11% Similarity=-0.024 Sum_probs=67.0
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHH
Q 026810 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (232)
Q Consensus 39 ~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (232)
+..++|++++-++-.+.++++..-.+.+..|.+++++-.-...... .+.. .. ...+.+ ..
T Consensus 17 l~~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~T~~A~~fi----~~~~---~~-~~v~~d--~d---------- 76 (206)
T 1qzu_A 17 ERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFY----SPQD---IP-VTLYSD--AD---------- 76 (206)
T ss_dssp CSSEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEECTGGGGSS----CGGG---SC-SCEECH--HH----------
T ss_pred cCCCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEECHhHHHHh----CHHH---cC-ceEEec--Cc----------
Confidence 3568999999999999999887777654257777766533221110 0000 00 000000 00
Q ss_pred HHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc--CCCcEE
Q 026810 119 ATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH--CVCPVV 196 (232)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~--~~~PVl 196 (232)
....+. .+..+... ++.+++ +|++|+..-..+.+.++..|+-.+....++.. ..+||+
T Consensus 77 ------~~~~~~-----------~~~~~~~H-i~l~~~--aD~~vIaPaTanTlAKiA~GiaDnLlt~~~~alk~~~pvv 136 (206)
T 1qzu_A 77 ------EWEMWK-----------SRSDPVLH-IDLRRW--ADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPLL 136 (206)
T ss_dssp ------HHHTCS-----------STTSCCHH-HHHHTT--CSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCCTTSCCC
T ss_pred ------cccccc-----------CCCCccch-hhcccc--cCEEEEecCCHHHHHHHHccccCCHHHHHHHHhcCCCCEE
Confidence 000000 01111111 244444 99999998888888877555555555566665 689999
Q ss_pred EEcC
Q 026810 197 VVRY 200 (232)
Q Consensus 197 iVp~ 200 (232)
++|.
T Consensus 137 laPa 140 (206)
T 1qzu_A 137 FCPA 140 (206)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9994
No 43
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=87.98 E-value=1.3 Score=33.85 Aligned_cols=125 Identities=11% Similarity=0.072 Sum_probs=68.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATK 121 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (232)
++|++++-++..+.++++..-.+.+. |.+++++-.- .+.+.+..+....
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~T~--------------------------~A~~~i~~e~~~~---- 50 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVISR--------------------------NAKVVLKEEHSLT---- 50 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEECH--------------------------HHHHHHHHC--------
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEECh--------------------------hHHHHhhHHhCCC----
Confidence 79999999999999998888777654 7777666432 1122222111000
Q ss_pred HHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC---CCcEEEE
Q 026810 122 AADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC---VCPVVVV 198 (232)
Q Consensus 122 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~---~~PVliV 198 (232)
+..+...+ + .-.++. ..+ +..-|..-.....+|++|+..-..+.+.++..|+-.+.....+..+ .+||+++
T Consensus 51 ~~~l~~~l---~-~~~v~~-~~~-~~~hi~~~s~~~~aD~mvIaPaTanTlAkiA~GiaDnLlt~~a~~~lk~~~plvl~ 124 (189)
T 2ejb_A 51 FEEVLKGL---K-NVRIHE-END-FTSPLASGSRLVHYRGVYVVPCSTNTLSCIANGINKNLIHRVGEVALKERVPLVLL 124 (189)
T ss_dssp ---CCCCC---S-SEEEEE-TTC-TTSGGGCHHHHTTEEEEEEEEECHHHHHHHHHTCCSSHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHh---C-CCeEec-CCC-CcCCccccccccccCEEEEecCCHHHHHHHHcCcCCcHHHHHHHHHccCCCcEEEE
Confidence 00010001 1 111222 222 2322222111245999988888878777774444444444555545 8999999
Q ss_pred cCCCC
Q 026810 199 RYPDD 203 (232)
Q Consensus 199 p~~~~ 203 (232)
|..-+
T Consensus 125 Pa~m~ 129 (189)
T 2ejb_A 125 VREAP 129 (189)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 98443
No 44
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=87.82 E-value=2.2 Score=31.80 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=44.3
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHH---hcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIE---RLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~---~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
.+|++++..+.--+..-+.+.++++ +.+++.||.+..+...+.+. +.-.+.+||+-||....
T Consensus 28 ~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~~ 92 (163)
T 3ors_A 28 YFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGM-----------VASLTTLPVIGVPIETK 92 (163)
T ss_dssp HTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------HHHHCSSCEEEEEECCT
T ss_pred HcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHH-----------HHhccCCCEEEeeCCCC
Confidence 3489999988887766666666654 46789888888765444332 55568999999997543
No 45
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=87.50 E-value=2 Score=32.34 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=42.9
Q ss_pred hCCcceEEEEeeCCchHHHHHHH---HHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLE---IERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~---a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.+|+++++.+.--+..-+.+.++ +++.+++.||.+..+...+.+. +...+.+||+-||...
T Consensus 32 ~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~ 95 (174)
T 3lp6_A 32 EFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGM-----------VAAATPLPVIGVPVPL 95 (174)
T ss_dssp HTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHH-----------HHHHCSSCEEEEEECC
T ss_pred HcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHH-----------HHhccCCCEEEeeCCC
Confidence 34889998888876655555555 5567899988888765444332 5556899999999753
No 46
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=86.96 E-value=2.8 Score=31.79 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=43.4
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHH---hcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIE---RLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~---~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
..|+++++.+.--+..-+.+.++++ +.+++.||.+..+...+.+. +...+.+||+-||...
T Consensus 38 ~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~ 101 (183)
T 1o4v_A 38 EFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGM-----------VASITHLPVIGVPVKT 101 (183)
T ss_dssp HTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------HHHHCSSCEEEEEECC
T ss_pred HcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHH-----------HHhccCCCEEEeeCCC
Confidence 3489999988877665566666654 46789888888765444333 4556899999999755
No 47
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=86.92 E-value=6.9 Score=28.17 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=52.3
Q ss_pred hhhhCCcceE-EEEeeCCchHHHHHHHHHhcC--CCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEE
Q 026810 128 PLKEAGFPYK-IHIVKDHDMRERLCLEIERLS--LSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVV 198 (232)
Q Consensus 128 ~~~~~~~~v~-~~~~~g~~~~~~I~~~a~~~~--~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliV 198 (232)
.++..|..++ -.+...++ ..+|.....+.+ +|=||+-+.. ....+| |.-..+.+.=+ ...||+=+
T Consensus 66 aL~~~G~~a~~G~v~d~~P-l~AL~~~v~~~~~~~deiIV~T~P-h~vs~~---fh~DwasrAr~-~gvPVlhl 133 (138)
T 2iel_A 66 ALEAQGIPVEEAKAGDISP-LLAIEEELLAHPGAYQGIVLSTLP-PGLSRW---LRLDVHTQAER-FGLPVIHV 133 (138)
T ss_dssp HHHTTTCCCSEEEEEESSH-HHHHHHHHHHSTTSCSEEEEEECC-TTTCHH---HHTTHHHHGGG-GSSCEEEE
T ss_pred HHHHcCCcccccccCCCCh-HHHHHHHHHhcCCCCceEEEEcCC-chHHHH---HhccHHHHHHh-cCCCEEEE
Confidence 3445588888 88888764 999999999999 9999999885 446677 77788888766 89999865
No 48
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=86.76 E-value=3.3 Score=31.40 Aligned_cols=61 Identities=25% Similarity=0.289 Sum_probs=44.4
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHH---hcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIE---RLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~---~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.+|+++++.+.--+..-+.+.++++ +.+++.||.+..+-..+... +.-.+.+||+-||...
T Consensus 46 ~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~ 109 (182)
T 1u11_A 46 ELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGM-----------CAAWTRLPVLGVPVES 109 (182)
T ss_dssp HTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHH-----------HHHHCSSCEEEEEECC
T ss_pred HcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHH-----------HHhccCCCEEEeeCCC
Confidence 3489999999887766677777765 45689888888765444332 5556799999999755
No 49
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=86.44 E-value=1.4 Score=34.40 Aligned_cols=47 Identities=6% Similarity=0.017 Sum_probs=33.6
Q ss_pred HHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC--CCcEEEEcC
Q 026810 152 LEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC--VCPVVVVRY 200 (232)
Q Consensus 152 ~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~--~~PVliVp~ 200 (232)
+++++ +|++|+..-..+.+.++..|+-.+....+++.+ .+||+++|.
T Consensus 92 ~l~~~--aD~mvIaPaTanTlAKiA~GiaDnLlt~~~~A~d~~~pvvlaPa 140 (209)
T 1mvl_A 92 ELRRW--ADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPA 140 (209)
T ss_dssp HHHHH--CSEEEEEEECHHHHHHHHHTCCSSHHHHHHHTCCTTSCEEEEEC
T ss_pred hhccc--CCEEEEecCCHHHHHHHHccccCcHHHHHHHHhcCCCCEEEEEC
Confidence 44455 899999998888888874444445544455554 699999997
No 50
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=86.20 E-value=2.3 Score=31.58 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=43.1
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHH---hc-CCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIE---RL-SLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~---~~-~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.+|+++++.+.--+..-+.+.++++ +. +++.||.+..+...+.+. +.-.+.+||+-||...
T Consensus 27 ~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpgv-----------vA~~t~~PVIgVP~~~ 91 (159)
T 3rg8_A 27 TFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGF-----------VDGFVKGATIACPPPS 91 (159)
T ss_dssp HTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHH-----------HHHHSSSCEEECCCCC
T ss_pred HcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHH-----------HHhccCCCEEEeeCCC
Confidence 3489999888887766666666654 32 689999998765444332 5556899999999643
No 51
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=76.25 E-value=14 Score=32.22 Aligned_cols=116 Identities=13% Similarity=0.126 Sum_probs=68.3
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026810 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (232)
Q Consensus 49 D~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (232)
|.=-....||..|++.|...+.+|..|++.++.... ...... .++.+.+..+.+.
T Consensus 46 DLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~-----------------~~~~r~--------~Fl~~sL~~L~~~ 100 (482)
T 2xry_A 46 DQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE-----------------AGIRQY--------EFMLKGLQELEVS 100 (482)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG-----------------SCHHHH--------HHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhc-----------------cCHHHH--------HHHHHHHHHHHHH
Confidence 444455667888887776567789999998653210 011111 2223333444445
Q ss_pred hhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 129 ~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
+...|+++.+ ..|+ +.+.|.+.+++.+++.|+.-... .... -....++.....|++..+..
T Consensus 101 L~~~G~~L~v--~~g~-~~~~l~~l~~~~~~~~V~~~~~~-~~~~-------~~~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 101 LSRKKIPSFF--LRGD-PGEKISRFVKDYNAGTLVTDFSP-LRIK-------NQWIEKVISGISIPFFEVDA 161 (482)
T ss_dssp HHHTTCCEEE--EESC-HHHHHHHHHHHTTCSEEEEECCC-SHHH-------HHHHHHHHHHCCSCEEEECC
T ss_pred HHHcCCcEEE--EeCC-HHHHHHHHHHHcCCCEEEEeccc-chhH-------HHHHHHHHHHcCCEEEEEeC
Confidence 5555777655 4565 59999999999999999986432 2111 12333444444777777654
No 52
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=75.90 E-value=17 Score=28.16 Aligned_cols=144 Identities=13% Similarity=0.056 Sum_probs=74.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
..+||.|-+.++.....++-.++. ....+++| +-|+...... .. ++
T Consensus 7 ~~~ri~vl~SG~gsnl~all~~~~-~~~~~~~I--~~Vis~~~~a------------------~~-----l~-------- 52 (215)
T 3kcq_A 7 KELRVGVLISGRGSNLEALAKAFS-TEESSVVI--SCVISNNAEA------------------RG-----LL-------- 52 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHTC-CC-CSEEE--EEEEESCTTC------------------TH-----HH--------
T ss_pred CCCEEEEEEECCcHHHHHHHHHHH-cCCCCcEE--EEEEeCCcch------------------HH-----HH--------
Confidence 467899999999888777666553 11223444 4444332100 00 00
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCC-------------------cccccCCCcc
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG-------------------AEKRGSDGKL 180 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~-------------------~~~~~~~~~~ 180 (232)
.+.+.++++.......-. ...+.+..++.++|+||+...++- .+-++ +..
T Consensus 53 --------~A~~~gIp~~~~~~~~~~-~~~~~~~L~~~~~Dlivlagy~~IL~~~~l~~~~~~~iNiHpSLLP~y--rG~ 121 (215)
T 3kcq_A 53 --------IAQSYGIPTFVVKRKPLD-IEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSF--KGL 121 (215)
T ss_dssp --------HHHHTTCCEEECCBTTBC-HHHHHHHHHHTTCSEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTTT--CSS
T ss_pred --------HHHHcCCCEEEeCcccCC-hHHHHHHHHHhCCCEEEEeCCceEeCHHHHhhccCCeEEECcccccCC--CCc
Confidence 112237775543222212 367888889999999999876421 11221 001
Q ss_pred CchhHHHhcc---CCCcEEEEcCCCCCCCCCceEEecCCCCCC-CchHHhhhcc
Q 026810 181 GSVSDYCVHH---CVCPVVVVRYPDDKDDGEPLVKVKEPEKDD-EDDHVDRKLK 230 (232)
Q Consensus 181 gs~~~~vl~~---~~~PVliVp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 230 (232)
...-+.+... +.|.|+.|-. ..+.+.++.....+=+.+ -...|.+++.
T Consensus 122 ~pi~~Ai~~G~~~tGvTvh~v~~--~lD~G~Ii~Q~~v~I~~~dt~~~L~~rl~ 173 (215)
T 3kcq_A 122 NAQEQAYKAGVKIAGCTLHYVYQ--ELDAGPIIMQAAVPVLREDTAESLASRIL 173 (215)
T ss_dssp CHHHHHHHHTCSEEEEEEEECCS--STTCSCEEEEEEEECCTTCCHHHHHHHHH
T ss_pred cHHHHHHHcCCCeEEEEEEEEcC--CCCCCCEEEEEEeecCCCCCHHHHHHHHH
Confidence 1123334433 3466666653 456667766655544333 3334555543
No 53
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=75.63 E-value=7.6 Score=26.19 Aligned_cols=51 Identities=16% Similarity=-0.000 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCC-----CcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGF-----GAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~-----~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
..+.|.+++++++++.||+|-.-. +...+ ..-..++++-.. ++||..+...
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~----~~~~f~~~L~~~-~lpV~~~DER 94 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKESAQAG----KVLPLVEALRAR-GVEVELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSS----TTHHHHHHHHHT-TCEEEEECCS
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHH----HHHHHHHHHhcC-CCCEEEECCC
Confidence 478899999999999999995422 11111 223456666666 8999988753
No 54
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=74.79 E-value=20 Score=27.65 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=50.1
Q ss_pred CCCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHH
Q 026810 38 SLARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (232)
Q Consensus 38 ~~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (232)
.|+.++|.|-+.++.....++-.++. ....+++|.+| +...... .. ++
T Consensus 4 ~m~~~ri~vl~SG~gsnl~all~~~~-~~~l~~~I~~V--isn~~~a------------------~~-----l~------ 51 (209)
T 4ds3_A 4 SMKRNRVVIFISGGGSNMEALIRAAQ-APGFPAEIVAV--FSDKAEA------------------GG-----LA------ 51 (209)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHHT-STTCSEEEEEE--EESCTTC------------------TH-----HH------
T ss_pred cCCCccEEEEEECCcHHHHHHHHHHH-cCCCCcEEEEE--EECCccc------------------HH-----HH------
Confidence 34567899999999888877766664 22234455444 4322100 00 00
Q ss_pred HHHHHHHhhhhhhhCCcceEEEEeeC-Cc---hHHHHHHHHHhcCCCEEEEeeCC
Q 026810 118 TATKAADLARPLKEAGFPYKIHIVKD-HD---MRERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~v~~~~~~g-~~---~~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
.+...|+++....... .+ -...+++..++.++|+||+...+
T Consensus 52 ----------~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 52 ----------KAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp ----------HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred ----------HHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 1122377755432211 11 12578888899999999998764
No 55
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=73.27 E-value=16 Score=30.17 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=32.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
+.+++|++.+-.+|...+..+..+....+.++.++|+-..
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg 85 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTR 85 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCS
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECC
Confidence 4689999999999999999888877655567888888643
No 56
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=69.33 E-value=13 Score=32.44 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=32.5
Q ss_pred HHHHHHhhhhhhhCCcceEEEEe--eCCchHHHHHHHHHhcCCCEEEEee
Q 026810 119 ATKAADLARPLKEAGFPYKIHIV--KDHDMRERLCLEIERLSLSAVIMGS 166 (232)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~~~~~--~g~~~~~~I~~~a~~~~~dlIV~G~ 166 (232)
.+.+..+...+...|+++.+... .|+ +.+.|.+.+++.+++.|+.-.
T Consensus 55 ~~sL~~L~~~L~~~G~~L~v~~~~~~g~-~~~~l~~l~~~~~~~~v~~~~ 103 (471)
T 1dnp_A 55 NAQLNGLQIALAEKGIPLLFREVDDFVA-SVEIVKQVCAENSVTHLFYNY 103 (471)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSSHHH-HHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCeEEEEEccCCCC-HHHHHHHHHHHcCCCEEEEec
Confidence 33444455555556877766533 454 599999999999999988843
No 57
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=67.82 E-value=46 Score=29.55 Aligned_cols=100 Identities=9% Similarity=-0.015 Sum_probs=58.5
Q ss_pred cEEEEEe--cCChhHHHHHHHHHHHhCC--CCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHH
Q 026810 42 RKIGVAV--DLSDESAFAVRWAVHHYLR--PGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTF 117 (232)
Q Consensus 42 ~~ILv~v--D~s~~s~~al~~A~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (232)
..+|+=+ |.=-....||..|++.+.. .+..|..|++.++...... . ....... +
T Consensus 29 ~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~-----~---------~~~~r~~--------F 86 (543)
T 2wq7_A 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWM-----Q---------VGANRWR--------F 86 (543)
T ss_dssp EEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCT-----T---------SCHHHHH--------H
T ss_pred ceEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhccc-----C---------CCHHHHH--------H
Confidence 4445545 5445566778888876654 4667999999875321100 0 0111111 2
Q ss_pred HHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEee
Q 026810 118 TATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGS 166 (232)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~ 166 (232)
+.+.+..+...+...|+++.+. .|+ +.+.|.+.+++.+++.|+.-.
T Consensus 87 l~~sL~~L~~~L~~~G~~L~v~--~g~-~~~~l~~l~~~~~~~~v~~~~ 132 (543)
T 2wq7_A 87 LQQTLEDLDNQLRKLNSRLFVV--RGK-PAEVFPRIFKSWRVEMLTFET 132 (543)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEE--ESC-HHHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCeEEEE--eCC-HHHHHHHHHHHcCCCEEEEec
Confidence 2223333444445457666554 465 599999999999999888763
No 58
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=67.13 E-value=18 Score=31.96 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=56.4
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026810 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (232)
Q Consensus 49 D~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (232)
|.--....||.+|++.|...+..|..|+|.++..... . ...... .++.+.+..+...
T Consensus 47 DLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~--------~-------~~~~r~--------~FL~~sL~dL~~~ 103 (506)
T 3umv_A 47 DQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLL--------S-------ARRRQL--------GFLLRGLRRLAAD 103 (506)
T ss_dssp CCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGG--------G-------CCHHHH--------HHHHHHHHHHHHH
T ss_pred CcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhcc--------C-------CCHHHH--------HHHHHHHHHHHHH
Confidence 5555677788889888876778899999986531100 0 011111 2333334445555
Q ss_pred hhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEE
Q 026810 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIM 164 (232)
Q Consensus 129 ~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~ 164 (232)
+...|+++ .+..|++ .+. .+.+++.+++.|+.
