Query 026811
Match_columns 232
No_of_seqs 207 out of 557
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 22:46:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 96.0 0.014 4.7E-07 44.4 6.1 57 115-196 7-63 (89)
2 1wmh_B Partitioning defective- 96.0 0.017 5.7E-07 43.9 6.5 70 114-207 6-76 (86)
3 2ktr_A Sequestosome-1; autopha 95.4 0.033 1.1E-06 44.4 6.3 70 105-197 11-95 (117)
4 2kkc_A Sequestosome-1; P62, PB 95.2 0.043 1.5E-06 42.6 6.3 61 114-197 5-80 (102)
5 1q1o_A Cell division control p 87.8 1.4 4.7E-05 34.0 6.4 75 114-207 5-86 (98)
6 1oey_J P40-PHOX, neutrophil cy 82.5 1.8 6.3E-05 33.9 4.8 41 131-197 28-68 (107)
7 1pqs_A Cell division control p 78.2 2.1 7.2E-05 31.4 3.7 57 132-207 8-65 (77)
8 2bkf_A Zinc-finger protein NBR 78.1 7.7 0.00026 29.3 6.9 52 116-195 8-61 (87)
9 1wj6_A KIAA0049 protein, RSGI 77.6 5.2 0.00018 31.1 6.0 64 116-207 16-79 (101)
10 1oey_A P67-PHOX, neutrophil cy 71.8 13 0.00046 27.6 6.7 69 116-211 7-78 (83)
11 3o27_A Putative uncharacterize 63.1 3 0.0001 30.3 1.6 23 172-194 37-59 (68)
12 1e8p_A Endoglucanase, dockerin 59.1 2.5 8.7E-05 28.6 0.5 13 181-193 20-32 (46)
13 2npt_A Dual specificity mitoge 40.5 65 0.0022 24.9 5.8 57 115-196 15-72 (106)
14 2j4m_A Endoglucanase 45A; dock 33.2 9.9 0.00034 29.5 0.2 13 181-193 21-33 (100)
15 3brc_A Conserved protein of un 28.0 15 0.00051 30.4 0.5 13 12-24 98-110 (156)
16 2kvv_A Putative excisionase; D 26.9 28 0.00097 25.7 1.8 46 102-150 27-72 (78)
17 2i1s_A Hypothetical protein; m 25.4 56 0.0019 26.7 3.5 36 115-150 9-46 (188)
18 3c8c_A Methyl-accepting chemot 24.2 25 0.00084 27.2 1.1 35 176-210 203-238 (240)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.01 E-value=0.014 Score=44.43 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=44.3
Q ss_pred ceeEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEe
Q 026811 115 AFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV 194 (232)
Q Consensus 115 ~~VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLV 194 (232)
+=|||+-.|.- |.+.+...-+|++|...|.++|... .+..+++.|.|.|||+.-+
T Consensus 7 vkvK~~~~gdi--~~~~v~~~i~~~~L~~kv~~~~~~~-----------------------~~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 7 VRVKAYYRGDI--MITHFEPSISFEGLCNEVRDMCSFD-----------------------NEQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp EEEEEESSSCE--EEEEECTTCCHHHHHHHHHHHTTCC-----------------------SSCCEEEEECCSSSCCEEC
T ss_pred EEEEEEeCCeE--EEEECCCCCCHHHHHHHHHHHhCCC-----------------------CCCeEEEEEECCCCCcccc
Confidence 45899999984 4444455679999999999999951 2457899999999998765
Q ss_pred cC
Q 026811 195 GD 196 (232)
Q Consensus 195 GD 196 (232)
-.
