BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026812
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A
Sam-dependent Methyltransferase Of The Duf858/pfam05891
Family
Length = 254
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 11/147 (7%)
Query: 56 GAAADPKHKESS-AMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWE 114
G + P + SS + +SG D++GK +++ +E W+ ++ D EK WY + + YW
Sbjct: 1 GPGSXPSKEASSRNLPISGRDTNGKTYRSTDEXWKAELTGDLYDPEK--GWYGKALEYWR 58
Query: 115 GVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKN 174
V A+V GVLGG +V++VDI+GS F+ L P ++ ALDCG+GIGRITKN
Sbjct: 59 TVPATVSGVLGGXDHVHDVDIEGSRNFIASL-----PGHGTSR---ALDCGAGIGRITKN 110
Query: 175 LLIRYFNEVDLLEPVSHFLDAARESLA 201
LL + + DLLEPV H L+ A+ LA
Sbjct: 111 LLTKLYATTDLLEPVKHXLEEAKRELA 137
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 93 GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPN 152
G E E + Q+Y + +YW+ + +VDG+LGG+G+++ +DI S FLQ L + PN
Sbjct: 18 GSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PN 76
Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212
ALDCG+GIGRITK LL+ F EVD+++ FL A+ L E +
Sbjct: 77 KTGTS--CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG------KR 128
Query: 213 ATNFFCVPLQVIT 225
N+FC LQ T
Sbjct: 129 VRNYFCCGLQDFT 141
>pdb|1EYX|A Chain A, Crystal Structure Of R-Phycoerythrin At 2.2 Angstroms
pdb|1EYX|K Chain K, Crystal Structure Of R-Phycoerythrin At 2.2 Angstroms
Length = 164
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 93 GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML 145
GE GE QEK + YR+ Y V S+ V+GG G ++E I G+ + L
Sbjct: 70 GEAGENQEKINKCYRDIDHYMRLVNYSL--VIGGTGPLDEWGIAGAREVYRTL 120
>pdb|3V57|A Chain A, Crystal Structure Of The B-Phycoerythrin From The Red
Algae Porphyridium Cruentum At Ph8
pdb|3V57|C Chain C, Crystal Structure Of The B-Phycoerythrin From The Red
Algae Porphyridium Cruentum At Ph8
pdb|3V58|A Chain A, Crystal Structure Of The B-Phycoerythrin From The Red
Algae Porphyridium Cruentum At Ph5
pdb|3V58|C Chain C, Crystal Structure Of The B-Phycoerythrin From The Red
Algae Porphyridium Cruentum At Ph5
Length = 164
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 84 AEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQ 143
A+ + + GE GE QEK + YR+ Y V + V+GG G ++E I G+ +
Sbjct: 61 AKYAYLKNPGEAGENQEKINKCYRDVDHYMRLVNYCL--VVGGTGPLDEWGIAGAREVYR 118
Query: 144 ML 145
L
Sbjct: 119 TL 120
>pdb|3H2B|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
pdb|3H2B|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
Length = 203
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199
V LD GSG GR T + L ++++ LEP + ++ AR++
Sbjct: 44 VILDVGSGTGRWTGH-LASLGHQIEGLEPATRLVELARQT 82
>pdb|1LIA|A Chain A, Crystal Structure Of R-Phycoerythrin From Polysiphonia At
2.8 A Resolution
pdb|1LIA|K Chain K, Crystal Structure Of R-Phycoerythrin From Polysiphonia At
2.8 A Resolution
Length = 164
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 88 WREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML 145
+ + GE GE QEK + YR+ Y + ++ V+GG G ++E I G+ + L
Sbjct: 65 YNKNPGEAGENQEKINKCYRDIDHYMRLINYTL--VVGGTGPLDEWGIAGAREVYRTL 120
>pdb|3MWN|A Chain A, Structure Of The Novel 14 Kda Fragment Of Alpha-Subunit Of
Phycoerythrin From The Starving Cyanobacterium
Phormidium Tenue
pdb|3MWN|B Chain B, Structure Of The Novel 14 Kda Fragment Of Alpha-Subunit Of
Phycoerythrin From The Starving Cyanobacterium
Phormidium Tenue
Length = 133
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 88 WREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQML 145
+ + GE GE QEK + YR+ Y + ++ V+GG G ++E I G+ + L
Sbjct: 34 YNKNPGEAGENQEKINKCYRDIDHYMRLINYTL--VVGGTGPLDEWGIAGAREVYRTL 89
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNL 175
+N++D S Q +++RFP N H ++ G G+ I K+L
Sbjct: 157 MNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202
>pdb|3SZE|A Chain A, Crystal Structure Of The Passenger Domain Of The E. Coli
Autotransporter Espp
Length = 968
Score = 27.3 bits (59), Expect = 6.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 152 NARNNQHLVALDCGSGIGRITKNLLIRYFNEV 183
N + + L+A GSG+ + KN I FNEV
Sbjct: 137 NYKGEKKLIAFRAGSGVVSVKKNGRITPFNEV 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,929,958
Number of Sequences: 62578
Number of extensions: 281196
Number of successful extensions: 721
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 11
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)