T Consensus 104 L~~lG~~L--~v~~G~p-~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 104 AAARHLPF--FLFTGGP-AEI-PALVQRLGASTLVA 135 (506)
T ss_dssp HHHTTCCE--EEESSCT-THH-HHHHHHTTCSEEEE
T ss_pred HHHcCCce--EEEecCh-HHH-HHHHHhcCCCEEEe
Confidence 55556665 4456765 777 99999999999997
No 59
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=66.67 E-value=14 Score=31.98 Aligned_cols=63 Identities=10% Similarity=0.059 Sum_probs=40.6
Q ss_pred hhhhCCcceEEEEeeCCchHHHHHHH---HHhcCC-CEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 128 PLKEAGFPYKIHIVKDHDMRERLCLE---IERLSL-SAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 128 ~~~~~~~~v~~~~~~g~~~~~~I~~~---a~~~~~-dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+...|+++++.+.--+..-+.+.++ +++.++ +.||.|..+.+.+.+. +...+.+||+-||..
T Consensus 287 ~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgv-----------va~~t~~PVIgvP~~ 353 (425)
T 2h31_A 287 ACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPV-----------MSGNTAYPVISCPPL 353 (425)
T ss_dssp HHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHH-----------HHHHCSSCEEECCCC
T ss_pred HHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhH-----------HhccCCCCEEEeeCc
Confidence 34455888888887765544444444 445677 5777776654433332 555679999999974
No 60
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=65.85 E-value=9 Score=29.71 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=30.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v 77 (232)
..++|++++-++..+.++++..-.+.+ .|.+++++-.
T Consensus 3 ~~k~IllgvTGaiaa~k~~~ll~~L~~-~g~eV~vv~T 39 (209)
T 3zqu_A 3 GPERITLAMTGASGAQYGLRLLDCLVQ-EEREVHFLIS 39 (209)
T ss_dssp SCSEEEEEECSSSCHHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEC
Confidence 458999999999999999988777766 5888877654
No 61
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=64.27 E-value=52 Score=26.21 Aligned_cols=126 Identities=14% Similarity=0.065 Sum_probs=79.0
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe-cCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS-PTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
....=|++-+.......++..+++|+..|..| .-|.. ++...++.....++ .++....+.-++..
T Consensus 28 VtSANIACGfHAGDp~~M~~tv~lA~~~gV~I-GAHPgypDl~GFGRR~m~~s----------~~el~~~v~YQiGA--- 93 (255)
T 1v6t_A 28 ITSANVACGWHAGDPLVMRKTVRLAKENDVQV-GAHPGYPDLMGFGRRYMKLT----------PEEARNYILYQVGA--- 93 (255)
T ss_dssp CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEE-EEECCCSCTTTTTCSCCCCC----------HHHHHHHHHHHHHH---
T ss_pred hhhhhhhccccCCCHHHHHHHHHHHHHcCCeE-ecCCCCCcccCCCCCCCCCC----------HHHHHHHHHHHHHH---
Confidence 46677888888888889999999999888765 34543 33333333222222 22333332222211
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeC---------CchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH 190 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g---------~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~ 190 (232)
+...+...|.++.+.--+| ...++.|++.+...+.+|+++|.. ||...+..+.
T Consensus 94 -----L~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~-------------gs~~~~~A~~ 155 (255)
T 1v6t_A 94 -----LYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLS-------------NSRVADIAEE 155 (255)
T ss_dssp -----HHHHHHHTTCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEET-------------TCHHHHHHHH
T ss_pred -----HHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC-------------ChHHHHHHHH
Confidence 2222334477877776664 226889999999999999999954 4566666777
Q ss_pred CCCcEEEE
Q 026810 191 CVCPVVVV 198 (232)
Q Consensus 191 ~~~PVliV 198 (232)
..+|++-=
T Consensus 156 ~Gl~~~~E 163 (255)
T 1v6t_A 156 MGLKVAHE 163 (255)
T ss_dssp HTCCEEEE
T ss_pred cCCcEEEE
Confidence 77777654
No 62
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=62.87 E-value=61 Score=26.40 Aligned_cols=132 Identities=8% Similarity=-0.026 Sum_probs=73.4
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecC----------ChhHHHHHHHHHHHhCCCCCEEEEEEEecCC
Q 026810 12 HPHLPTIKIHNPSANTTTPAATPTPTSLARRKIGVAVDL----------SDESAFAVRWAVHHYLRPGDAVILVHVSPTS 81 (232)
Q Consensus 12 ~~~~pvl~v~~~~~~~~~~~~~~~~~~~~~~~ILv~vD~----------s~~s~~al~~A~~la~~~~~~l~ll~v~~~~ 81 (232)
.....|++.+..+.. .-..+++|=|=+.+ ..+..-++-.|-.+....+++|.++.|++.
T Consensus 136 ~~~~nVlil~~~~~~----------~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d- 204 (294)
T 3g40_A 136 MYRMGVLLFSKHPQA----------GLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT- 204 (294)
T ss_dssp HTTCEEEEEECCTTT----------TTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS-
T ss_pred HhCceEEEEecCCcc----------CCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC-
Confidence 346677777743221 11245777776333 223333444444444456999999999863
Q ss_pred ccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCE
Q 026810 82 VLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSA 161 (232)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dl 161 (232)
++.++..++.+++. .+.. -++.+..++. .+ ...|+..+ .++||
T Consensus 205 ----------------------e~a~~~a~~~l~~L----v~~~-------Ri~a~~~vv~-~~-F~~il~~s--~~ADL 247 (294)
T 3g40_A 205 ----------------------AIQAQAAENFLQSL----AELA-------RIPNVKMQVL-RE-NPIKSSKL--PFASL 247 (294)
T ss_dssp ----------------------HHHHHHHHHHHHHH----HHHH-------TCCSCEEEEE-SS-CTTTSSSC--CCCSE
T ss_pred ----------------------HHHHHHHHHHHHHH----HHHh-------cCCceEEEec-Cc-hHHHHhhC--cCCCE
Confidence 22233333322222 2221 2233333333 44 66666665 66999
Q ss_pred EEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 162 VIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 162 IV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
+++|-...-.+ ....+....+...++.|..
T Consensus 248 ~flGl~~~~df---------~~~~~~~~~~~ssc~f~~d 277 (294)
T 3g40_A 248 HIFSLDPNPDL---------DLARHLMEKAGSSCIFALD 277 (294)
T ss_dssp EEEECCSSCCH---------HHHHHHHHHHTSEEEEEEC
T ss_pred EEEcCCCCCcH---------HHHHHHHHhcCCeEEEEec
Confidence 99998653322 4667788888888888875
No 63
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=60.82 E-value=18 Score=29.81 Aligned_cols=66 Identities=12% Similarity=-0.002 Sum_probs=39.5
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHh-ccCCCcEEEEcCCCCCCC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV-HHCVCPVVVVRYPDDKDD 206 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl-~~~~~PVliVp~~~~~~~ 206 (232)
.++.+.........-+..+...+...++|+||+.. |-|++. .++..+. ....+|+.++|-+..+..
T Consensus 54 ~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~G-GDGTv~--------~v~~~l~~~~~~~pl~iIP~GT~N~l 120 (337)
T 2qv7_A 54 AGYETSAYATEKIGDATLEAERAMHENYDVLIAAG-GDGTLN--------EVVNGIAEKPNRPKLGVIPMGTVNDF 120 (337)
T ss_dssp TTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEE-CHHHHH--------HHHHHHTTCSSCCEEEEEECSSCCHH
T ss_pred cCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEc-CchHHH--------HHHHHHHhCCCCCcEEEecCCcHhHH
Confidence 36666666655432355566666566788877653 334332 3444443 246799999998776644
No 64
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=59.76 E-value=83 Score=27.72 Aligned_cols=131 Identities=12% Similarity=0.015 Sum_probs=70.0
Q ss_pred cEEEEEe--cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCC-CCCCccccCcchhhhHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAV--DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADW-GPLPQQQINSENASNIEHQKQLEDDFDTFT 118 (232)
Q Consensus 42 ~~ILv~v--D~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (232)
+.+|+=+ |.=-....||..|++. +..|..|++.++.......+ ..... ......-+.
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~~~---------~~~r~~Fl~------- 99 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTHFFNFPKT---------GALRGGFLM------- 99 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCTTTCCBSS---------CHHHHHHHH-------
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccccccCCCC---------CHHHHHHHH-------
Confidence 4455544 4445566677777663 45788999987542211000 00000 111112222
Q ss_pred HHHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCC--CcEE
Q 026810 119 ATKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCV--CPVV 196 (232)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~--~PVl 196 (232)
+.+..+...+...|+++.+. .|+ +.+.|.+.+++.+++.|+.-.. ....... . -....+.+.... |+|.
T Consensus 100 -~sL~~L~~~L~~~G~~L~v~--~g~-~~~~l~~l~~~~~~~~V~~~~~-~~p~~~~---r-d~~v~~~l~~~gv~i~~~ 170 (525)
T 2j4d_A 100 -ECLVDLRKNLMKRGLNLLIR--SGK-PEEILPSLAKDFGARTVFAHKE-TCSEEVD---V-ERLVNQGLKRVGNSTKLE 170 (525)
T ss_dssp -HHHHHHHHHHHHTTCCCEEE--ESC-HHHHHHHHHHHHTCSEEEEECC-CSHHHHH---H-HHHHHHHHHTTCSSCEEE
T ss_pred -HHHHHHHHHHHHcCCeEEEE--eCC-HHHHHHHHHHHcCCCEEEEecc-CCHHHHH---H-HHHHHHHHHhcCCceEEE
Confidence 23333444445457766554 465 5999999999999999988643 2322222 1 123334455555 7887
Q ss_pred EEcCC
Q 026810 197 VVRYP 201 (232)
Q Consensus 197 iVp~~ 201 (232)
.+...
T Consensus 171 ~~~~~ 175 (525)
T 2j4d_A 171 LIWGS 175 (525)
T ss_dssp EECCS
T ss_pred EecCC
Confidence 77654
No 65
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=59.58 E-value=54 Score=26.04 Aligned_cols=126 Identities=15% Similarity=0.088 Sum_probs=75.0
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe-cCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS-PTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (232)
...=|++-+.......++..+++|+..|..| .-|.. ++...++.....++ .++....+.-++..
T Consensus 24 tSANIACGfHAGDp~~M~~Tv~lA~~~gV~I-GAHPgypDl~GFGRR~m~~s----------~~el~~~v~YQiGA---- 88 (252)
T 1xw8_A 24 SSANIACGFHAGDAQIMQACVREAIKNGVAI-GAHPSFPDRENFGRSAMQLP----------PETVYAQTLYQIGA---- 88 (252)
T ss_dssp SEEEEECSSSSCCHHHHHHHHHHHHHHTCEE-EEECCCC-------CCCCCC----------HHHHHHHHHHHHHH----
T ss_pred hhHHHhhcccCCCHHHHHHHHHHHHHcCCee-ecCCCCCcccCCCCCCCCCC----------HHHHHHHHHHHHHH----
Confidence 4455777777778888888999999887654 34443 32222333222222 22333322222211
Q ss_pred HHHHhhhhhhhCCcceEEEEeeC---------CchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC
Q 026810 121 KAADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC 191 (232)
Q Consensus 121 ~~~~~~~~~~~~~~~v~~~~~~g---------~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~ 191 (232)
+...+...|.++...--.| ...+++|++.+...+.+|+++|.. ||...+..+..
T Consensus 89 ----L~a~a~~~G~~l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~-------------gs~~~~~A~~~ 151 (252)
T 1xw8_A 89 ----LATIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLA-------------GSELIRAGKQY 151 (252)
T ss_dssp ----HHHHHHHTTCCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEET-------------TSHHHHHHHHT
T ss_pred ----HHHHHHHcCCEeEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC-------------ChHHHHHHHHc
Confidence 2222334477877776654 226889999999999999999954 46667777778
Q ss_pred CCcEEEEc
Q 026810 192 VCPVVVVR 199 (232)
Q Consensus 192 ~~PVliVp 199 (232)
.+|++.=-
T Consensus 152 Gl~~~~E~ 159 (252)
T 1xw8_A 152 GLTTREEV 159 (252)
T ss_dssp TCCEEEEE
T ss_pred CCcEEEEE
Confidence 88887643
No 66
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=59.20 E-value=84 Score=26.83 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=30.1
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
+.++|+|++.+-.+|..++.++.+. +.+|+.+|+...
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g 40 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIG 40 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESS
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECC
Confidence 3579999999999999998888763 678999998743
No 67
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=59.07 E-value=18 Score=31.70 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=43.4
Q ss_pred HhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 124 DLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 124 ~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+...+...|+++.+. .|+ +.+.|.+.+++.+++.|+.-.. ......- .-....+.+....++|..+...
T Consensus 61 ~L~~~L~~~G~~L~v~--~g~-~~~~l~~l~~~~~~~~v~~~~~-~~p~~~~----rd~~v~~~l~~~gi~~~~~~~~ 130 (484)
T 1owl_A 61 ELQQRYQQAGSRLLLL--QGD-PQHLIPQLAQQLQAEAVYWNQD-IEPYGRD----RDGQVAAALKTAGIRAVQLWDQ 130 (484)
T ss_dssp HHHHHHHHHTSCEEEE--ESC-HHHHHHHHHHHTTCSEEEEECC-CSHHHHH----HHHHHHHHHHHTTCEEEEECCS
T ss_pred HHHHHHHHCCCeEEEE--eCC-HHHHHHHHHHHcCCCEEEEecc-CChhHHH----HHHHHHHHHHHcCcEEEEecCC
Confidence 3444444447766554 565 5999999999999999888643 2322221 1223344555568888888753
No 68
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=57.09 E-value=27 Score=28.74 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=38.5
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhc---cCCCcEEEEcCCCCCC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH---HCVCPVVVVRYPDDKD 205 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~---~~~~PVliVp~~~~~~ 205 (232)
.++.+.+.......-+..+...+...++|+||+... -|++ ..++..+.. ...+|+.++|-+..++
T Consensus 56 ~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GG-DGTl--------~~v~~~l~~~~~~~~~plgiiP~Gt~N~ 123 (332)
T 2bon_A 56 EGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGG-DGTI--------NEVSTALIQCEGDDIPALGILPLGTAND 123 (332)
T ss_dssp TTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEES-HHHH--------HHHHHHHHHCCSSCCCEEEEEECSSSCH
T ss_pred cCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEcc-chHH--------HHHHHHHhhcccCCCCeEEEecCcCHHH
Confidence 377777766553222445555555557887766532 3333 335555553 4678999999876653
No 69
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=56.24 E-value=1e+02 Score=26.92 Aligned_cols=119 Identities=16% Similarity=0.068 Sum_probs=66.8
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026810 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (232)
Q Consensus 49 D~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (232)
|.=-....||..|++. + .+..|+|.++....... .. .. + ..++.+.+..+...
T Consensus 21 DLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~~~----~~---------~~--~-------~~fl~~sL~~L~~~ 73 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGHYH----PG---------RV--S-------RWWLKNSLAQLDSS 73 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTTCC----CC---------HH--H-------HHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHhC----C-CEEEEEEECchhcccCC----cc---------hH--H-------HHHHHHHHHHHHHH
Confidence 5445566778888774 2 57788888653211000 00 00 0 01333444445555
Q ss_pred hhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 129 LKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 129 ~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
+...|+++.+ ..++++.+.|.+.+++.+++.|+.-.. ....... .-....+.+....++|..+...
T Consensus 74 L~~~G~~L~v--~~~g~~~~~l~~l~~~~~~~~V~~~~~-~~p~~~~----rd~~v~~~l~~~gi~~~~~~~~ 139 (509)
T 1u3d_A 74 LRSLGTCLIT--KRSTDSVASLLDVVKSTGASQIFFNHL-YDPLSLV----RDHRAKDVLTAQGIAVRSFNAD 139 (509)
T ss_dssp HHHTTCCEEE--EECSCHHHHHHHHHHHHTCCEEEEECC-CSHHHHH----HHHHHHHHHHTTTCEEEEECCS
T ss_pred HHHCCCeEEE--EeCCCHHHHHHHHHHHcCCCEEEEecc-cCHHHHH----HHHHHHHHHHHcCcEEEEECCC
Confidence 5555777544 444456999999999999999988643 2222211 1123344556667888877653
No 70
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=55.75 E-value=35 Score=30.31 Aligned_cols=92 Identities=14% Similarity=0.023 Sum_probs=54.3
Q ss_pred cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026810 49 DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARP 128 (232)
Q Consensus 49 D~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (232)
|.--....||..|++.+. .+..|..|+|.++....... . .. ....++.+.+..+...
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~---~-----------~~--------~r~~Fl~~sL~~L~~~ 69 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QGIALIPVFIFDGESAGTKN---V-----------GY--------NRMRFLLDSLQDIDDQ 69 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTT---C-----------CH--------HHHHHHHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhccCC---C-----------CH--------HHHHHHHHHHHHHHHH
Confidence 333445566777766554 45589999998753211000 0 11 1112334445555556
Q ss_pred hhhC---CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEee
Q 026810 129 LKEA---GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGS 166 (232)
Q Consensus 129 ~~~~---~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~ 166 (232)
+... |+++.+ ..|+ +.+.|.+.+++.+++.|+.-.
T Consensus 70 L~~~~~~G~~L~v--~~G~-~~~vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 70 LQAATDGRGRLLV--FEGE-PAYIFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp GGGSCSSSSCCEE--EESC-HHHHHHHHHHHHCEEEECEEC
T ss_pred HHHhhcCCCeEEE--EeCC-HHHHHHHHHHHcCCCEEEEcc
Confidence 6655 666544 4565 589999999999999988643
No 71
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=55.64 E-value=1e+02 Score=26.74 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=54.4
Q ss_pred cEEEEEe--cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAV--DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 42 ~~ILv~v--D~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
+.+|+=+ |.=-....||..|++ .+..+..|++.++............. ...... ++.
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~---------~~~r~~--------Fl~ 64 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAKT---------GPWRSN--------FLQ 64 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBSS---------CHHHHH--------HHH
T ss_pred CcEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEECchhhcccccccCCC---------CHHHHH--------HHH
Confidence 3444444 444455667777765 34578889988753221100000000 111112 222
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEee
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGS 166 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~ 166 (232)
+.+..+...+...|+++.+ ..|+ +.+.|.+.+++.+++.|+.-.
T Consensus 65 ~sL~~L~~~L~~~G~~L~v--~~g~-~~~~l~~l~~~~~~~~V~~~~ 108 (489)
T 1np7_A 65 QSVQNLAESLQKVGNKLLV--TTGL-PEQVIPQIAKQINAKTIYYHR 108 (489)
T ss_dssp HHHHHHHHHHHHTTCCEEE--EESC-HHHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCcEEE--EECC-HHHHHHHHHHHcCCCEEEEec
Confidence 2333344444545766555 4465 589999999999998888763
No 72
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=55.45 E-value=69 Score=24.65 Aligned_cols=36 Identities=14% Similarity=0.007 Sum_probs=24.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v 77 (232)
++||.|-+.++-....++-.+.+ .....++|.+|-.
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~-~~~l~~eI~~Vis 37 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQK-AGQLPCEVALLIT 37 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHH-TTCCSSEEEEEEE
T ss_pred CCEEEEEEeCCchHHHHHHHHHH-cCCCCcEEEEEEE
Confidence 36888889998888888777765 3335567666544
No 73
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=55.31 E-value=50 Score=26.23 Aligned_cols=127 Identities=19% Similarity=0.130 Sum_probs=78.6
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe-cCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS-PTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
....=|++-+.......++..+++|+..|..| .-|.. ++...++.....++ .++....+.-++..