T Consensus 62 sS 63 (89)
T 1vd2_A 62 SS 63 (89)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.99 E-value=0.017 Score=43.90 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=51.0
Q ss_pred CceeEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEE
Q 026811 114 AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWML 193 (232)
Q Consensus 114 ~~~VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwML 193 (232)
..-||..-|+.--==.+|-....+|++|..-|+++|.+ ...+|++.|.|.|||++-
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L------------------------~~~~f~i~Y~D~dGDLlp 61 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLLP 61 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEEE
T ss_pred EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC------------------------CCCCEEEEEECCCCCEee
Confidence 34588888877322245555678999999999999985 133689999999999998
Q ss_pred ecCc-ChhHHhhccc
Q 026811 194 VGDV-PWEMFVDSCK 207 (232)
Q Consensus 194 VGDv-PWemFv~s~K 207 (232)
+=+. -..+=+.++|
T Consensus 62 InnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 62 LTNDDSLHRALASGP 76 (86)
T ss_dssp CCSHHHHHHHTTSSS
T ss_pred ecCHHHHHHHHHhCC
Confidence 7655 3344455666
No 3
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=95.38 E-value=0.033 Score=44.42 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=45.8
Q ss_pred chhhhcccCCceeEEEecCc----ccceeeccC-----------CCCCHHHHHHHHHHhhccccCCCcCCCCcccccchh
Q 026811 105 YRKNAMAETAAFVKVCMDGA----PYLRKVDLK-----------TYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNES 169 (232)
Q Consensus 105 ~Rkn~~~~~~~~VKV~MdG~----p~gRKVDL~-----------~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~ 169 (232)
|--|.+....+-||++..|. .==|++=|. .-.+|++|...++++|..
T Consensus 11 ~~~~~~~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~------------------ 72 (117)
T 2ktr_A 11 YEGDELHMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA------------------ 72 (117)
T ss_dssp ---------CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT------------------
T ss_pred eeccccccccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc------------------
Confidence 34444544678899999751 223555543 135999999999999974
Q ss_pred hhhhccCCCCeeeEEEcCCCCeEEecCc
Q 026811 170 KLMDLLNSSDYVPTYEDKDGDWMLVGDV 197 (232)
Q Consensus 170 ~l~d~~~~se~vltYeDkdGDwMLVGDv 197 (232)
+.+..|.+.|.|.|||+.-+-..
T Consensus 73 -----L~~~~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 73 -----LRPGGFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp -----SCSSCEEEEEECTTCCEEEECSH
T ss_pred -----cCCCcEEEEEECCCCCEEEecCH
Confidence 12457999999999998877654
No 4
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.18 E-value=0.043 Score=42.62 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=45.3
Q ss_pred CceeEEEecCc----ccceeeccCC-----------CCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCC
Q 026811 114 AAFVKVCMDGA----PYLRKVDLKT-----------YKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSS 178 (232)
Q Consensus 114 ~~~VKV~MdG~----p~gRKVDL~~-----------~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~s 178 (232)
++-||++..|. .=-|++=|.. ..+|++|...++++|.. +.+.
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~-----------------------l~~~ 61 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA-----------------------LRPG 61 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT-----------------------SCSS
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc-----------------------cCCC
Confidence 35689998762 2346555532 24899999999999985 1245
Q ss_pred CeeeEEEcCCCCeEEecCc
Q 026811 179 DYVPTYEDKDGDWMLVGDV 197 (232)
Q Consensus 179 e~vltYeDkdGDwMLVGDv 197 (232)
.|.+.|.|.|||+.-+-+.