T Consensus 28 VtSANIACGfHAGDp~~M~~tv~lA~~~gV~I-GAHPgypDl~GFGRR~m~~s----------~~el~~~v~YQiGA--- 93 (250)
T 2dfa_A 28 VSSANLACGFHGGSPGRILEAVRLAKAHGVAV-GAHPGFPDLVGFGRREMALS----------PEEVYADVLYQIGA--- 93 (250)
T ss_dssp CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEE-EEECCCSCTTTTTCSCCCCC----------HHHHHHHHHHHHHH---
T ss_pred hhhhhhhccccCCCHHHHHHHHHHHHHcCCeE-ecCCCCCcccCCCCCCCCCC----------HHHHHHHHHHHHHH---
Confidence 46677888888888889999999999888765 34543 33333333222222 22333332222211
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeC---------CchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH 190 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g---------~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~ 190 (232)
+...+...|.++.+.--+| ...++.|++.+...+.+|+++|.. ||...+..+.
T Consensus 94 -----L~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~-------------gs~~~~~A~~ 155 (250)
T 2dfa_A 94 -----LSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLP-------------GTVYEEEARK 155 (250)
T ss_dssp -----HHHHHHHTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECT-------------TSHHHHHHHH
T ss_pred -----HHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC-------------ChHHHHHHHH
Confidence 2222233366666655553 226889999999999999999943 4666777778
Q ss_pred CCCcEEEEc
Q 026810 191 CVCPVVVVR 199 (232)
Q Consensus 191 ~~~PVliVp 199 (232)
..+|++-=-
T Consensus 156 ~Gl~~~~E~ 164 (250)
T 2dfa_A 156 AGLRVVLEA 164 (250)
T ss_dssp TTCCEEEEE
T ss_pred cCCcEEEEE
Confidence 888887543
No 74
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=54.99 E-value=50 Score=28.19 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=41.8
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEc
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp 199 (232)
+.+..+.+.+...|+++.+ ..|+ +.+.|.+.+++.+++.|+.-.. ......- ..++|-..+++++..+.
T Consensus 52 ~sL~~l~~~L~~~g~~l~~--~~g~-~~~~l~~l~~~~~~~~v~~~~~-~~~~~~~-------rd~~v~~~l~i~~~~~~ 120 (420)
T 2j07_A 52 ENVRALREAYRARGGALWV--LEGL-PWEKVPEAARRLKAKAVYALTS-HTPYGRY-------RDGRVREALPVPLHLLP 120 (420)
T ss_dssp HHHHHHHHHHHHTTCCEEE--EESC-HHHHHHHHHHHTTCSEEEEECC-CSHHHHH-------HHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHCCCeEEE--EeCC-HHHHHHHHHHHcCCCEEEEecc-cChhHHH-------HHHHHHHHcCCeEEEeC
Confidence 3344455555555776655 4565 5999999999999999988543 2222111 22233332377777766
Q ss_pred C
Q 026810 200 Y 200 (232)
Q Consensus 200 ~ 200 (232)
.
T Consensus 121 ~ 121 (420)
T 2j07_A 121 A 121 (420)
T ss_dssp C
T ss_pred C
Confidence 4
No 75
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=54.20 E-value=67 Score=24.76 Aligned_cols=141 Identities=16% Similarity=0.061 Sum_probs=73.9
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
++.||.|-+.++.....++-.+.. ...+++|.++ +..+.. . .++
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~V--is~~~a-------------------~-----~~~-------- 54 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAV--GDYPARVVAV--GVDREC-------------------R-----AAE-------- 54 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSS--TTCSEEEEEE--EESSCC-------------------H-----HHH--------
T ss_pred CCcEEEEEEeCChHHHHHHHHHHh--ccCCCeEEEE--EeCCch-------------------H-----HHH--------
Confidence 457899999999888777665553 2344566544 433211 0 000
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCC--c--hHHHHHHHHHhcCCCEEEEeeCCC-------------------CcccccC
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDH--D--MRERLCLEIERLSLSAVIMGSRGF-------------------GAEKRGS 176 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~--~--~~~~I~~~a~~~~~dlIV~G~~~~-------------------~~~~~~~ 176 (232)
.+.+.|+++........ . -...+.+..++.++|+||+...++ +.+-++
T Consensus 55 --------~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~~iL~~~~l~~~~~~~iNiHpSLLP~y- 125 (215)
T 3da8_A 55 --------IAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAF- 125 (215)
T ss_dssp --------HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECCSCCCHHHHHHHTTTEEEEESSCTTSS-
T ss_pred --------HHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCchhhCCHHHHhhccCCeEEeCcccccCC-
Confidence 11223776544421110 0 134677888889999999987642 112221
Q ss_pred CCccCc--hhHHHhcc---CCCcEEEEcCCCCCCCCCceEEecCCCCCC-CchHHhhhcc
Q 026810 177 DGKLGS--VSDYCVHH---CVCPVVVVRYPDDKDDGEPLVKVKEPEKDD-EDDHVDRKLK 230 (232)
Q Consensus 177 ~~~~gs--~~~~vl~~---~~~PVliVp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 230 (232)
-|. .-+.+... +.|.|+.|-. ..+.+.++.....+=+.+ -...|.+++.
T Consensus 126 ---rG~~pi~~Ai~~G~~~tGvTvh~v~~--~lD~G~Ii~Q~~v~I~~~dt~~~L~~rl~ 180 (215)
T 3da8_A 126 ---PGTHGVADALAYGVKVTGATVHLVDA--GTDTGPILAQQPVPVLDGDDEETLHERIK 180 (215)
T ss_dssp ---CSTTHHHHHHHHTCSEEEEEEEECCS--SSSCSCEEEEEEEECCTTCCHHHHHHHHH
T ss_pred ---CCchHHHHHHHcCCCeEEEEEEEEcC--CCCCCCEEEEEEeecCCCCCHHHHHHHHH
Confidence 222 22333332 3466666653 456677766655544333 3334555543
No 76
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=53.55 E-value=68 Score=24.02 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=28.6
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
..++|+|++.+-.+|..++..+.+. +.++..+|+..
T Consensus 2 ~~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~ 37 (219)
T 3bl5_A 2 KKEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHY 37 (219)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEES
T ss_pred CCCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeC
Confidence 3478999999999999888877664 36788888874
No 77
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=52.54 E-value=30 Score=28.03 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=40.2
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhc-cCCCcEEEEcCCCCCCC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH-HCVCPVVVVRYPDDKDD 206 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~-~~~~PVliVp~~~~~~~ 206 (232)
++.+++.......-+..+.+.+.+ ++|+||+.. |-+.+.+ +...+.. ...+|+.++|-+..++.
T Consensus 39 ~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~G-GDGTl~~--------v~~~l~~~~~~~~l~iiP~Gt~N~~ 103 (304)
T 3s40_A 39 FPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFG-GDGTVFE--------CTNGLAPLEIRPTLAIIPGGTCNDF 103 (304)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEE-CHHHHHH--------HHHHHTTCSSCCEEEEEECSSCCHH
T ss_pred CCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEc-cchHHHH--------HHHHHhhCCCCCcEEEecCCcHHHH
Confidence 677777776654446667666654 788877653 3343333 3333433 26799999998776644
No 78
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=52.31 E-value=9.4 Score=27.48 Aligned_cols=57 Identities=9% Similarity=-0.037 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCC--Cccc--ccCCCccCchhHHHhccCCCcEEEEcCCCCCC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGF--GAEK--RGSDGKLGSVSDYCVHHCVCPVVVVRYPDDKD 205 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~--~~~~--~~~~~~~gs~~~~vl~~~~~PVliVp~~~~~~ 205 (232)
....|.+.+++++++.||+|-.-. +... .. ..-..++++-...++||..+.......
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~---~~~~f~~~L~~~~~lpV~~~DERlTT~ 101 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTA---RARKFANRIHGRFGVEVKLHDERLSTV 101 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHH---HHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHH---HHHHHHHHHHHHhCCCEEEEcCCcCHH
Confidence 478999999999999999995421 1111 00 112345555555689999998744443
No 79
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=50.54 E-value=26 Score=30.15 Aligned_cols=40 Identities=28% Similarity=0.252 Sum_probs=34.8
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCC-CCCEEEEEEEecC
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLR-PGDAVILVHVSPT 80 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~-~~~~l~ll~v~~~ 80 (232)
.++|+|++.|-.+|..++..+..+... .+.++.++||-..
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhg 53 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHG 53 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCS
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECC
Confidence 478999999999999999988888776 7889999999743
No 80
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=50.11 E-value=85 Score=24.16 Aligned_cols=143 Identities=12% Similarity=0.059 Sum_probs=74.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHH
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (232)
..||.|-+.++.....++-.+.+-- .+.+|.+|-...... . . ++
T Consensus 5 ~~riavl~SG~Gsnl~all~~~~~~--~~~eI~~Vis~~~~a--------------------~----~-~~--------- 48 (215)
T 3tqr_A 5 PLPIVVLISGNGTNLQAIIGAIQKG--LAIEIRAVISNRADA--------------------Y----G-LK--------- 48 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHTT--CSEEEEEEEESCTTC--------------------H----H-HH---------
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHcC--CCCEEEEEEeCCcch--------------------H----H-HH---------
Confidence 4689999999988888877666522 455555444322110 0 0 00
Q ss_pred HHHHhhhhhhhCCcceEEEEeeC--Cc--hHHHHHHHHHhcCCCEEEEeeCCCC-------------------cccccCC
Q 026810 121 KAADLARPLKEAGFPYKIHIVKD--HD--MRERLCLEIERLSLSAVIMGSRGFG-------------------AEKRGSD 177 (232)
Q Consensus 121 ~~~~~~~~~~~~~~~v~~~~~~g--~~--~~~~I~~~a~~~~~dlIV~G~~~~~-------------------~~~~~~~ 177 (232)
.....|+++....... .. -...+++..++.++|+||+...++- .+-++
T Consensus 49 -------~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~y-- 119 (215)
T 3tqr_A 49 -------RAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFMRKLGKAFVSHYSGRMINIHPSLLPKY-- 119 (215)
T ss_dssp -------HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSSTTTT--
T ss_pred -------HHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccchhhCCHHHHhhccCCeEEeCcccCCCC--
Confidence 1122377754432211 11 1356888889999999999875421 11221
Q ss_pred CccCchhHHHhcc---CCCcEEEEcCCCCCCCCCceEEecCCCCCCC-chHHhhhcc
Q 026810 178 GKLGSVSDYCVHH---CVCPVVVVRYPDDKDDGEPLVKVKEPEKDDE-DDHVDRKLK 230 (232)
Q Consensus 178 ~~~gs~~~~vl~~---~~~PVliVp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 230 (232)
+.....-+.+... +.|.|+.|-. ..+.+.++.....+=+.++ ...|.+++.
T Consensus 120 rG~~pi~~Ai~~G~~~tGvTvh~v~~--~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~ 174 (215)
T 3tqr_A 120 TGLNTHERALAAGETEHGVSVHYVTE--DLDAGPLICQARLSITPQDTPETLKTRVH 174 (215)
T ss_dssp CSSCHHHHHHHTTCSEEEEEEEECC---CTTCSCEEEEEEEECCTTCCHHHHHHHHH
T ss_pred CChhHHHHHHHcCCCeEEEEEEEEcC--CCCCCCEEEEEEEecCCCCCHHHHHHHHH
Confidence 0111223334432 3466666653 4566777766655444333 344555543
No 81
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=49.74 E-value=64 Score=25.61 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=79.2
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe-cCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS-PTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
....=|++-+.......++..+++|+..|..| .-|.. ++...++.....++ .++....+.-++..
T Consensus 34 VtSANIACGfHAGDp~~M~~Tv~lA~~~gV~I-GAHPgypDl~GFGRR~m~~s----------~~el~~~v~YQiGA--- 99 (252)
T 2x5e_A 34 VDQANLACGFHAGDPLTMRRAVELAVRHGVSI-GAHPAYPDLSGFGRRSLACS----------AEEVHAMVLYQIGA--- 99 (252)
T ss_dssp CSEEEEECSSSSCCHHHHHHHHHHHHHTTCEE-EEECCCSCTTTTTCSCCCCC----------HHHHHHHHHHHHHH---
T ss_pred hhhhhhhccccCCCHHHHHHHHHHHHHcCCee-ecCCCCCcccCCCCCCCCCC----------HHHHHHHHHHHHHH---
Confidence 35667888888888889999999999888765 34543 33333333222222 22333332222211
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeC---------CchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKD---------HDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH 190 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g---------~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~ 190 (232)
+...+...|.++.+.--+| ...+++|++.+...+.+|+++|.. + --||...++.+.
T Consensus 100 -----L~a~a~~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~----~------~~gs~~~~~A~~ 164 (252)
T 2x5e_A 100 -----LDAFCRSLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLA----L------ADNGRELELADE 164 (252)
T ss_dssp -----HHHHHHHTTCCCCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEEC----C------SCCHHHHHHHHH
T ss_pred -----HHHHHHHcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeC----C------CCCCHHHHHHHH
Confidence 2222333477777766554 226889999999999999999954 0 125666777777
Q ss_pred CCCcEEEE
Q 026810 191 CVCPVVVV 198 (232)
Q Consensus 191 ~~~PVliV 198 (232)
..+|++.=
T Consensus 165 ~Gl~~~~E 172 (252)
T 2x5e_A 165 ADVPLLFE 172 (252)
T ss_dssp HTCCEEEE
T ss_pred cCCcEEEE
Confidence 77887653
No 82
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=49.73 E-value=49 Score=23.82 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=23.2
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG 170 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~ 170 (232)
++.++..-....+ ...+.....+ +|.||+|+.-.+
T Consensus 29 g~~v~~~~~~~~~-~~~~~~~~~~--~d~ii~Gspty~ 63 (161)
T 3hly_A 29 GVAVEMVDLRAVD-PQELIEAVSS--ARGIVLGTPPSQ 63 (161)
T ss_dssp TCCEEEEETTTCC-HHHHHHHHHH--CSEEEEECCBSS
T ss_pred CCeEEEEECCCCC-HHHHHHHHHh--CCEEEEEcCCcC
Confidence 6676666555544 4555554545 999999997654
No 83
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=48.95 E-value=54 Score=21.52 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
.+..++..++..+|+|++...-.+ ..++ ....++-...++||+++-.
T Consensus 35 ~~~al~~~~~~~~dlii~D~~~p~-~~g~------~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 35 GNEAVEMVEELQPDLILLDIMLPN-KDGV------EVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSTT-THHH------HHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHHHhhCCCCEEEEeCCCCC-CCHH------HHHHHHHhcCCCCEEEEEC
Confidence 444556677889999999876322 2222 2444444455789888754
No 84
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=48.03 E-value=35 Score=30.37 Aligned_cols=105 Identities=13% Similarity=0.086 Sum_probs=54.8
Q ss_pred cEEEEEe--cCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 42 RKIGVAV--DLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 42 ~~ILv~v--D~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
+.+|+=+ |.--....||..|++ .+..|..|+|.++.......... ..+... ....... ++.
T Consensus 5 ~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~-~~g~~~----~g~~r~~--------Fl~ 67 (537)
T 3fy4_A 5 SGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAF-SPGSSR----AGVNRIR--------FLL 67 (537)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSS-SSBCSS----CBHHHHH--------HHH
T ss_pred CcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhccccccc-cccccc----CCHHHHH--------HHH
Confidence 4444444 444455667776664 45689999998653211000000 000000 0111112 233
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEee
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGS 166 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~ 166 (232)
+.+..+...+...|.++.+. .|+ +.+.|.+.+++.+++.|+.-.
T Consensus 68 ~sL~~L~~~L~~~G~~L~v~--~G~-~~~vl~~L~~~~~~~~V~~n~ 111 (537)
T 3fy4_A 68 ESLKDLDSSLKKLGSRLLVF--KGE-PGEVLVRCLQEWKVKRLCFEY 111 (537)
T ss_dssp HHHHHHHHHHHHTTCCCEEE--ESC-HHHHHHHHHTTSCEEEEEECC
T ss_pred HHHHHHHHHHHHcCCceEEE--ECC-HHHHHHHHHHHcCCCEEEEec
Confidence 33344444455556665544 465 589999999999999988764
No 85
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=47.30 E-value=41 Score=24.28 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=22.7
Q ss_pred CcceEEEEeeCC-chHHHHHHHHHhcCCCEEEEeeCCCC
Q 026810 133 GFPYKIHIVKDH-DMRERLCLEIERLSLSAVIMGSRGFG 170 (232)
Q Consensus 133 ~~~v~~~~~~g~-~~~~~I~~~a~~~~~dlIV~G~~~~~ 170 (232)
|+.++..-.... + ...+.....+ +|.||+|+.-.+
T Consensus 33 g~~v~~~~~~~~~~-~~~~~~~~~~--~d~ii~Gspty~ 68 (159)
T 3fni_A 33 GVGVDVVDLGAAVD-LQELRELVGR--CTGLVIGMSPAA 68 (159)
T ss_dssp TCEEEEEESSSCCC-HHHHHHHHHT--EEEEEEECCBTT
T ss_pred CCeEEEEECcCcCC-HHHHHHHHHh--CCEEEEEcCcCC
Confidence 666666655544 4 4445544444 899999998654
No 86
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=46.78 E-value=8.6 Score=28.06 Aligned_cols=59 Identities=12% Similarity=0.005 Sum_probs=35.3
Q ss_pred chHHHHHHHHHhcCCCEEEEeeCCCCc-ccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 145 DMRERLCLEIERLSLSAVIMGSRGFGA-EKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 145 ~~~~~I~~~a~~~~~dlIV~G~~~~~~-~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
...+.|.+.+++++++.||+|..-... .....-...-.++..+....++||..|.....
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 358899999999999999999542110 00000000012333455556899999876443
No 87
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=46.41 E-value=69 Score=26.04 Aligned_cols=23 Identities=4% Similarity=0.030 Sum_probs=19.6
Q ss_pred cEEEEEecCChhHHHHHHHHHHH
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHH 64 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~l 64 (232)
.+|+|++.|-.+|.-.+..+...
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~ 76 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSC 76 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHH
Confidence 58999999999999888877765
No 88
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=46.10 E-value=40 Score=28.12 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=36.7
Q ss_pred CcceEEEEeeCCc---hHHHHHHHHHhcCCCEEE-EeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 133 GFPYKIHIVKDHD---MRERLCLEIERLSLSAVI-MGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 133 ~~~v~~~~~~g~~---~~~~I~~~a~~~~~dlIV-~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
++.+.+....|.+ ..+.+.+.+++.++|+|| +|... .+.++.-+.....+|++.||..
T Consensus 58 g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGs-----------v~D~aK~iA~~~~~p~i~IPTT 119 (370)
T 1jq5_A 58 NIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGK-----------TLDTAKAVADELDAYIVIVPTA 119 (370)
T ss_dssp TCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH-----------HHHHHHHHHHHHTCEEEEEESS
T ss_pred CCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChH-----------HHHHHHHHHHhcCCCEEEeccc
Confidence 6666444445543 245677778889999888 55332 2234444444457999999985
No 89
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=43.91 E-value=70 Score=21.36 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+..+...++..+|+|++...-.+...++ .....+-....+||+++-..
T Consensus 43 ~~~a~~~~~~~~~dlii~d~~~~~~~~g~------~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 43 GEEAVRCAPDLRPDIALVDIMLCGALDGV------ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCCSSSCHH------HHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCCHH------HHHHHHHhCCCCCEEEEecC
Confidence 44455666677899999997642112221 23333333356899988543
No 90
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=43.83 E-value=1.2e+02 Score=23.88 Aligned_cols=39 Identities=3% Similarity=-0.138 Sum_probs=31.1
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
+.+|+|++.+-.+|...+..+.++... +.++.++|+-..
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg 79 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTL 79 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCS
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCC
Confidence 457999999999999999988887654 557788888543
No 91
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=43.38 E-value=1.3e+02 Score=24.42 Aligned_cols=84 Identities=7% Similarity=0.051 Sum_probs=50.5
Q ss_pred CcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHH
Q 026810 41 RRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTAT 120 (232)
Q Consensus 41 ~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (232)
.+||+|-+.++..+..++-++.+- ...+++|.++-...... ++ +
T Consensus 105 ~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~I~~Visn~~~~------------------------~~-~---------- 148 (302)
T 3o1l_A 105 KKRVVLMASRESHCLADLLHRWHS-DELDCDIACVISNHQDL------------------------RS-M---------- 148 (302)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHT-TCSCSEEEEEEESSSTT------------------------HH-H----------
T ss_pred CcEEEEEEeCCchhHHHHHHHHHC-CCCCcEEEEEEECcHHH------------------------HH-H----------
Confidence 578888888888887877776652 33456665544432110 00 0
Q ss_pred HHHHhhhhhhhCCcceEEEEeeC-Cc--hHHHHHHHHHhcCCCEEEEeeCC
Q 026810 121 KAADLARPLKEAGFPYKIHIVKD-HD--MRERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 121 ~~~~~~~~~~~~~~~v~~~~~~g-~~--~~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
....|+++...-... +. -...+++..++.++|+||+...+
T Consensus 149 --------A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 149 --------VEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp --------HHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred --------HHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 122377765432111 11 13568889999999999998765
No 92
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=43.38 E-value=39 Score=25.74 Aligned_cols=36 Identities=17% Similarity=0.035 Sum_probs=29.1
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEE
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHV 77 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v 77 (232)
++|++++-++-.+.++++..-.+.+..|.+++++-.
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~T 36 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMS 36 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEEC
Confidence 379999999999999998888876644888877653
No 93
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=43.12 E-value=29 Score=30.00 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhC
Q 026810 53 ESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTATKAADLARPLKEA 132 (232)
Q Consensus 53 ~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (232)
....||.+|++ .+.+|..|+|.++........ . ..... .++.+.+..+.+.+...
T Consensus 14 ~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~--~-----------~~~r~--------~Fl~~sL~~L~~~L~~~ 68 (440)
T 2e0i_A 14 EDNTGLNYALS----ECDRVIPVFIADPRQLINNPY--K-----------SEFAV--------SFMINSLLELDDELRKK 68 (440)
T ss_dssp SSCHHHHHHHH----HSSEEEEEEEECHHHHSSCTT--C-----------CHHHH--------HHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHh----cCCCEEEEEEeChhhhccCCc--C-----------CHHHH--------HHHHHHHHHHHHHHHHc
Confidence 34456676766 356899999986432100000 0 11111 12223334444455555
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
|+++.+. .|+ +.+.|.+.++ +++.|+.-.. ......- .-....+.+...++++..+...
T Consensus 69 G~~L~v~--~g~-~~~~l~~l~~--~~~~v~~~~~-~~~~~~~----rd~~v~~~l~~~gi~~~~~~~~ 127 (440)
T 2e0i_A 69 GSRLNVF--FGE-AEKVVSRFFN--KVDAIYVNED-YTPFSIS----RDEKIRKVCEENGIEFKAYEDY 127 (440)
T ss_dssp TCCCEEE--ESC-HHHHHHHHCT--TCSEEEEECC-CSHHHHH----HHHHHHHHHHTTTCEEEEECCS
T ss_pred CCeEEEE--ECC-HHHHHHHHHc--CCCEEEEecc-cChHHHH----HHHHHHHHHHHcCceEEEecCC
Confidence 7666554 565 5888888888 8998887543 2222211 1123334455557777777653
No 94
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=42.60 E-value=1.3e+02 Score=24.19 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=24.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEE
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVH 76 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~ 76 (232)
..+||+|-+.++.....++-++.+- ....++|.++-
T Consensus 88 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~i~~Vi 123 (288)
T 3obi_A 88 TRRKVMLLVSQSDHCLADILYRWRV-GDLHMIPTAIV 123 (288)
T ss_dssp SCEEEEEEECSCCHHHHHHHHHHHT-TSSCEEEEEEE
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHC-CCCCeEEEEEE
Confidence 3578999999998888887777652 33445554433
No 95
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=41.92 E-value=1.3e+02 Score=23.88 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEc
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp 199 (232)
+.+.|.+.+++.+.|+|+.-..+.+.-... ..+..+...++...+|+++..
T Consensus 136 l~~~l~~~ir~~~PdvV~t~~~~d~HpDH~---~~~~a~~~A~~~~~~~~~~~e 186 (273)
T 3dff_A 136 VADDIRSIIDEFDPTLVVTCAAIGEHPDHE---ATRDAALFATHEKNVPVRLWE 186 (273)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTCCHHHH---HHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCChHHH---HHHHHHHHHHHHcCCCEEEec
Confidence 456677888999999999965443333333 345555566666778877764
No 96
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=41.67 E-value=78 Score=21.31 Aligned_cols=50 Identities=8% Similarity=-0.040 Sum_probs=29.0
Q ss_pred HHHHHHHHHh-cCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 147 RERLCLEIER-LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 147 ~~~I~~~a~~-~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
.+++ ....+ ..+|+|++...-.....++ .....+-.+..+||+++-....
T Consensus 39 ~~a~-~~l~~~~~~dlvi~D~~l~~~~~g~------~~~~~l~~~~~~~ii~ls~~~~ 89 (140)
T 3h5i_A 39 EAAV-EKVSGGWYPDLILMDIELGEGMDGV------QTALAIQQISELPVVFLTAHTE 89 (140)
T ss_dssp HHHH-HHHHTTCCCSEEEEESSCSSSCCHH------HHHHHHHHHCCCCEEEEESSSS
T ss_pred HHHH-HHHhcCCCCCEEEEeccCCCCCCHH------HHHHHHHhCCCCCEEEEECCCC
Confidence 4444 44444 7899999997632112222 2344444446799998865433
No 97
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=41.57 E-value=1.2e+02 Score=23.21 Aligned_cols=36 Identities=8% Similarity=0.031 Sum_probs=23.4
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~ 78 (232)
+||.|-+.++-.+..++-.+.+ ....+.+|.+|-..
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~-~~~~~~~I~~Vvs~ 36 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTR-EPNSSAQIDIVISN 36 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHH-STTCSCEEEEEEES
T ss_pred CeEEEEEECCchHHHHHHHHHh-cCCCCcEEEEEEeC
Confidence 3788888988888888765554 22245666555443
No 98
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=41.38 E-value=1.2e+02 Score=23.46 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCCEEEEeeCCC-------------------CcccccCCCccC-c-hhHHHhcc---CCCcEEEEcCCCC
Q 026810 148 ERLCLEIERLSLSAVIMGSRGF-------------------GAEKRGSDGKLG-S-VSDYCVHH---CVCPVVVVRYPDD 203 (232)
Q Consensus 148 ~~I~~~a~~~~~dlIV~G~~~~-------------------~~~~~~~~~~~g-s-~~~~vl~~---~~~PVliVp~~~~ 203 (232)
..+++..++.++|+||+...++ +.+-++ -| + .-+.++.. +.|.|+.|- ..
T Consensus 91 ~~~~~~l~~~~~Dliv~agy~~IL~~~~l~~~~~~~iNiHpSLLP~y----rG~~pi~~Ai~~G~~~tGvTvh~v~--~~ 164 (229)
T 3auf_A 91 AALAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAF----PGLEAQRQALEHGVKVAGCTVHFVT--AG 164 (229)
T ss_dssp HHHHHHHHHTTCSEEEESSCCSCCCHHHHHHSTTCEEEEESSCTTSS----CSSCHHHHHHHHTCSEEEEEEEECC--SS
T ss_pred HHHHHHHHhcCCCEEEEcChhHhCCHHHHhhccCCEEEEccCcCcCC----CCcCHHHHHHHcCCCeEEEEEEEEC--CC
Confidence 5678888899999999987642 222222 22 2 23334433 346776665 45
Q ss_pred CCCCCceEEecCCCCCCC-chHHhhhcc
Q 026810 204 KDDGEPLVKVKEPEKDDE-DDHVDRKLK 230 (232)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 230 (232)
.+.+.++.....+=..++ ...|.+++.
T Consensus 165 ~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~ 192 (229)
T 3auf_A 165 VDEGPIILQAAVPVLEGDTVEDLRRRIL 192 (229)
T ss_dssp TTCSCEEEEEEEECCTTCCHHHHHHHHH
T ss_pred CcCCCEEEEEEEecCCCCCHHHHHHHHH
Confidence 566777766655443333 334555543
No 99
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=40.92 E-value=1.8e+02 Score=25.22 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
..++|+|++.+-.+|..++.|+.+. |.+|+.+|+...
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~G 45 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLG 45 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEcC
Confidence 3579999999999999999988762 789999999743
No 100
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=40.84 E-value=41 Score=25.41 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=28.6
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 39 ~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
|.+++|+|++.+-..|..++..+.+ .+.++..+|+...
T Consensus 4 m~~~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~ 41 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFG 41 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECS
T ss_pred ccCCeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCC
Confidence 3468999999999999888765543 4678999998743
No 101
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=40.72 E-value=1.7e+02 Score=24.81 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=29.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
...+++|++.|-.+|..++..+.+ .|.++..+|+..
T Consensus 186 ~~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 186 VGGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TTEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 357999999999999888877765 378899999863
No 102
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=40.21 E-value=1.2e+02 Score=24.94 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=26.0
Q ss_pred CCCEEEEeeCC---CCcccccCCCccCc-hhHHHhccCCCcEEEEcC
Q 026810 158 SLSAVIMGSRG---FGAEKRGSDGKLGS-VSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 158 ~~dlIV~G~~~---~~~~~~~~~~~~gs-~~~~vl~~~~~PVliVp~ 200 (232)
.+|+|++|..+ .|.+... .|. ...-+.++.++||+++-+
T Consensus 189 ~vd~VivGAd~i~~nG~v~nk----iGT~~iAl~Ak~~~vP~~V~a~ 231 (315)
T 3ecs_A 189 KADLVIVGAEGVVENGGIINK----IGTNQMAVCAKAQNKPFYVVAE 231 (315)
T ss_dssp GCSEEEEECSEECTTSCEEEE----TTHHHHHHHHHHTTCCEEEECC
T ss_pred hCCEEEECceEEecCCCeeeh----hhhHHHHHHHHHhCCCEEEEec
Confidence 59999999975 2333332 343 344456678999999954
No 103
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=39.25 E-value=1.5e+02 Score=23.91 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=51.8
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
..+||+|-+.++..+..++-++.+- ...+++|.++-...... +. +
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~~------------------------~~-~--------- 138 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKM-GELKMDIVGIVSNHPDF------------------------AP-L--------- 138 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEEEESSSTT------------------------HH-H---------
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHc-CCCCcEEEEEEeCcHHH------------------------HH-H---------
Confidence 3578999999998888888777663 33566665544332110 00 1
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeC-Cc--hHHHHHHHHHhcCCCEEEEeeCC
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKD-HD--MRERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g-~~--~~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
....|+++...-... +. -...+++..++.++|+||+...+
T Consensus 139 ---------A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 139 ---------AAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp ---------HHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ---------HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 112377765432211 11 13468888899999999998765
No 104
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=38.80 E-value=1.3e+02 Score=24.37 Aligned_cols=35 Identities=26% Similarity=0.160 Sum_probs=28.1
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
++|+|++.|-.+|..++..+.+. .|.++..+|+-.
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd~ 55 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVNT 55 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEEC
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEcC
Confidence 68999999999998888777664 256788898864
No 105
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=38.48 E-value=1.5e+02 Score=23.77 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=50.7
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecCCccCCCCCCCCCccccCcchhhhHHHHHHHHHHHHHHHH
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPTSVLFGADWGPLPQQQINSENASNIEHQKQLEDDFDTFTA 119 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (232)
..+||+|-+.++..+..++-++.+- ...+++|.++-...... +. +
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~~------------------------~~-~--------- 133 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRI-GQLGMDVVAVVSNHPDL------------------------EP-L--------- 133 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHT-TSSCCEEEEEEESSSTT------------------------HH-H---------
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHC-CCCCcEEEEEEeCcHHH------------------------HH-H---------
Confidence 3568999999988888887777652 33456665544332110 00 1
Q ss_pred HHHHHhhhhhhhCCcceEEEEeeC-Cc--hHHHHHHHHHhcCCCEEEEeeCC
Q 026810 120 TKAADLARPLKEAGFPYKIHIVKD-HD--MRERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~g-~~--~~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
....|+++...-... +. -...+++..++.++|+||+...+
T Consensus 134 ---------A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 134 ---------AHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp ---------HHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ---------HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 112377765432211 11 13468888899999999998764
No 106
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=36.34 E-value=97 Score=23.18 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=23.3
Q ss_pred CCcEEEEEec-CC--hhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 026810 40 ARRKIGVAVD-LS--DESAFAVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 40 ~~~~ILv~vD-~s--~~s~~al~~A~~la~~~~~~l~ll~v~ 78 (232)
|.++|+|-+- .. ..+...++++.+++. .+.++.++...
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~~~~~~~idl~ 41 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAE-GRLEFHLLHIG 41 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHT-TTEEEEECCGG
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhcc-CCCEEEEEecc
Confidence 3567776442 12 245677888888876 46677766543
No 107
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=36.34 E-value=36 Score=26.00 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=32.5
Q ss_pred cCCCEEEEeeCCCCcccccCCCccCchhHHHhc---cCCCcEEEEcCCCCC
Q 026810 157 LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH---HCVCPVVVVRYPDDK 204 (232)
Q Consensus 157 ~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~---~~~~PVliVp~~~~~ 204 (232)
..+|++|+..-..+.+.++..|+-.+....++. ...+||+++|...+.
T Consensus 85 ~~aD~mvIaP~TanTlAkiA~GiaDnLlt~aa~~~Lk~~~plvl~Pamn~~ 135 (201)
T 3lqk_A 85 TPLDCMVIAPMTGNSTSKFANAMTDSPVLMGAKATLRNGKPVVVGISTNDA 135 (201)
T ss_dssp SCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred cccCEEEEccCCHHHHHHHHCcccCcHHHHHHHHHhhcCCCEEEEECCChh
Confidence 458999999888888877744444444333332 358999999985553
No 108
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=35.90 E-value=1.4e+02 Score=22.70 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCCEEEEeeCC
Q 026810 148 ERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 148 ~~I~~~a~~~~~dlIV~G~~~ 168 (232)
..+++..++.++|+||+...+
T Consensus 70 ~~~~~~l~~~~~Dliv~a~y~ 90 (216)
T 2ywr_A 70 ERMALELKKKGVELVVLAGFM 90 (216)
T ss_dssp HHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEEeCch
Confidence 567888889999999998764
No 109
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=35.83 E-value=1.3e+02 Score=24.29 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=26.5
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEe
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~ 78 (232)
...++++++.+ -+|.-++-.+.+ .|.+++.+|..
T Consensus 178 ~~~kvlvllSG-vDS~vaa~ll~~----~G~~v~~v~~~ 211 (307)
T 1vbk_A 178 TEGRMIGILHD-ELSALAIFLMMK----RGVEVIPVYIG 211 (307)
T ss_dssp TTCEEEEECSS-HHHHHHHHHHHH----BTCEEEEEEES
T ss_pred CCCcEEEEEeC-CcHHHHHHHHHh----CCCeEEEEEEE
Confidence 34799999999 888766554443 68999999986
No 110
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=35.58 E-value=67 Score=22.53 Aligned_cols=61 Identities=15% Similarity=-0.027 Sum_probs=37.4
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC--CCcEEEEcC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC--VCPVVVVRY 200 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~--~~PVliVp~ 200 (232)
|.++...-. +.+.+.+++.+.++++|+|.+.+........ +..+.+.+-... +++|++=-.
T Consensus 31 G~~Vi~lG~--~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~-----~~~~i~~l~~~g~~~i~v~vGG~ 93 (137)
T 1ccw_A 31 GFNVVNIGV--LSPQELFIKAAIETKADAILVSSLYGQGEID-----CKGLRQKCDEAGLEGILLYVGGN 93 (137)
T ss_dssp TCEEEEEEE--EECHHHHHHHHHHHTCSEEEEEECSSTHHHH-----HTTHHHHHHHTTCTTCEEEEEES
T ss_pred CCEEEECCC--CCCHHHHHHHHHhcCCCEEEEEecCcCcHHH-----HHHHHHHHHhcCCCCCEEEEECC
Confidence 655443322 3458899999999999999999865433322 234555443332 366766543
No 111
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=35.45 E-value=36 Score=26.22 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=34.2
Q ss_pred hcCCCEEEEeeCCCCcccccCCCccCchhHH---HhccCCCcEEEEcCCCCC
Q 026810 156 RLSLSAVIMGSRGFGAEKRGSDGKLGSVSDY---CVHHCVCPVVVVRYPDDK 204 (232)
Q Consensus 156 ~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~---vl~~~~~PVliVp~~~~~ 204 (232)
...+|++|+..-..+.+.++..|+-.+.... ++....+||+++|...+.
T Consensus 82 s~~aD~mvIaPaTanTlAKiA~GiaDnLlt~aa~~~L~~~~plvlaPamn~~ 133 (207)
T 3mcu_A 82 KIPLDCMVIAPLTGNSMSKFANAMTDSPVLMAAKATLRNGKPVVLAVSTNDA 133 (207)
T ss_dssp TSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred chhcCEEEEecCCHHHHHHHHccccCcHHHHHHHHHHhcCCCEEEEECCChh
Confidence 4569999999888888777754454444444 444578999999975443
No 112
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=34.63 E-value=1.9e+02 Score=23.65 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=22.4
Q ss_pred CChhHHHHHHHHHHHhCCCC-CEEEEEEEe
Q 026810 50 LSDESAFAVRWAVHHYLRPG-DAVILVHVS 78 (232)
Q Consensus 50 ~s~~s~~al~~A~~la~~~~-~~l~ll~v~ 78 (232)
.++.+..++..|.+++. .+ .+++++.+-
T Consensus 14 l~~~~~eal~~A~~L~e-~g~~~V~av~~G 42 (320)
T 1o97_D 14 LRPVSLELIGAANGLKK-SGEDKVVVAVIG 42 (320)
T ss_dssp ECTHHHHHHHHHHHHCS-STTCEEEEEEES
T ss_pred cCHHHHHHHHHHHHHhh-CCCCcEEEEEEC
Confidence 35789999999999987 66 588887665
No 113
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=34.05 E-value=1.5e+02 Score=23.93 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCccc-ccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEK-RGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~-~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.+.+++.++|.+++...-..... +. ++ .--..|...++.||+++..+
T Consensus 98 ~la~~A~~~Gadavlv~~P~y~~~s~~~---l~-~~f~~va~a~~lPiilYn~P 147 (301)
T 1xky_A 98 DLTKKATEVGVDAVMLVAPYYNKPSQEG---MY-QHFKAIAESTPLPVMLYNVP 147 (301)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHH---HH-HHHHHHHHTCSSCEEEEECH
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHH---HH-HHHHHHHHhcCCCEEEEeCc
Confidence 4567788999999988876543221 11 22 23345777889999999753
No 114
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=33.64 E-value=18 Score=27.88 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=27.8
Q ss_pred CCCcEEEEEecCChhHHH-HHHHHHHHhCCCCCEEEEEEEe
Q 026810 39 LARRKIGVAVDLSDESAF-AVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 39 ~~~~~ILv~vD~s~~s~~-al~~A~~la~~~~~~l~ll~v~ 78 (232)
...++|++++.||-.+.+ +++..-.+.+ .|.+++++-.-
T Consensus 3 l~~k~IllgiTGsiaayk~~~~ll~~L~~-~g~eV~vv~T~ 42 (207)
T 3mcu_A 3 LKGKRIGFGFTGSHCTYEEVMPHLEKLIA-EGAEVRPVVSY 42 (207)
T ss_dssp CTTCEEEEEECSCGGGGTTSHHHHHHHHH-TTCEEEEEECC
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHHHHh-CCCEEEEEEeh
Confidence 356899999999976665 6776655544 58888776543
No 115
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=33.23 E-value=1.9e+02 Score=23.25 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=41.0
Q ss_pred CcceEEEEeeCCch--HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 133 GFPYKIHIVKDHDM--RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 133 ~~~v~~~~~~g~~~--~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.+++-.-+.. .+. +-.+.+.+++.++|.+++..........- +++ .--+.|...++.||+++..+.