T Consensus 62 ~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 62 GFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp CEEEEEECTTCCEEEECSH
T ss_pred cEEEEEECCCCCEEEecCH
Confidence 7999999999999877665
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=87.84 E-value=1.4 Score=34.01 Aligned_cols=75 Identities=16% Similarity=0.338 Sum_probs=53.5
Q ss_pred CceeEEEecCc------ccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcC
Q 026811 114 AAFVKVCMDGA------PYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDK 187 (232)
Q Consensus 114 ~~~VKV~MdG~------p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDk 187 (232)
+.-|||+-+.. .=.|.|=+..--+|++|...+.+=|..++ +. + . .....+-|+|.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~~----------------~-i-~~~~klkYkDE 65 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-NN----------------N-I-SPITKIKYQDE 65 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-SS----------------C-C-CCCCCEEEECS
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-cc----------------c-c-cceeEEEEEcC
Confidence 35688887742 11366667788899999999999998631 10 0 0 12457999999
Q ss_pred CCCeEEecCc-ChhHHhhccc
Q 026811 188 DGDWMLVGDV-PWEMFVDSCK 207 (232)
Q Consensus 188 dGDwMLVGDv-PWemFv~s~K 207 (232)
|||+...++. =|+|-+++++
T Consensus 66 dGD~Vtl~sddDl~~A~e~~~ 86 (98)
T 1q1o_A 66 DGDFVVLGSDEDWNVAKEMLA 86 (98)
T ss_dssp SSCEEEECSHHHHHHHHHHHH
T ss_pred CCCEEEEcCHHHHHHHHHHHH
Confidence 9999877754 8999888774
No 6
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=82.50 E-value=1.8 Score=33.92 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=33.3
Q ss_pred ccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEecCc
Q 026811 131 DLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDV 197 (232)
Q Consensus 131 DL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVGDv 197 (232)
||+.--.|.+|..-..+-|... +-+|-|.|.||||.-+=|.
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~--------------------------DIaLNYrD~eGDLIrildd 68 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRE--------------------------DIALNYRDAEGDLVRLLSD 68 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCS--------------------------SEEEEEECTTSCEEECCSH
T ss_pred ccccCCCHHHHHHHHHHHhccc--------------------------ceeeeeecCCCCEEEEcch
Confidence 6788889999999999999852 3478899999999765443
No 7
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=78.21 E-value=2.1 Score=31.40 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=41.0
Q ss_pred cCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEecC-cChhHHhhccc
Q 026811 132 LKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGD-VPWEMFVDSCK 207 (232)
Q Consensus 132 L~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVGD-vPWemFv~s~K 207 (232)
...--+|++|...+.+=|..+ . +.+ ......+-|+|.|||+...++ .=|+|-+.++|
T Consensus 8 V~~~i~f~~L~~kI~~kl~~~-~----~~~--------------~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~ 65 (77)
T 1pqs_A 8 VEKVWNFDDLIMAINSKISNT-H----NNN--------------ISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA 65 (77)
T ss_dssp CTTCCCSHHHHHHHHHHTTTT-T----SSC--------------SCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHccc-c----ccc--------------ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence 345568999999999988853 1 111 013567999999999976654 58999888774
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=78.09 E-value=7.7 Score=29.32 Aligned_cols=52 Identities=8% Similarity=0.175 Sum_probs=39.3
Q ss_pred eeEEEecCcccceeeccCC--CCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEE
Q 026811 116 FVKVCMDGAPYLRKVDLKT--YKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWML 193 (232)
Q Consensus 116 ~VKV~MdG~p~gRKVDL~~--~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwML 193 (232)
-+||.--|.. +.+=++. --++++|...+..+|+. ++++|+|-|.|||-.-
T Consensus 8 ~lkV~f~ge~--~rf~vs~~~~~tweel~~mvk~~f~L--------------------------~~~~ikY~DEenD~v~ 59 (87)