T Consensus 73 rvpviaGvg~-~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~--~l~-~~f~~va~a~~lPiilYn~P~ 140 (300)
T 3eb2_A 73 RVPVVAGVAS-TSVADAVAQAKLYEKLGADGILAILEAYFPLKDA--QIE-SYFRAIADAVEIPVVIYTNPQ 140 (300)
T ss_dssp SSCBEEEEEE-SSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHH--HHH-HHHHHHHHHCSSCEEEEECTT
T ss_pred CCcEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHH--HHH-HHHHHHHHHCCCCEEEEECcc
Confidence 3555444433 233 34556788899999999987654332211 022 234567888899999997654
No 116
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=33.22 E-value=1.1e+02 Score=20.54 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhc---cCCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH---HCVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~---~~~~PVliVp~~ 201 (232)
.+..+...+...+|+|++...-. ...++ ....++-. ...+||+++-..
T Consensus 40 ~~~a~~~l~~~~~dlii~D~~l~-~~~g~------~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 40 GAKALYQVQQAKYDLIILDIGLP-IANGF------EVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHHHHTTCCCSEEEECTTCG-GGCHH------HHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHHHHhhcCCCCEEEEeCCCC-CCCHH------HHHHHHHhcccccCCCEEEEeCC
Confidence 44555667788999999987532 11111 23444443 246899988653
No 117
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=32.69 E-value=62 Score=23.52 Aligned_cols=60 Identities=7% Similarity=-0.018 Sum_probs=36.8
Q ss_pred eEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC--CCcEEEEcC
Q 026810 136 YKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC--VCPVVVVRY 200 (232)
Q Consensus 136 v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~--~~PVliVp~ 200 (232)
+++...-.+.+.+.+++.+.+.++|+|.+.......... +..+.+.+-... +++|++=-.
T Consensus 47 ~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~-----~~~~i~~L~~~g~~~i~v~vGG~ 108 (161)
T 2yxb_A 47 FEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHL-----MKRLMAKLRELGADDIPVVLGGT 108 (161)
T ss_dssp CEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHH-----HHHHHHHHHHTTCTTSCEEEEEC
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHH-----HHHHHHHHHhcCCCCCEEEEeCC
Confidence 344444334468889999999999999998865433322 233444333332 477777654
No 118
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=32.33 E-value=1.5e+02 Score=23.91 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.+.+++.++|.+++-.........- +++ .--..|...++.||+++..+
T Consensus 98 ~la~~A~~~Gadavlv~~P~y~~~s~~--~l~-~~f~~va~a~~lPiilYn~P 147 (306)
T 1o5k_A 98 KLVKQAEKLGANGVLVVTPYYNKPTQE--GLY-QHYKYISERTDLGIVVYNVP 147 (306)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHH--HHH-HHHHHHHTTCSSCEEEEECH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHH--HHH-HHHHHHHHhCCCCEEEEeCc
Confidence 456778889999999887654322111 022 23345777889999999753
No 119
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=32.26 E-value=1.2e+02 Score=20.48 Aligned_cols=48 Identities=6% Similarity=-0.106 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhc---cCCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH---HCVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~---~~~~PVliVp~~ 201 (232)
.+..+...+...+|+|++...-.+ ..++ .....+-. ...+||+++-..
T Consensus 41 ~~~a~~~l~~~~~dlii~d~~l~~-~~g~------~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 41 AIEAVPVAVKTHPHLIITEANMPK-ISGM------DLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCSS-SCHH------HHHHHHHTSTTTTTSCEEEEESS
T ss_pred HHHHHHHHHcCCCCEEEEcCCCCC-CCHH------HHHHHHHcCcccCCCCEEEEeCC
Confidence 444556667778999999975322 2121 34444444 356899988643
No 120
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=32.16 E-value=82 Score=24.99 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 150 LCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 150 I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
++..+++.+.|++|+.+..... .+ ..-+..++....+|++|+-.
T Consensus 56 ~~~~~~~~~pDfvI~isPN~a~-PG------P~~ARE~l~~~~iP~IvI~D 99 (283)
T 1qv9_A 56 ALDIAEDFEPDFIVYGGPNPAA-PG------PSKAREMLADSEYPAVIIGD 99 (283)
T ss_dssp HHHHHHHHCCSEEEEECSCTTS-HH------HHHHHHHHHTSSSCEEEEEE
T ss_pred hhhhhhhcCCCEEEEECCCCCC-CC------chHHHHHHHhCCCCEEEEcC
Confidence 3445588999999999875432 22 24667788889999999965
No 121
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=32.10 E-value=1.6e+02 Score=22.04 Aligned_cols=35 Identities=3% Similarity=0.025 Sum_probs=28.1
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
.+|+|++.|-.+|..++..+.++. .++.++|+-..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g 79 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTG 79 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCC
Confidence 589999999999999888777763 45788888653
No 122
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=32.05 E-value=1.4e+02 Score=23.87 Aligned_cols=50 Identities=12% Similarity=0.154 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.+.+++.++|.+++-.........- +++ ..-..|...++.||+++..+
T Consensus 86 ~la~~A~~~Gadavlv~~P~y~~~s~~--~l~-~~f~~ia~a~~lPiilYn~P 135 (292)
T 2vc6_A 86 AFVRHAQNAGADGVLIVSPYYNKPTQE--GIY-QHFKAIDAASTIPIIVYNIP 135 (292)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHH--HHH-HHHHHHHHHCSSCEEEEECH
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCHH--HHH-HHHHHHHHhCCCCEEEEeCc
Confidence 456778999999999887654322111 011 22235777889999998653
No 123
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=31.95 E-value=1.1e+02 Score=20.34 Aligned_cols=47 Identities=11% Similarity=-0.033 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc-CCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~-~~~PVliVp~~ 201 (232)
....+...+...+|+|++.. - ....++ .....+-.. ..+||+++-..
T Consensus 37 ~~~a~~~l~~~~~dlvi~d~-~-~~~~g~------~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 37 EQEAFTFLRREKIDLVFVDV-F-EGEESL------NLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHHHTTSCCSEEEEEC-T-TTHHHH------HHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHhccCCCEEEEeC-C-CCCcHH------HHHHHHHHHCCCCCEEEEECC
Confidence 44555677778999999997 3 222222 233444333 35899988543
No 124
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=31.68 E-value=1.5e+02 Score=23.76 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=37.3
Q ss_pred EEEEeeCC-chHH--HHHHHHHhcCCCEEEEeeCCCCccc-ccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 137 KIHIVKDH-DMRE--RLCLEIERLSLSAVIMGSRGFGAEK-RGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 137 ~~~~~~g~-~~~~--~I~~~a~~~~~dlIV~G~~~~~~~~-~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+....|. +..+ .+.+.+++.++|.+++......... +. ++ .--..|...++.||+++..+
T Consensus 71 pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~---l~-~~f~~va~a~~lPiilYn~P 135 (294)
T 2ehh_A 71 KVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRG---LY-EHFKTVAQEVDIPIIIYNIP 135 (294)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHH---HH-HHHHHHHHHCCSCEEEEECH
T ss_pred cEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHH---HH-HHHHHHHHhcCCCEEEEeCC
Confidence 34444443 3344 3467788999999988876543221 11 22 22345777789999999753
No 125
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=31.67 E-value=1.6e+02 Score=23.86 Aligned_cols=59 Identities=7% Similarity=-0.022 Sum_probs=36.3
Q ss_pred EEEeeCCchHH--HHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEc
Q 026810 138 IHIVKDHDMRE--RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 138 ~~~~~g~~~~~--~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp 199 (232)
+....|.+..+ .+.+.+++.++|.+++-.........- +++ .--..|...++.||+++.
T Consensus 84 ViaGvg~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~--~l~-~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 84 VVAGIGYSVDTAIELGKSAIDSGADCVMIHQPVHPYITDA--GAV-EYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHH--HHH-HHHHHHHHHSSSCEEEEE
T ss_pred EEecCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHH--HHH-HHHHHHHHhCCCCEEEEe
Confidence 33333334344 357778899999999987654322111 022 233457778899999998
No 126
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=31.65 E-value=1.7e+02 Score=25.03 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=29.4
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
|..+|+|++.+--+|..++.|+.+ .|.+|+.+++-.
T Consensus 13 ~~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d~ 48 (421)
T 1vl2_A 13 MKEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANV 48 (421)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEES
T ss_pred ccCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEEc
Confidence 568899999999999998888765 378899888863
No 127
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.57 E-value=84 Score=20.88 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=26.8
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRG 168 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~ 168 (232)
+..+.+.++....+++..+++.+..++..+++-...
T Consensus 50 nativvvvvddkewaekairfvkslgaqvliiiydq 85 (134)
T 2l69_A 50 NATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQ 85 (134)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEECS
T ss_pred CCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 455566666666688899999999999887776543
No 128
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=31.50 E-value=1.3e+02 Score=20.87 Aligned_cols=47 Identities=6% Similarity=-0.083 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHh---ccCCCcEEEEcC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCV---HHCVCPVVVVRY 200 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl---~~~~~PVliVp~ 200 (232)
+...++..++..+|+|++-..- ....++ .+.+++= ....+||+++-.
T Consensus 46 g~~al~~~~~~~~DlillD~~M-P~mdG~------el~~~ir~~~~~~~ipvI~lTa 95 (134)
T 3to5_A 46 GLTALPMLKKGDFDFVVTDWNM-PGMQGI------DLLKNIRADEELKHLPVLMITA 95 (134)
T ss_dssp HHHHHHHHHHHCCSEEEEESCC-SSSCHH------HHHHHHHHSTTTTTCCEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEcCCC-CCCCHH------HHHHHHHhCCCCCCCeEEEEEC
Confidence 3444566677899999999863 333333 3344332 124689998864
No 129
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=31.47 E-value=97 Score=19.83 Aligned_cols=47 Identities=9% Similarity=-0.015 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
....+.......+|+|++...-.+ ..++ ....++-....+|++++-.
T Consensus 34 ~~~a~~~~~~~~~dlvl~D~~l~~-~~g~------~~~~~l~~~~~~~ii~~s~ 80 (120)
T 2a9o_A 34 GREALEQFEAEQPDIIILDLMLPE-IDGL------EVAKTIRKTSSVPILMLSA 80 (120)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSS-SCHH------HHHHHHHHHCCCCEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEeccCCC-CCHH------HHHHHHHhCCCCCEEEEec
Confidence 334445556678999999875322 2121 2344444446789988854
No 130
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=31.40 E-value=61 Score=18.19 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=22.9
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCE
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSA 161 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dl 161 (232)
.-.+..+.....+..+.|+.++++.+.|-
T Consensus 9 kkkvslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 9 KKKVSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp CCCEEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred cceeEEEEeeCCchhHHHHHHHHHccchh
Confidence 45677777777677999999999988774
No 131
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=31.31 E-value=1.4e+02 Score=22.40 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=24.3
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF 169 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~ 169 (232)
+..+++.....++-...+.+...+ +|.||+++.-.
T Consensus 47 g~~v~~~dL~~~~d~~~~~~~l~~--AD~iV~~~P~y 81 (204)
T 2amj_A 47 GHDVRIVRADSDYDVKAEVQNFLW--ADVVIWQMPGW 81 (204)
T ss_dssp TCEEEEEESSSCCCHHHHHHHHHH--CSEEEEEEECB
T ss_pred CCEEEEEeCCccccHHHHHHHHHh--CCEEEEECCcc
Confidence 566666666543336667777777 99999998753
No 132
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=31.03 E-value=1.2e+02 Score=20.63 Aligned_cols=48 Identities=4% Similarity=-0.108 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc-CCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~-~~~PVliVp~~ 201 (232)
....+...++..+|+|++...-.+ ..++ ....++-.. ..+||+++-..
T Consensus 47 ~~~a~~~l~~~~~dlvi~D~~l~~-~~g~------~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 47 ATQALQLLASREVDLVISAAHLPQ-MDGP------TLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSS-SCHH------HHHHHHHHHCTTSEEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCc-CcHH------HHHHHHHhHCCCCeEEEEECC
Confidence 444556667789999999976322 2222 233333333 46899888653
No 133
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=31.02 E-value=1.6e+02 Score=24.15 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.+.+++.++|.+++...-......- +++ .--..|...++.||+++..+
T Consensus 120 ~la~~A~~~Gadavlv~~P~Y~~~s~~--~l~-~~f~~VA~a~~lPiilYn~P 169 (332)
T 2r8w_A 120 ALAKDAEAAGADALLLAPVSYTPLTQE--EAY-HHFAAVAGATALPLAIYNNP 169 (332)
T ss_dssp HHHHHHHHHTCSEEEECCCCSSCCCHH--HHH-HHHHHHHHHCSSCEEEECCH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHH--HHH-HHHHHHHHhcCCCEEEEeCc
Confidence 346778899999999987654322111 022 22345777889999999753
No 134
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=30.69 E-value=1.5e+02 Score=24.45 Aligned_cols=49 Identities=8% Similarity=0.175 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCccc-ccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEK-RGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~-~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.+.+++.++|.+++-..-..... +. ++ .--..|...++.||+++..+
T Consensus 117 ~la~~A~~~Gadavlv~~P~Y~~~s~~~---l~-~~f~~VA~a~~lPiilYn~P 166 (343)
T 2v9d_A 117 ELSQHAQQAGADGIVVINPYYWKVSEAN---LI-RYFEQVADSVTLPVMLYNFP 166 (343)
T ss_dssp HHHHHHHHHTCSEEEEECCSSSCCCHHH---HH-HHHHHHHHTCSSCEEEEECH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHH---HH-HHHHHHHHhcCCCEEEEeCc
Confidence 4567788999999988876543221 11 22 23345777889999999753
No 135
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=30.61 E-value=1.2e+02 Score=24.62 Aligned_cols=61 Identities=11% Similarity=-0.076 Sum_probs=37.0
Q ss_pred cceEEEEeeCCchHH--HHHHHHHhcCCCEEEEeeCCCCccc-ccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 134 FPYKIHIVKDHDMRE--RLCLEIERLSLSAVIMGSRGFGAEK-RGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 134 ~~v~~~~~~g~~~~~--~I~~~a~~~~~dlIV~G~~~~~~~~-~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
+++-.-+ |.+..+ .+.+.+++.++|.+++...-..... +. ++ .--..|...++.||+++..
T Consensus 82 vpViaGv--g~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~---l~-~~f~~va~a~~lPiilYn~ 145 (316)
T 3e96_A 82 ALVVAGI--GYATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGG---VY-AYFRDIIEALDFPSLVYFK 145 (316)
T ss_dssp SEEEEEE--CSSHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHH---HH-HHHHHHHHHHTSCEEEEEC
T ss_pred CcEEEEe--CcCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHH---HH-HHHHHHHHhCCCCEEEEeC
Confidence 4444443 445444 4456788899999999765432211 11 12 2334567777899999984
No 136
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=30.26 E-value=1.1e+02 Score=19.67 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc---CCCcEEEE
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVV 198 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~---~~~PVliV 198 (232)
.+..+...+...+|+|++...-.+...++ ...+++-.. ..+||+++
T Consensus 38 ~~~a~~~~~~~~~dlvi~d~~~~~~~~g~------~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 38 GKGSVEQIRRDRPDLVVLAVDLSAGQNGY------LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHHCCSEEEEESBCGGGCBHH------HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCCHH------HHHHHHhcCccccCCCEEEE
Confidence 34445566777899999987632122221 234444443 46999999
No 137
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=30.21 E-value=1.2e+02 Score=19.83 Aligned_cols=49 Identities=8% Similarity=-0.138 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc---CCCcEEEEcCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRYPD 202 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~---~~~PVliVp~~~ 202 (232)
.+..+...++..+|+|++...-.+ ..++ ....++-.. ..+||+++-...
T Consensus 36 ~~~a~~~l~~~~~dlii~D~~l~~-~~g~------~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 36 GTDALHAMSTRGYDAVFIDLNLPD-TSGL------ALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp HHHHHHHHHHSCCSEEEEESBCSS-SBHH------HHHHHHHHSCCSSCCEEEEEECC-
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC-CCHH------HHHHHHHhhhccCCCCEEEEECCc
Confidence 455556677789999999976322 2222 244444443 458888886533
No 138
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=30.19 E-value=1.6e+02 Score=23.68 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=37.2
Q ss_pred EEEEeeCC-chHH--HHHHHHHhcCCCEEEEeeCCCCccc-ccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 137 KIHIVKDH-DMRE--RLCLEIERLSLSAVIMGSRGFGAEK-RGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 137 ~~~~~~g~-~~~~--~I~~~a~~~~~dlIV~G~~~~~~~~-~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+....|. +..+ .+.+.+++.++|.+++...-..... +. ++ .--..|...++.||+++..+
T Consensus 87 pviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~---l~-~~f~~ia~a~~lPiilYn~P 151 (304)
T 3cpr_A 87 KLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEG---LL-AHFGAIAAATEVPICLYDIP 151 (304)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHH---HH-HHHHHHHHHCCSCEEEEECH
T ss_pred cEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHH---HH-HHHHHHHHhcCCCEEEEeCc
Confidence 34444443 3344 4577788999999988876543221 11 22 22345777889999999753
No 139
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=30.05 E-value=1.2e+02 Score=19.88 Aligned_cols=49 Identities=8% Similarity=-0.059 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc-CCCcEEEEcCCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVRYPD 202 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~-~~~PVliVp~~~ 202 (232)
.+..++..+...+|+|++...-.+ ..++ ....++-.. ..+||+++-...
T Consensus 40 ~~~a~~~l~~~~~dlvi~d~~l~~-~~g~------~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 40 GVDALELLGGFTPDLMICDIAMPR-MNGL------KLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp HHHHHHHHTTCCCSEEEECCC------CH------HHHHHHHHTTCCCCEEEEECCC
T ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CCHH------HHHHHHHhcCCCCCEEEEEcCC
Confidence 445556678888999999975321 1111 233444433 358998886533
No 140
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=29.89 E-value=1.5e+02 Score=23.68 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=37.7
Q ss_pred eEEEEeeCC-chHH--HHHHHHHhcCCCEEEEeeCCCCccc-ccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 136 YKIHIVKDH-DMRE--RLCLEIERLSLSAVIMGSRGFGAEK-RGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 136 v~~~~~~g~-~~~~--~I~~~a~~~~~dlIV~G~~~~~~~~-~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
+.+....|. +..+ .+.+.+++.++|.+++......... +. ++ .--..|...++.||+++..+
T Consensus 70 ~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~---l~-~~f~~ia~a~~lPiilYn~P 135 (289)
T 2yxg_A 70 VQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEG---LR-KHFGKVAESINLPIVLYNVP 135 (289)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHH---HH-HHHHHHHHHCSSCEEEEECH
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHH---HH-HHHHHHHHhcCCCEEEEeCc
Confidence 334444443 3344 4567788999999988876543221 11 22 23345777889999999753
No 141
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=29.78 E-value=50 Score=22.44 Aligned_cols=53 Identities=6% Similarity=-0.189 Sum_probs=32.0
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
++++++.-..-.. .+ ... .++|+|++|.+-+..+ ...++.+....+||.+++.
T Consensus 34 gi~v~i~a~~~~~-~~---~~~--~~~DvvLLgPQV~y~~---------~~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 34 EVRVIANSGAYGA-HY---DIM--GVYDLIILAPQVRSYY---------REMKVDAERLGIQIVATRG 86 (108)
T ss_dssp TCSEEEEEEETTS-CT---TTG--GGCSEEEECGGGGGGH---------HHHHHHHTTTTCEEEECCH
T ss_pred CCceEEEEcchHH-HH---hhc--cCCCEEEEChHHHHHH---------HHHHHHhhhcCCcEEEeCH
Confidence 7777765533222 22 222 3499999998754322 2334456666899999875
No 142
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=29.71 E-value=1.4e+02 Score=23.88 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCccc-ccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEK-RGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~-~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.+.+++.++|.+++-........ +. ++ .--..|...++.||+++..+
T Consensus 87 ~la~~a~~~Gadavlv~~P~y~~~s~~~---l~-~~f~~ia~a~~lPiilYn~P 136 (292)
T 2ojp_A 87 SLTQRFNDSGIVGCLTVTPYYNRPSQEG---LY-QHFKAIAEHTDLPQILYNVP 136 (292)
T ss_dssp HHHHHTTTSSCSEEEEECCCSSCCCHHH---HH-HHHHHHHTTCSSCEEEECCH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHH---HH-HHHHHHHHhcCCCEEEEeCc
Confidence 3466678899999988876543221 11 22 23345777889999999753
No 143
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=29.59 E-value=93 Score=22.55 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=22.2
Q ss_pred hhhCCcceEEEEeeCCchHHHHHHHHHh----cCCCEEEEe
Q 026810 129 LKEAGFPYKIHIVKDHDMRERLCLEIER----LSLSAVIMG 165 (232)
Q Consensus 129 ~~~~~~~v~~~~~~g~~~~~~I~~~a~~----~~~dlIV~G 165 (232)
+...|..+.......++ .+.|.+..++ .++|+||.-
T Consensus 30 l~~~G~~v~~~~iv~Dd-~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 30 LAGGPFEVAAYELVPDE-PPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HTTSSEEEEEEEEECSC-HHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHCCCeEeEEEEcCCC-HHHHHHHHHHHHhcCCCCEEEEc
Confidence 34448888877778777 4444333322 269988764
No 144
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=29.56 E-value=2.2e+02 Score=22.76 Aligned_cols=62 Identities=8% Similarity=-0.049 Sum_probs=36.7
Q ss_pred eEEEEeeCC-chHH--HHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 136 YKIHIVKDH-DMRE--RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 136 v~~~~~~g~-~~~~--~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
+.+....|. +..+ .+.+.+++.++|.+++..........- +++ .--..|...++.||+++..
T Consensus 74 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~--~l~-~~f~~va~a~~lPiilYn~ 138 (293)
T 1f6k_A 74 IALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFP--EIK-HYYDTIIAETGSNMIVYSI 138 (293)
T ss_dssp SEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHH--HHH-HHHHHHHHHHCCCEEEEEC
T ss_pred CeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHH--HHH-HHHHHHHHhCCCCEEEEEC
Confidence 334444443 3343 456778889999999887654322111 012 2333567777899999974
No 145
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=29.54 E-value=18 Score=28.00 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=31.0
Q ss_pred CCCEEEEeeCCCCcccccCCCccCchhHH---HhccCCCcEEEEcCCCC
Q 026810 158 SLSAVIMGSRGFGAEKRGSDGKLGSVSDY---CVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 158 ~~dlIV~G~~~~~~~~~~~~~~~gs~~~~---vl~~~~~PVliVp~~~~ 203 (232)
.+|++|+..-..+.+.++..|+-.+.... ++...++|++++|..-+
T Consensus 94 ~aD~mvIaPaSanTlakiA~GiaDnLltraadv~Lk~~~plvl~Paem~ 142 (209)
T 3zqu_A 94 APNAMVICPCSTGTLSAVATGACNNLIERAADVALKERRPLVLVPREAP 142 (209)
T ss_dssp CCCEEEEEEECHHHHHHHHHTCCCSHHHHHHHHHHHHTCCEEEEECCSS
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCcEEEEEcccc
Confidence 48999998888777777633333333333 44446899999998444
No 146
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=29.52 E-value=54 Score=27.71 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=35.5
Q ss_pred hhCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCC---CCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 130 KEAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRG---FGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 130 ~~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~---~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
...|+++.... +.-+ ....++.++|+|++|..+ .|.+... .-.....-+.++.++||+++-+
T Consensus 230 ~~~GIpvtlI~---Dsa~---~~~M~~~~Vd~ViVGAD~V~aNG~v~NK---iGTy~lAl~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 230 MQGGIDVTLIT---DSMA---AHTMKEKQISAVIVGADRIAKNGDTANK---IGTYGLAILANAFDIPFFVAAP 294 (374)
T ss_dssp HTTTCEEEEEC---GGGH---HHHHHHTTCCEEEECCSEEETTCCEEEE---TTHHHHHHHHHHTTCCEEEECC
T ss_pred HHcCCCEEEEe---hhHH---HHHhhhcCCCEEEECccEEecCCCEEec---ccHHHHHHHHHHcCCCEEEecc
Confidence 33477765444 2212 233455679999999975 2233222 2223333455668899999855
No 147
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=29.42 E-value=2e+02 Score=22.27 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=38.3
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
+.|..+.+.......-...+++.....++|-||+...... ...-..+....+||+++-..
T Consensus 38 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-----------~~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 38 KRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPE-----------DFRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp HTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSS-----------CHHHHHHHHTTCCEEEESCC
T ss_pred HCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCC-----------hHHHHHHHhCCCCEEEECCC
Confidence 3366666655543223566778888889999998754321 12223456678999999764
No 148
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=29.22 E-value=2.1e+02 Score=22.62 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=35.5
Q ss_pred CCcceEEEEeeCCch-HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 132 AGFPYKIHIVKDHDM-RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~-~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.|..+.+....++.- ...+++.....++|-||+...... .......+...++||+++....
T Consensus 92 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~----------~~~~~~~~~~~~iPvV~~~~~~ 153 (338)
T 3dbi_A 92 KGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS----------VDEIDDIIDAHSQPIMVLNRRL 153 (338)
T ss_dssp TTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC----------HHHHHHHHHHCSSCEEEESSCC
T ss_pred CCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC----------hHHHHHHHHcCCCCEEEEcCCC
Confidence 366665555443321 223556666789999998653211 1123445667789999986543
No 149
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=29.21 E-value=86 Score=22.89 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=21.1
Q ss_pred CcceEEEEeeCCchHHHHHHHHHh----cCCCEEEEe
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIER----LSLSAVIMG 165 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~----~~~dlIV~G 165 (232)
|+.+......+++ .+.|.+..++ .++|+||.-
T Consensus 44 G~~v~~~~iv~Dd-~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 44 GHKVTSYEIVKDD-KESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp TCEEEEEEEECSS-HHHHHHHHHHHHTCTTCSEEEEE
T ss_pred CCeEeEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEEc
Confidence 7888888888887 4444443332 368988775
No 150
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=28.93 E-value=1.7e+02 Score=24.24 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=33.2
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCC---CcccccCCCccCchh-HHHhccCCCcEEEEcC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF---GAEKRGSDGKLGSVS-DYCVHHCVCPVVVVRY 200 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~---~~~~~~~~~~~gs~~-~~vl~~~~~PVliVp~ 200 (232)
.|+++....-.. ++..+ ..+|+|++|..+- |.+... .|... .-+.++.++||+++-+
T Consensus 191 ~GI~vtlI~Dsa--~~~~M------~~Vd~VivGAd~V~anG~v~NK----iGT~~lAl~Ak~~~vPfyV~a~ 251 (338)
T 3a11_A 191 YGIPVIYVVDSA--ARHYM------KMTDKVVMGADSITVNGAVINK----IGTALIALTAKEHRVWTMIAAE 251 (338)
T ss_dssp TTCCEEEECGGG--TTTTG------GGCSEEEECCSEECTTSCEEEE----TTHHHHHHHHHHTTCEEEEECC
T ss_pred CCCCEEEEehHH--HHHHH------HhCCEEEECccEEecCCCEeec----ccHHHHHHHHHHcCCCEEEecc
Confidence 478766554322 12222 4599999999752 223222 34333 3445668899999965
No 151
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=28.86 E-value=55 Score=27.33 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=35.0
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCC---CcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF---GAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~---~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
..|+++.... +. .+....++.++|+|++|..+- |.+... .-.....-+.++.++||+++-+
T Consensus 206 ~~GI~vtlI~---Ds---a~~~~M~~~~Vd~VivGAd~V~aNG~v~NK---iGT~~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 206 KDGIEVYVIT---DN---MAGWLMKRGLIDAVVVGADRIALNGDTANK---IGTYSLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp TTTCEEEEEC---GG---GHHHHHHTTCCSEEEECCSEEETTSCEEEE---TTHHHHHHHHHHTTCCEEEECC
T ss_pred hCCCCEEEEe---hh---HHHHHhhcCCCCEEEECccEEecCCCEEec---ccHHHHHHHHHHcCCCEEEecc
Confidence 3477765444 22 122334556799999999752 223222 2223333455668899999954
No 152
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=28.83 E-value=51 Score=27.97 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=36.1
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCC---CcccccCCCccCchh-HHHhccCCCcEEEEcCC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF---GAEKRGSDGKLGSVS-DYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~---~~~~~~~~~~~gs~~-~~vl~~~~~PVliVp~~ 201 (232)
..|+++.... +.-+ ....++.++|+|++|..+- |.+... .|... .-+.++.++||+++-+.
T Consensus 235 ~~GIpvtlI~---Dsa~---~~~M~~~~Vd~ViVGAD~V~aNG~v~NK----iGTy~lAl~Ak~~~vPfyV~ap~ 299 (383)
T 2a0u_A 235 QEDIPCTLIC---DGAA---SSLMLNRKIDAVVVGADRICQNGDTANK----IGTYNLAVSAKFHGVKLYVAAPT 299 (383)
T ss_dssp HTTCCEEEEC---GGGH---HHHHHHSCCCEEEECCSEECTTCCEEEE----TTHHHHHHHHHHTTCCEEEECCG
T ss_pred HcCCCEEEEe---hhHH---HHHhhcCCCCEEEECccEEecCCCEeec----ccHHHHHHHHHHcCCCEEEeCCc
Confidence 3488866554 2212 2334556799999999752 223222 34333 34456688999999653
No 153
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=28.58 E-value=1.1e+02 Score=22.37 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=24.2
Q ss_pred hhCCcceEEEEeeCCchHHHHHHHH----HhcCCCEEEEee
Q 026810 130 KEAGFPYKIHIVKDHDMRERLCLEI----ERLSLSAVIMGS 166 (232)
Q Consensus 130 ~~~~~~v~~~~~~g~~~~~~I~~~a----~~~~~dlIV~G~ 166 (232)
...|+.+......+++ .+.|.+.. ...++|+|+...
T Consensus 50 ~~~G~~v~~~~iV~Dd-~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 50 IENGHKIIGYSLVPDD-KIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp HHTTCEEEEEEEECSC-HHHHHHHHHHHHTCTTCCEEEEES
T ss_pred HHCCCEEEEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEecC
Confidence 3348999999999888 44454433 235689888753
No 154
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=28.58 E-value=1.5e+02 Score=23.86 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.+.+++.++|.+++..........- +++ .--..|...++.||+++..+
T Consensus 86 ~la~~A~~~Gadavlv~~P~y~~~s~~--~l~-~~f~~va~a~~lPiilYn~P 135 (297)
T 2rfg_A 86 RYAQHAQQAGADAVLCVAGYYNRPSQE--GLY-QHFKMVHDAIDIPIIVYNIP 135 (297)
T ss_dssp HHHHHHHHHTCSEEEECCCTTTCCCHH--HHH-HHHHHHHHHCSSCEEEEECH
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHH--HHH-HHHHHHHHhcCCCEEEEeCc
Confidence 446778899999999987654322111 022 23345777889999999753
No 155
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=28.08 E-value=3e+02 Score=23.91 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=28.8
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
++++|++.+-.+|..++..+.+. +.+++.+|+-.
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~ 243 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDH 243 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEEC
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeC
Confidence 68999999999999888777664 68999999864
No 156
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=27.75 E-value=1.5e+02 Score=23.72 Aligned_cols=49 Identities=8% Similarity=0.207 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCccc-ccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEK-RGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~-~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.+.+++.++|.+++......... +. ++ .--..|...++.||+++..+
T Consensus 87 ~la~~a~~~Gadavlv~~P~y~~~s~~~---l~-~~f~~ia~a~~lPiilYn~P 136 (291)
T 3a5f_A 87 AMSKWAESIGVDGLLVITPYYNKTTQKG---LV-KHFKAVSDAVSTPIIIYNVP 136 (291)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHH---HH-HHC-CTGGGCCSCEEEEECH
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHH---HH-HHHHHHHHhcCCCEEEEeCc
Confidence 4567788999999998876543211 11 11 11224566778999999753
No 157
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=27.05 E-value=1.5e+02 Score=24.17 Aligned_cols=52 Identities=15% Similarity=0.055 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
+-.+.+.+++.++|.+++...-......- -+-.--..|...++.||+++..+
T Consensus 108 ai~la~~A~~~Gadavlv~~P~y~~~s~~---~l~~~f~~va~a~~lPiilYn~P 159 (315)
T 3na8_A 108 TVRRAQFAESLGAEAVMVLPISYWKLNEA---EVFQHYRAVGEAIGVPVMLYNNP 159 (315)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCSSCCCHH---HHHHHHHHHHHHCSSCEEEEECH
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCCHH---HHHHHHHHHHHhCCCcEEEEeCc
Confidence 33556778899999999987654332211 11123456777889999999753
No 158
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=26.99 E-value=87 Score=23.57 Aligned_cols=60 Identities=12% Similarity=-0.005 Sum_probs=35.8
Q ss_pred EEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccC---CCcEEEEcCC
Q 026810 137 KIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHC---VCPVVVVRYP 201 (232)
Q Consensus 137 ~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~---~~PVliVp~~ 201 (232)
++...-.+.+.+.+++.+++.++|+|.+.......... +..+.+.+=+.. ++||++--..
T Consensus 118 ~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~-----~~~~i~~l~~~~~~~~~~v~vGG~~ 180 (210)
T 1y80_A 118 TVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMN-----MKSTIDALIAAGLRDRVKVIVGGAP 180 (210)
T ss_dssp EEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHH-----HHHHHHHHHHTTCGGGCEEEEESTT
T ss_pred EEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH-----HHHHHHHHHhcCCCCCCeEEEECCC
Confidence 34433334569999999999999999998754332222 122333332232 2788776543
No 159
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=26.48 E-value=2.2e+02 Score=23.09 Aligned_cols=51 Identities=8% Similarity=0.037 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 148 ERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 148 ~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
-.+.+.+++.++|.+++...-......- -+-.--+.|...++.||+++..+
T Consensus 108 i~la~~A~~~Gadavlv~~P~y~~~s~~---~l~~~f~~va~a~~lPiilYn~P 158 (314)
T 3qze_A 108 VALTEAAKSGGADACLLVTPYYNKPTQE---GMYQHFRHIAEAVAIPQILYNVP 158 (314)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHH---HHHHHHHHHHHHSCSCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHH---HHHHHHHHHHHhcCCCEEEEeCc
Confidence 3456788899999999987654322111 11123446777889999999753
No 160
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=26.38 E-value=1.8e+02 Score=21.49 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=21.6
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHh--cCCCEEEEe
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIER--LSLSAVIMG 165 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~--~~~dlIV~G 165 (232)
..|+.+......+++ .+.|.+..++ ..+|+||.-
T Consensus 34 ~~G~~v~~~~iv~Dd-~~~I~~~l~~a~~~~DlVitt 69 (172)
T 3kbq_A 34 YHGYQVRRGFVVMDD-LDEIGWAFRVALEVSDLVVSS 69 (172)
T ss_dssp HTTCEEEEEEEECSC-HHHHHHHHHHHHHHCSEEEEE
T ss_pred HCCCEEEEEEEeCCC-HHHHHHHHHHHHhcCCEEEEc
Confidence 348888888888887 4444433322 138988865
No 161
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=25.95 E-value=2.2e+02 Score=22.25 Aligned_cols=65 Identities=8% Similarity=-0.107 Sum_probs=38.9
Q ss_pred CCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc-CCCcEEEEcCCCC
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVRYPDD 203 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~-~~~PVliVp~~~~ 203 (232)
.|.++...-.. - +.+.+++.+++.++|+|.+..........+ ..+.+.+=.. .++||++--....
T Consensus 150 ~G~~Vi~LG~~-v-p~e~l~~~~~~~~~d~V~lS~l~~~~~~~~-----~~~i~~l~~~~~~~~v~vGG~~~~ 215 (258)
T 2i2x_B 150 NGYNVVDLGRD-V-PAEEVLAAVQKEKPIMLTGTALMTTTMYAF-----KEVNDMLLENGIKIPFACGGGAVN 215 (258)
T ss_dssp TTCEEEEEEEE-C-CSHHHHHHHHHHCCSEEEEECCCTTTTTHH-----HHHHHHHHTTTCCCCEEEESTTCC
T ss_pred CCCEEEECCCC-C-CHHHHHHHHHHcCCCEEEEEeeccCCHHHH-----HHHHHHHHhcCCCCcEEEECccCC
Confidence 36554433332 3 588899999999999999987543333221 2333333222 3488888765443
No 162
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=25.73 E-value=2.7e+02 Score=22.73 Aligned_cols=36 Identities=3% Similarity=-0.206 Sum_probs=21.8
Q ss_pred EEEEEecCChh--HHHHHHHHHHHhC-CCCCEEEEEEEe
Q 026810 43 KIGVAVDLSDE--SAFAVRWAVHHYL-RPGDAVILVHVS 78 (232)
Q Consensus 43 ~ILv~vD~s~~--s~~al~~A~~la~-~~~~~l~ll~v~ 78 (232)
++++|-.+... ....++...+++. ....++.++|..
T Consensus 227 ~~i~pgHg~~~~~~~~~~~~~~~~~~~~~~~k~~i~~~S 265 (404)
T 2ohh_A 227 QMIAPSHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDT 265 (404)
T ss_dssp SEEECSSSCBBSSHHHHHHHHHHHHTTCCCSEEEEEECC
T ss_pred cEEecCCCccccCHHHHHHHHHHHhccCCCCcEEEEEEC
Confidence 56677665532 4556666666654 355677777754
No 163
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=25.62 E-value=1.6e+02 Score=20.07 Aligned_cols=48 Identities=6% Similarity=-0.057 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc---CCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~---~~~PVliVp~~ 201 (232)
.+..+...++..+|+|++...-.+ ..++ .....+-.. ..+||+++-..