T 2bkf_A 8 TLNVTFKNEI--QSFLVSDPENTTWADIEAMVKVSFDL--------------------------NTIQIKYLDEENEEVS 59 (87)
T ss_dssp EEEEEETTEE--EEEEESCGGGCCHHHHHHHHHHHHTC--------------------------SSEEEEEECTTSCEEE
T ss_pred EEEEEEcCCe--eEEEeccCCCCCHHHHHHHHHHHcCC--------------------------CceEEEEEcCCCCEEE
Confidence 3788888884 5533333 67899998888888885 1579999999999876
Q ss_pred ec
Q 026811 194 VG 195 (232)
Q Consensus 194 VG 195 (232)
|=
T Consensus 60 i~ 61 (87)
T 2bkf_A 60 IN 61 (87)
T ss_dssp EC
T ss_pred Ee
Confidence 63
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=77.61 E-value=5.2 Score=31.05 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=45.3
Q ss_pred eeEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEec
Q 026811 116 FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVG 195 (232)
Q Consensus 116 ~VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVG 195 (232)
-+||.--|...==-|.-..--++++|...+..+|+. + .++|.|.|.|||-.-|=
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L------------------------~--~~~IkY~DEenD~V~i~ 69 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL------------------------N--TIQIKYLDEENEEVSIN 69 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCC------------------------S--SBCCEEECTTSCEECCC
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCC------------------------C--ceEEEEecCCCCEEEEe
Confidence 378999998432235333467899999888888885 1 46899999999987763
Q ss_pred CcChhHHhhccc
Q 026811 196 DVPWEMFVDSCK 207 (232)
Q Consensus 196 DvPWemFv~s~K 207 (232)
-+.+|-+.+|
T Consensus 70 --Sq~E~eEAlk 79 (101)
T 1wj6_A 70 --SQGEYEEALK 79 (101)
T ss_dssp --SHHHHHHHHH
T ss_pred --cHHHHHHHHH
Confidence 3566555443
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=71.77 E-value=13 Score=27.55 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=52.7
Q ss_pred eeEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEc-CCCCeEEe
Q 026811 116 FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYED-KDGDWMLV 194 (232)
Q Consensus 116 ~VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeD-kdGDwMLV 194 (232)
=|||+-. +.-.|....=-+|.+|...|.+=+..- + .+-+|-|.| .+|.|++.
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~--~----------------------~~~~LsYk~~~s~~~vi~ 59 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELR--L----------------------EHTKLSYRPRDSNELVPL 59 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCC--G----------------------GGCCEEECCTTCSSCEEC
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCC--c----------------------ceeEEEeeCCCCCCeecc
Confidence 4677766 777888888889999999999888751 1 122688999 68899999
Q ss_pred cCcChhHHhhccc--eeEE
Q 026811 195 GDVPWEMFVDSCK--RMRI 211 (232)
Q Consensus 195 GDvPWemFv~s~K--RLrI 211 (232)
+|.=|+.-...++ ||++
T Consensus 60 ~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 60 SEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp CTTTHHHHHTTCBTTEEEE
T ss_pred ChHHHHHHHHhccCCcEEE
Confidence 9999988777644 4554
No 11
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=63.09 E-value=3 Score=30.28 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=19.0
Q ss_pred hhccCCCCeeeEEEcCCCCeEEe
Q 026811 172 MDLLNSSDYVPTYEDKDGDWMLV 194 (232)
Q Consensus 172 ~d~~~~se~vltYeDkdGDwMLV 194 (232)
+++..+.+|.+++||++|+.+|+
T Consensus 37 LgIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 37 LDIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp TTCCTTCCEEEEEEEETTEEEEE
T ss_pred hCCCCCCEEEEEEecCCCeEEEE
Confidence 34455779999999999999887
No 12
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=59.13 E-value=2.5 Score=28.56 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.1
Q ss_pred eeEEEcCCCCeEE
Q 026811 181 VPTYEDKDGDWML 193 (232)
Q Consensus 181 vltYeDkdGDwML 193 (232)
.++|+|.||||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 4889999999954
No 13