T Consensus 40 ~~~al~~l~~~~~dlii~D~~l~~-~~g~------~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 40 GREAVRFLSLTRPDLIISDVLMPE-MDGY------ALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHHHHHTTCCCSEEEEESCCSS-SCHH------HHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC-CCHH------HHHHHHHhCCCcCCCCEEEEECC
Confidence 455556777889999999976322 2222 234444333 46899888643
No 164
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=25.56 E-value=2.2e+02 Score=21.57 Aligned_cols=79 Identities=9% Similarity=0.043 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCEEEEeeCCC-------------------CcccccCCCccCchhHHHhcc---CCCcEEEEcCCCCCC
Q 026810 148 ERLCLEIERLSLSAVIMGSRGF-------------------GAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRYPDDKD 205 (232)
Q Consensus 148 ~~I~~~a~~~~~dlIV~G~~~~-------------------~~~~~~~~~~~gs~~~~vl~~---~~~PVliVp~~~~~~ 205 (232)
..+++..++.++|+||+...++ +.+-++ +.....-+.++.. +.|.|+.|- ...+
T Consensus 72 ~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSLLP~y--rG~~pi~~Ai~~G~~~tGvTvh~v~--~~~D 147 (212)
T 3av3_A 72 SEILRELKGRQIDWIALAGYMRLIGPTLLSAYEGKIVNIHPSLLPAF--PGKDAIGQAYRAGVSETGVTVHYVD--EGMD 147 (212)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSCCCHHHHHHTTTCEEEEESSCTTSS--CSTTHHHHHHHHTCSEEEEEEEECC--SSSS
T ss_pred HHHHHHHHhcCCCEEEEchhhhhCCHHHHhhhcCCEEEEecCcCCCC--CCcCHHHHHHHcCCCeEEEEEEEEC--CCCC
Confidence 4677888889999999987642 222222 0111233344443 447777664 4556
Q ss_pred CCCceEEecCCCCCCC-chHHhhhcc
Q 026810 206 DGEPLVKVKEPEKDDE-DDHVDRKLK 230 (232)
Q Consensus 206 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 230 (232)
.+.++.....+=..++ ...|.+++.
T Consensus 148 ~G~Ii~Q~~v~I~~~dt~~~L~~r~~ 173 (212)
T 3av3_A 148 TGPVIAQRVVPIVPGEPIEALEERIH 173 (212)
T ss_dssp CSCEEEEEEEECCTTCCHHHHHHHHH
T ss_pred CCCEEEEEEEecCCCCCHHHHHHHHH
Confidence 6777666655443333 333555543
No 165
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=25.54 E-value=1.9e+02 Score=20.86 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEc
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVR 199 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp 199 (232)
....+...+...+|+|++...-.+ ..++ .....+-...+.||+++-
T Consensus 47 ~~~al~~~~~~~~dlvi~D~~~p~-~~g~------~~~~~l~~~~~~pii~lt 92 (205)
T 1s8n_A 47 GQEAVELAELHKPDLVIMDVKMPR-RDGI------DAASEIASKRIAPIVVLT 92 (205)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSS-SCHH------HHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHhhcCCCEEEEeCCCCC-CChH------HHHHHHHhcCCCCEEEEe
Confidence 344445667778999999976322 2222 344555555567988884
No 166
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=25.54 E-value=1.5e+02 Score=19.70 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
....+.......+|+|++...-. ...++ ....++-....+||+++-.
T Consensus 37 ~~~al~~~~~~~~dlvllD~~l~-~~~g~------~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 37 CEEAIGKIFSNKYDLIFLEIILS-DGDGW------TLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp HHHHHHHHHHCCCSEEEEESEET-TEEHH------HHHHHHHTTCCCCEEEEES
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC-CCCHH------HHHHHHccCCCCCEEEEEc
Confidence 44455666778899999987532 12222 2344444334789988854
No 167
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=25.52 E-value=1.7e+02 Score=23.31 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCccc-ccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEK-RGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~-~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.+.+++.++|.+++...-..... +. ++ .--..|...++.||+++..+
T Consensus 87 ~la~~a~~~Gadavlv~~P~y~~~~~~~---l~-~~f~~ia~a~~lPiilYn~P 136 (291)
T 3tak_A 87 ELTKAAKDLGADAALLVTPYYNKPTQEG---LY-QHYKAIAEAVELPLILYNVP 136 (291)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHH---HH-HHHHHHHHHCCSCEEEEECH
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHH---HH-HHHHHHHHhcCCCEEEEecc
Confidence 4567788999999999876543221 11 22 23356777889999999753
No 168
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=25.16 E-value=2.3e+02 Score=21.54 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
....+.......+|+|++...-. ...++ ....++-....+||+++-..
T Consensus 70 ~~~al~~~~~~~~DlvllD~~lp-~~~G~------~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 70 AMNGLIKAREDHPDLILLDLGLP-DFDGG------DVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp HHHHHHHHHHSCCSEEEEECCSC-HHHHH------HHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEcCCCC-CCCHH------HHHHHHHcCCCCCEEEEECC
Confidence 44455666778899999997532 22222 34455545556899988653
No 169
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=25.13 E-value=1.1e+02 Score=25.79 Aligned_cols=63 Identities=8% Similarity=0.005 Sum_probs=37.3
Q ss_pred hhhhCCcceEEEEeeCCch---HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 128 PLKEAGFPYKIHIVKDHDM---RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 128 ~~~~~~~~v~~~~~~g~~~---~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.. ++.+.+....+++. .+.+.+.+++.++|+| +|-.|.+ ...++.-+.....+|++.||..
T Consensus 74 ~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~I-IavGGGs---------~~D~AK~iA~~~~~p~i~IPTT 139 (387)
T 3uhj_A 74 SCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDIL-VGVGGGK---------TADTAKIVAIDTGARIVIAPTI 139 (387)
T ss_dssp -----CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEE-EEESSHH---------HHHHHHHHHHHTTCEEEECCSS
T ss_pred HHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEE-EEeCCcH---------HHHHHHHHHHhcCCCEEEecCc
Confidence 3444 66664455555543 4566677788899975 4443321 2345555555678999999985
No 170
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=25.07 E-value=55 Score=26.56 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEE-Ec
Q 026810 150 LCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVV-VR 199 (232)
Q Consensus 150 I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVli-Vp 199 (232)
+++.+.+.+.|.|++|+.+-..+... +..+...|=++.+.||++ .|
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~----~~~~v~~ik~~~~lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESH----MEPYVAAVKAATPLPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHH----HHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHH----HHHHHHHHHHhCCCCEEEECC
Confidence 56667788999999994333322332 234555555558999999 88
No 171
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=24.94 E-value=2.7e+02 Score=22.37 Aligned_cols=52 Identities=10% Similarity=0.094 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.-.+.+.+++.++|.+++..........- +++ .--..|...++.||+++..+
T Consensus 99 ai~la~~a~~~Gadavlv~~P~y~~~s~~--~l~-~~f~~va~a~~lPiilYn~P 150 (304)
T 3l21_A 99 SIRLAKACAAEGAHGLLVVTPYYSKPPQR--GLQ-AHFTAVADATELPMLLYDIP 150 (304)
T ss_dssp HHHHHHHHHHHTCSEEEEECCCSSCCCHH--HHH-HHHHHHHTSCSSCEEEEECH
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCHH--HHH-HHHHHHHHhcCCCEEEEeCc
Confidence 33456788899999999987654332111 022 23456788889999999753
No 172
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=24.89 E-value=1.3e+02 Score=21.91 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=20.9
Q ss_pred CCcceEEEEeeCCchHHHHHHHH----HhcCCCEEEEe
Q 026810 132 AGFPYKIHIVKDHDMRERLCLEI----ERLSLSAVIMG 165 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~~~~I~~~a----~~~~~dlIV~G 165 (232)
.|+.+......+++ .+.|.+.. ++.++|+||.-
T Consensus 40 ~G~~v~~~~iv~Dd-~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 40 AGHHVVDKAIVKEN-RYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp TTCEEEEEEEECSC-HHHHHHHHHHHHHSSSCCEEEEE
T ss_pred CCCeEeEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEeC
Confidence 38888887888877 44333333 32259988774
No 173
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=24.66 E-value=1.4e+02 Score=19.09 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
........+...+|+|++...-.+ ..++ .....+-....+|++++-.
T Consensus 35 ~~~~~~~~~~~~~dlvi~d~~l~~-~~g~------~~~~~l~~~~~~~ii~~s~ 81 (122)
T 1zgz_A 35 GAGLREIMQNQSVDLILLDINLPD-ENGL------MLTRALRERSTVGIILVTG 81 (122)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSS-SCHH------HHHHHHHTTCCCEEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC-CChH------HHHHHHHhcCCCCEEEEEC
Confidence 445556677788999999875322 2221 2344444445688888854
No 174
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=24.57 E-value=1.9e+02 Score=20.38 Aligned_cols=38 Identities=11% Similarity=0.144 Sum_probs=27.9
Q ss_pred hhCCcceEEEEee-CCchHHHHHHHHHhcCCCEEEEeeC
Q 026810 130 KEAGFPYKIHIVK-DHDMRERLCLEIERLSLSAVIMGSR 167 (232)
Q Consensus 130 ~~~~~~v~~~~~~-g~~~~~~I~~~a~~~~~dlIV~G~~ 167 (232)
...|+.+++.... +..+...|-+.....-.=+||+|.+
T Consensus 32 ~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~k 70 (130)
T 1v95_A 32 RDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQ 70 (130)
T ss_dssp HTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHH
T ss_pred HHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEech
Confidence 3348899887753 5667888887777766778888865
No 175
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=24.26 E-value=2.8e+02 Score=22.40 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.+.+++.++|.+++...-......- +++ .--..|...++.||+++..+
T Consensus 108 ~la~~A~~~Gadavlv~~P~y~~~~~~--~l~-~~f~~va~a~~lPiilYn~P 157 (315)
T 3si9_A 108 ELAKHAEKAGADAVLVVTPYYNRPNQR--GLY-THFSSIAKAISIPIIIYNIP 157 (315)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHH--HHH-HHHHHHHHHCSSCEEEEECH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHH--HHH-HHHHHHHHcCCCCEEEEeCc
Confidence 456788999999999987654322111 022 23346777889999999753
No 176
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=24.14 E-value=1.7e+02 Score=23.62 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=36.8
Q ss_pred eEEEEeeCC-chHH--HHHHHHHhcCCCEEEEeeCCCCccc-ccCCCccCchhHHHhccCC-CcEEEEcC
Q 026810 136 YKIHIVKDH-DMRE--RLCLEIERLSLSAVIMGSRGFGAEK-RGSDGKLGSVSDYCVHHCV-CPVVVVRY 200 (232)
Q Consensus 136 v~~~~~~g~-~~~~--~I~~~a~~~~~dlIV~G~~~~~~~~-~~~~~~~gs~~~~vl~~~~-~PVliVp~ 200 (232)
+.+....|. +..+ .+.+.+++.++|.+++-........ +. ++ .--..|...++ .||+++..
T Consensus 81 vpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~---l~-~~f~~va~a~~~lPiilYn~ 146 (303)
T 2wkj_A 81 IKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEE---HC-DHYRAIIDSADGLPMVVYNI 146 (303)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHH---HH-HHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHH---HH-HHHHHHHHhCCCCCEEEEeC
Confidence 334444443 3344 4467788999999988876543221 11 22 23345677778 99999974
No 177
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=24.14 E-value=1.5e+02 Score=19.22 Aligned_cols=47 Identities=9% Similarity=0.003 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc---CCCcEEEEcC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRY 200 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~---~~~PVliVp~ 200 (232)
....++..++..+|+|++...- ....++ ....++-.. ..+||+++-.
T Consensus 35 ~~~al~~l~~~~~dlvllD~~~-p~~~g~------~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 35 GQIALEKLSEFTPDLIVLXIMM-PVMDGF------TVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp HHHHHHHHTTBCCSEEEECSCC-SSSCHH------HHHHHHHTSTTTTTSCEEEEES
T ss_pred HHHHHHHHHhcCCCEEEEeccC-CCCcHH------HHHHHHHhcccccCCCEEEEec
Confidence 4445566778899999998653 222222 234444332 3589988864
No 178
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.85 E-value=1.6e+02 Score=19.45 Aligned_cols=48 Identities=6% Similarity=-0.103 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhc---cCCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH---HCVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~---~~~~PVliVp~~ 201 (232)
.+..+...+...+|+|++...-.+ ..++ ....++-. ...+||+++-..
T Consensus 40 ~~~a~~~l~~~~~dlii~d~~l~~-~~g~------~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 40 GGQCIDLLKKGFSGVVLLDIMMPG-MDGW------DTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp HHHHHHHHHTCCCEEEEEESCCSS-SCHH------HHHHHHHHTTCCTTEEEEEEECT
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC-CCHH------HHHHHHHhhcccCCCCEEEEECC
Confidence 455566777788999999976322 1111 24444443 346899988553
No 179
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=23.85 E-value=1.3e+02 Score=22.21 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=21.7
Q ss_pred hhCCcceEEEEeeCCchHHHHHHHH----HhcCCCEEEEe
Q 026810 130 KEAGFPYKIHIVKDHDMRERLCLEI----ERLSLSAVIMG 165 (232)
Q Consensus 130 ~~~~~~v~~~~~~g~~~~~~I~~~a----~~~~~dlIV~G 165 (232)
...|..+.......++ .+.|.+.. ++.++|+||.-
T Consensus 50 ~~~G~~v~~~~iv~Dd-~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 50 IENGHKIIGYSLVPDD-KIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHTTCEEEEEEEECSC-HHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHCCCEEEEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEEC
Confidence 3348888887777777 44444333 22258988864
No 180
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=23.82 E-value=2.2e+02 Score=20.90 Aligned_cols=35 Identities=11% Similarity=-0.151 Sum_probs=22.7
Q ss_pred cEEEEEecCCh----hHHHHHHHHHHHhCCCCCEEEEEEEe
Q 026810 42 RKIGVAVDLSD----ESAFAVRWAVHHYLRPGDAVILVHVS 78 (232)
Q Consensus 42 ~~ILv~vD~s~----~s~~al~~A~~la~~~~~~l~ll~v~ 78 (232)
++||+ +.+|+ .+...++++.+.+. .+.++.++.+.
T Consensus 3 ~kili-i~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~ 41 (192)
T 3fvw_A 3 KRILF-IVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYD 41 (192)
T ss_dssp CEEEE-EESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCS
T ss_pred CEEEE-EEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCc
Confidence 46666 44443 46677888888776 57777766654
No 181
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=23.72 E-value=1.8e+02 Score=24.45 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=22.3
Q ss_pred CCCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 39 LARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 39 ~~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
||+++||| +...+.+...++. |++.|-++++++...
T Consensus 4 m~~~kiLI-~g~g~~a~~i~~a----a~~~G~~~v~v~~~~ 39 (446)
T 3ouz_A 4 MEIKSILI-ANRGEIALRALRT----IKEMGKKAICVYSEA 39 (446)
T ss_dssp TCCCEEEE-CCCHHHHHHHHHH----HHHTTCEEEEEEEGG
T ss_pred cccceEEE-ECCCHHHHHHHHH----HHHcCCEEEEEEcCc
Confidence 46799999 4554444444433 444688888776554
No 182
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=23.70 E-value=1.6e+02 Score=25.94 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=28.4
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
++++|++.+-.+|..++..+.+. .|.+++++|+..
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~ 265 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDT 265 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECC
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEecc
Confidence 78999999999998888777664 356799999864
No 183
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=23.69 E-value=83 Score=26.27 Aligned_cols=21 Identities=10% Similarity=0.004 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCCEEE-EeeC
Q 026810 147 RERLCLEIERLSLSAVI-MGSR 167 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV-~G~~ 167 (232)
.+.+.+.+++.++|+|| +|..
T Consensus 77 v~~~~~~~~~~~~d~IIavGGG 98 (386)
T 1rrm_A 77 VKEGLGVFQNSGADYLIAIGGG 98 (386)
T ss_dssp HHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHHhcCcCEEEEeCCh
Confidence 56777888889999888 6643
No 184
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.50 E-value=2.7e+02 Score=21.78 Aligned_cols=44 Identities=7% Similarity=-0.077 Sum_probs=30.6
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCCCCCCCCCc-EEEEEecCChhHHHHHHHHHHHhCCC
Q 026810 12 HPHLPTIKIHNPSANTTTPAATPTPTSLARR-KIGVAVDLSDESAFAVRWAVHHYLRP 68 (232)
Q Consensus 12 ~~~~pvl~v~~~~~~~~~~~~~~~~~~~~~~-~ILv~vD~s~~s~~al~~A~~la~~~ 68 (232)
...+|++++-..... ... ...|.+|.......+.++.+......
T Consensus 82 ~~giPvV~~~~~~~~-------------~~~~~~~V~~D~~~~g~~a~~~l~~~~~~~ 126 (330)
T 3uug_A 82 EQGIKVIAYDRLIRN-------------SGDVSYYATFDNFQVGVLQATSITDKLGLK 126 (330)
T ss_dssp HTTCEEEEESSCCCS-------------CTTCCEEEEECHHHHHHHHHHHHHHHHTGG
T ss_pred HCCCCEEEECCCCCC-------------CCceeEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 457899888754332 112 23677898889999999988877654
No 185
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=23.46 E-value=1.6e+02 Score=19.24 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc-CCCcEEEEcCCC
Q 026810 150 LCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVRYPD 202 (232)
Q Consensus 150 I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~-~~~PVliVp~~~ 202 (232)
.+...++..+|+|++...-.+ ..++ ....++-.. ..+||+++-...
T Consensus 38 a~~~~~~~~~dlii~d~~l~~-~~g~------~~~~~l~~~~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 38 AVQRVETLKPDIVIIDVDIPG-VNGI------QVLETLRKRQYSGIIIIVSAKN 84 (134)
T ss_dssp HHHHHHHHCCSEEEEETTCSS-SCHH------HHHHHHHHTTCCSEEEEEECC-
T ss_pred HHHHHHhcCCCEEEEecCCCC-CChH------HHHHHHHhcCCCCeEEEEeCCC
Confidence 334556678999999976422 2222 234444443 358888886533
No 186
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=23.37 E-value=44 Score=28.00 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=35.2
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCC--CcccccCCCccCchh-HHHhccCCCcEEEEcC
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGF--GAEKRGSDGKLGSVS-DYCVHHCVCPVVVVRY 200 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~--~~~~~~~~~~~gs~~-~~vl~~~~~PVliVp~ 200 (232)
..|+++.... +. ++....++.++|+|++|..+- +++.. -.|... .-+.++.++||+++-+
T Consensus 204 ~~GI~vtlI~---Ds---a~~~~M~~~~Vd~VivGAd~V~aNGv~N----KiGT~~lAl~Ak~~~vPfyV~a~ 266 (351)
T 1t5o_A 204 EDGIDVTLIT---DS---MVGIVMQKGMVDKVIVGADRIVRDAVFN----KIGTYTVSVVAKHHNIPFYVAAP 266 (351)
T ss_dssp HTTCCEEEEC---GG---GHHHHHHTTCCSEEEECCSEEETTEEEE----ETTHHHHHHHHHHTTCCEEEECC
T ss_pred hCCCCEEEEe---hh---HHHHHhhcCCCCEEEECccchhhcCccc----ccCHHHHHHHHHHcCCCEEEeCc
Confidence 3477766544 22 122334556799999999752 11322 234333 3445568899999955
No 187
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=23.05 E-value=1.5e+02 Score=23.16 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC-CCC-CCCCceEEecCCCCCCCc
Q 026810 148 ERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP-DDK-DDGEPLVKVKEPEKDDED 222 (232)
Q Consensus 148 ~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~-~~~-~~~~~~~~~~~~~~~~~~ 222 (232)
..+++...+.++|+|.+|-...-..... + ...+++ +..+.|+++.+.- ..- .+-.-+..-+-+.++.+.
T Consensus 23 ~~~~~~l~~~GaD~IelG~S~g~t~~~~----~-~~v~~i-r~~~~Pivl~~y~~n~i~~gvDg~iipdLp~ee~~~ 93 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGTQNVTYEKA----R-TLIEKV-SQYGLPIVVEPSDPSNVVYDVDYLFVPTVLNSADGD 93 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCCTTCCHHHH----H-HHHHHH-TTSCCCEEECCSSCCCCCCCSSEEEEEEETTBSBGG
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHH----H-HHHHHh-cCCCCCEEEecCCcchhhcCCCEEEEcccCCCCCHH
Confidence 3566777888999999997422223222 2 344444 3368999999986 333 233334444455544443
No 188
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=22.78 E-value=2.8e+02 Score=21.79 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
....+...++..+|+|++-..-.+...++ .....|-....+||+++-..
T Consensus 194 g~eAl~~~~~~~~dlvl~D~~MPd~mdG~------e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 194 RGEALEAVTRRTPGLVLADIQLADGSSGI------DAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp HHHHHHHHHHCCCSEEEEESCCTTSCCTT------TTTHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCCCCCHH------HHHHHHHhcCCCCEEEEeCC
Confidence 33444566778899999997643123333 23343433348999999653
No 189
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=22.63 E-value=1.7e+02 Score=19.12 Aligned_cols=48 Identities=10% Similarity=-0.107 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc---CCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~---~~~PVliVp~~ 201 (232)
.+..+...++..+|+|++...-.+ ..++ ....++-.. ..+||+++-..
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~~l~~-~~g~------~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 36 GASGLQQALAHPPDVLISDVNMDG-MDGY------ALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSS-SCHH------HHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC-CCHH------HHHHHHHhCCccCCCCEEEEeCC
Confidence 444556677789999999976322 2222 234444442 36899998653
No 190
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=22.57 E-value=1.8e+02 Score=19.53 Aligned_cols=48 Identities=17% Similarity=0.025 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhc-----cCCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH-----HCVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~-----~~~~PVliVp~~ 201 (232)
.+..++..+...+|+|++...-. ...++ ....++-. ...+||+++-..
T Consensus 47 ~~~al~~~~~~~~dlvl~D~~mp-~~~g~------~~~~~lr~~~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 47 AEQVLDAMAEEDYDAVIVDLHMP-GMNGL------DMLKQLRVMQASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCS-SSCHH------HHHHHHHHHHHTTCCCCCEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCC-CCCHH------HHHHHHHhchhccCCCCeEEEEeCC
Confidence 45556667788999999987632 22221 23333321 134789888653
No 191
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=22.38 E-value=2.1e+02 Score=22.90 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCccc-ccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEK-RGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~-~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.+.+++.++|.+++......... +. ++ .--+.|...++.||+++..+
T Consensus 88 ~la~~a~~~Gadavlv~~P~y~~~~~~~---l~-~~f~~ia~a~~lPiilYn~P 137 (292)
T 3daq_A 88 QASIQAKALGADAIMLITPYYNKTNQRG---LV-KHFEAIADAVKLPVVLYNVP 137 (292)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHH---HH-HHHHHHHHHHCSCEEEEECH
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCHHH---HH-HHHHHHHHhCCCCEEEEecc
Confidence 4567788899999988876443221 11 22 23345677779999999753
No 192
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=22.37 E-value=1.7e+02 Score=21.89 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=22.4
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHh---cCCCEEEEe
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIER---LSLSAVIMG 165 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~---~~~dlIV~G 165 (232)
..|..+.......++ .+.|.+..++ .++|+||.-
T Consensus 60 ~~G~~v~~~~iv~Dd-~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 60 EAGFVVDGVVAVEAD-EVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp HTTEEEEEEEEECSC-HHHHHHHHHHHHHTTCSEEEEE
T ss_pred HCCCEEEEEEEeCCC-HHHHHHHHHHHHhCCCCEEEEC
Confidence 348888888888887 4545444332 469988865
No 193
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=22.04 E-value=1.8e+02 Score=19.26 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhcc---CCCcEEEEcCC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~---~~~PVliVp~~ 201 (232)
....+...++..+|+|++...-. ...++ ....++-.. ..+||+++-..
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~-~~~g~------~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDII-GENSP------NLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC-------------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCC-CCcHH------HHHHHHHcCcccCCCCEEEEecC
Confidence 44455666777899999997532 22222 345555444 46899988653
No 194
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=21.70 E-value=3.3e+02 Score=22.21 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=21.2
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEeeCCCC
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGSRGFG 170 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~~~~~ 170 (232)
++.++.......+ ...+..... ++|+||+|+...+
T Consensus 281 g~~v~~~~~~~~~-~~~~~~~~~--~~d~ii~gsp~~~ 315 (402)
T 1e5d_A 281 GCTVKLMWCKACH-HSQIMSEIS--DAGAVIVGSPTHN 315 (402)
T ss_dssp TCEEEEEETTTSC-HHHHHHHHH--TCSEEEEECCCBT
T ss_pred CCeEEEEECCCCC-HHHHHHHHH--HCCEEEEECCccC
Confidence 5556555554444 444544444 4999999986544
No 195
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=21.60 E-value=2.5e+02 Score=21.49 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=22.8
Q ss_pred CcceEEEEeeC-CchHHHHHHHHHhcCCCEEEEeeCCC
Q 026810 133 GFPYKIHIVKD-HDMRERLCLEIERLSLSAVIMGSRGF 169 (232)
Q Consensus 133 ~~~v~~~~~~g-~~~~~~I~~~a~~~~~dlIV~G~~~~ 169 (232)
+..++..-... .+ .....+..++ +|.||++..-.
T Consensus 60 g~ev~~~dL~~~~D-v~~~~~~l~~--aD~iv~~~P~y 94 (218)
T 3rpe_A 60 GHQVKITTVDQGYD-IESEIENYLW--ADTIIYQMPAW 94 (218)
T ss_dssp TCCEEEEEGGGCCC-HHHHHHHHHH--CSEEEEEEECB
T ss_pred CCEEEEEECCCccC-HHHHHHHHHh--CCEEEEECChH
Confidence 66777666653 34 4555566666 99999998653
No 196
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=21.49 E-value=96 Score=24.16 Aligned_cols=47 Identities=15% Similarity=-0.007 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCC
Q 026810 150 LCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPD 202 (232)
Q Consensus 150 I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~ 202 (232)
.++.+.+.+.|+|.+|....-..... -.+.+.+= ..+.||++.|...
T Consensus 23 ~~~~~~~~GtD~i~vGGs~gvt~~~~-----~~~v~~ik-~~~~Pvvlfp~~~ 69 (228)
T 3vzx_A 23 QLEILCESGTDAVIIGGSDGVTEDNV-----LRMMSKVR-RFLVPCVLEVSAI 69 (228)
T ss_dssp HHHHHHTSSCSEEEECCCSCCCHHHH-----HHHHHHHT-TSSSCEEEECSCG
T ss_pred HHHHHHHcCCCEEEECCcCCCCHHHH-----HHHHHHhh-ccCCCEEEeCCCH
Confidence 44455688999999998532222222 23444443 3899999999753
No 197
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=21.45 E-value=1.2e+02 Score=21.92 Aligned_cols=34 Identities=9% Similarity=0.122 Sum_probs=20.7
Q ss_pred hCCcceEEEEeeCCchHHHHHHHHHh---cCCCEEEEe
Q 026810 131 EAGFPYKIHIVKDHDMRERLCLEIER---LSLSAVIMG 165 (232)
Q Consensus 131 ~~~~~v~~~~~~g~~~~~~I~~~a~~---~~~dlIV~G 165 (232)
..|+.+......+++ .+.|.+..++ .++|+||.-
T Consensus 40 ~~G~~v~~~~iv~Dd-~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 40 DYSYELISEVVVPEG-YDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp -CEEEEEEEEEECSS-HHHHHHHHHHHHHTTCSEEEEE
T ss_pred HCCCEEeEEEEeCCC-HHHHHHHHHHHHhCCCCEEEEC
Confidence 347777777777777 4444433332 259988765
No 198
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.43 E-value=1.8e+02 Score=18.99 Aligned_cols=48 Identities=10% Similarity=-0.031 Sum_probs=28.0
Q ss_pred HHHHHHHHHh-------cCCCEEEEeeCCCCcccccCCCccCchhHHHhcc---CCCcEEEEcCC
Q 026810 147 RERLCLEIER-------LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH---CVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~-------~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~---~~~PVliVp~~ 201 (232)
.+..+...++ ..+|+|++...-.+ ..++ ....++-.. ..+||+++-..
T Consensus 37 ~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~-~~g~------~~~~~l~~~~~~~~~pii~ls~~ 94 (140)
T 1k68_A 37 GMEAMAYLRQEGEYANASRPDLILLXLNLPK-KDGR------EVLAEIKSDPTLKRIPVVVLSTS 94 (140)
T ss_dssp HHHHHHHHTTCGGGGSCCCCSEEEECSSCSS-SCHH------HHHHHHHHSTTGGGSCEEEEESC
T ss_pred HHHHHHHHHcccccccCCCCcEEEEecCCCc-ccHH------HHHHHHHcCcccccccEEEEecC
Confidence 3444455555 78999999976322 2121 234444443 45899988643
No 199
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.40 E-value=1.8e+02 Score=19.15 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhc---cCCCcEEEEcC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVH---HCVCPVVVVRY 200 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~---~~~~PVliVp~ 200 (232)
.+..++..+...+|+|++...-. ...++ ....++-. ...+||+++-.
T Consensus 39 ~~~a~~~l~~~~~dlvi~d~~l~-~~~g~------~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 39 AAQALEQVARRPYAAMTVDLNLP-DQDGV------SLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCS-SSCHH------HHHHHHHTSGGGTTCEEEEECT
T ss_pred HHHHHHHHHhCCCCEEEEeCCCC-CCCHH------HHHHHHHhCcccCCCCEEEEec
Confidence 44555667788999999987532 22221 23444433 34689999865
No 200
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=21.33 E-value=1e+02 Score=25.56 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCc--ccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGA--EKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~--~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
+....++.+++ +|+||+|..+.-. +--+ ++..+.+ .++.+++|++.|.+
T Consensus 178 a~p~al~AI~~--AD~IvlgPGSlyTSI~P~L---lv~gi~~-Ai~~s~A~kV~V~N 228 (341)
T 2p0y_A 178 AVQPVIDAIMA--ADQIVLGPGSLFTSILPNL---TIGNIGR-AVCESDAEVVYICN 228 (341)
T ss_dssp CCHHHHHHHHH--CSEEEECSSCCCCCCHHHH---SSHHHHH-HHHHCSSEEEEECC
T ss_pred CCHHHHHHHHh--CCEEEECCCCCHHHhcccc---cCccHHH-HHHhCCCCEEEEeC
Confidence 35567777777 9999999865221 1122 3344444 46778999999986
No 201
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=21.09 E-value=2.1e+02 Score=19.77 Aligned_cols=47 Identities=9% Similarity=-0.059 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 147 RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 147 ~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
....+...++..+|+|++...-.+ ..++ .....+-...++|++++-.
T Consensus 60 ~~~al~~l~~~~~dlvilD~~l~~-~~g~------~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 60 GLEAVEKAIELKPDVITMDIEMPN-LNGI------EALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSS-SCHH------HHHHHHHHHSCCEEEEEES
T ss_pred HHHHHHHhccCCCCEEEEeCCCCC-CCHH------HHHHHHHhcCCceEEEEec
Confidence 444556667778999999976322 2222 3445555556688888865
No 202
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=21.02 E-value=2.5e+02 Score=21.76 Aligned_cols=31 Identities=6% Similarity=0.113 Sum_probs=25.4
Q ss_pred CcceEEEEeeCCchHHHHHHHHHhcCCCEEEEee
Q 026810 133 GFPYKIHIVKDHDMRERLCLEIERLSLSAVIMGS 166 (232)
Q Consensus 133 ~~~v~~~~~~g~~~~~~I~~~a~~~~~dlIV~G~ 166 (232)
|+++++..+.| ++..+...+...+|++|+|.
T Consensus 43 gi~~~i~~mrg---~~~RI~aL~~gk~D~aI~S~ 73 (231)
T 2ozz_A 43 GIPFYYAHMRG---ADIRVECLLNGVYDMAVVSR 73 (231)
T ss_dssp TSCEEEEECSC---HHHHHHHHHTTSCSEEEEEH
T ss_pred CCcEEEEEccC---hHHHHHHHHcCCCCEEEEec
Confidence 78888777765 66777888889999999994
No 203
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=20.74 E-value=3.7e+02 Score=22.40 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=27.7
Q ss_pred CCcEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEec
Q 026810 40 ARRKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSP 79 (232)
Q Consensus 40 ~~~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~ 79 (232)
..++|+|++.+-.+|..++..+.+ .+-+|..+|+..
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~ 51 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKN 51 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEc
Confidence 457999999999888877765544 478899999863
No 204
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=20.73 E-value=1.3e+02 Score=24.89 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhcCCCEEEEeeCCCCc--ccccCCCccCchhHHHhccCCCcEEEEcC
Q 026810 146 MRERLCLEIERLSLSAVIMGSRGFGA--EKRGSDGKLGSVSDYCVHHCVCPVVVVRY 200 (232)
Q Consensus 146 ~~~~I~~~a~~~~~dlIV~G~~~~~~--~~~~~~~~~gs~~~~vl~~~~~PVliVp~ 200 (232)
+....++.+++ +|+||+|..+.-. +-.+ ++..+.+ .++.+++|++.|.+
T Consensus 174 a~p~al~AI~~--AD~IvlgPGSl~TSI~P~L---lv~gi~~-Ai~~s~A~kV~v~N 224 (326)
T 2q7x_A 174 ASRRVVQTILE--SDMIVLGPGSLFTSILPNI---VIXEIGR-ALLETXAEIAYVCN 224 (326)
T ss_dssp BCSHHHHHHHH--CSEEEECSSCCCCCCHHHH---TSHHHHH-HHHHCSSEEEEECC
T ss_pred CCHHHHHHHHh--CCEEEECCCCCHHHHhhhh---hhccHHH-HHHhccCceEEecc
Confidence 35567777777 9999999865221 1122 3344444 46778999999986
No 205
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=20.55 E-value=1.8e+02 Score=19.47 Aligned_cols=48 Identities=2% Similarity=-0.002 Sum_probs=28.9
Q ss_pred HHHHHHHHHh-cCCCEEEEeeCCCCcccccCCCccCchhHHHhcc-CCCcEEEEcCC
Q 026810 147 RERLCLEIER-LSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHH-CVCPVVVVRYP 201 (232)
Q Consensus 147 ~~~I~~~a~~-~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~-~~~PVliVp~~ 201 (232)
.+++....+. ..+|+|++...-. ...++ ....++-.. ..+||+++-..
T Consensus 55 ~~~~~~~~~~~~~~dlvi~D~~l~-~~~g~------~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 55 AAQIVQRTDGLDAFDILMIDGAAL-DTAEL------AAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp HHHHTTCHHHHTTCSEEEEECTTC-CHHHH------HHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCC-CccHH------HHHHHHHHhCCCCcEEEEeCC
Confidence 5566666666 7899999997632 22222 233444333 35888888643
No 206
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=20.50 E-value=2.4e+02 Score=22.01 Aligned_cols=47 Identities=13% Similarity=-0.044 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
..+..+.+.++|+|.+|....-..... -.+.+.|= ..+.||++.|..
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~gvt~~~~-----~~~v~~ik-~~~~Piil~p~~ 73 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTDDVTEDNV-----IHLMSKIR-RYPLPLVLEISN 73 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSSCCCHHHH-----HHHHHHHT-TSCSCEEEECCC
T ss_pred HHHHHHHHcCCCEEEECCcCCcCHHHH-----HHHHHHhc-CcCCCEEEecCC
Confidence 345556788999999998532222222 23444443 488999999984
No 207
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=20.47 E-value=3.3e+02 Score=21.74 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=38.5
Q ss_pred eEEEEeeC-CchHH--HHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 136 YKIHIVKD-HDMRE--RLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 136 v~~~~~~g-~~~~~--~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
+.+....| .+..+ .+.+.+++.++|.+++-.........- +++ .--..|...++.||+++..+
T Consensus 78 vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~--~l~-~~f~~va~a~~lPiilYn~P 143 (301)
T 3m5v_A 78 VKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQ--GLY-EHYKAIAQSVDIPVLLYNVP 143 (301)
T ss_dssp CEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHH--HHH-HHHHHHHHHCSSCEEEEECH
T ss_pred CeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHH--HHH-HHHHHHHHhCCCCEEEEeCc
Confidence 34444444 33333 456788899999999987654322111 022 23356777889999999753
No 208
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=20.26 E-value=3.9e+02 Score=22.48 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=29.2
Q ss_pred cEEEEEecCChhHHHHHHHHHHHhCCCCCEEEEEEEecC
Q 026810 42 RKIGVAVDLSDESAFAVRWAVHHYLRPGDAVILVHVSPT 80 (232)
Q Consensus 42 ~~ILv~vD~s~~s~~al~~A~~la~~~~~~l~ll~v~~~ 80 (232)
++|+|++.+-.+|..++.++.+. .+.+++.+|+-..
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEeCC
Confidence 47999999999999999888764 3678999998743
No 209
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=20.22 E-value=3.3e+02 Score=21.68 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCEEEEeeCCCCccc-ccCCCccCchhHHHhccCCCcEEEEcCC
Q 026810 149 RLCLEIERLSLSAVIMGSRGFGAEK-RGSDGKLGSVSDYCVHHCVCPVVVVRYP 201 (232)
Q Consensus 149 ~I~~~a~~~~~dlIV~G~~~~~~~~-~~~~~~~gs~~~~vl~~~~~PVliVp~~ 201 (232)
.+.+.+++.++|.+++......... +. ++ .--+.|...++.||+++..+
T Consensus 93 ~la~~a~~~Gadavlv~~P~y~~~~~~~---l~-~~f~~va~a~~lPiilYn~P 142 (297)
T 3flu_A 93 ALSQAAEKAGADYTLSVVPYYNKPSQEG---IY-QHFKTIAEATSIPMIIYNVP 142 (297)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHH---HH-HHHHHHHHHCCSCEEEEECH
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCHHH---HH-HHHHHHHHhCCCCEEEEECC
Confidence 4567888999999998876543221 21 22 23456777889999999753
No 210
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=20.11 E-value=2.9e+02 Score=21.00 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=36.0
Q ss_pred CCcceEEEEeeCCch-HHHHHHHHHhcCCCEEEEeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 132 AGFPYKIHIVKDHDM-RERLCLEIERLSLSAVIMGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 132 ~~~~v~~~~~~g~~~-~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
.|..+.+....++.- ....++.....++|.||+........ ... -+-+...++||+++-...+
T Consensus 37 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~--------~~~-~~~~~~~~iPvV~~~~~~~ 100 (293)
T 3l6u_A 37 NKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYI--------GSA-IEEAKKAGIPVFAIDRMIR 100 (293)
T ss_dssp TTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTT--------HHH-HHHHHHTTCCEEEESSCCC
T ss_pred cCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH--------HHH-HHHHHHcCCCEEEecCCCC
Confidence 366666655544321 22455556678999999875432211 112 2335567999999975444
No 211
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=20.07 E-value=1.3e+02 Score=24.69 Aligned_cols=59 Identities=10% Similarity=-0.031 Sum_probs=34.2
Q ss_pred CcceEEEEeeCCch---HHHHHHHHHhcCCCEEE-EeeCCCCcccccCCCccCchhHHHhccCCCcEEEEcCCCC
Q 026810 133 GFPYKIHIVKDHDM---RERLCLEIERLSLSAVI-MGSRGFGAEKRGSDGKLGSVSDYCVHHCVCPVVVVRYPDD 203 (232)
Q Consensus 133 ~~~v~~~~~~g~~~---~~~I~~~a~~~~~dlIV-~G~~~~~~~~~~~~~~~gs~~~~vl~~~~~PVliVp~~~~ 203 (232)
++.+......+++. .+.+ +.+++.++|+|| +|... .+.++.-+.....+|++.||....
T Consensus 61 g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGs-----------v~D~aK~vA~~~~~p~i~IPTT~~ 123 (354)
T 3ce9_A 61 NIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGK-----------AIDAVKYMAFLRKLPFISVPTSTS 123 (354)
T ss_dssp TCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHH-----------HHHHHHHHHHHHTCCEEEEESCCS
T ss_pred CCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChH-----------HHHHHHHHHhhcCCCEEEecCccc
Confidence 66665444133332 3445 556677889887 55322 233444444445799999998554
Done!