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=40.52 E-value=65 Score=24.92 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=39.0
Q ss_pred ceeEEEec-CcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEE
Q 026811 115 AFVKVCMD-GAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWML 193 (232)
Q Consensus 115 ~~VKV~Md-G~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwML 193 (232)
.-+.+... |..+--.||-..+=++.+|+.++.+..-.-|. -..-|||.|||..-
T Consensus 15 lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT~-------------------------TAFeYEDE~gDRIT 69 (106)
T 2npt_A 15 LVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATT-------------------------TAFEYEDEDGDRIT 69 (106)
T ss_dssp EEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCC-------------------------SEEEEECTTSCEEE
T ss_pred eEEEEECCCCCccccccCCcccccHHHHHHHHHHhCcccee-------------------------eeeeeccccCCeeE
Confidence 34455554 66677788877788999999998876553222 14679999999988
Q ss_pred ecC
Q 026811 194 VGD 196 (232)
Q Consensus 194 VGD 196 (232)
|--
T Consensus 70 VRS 72 (106)
T 2npt_A 70 VRS 72 (106)
T ss_dssp ECS
T ss_pred Ecc
Confidence 743
No 14
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=33.23 E-value=9.9 Score=29.46 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.1
Q ss_pred eeEEEcCCCCeEE
Q 026811 181 VPTYEDKDGDWML 193 (232)
Q Consensus 181 vltYeDkdGDwML 193 (232)
.++|.|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 5789999999954
No 15
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=28.02 E-value=15 Score=30.43 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=9.5
Q ss_pred ccccccCCCCCCC
Q 026811 12 ETELCLGLPGGGN 24 (232)
Q Consensus 12 ~TELRLGLPG~~~ 24 (232)
..-=|||.||+.+
T Consensus 98 IARGRLGvPGSGS 110 (156)
T 3brc_A 98 IARGRLGVPGSGS 110 (156)
T ss_dssp EEEEECSSTTSCE
T ss_pred EEcccccCCCCcc
Confidence 3445999999864
No 16
>2kvv_A Putative excisionase; DNA binding, WHTH motif, structural genomics, N structural genomics consortium (NESG), PSI-2; NMR {Klebsiella pneumoniae}
Probab=26.86 E-value=28 Score=25.72 Aligned_cols=46 Identities=28% Similarity=0.476 Sum_probs=35.3
Q ss_pred CccchhhhcccCCceeEEEecCcccceeeccCCCCCHHHHHHHHHHhhc
Q 026811 102 VRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFS 150 (232)
Q Consensus 102 vrs~Rkn~~~~~~~~VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~ 150 (232)
|+.||+++.-.+.-|++|+-||.|-.+.-. .| +|+++-+=.+.|..
T Consensus 27 IkryR~~~WlEGrhyrrvspdG~p~~~S~~--~Y-N~~~I~~Wie~~~~ 72 (78)
T 2kvv_A 27 IESYRQGAWIEGVHFKRVSPSGEKTLRGTT--WY-NYPEINKFIRDSLE 72 (78)
T ss_dssp HHHHHTTTCCBTTTEEEECSSSSCCTTCEE--EE-EHHHHHHHHHHHHS
T ss_pred HHHHHhchhhheeeeEeeCCCCCCCcCceE--EE-cHHHHHHHHHHHHh
Confidence 578999887779999999999999777666 33 46666666666665
No 17
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=25.40 E-value=56 Score=26.67 Aligned_cols=36 Identities=14% Similarity=0.382 Sum_probs=33.6
Q ss_pred ceeEEEecCc--ccceeeccCCCCCHHHHHHHHHHhhc
Q 026811 115 AFVKVCMDGA--PYLRKVDLKTYKSYQELSDALAKMFS 150 (232)
Q Consensus 115 ~~VKV~MdG~--p~gRKVDL~~~~sY~eL~~aLe~MF~ 150 (232)
.-+||..+|. +|=|.|.+..--+..+|-.+|+..|+
T Consensus 9 y~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 9 YHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhC
Confidence 4589999986 79999999999999999999999998
No 18
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=24.25 E-value=25 Score=27.21 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=26.8
Q ss_pred CCCCeeeEEEcC-CCCeEEecCcChhHHhhccceeE
Q 026811 176 NSSDYVPTYEDK-DGDWMLVGDVPWEMFVDSCKRMR 210 (232)
Q Consensus 176 ~~se~vltYeDk-dGDwMLVGDvPWemFv~s~KRLr 210 (232)
++.+|.+.|.-- ..+|.+|.-+|.+.+...+++++
T Consensus 203 ~g~~~~~~~~~~~~~~W~vv~~~p~~~~~~~~~~~~ 238 (240)
T 3c8c_A 203 NGKPYAVSFSDVEGEDWYVGVVIDEEIAYAALDELR 238 (240)
T ss_dssp TTEEEEEEEEECTTSSEEEEEEECHHHHHHHHHHHH
T ss_pred CCEEEEEEEEecCCCCeEEEEEeCHHHHHHHHHHHh
Confidence 344666777654 45899999999999998887765
Done!