Query 026812
Match_columns 232
No_of_seqs 162 out of 386
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 13:03:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05891 Methyltransf_PK: AdoM 100.0 6.9E-43 1.5E-47 306.7 3.3 122 102-231 2-124 (218)
2 KOG3178 Hydroxyindole-O-methyl 99.7 3.3E-18 7.1E-23 159.1 6.5 118 100-228 114-237 (342)
3 PF12847 Methyltransf_18: Meth 98.8 5.9E-09 1.3E-13 78.8 5.6 68 159-231 3-72 (112)
4 PRK11207 tellurite resistance 98.6 1.2E-07 2.7E-12 80.7 6.9 67 158-231 31-97 (197)
5 PRK01683 trans-aconitate 2-met 98.5 2E-07 4.4E-12 81.2 7.1 76 137-231 19-95 (258)
6 PF05401 NodS: Nodulation prot 98.5 1.5E-07 3.3E-12 82.6 5.0 67 156-231 42-108 (201)
7 TIGR00477 tehB tellurite resis 98.4 4E-07 8.7E-12 77.5 6.4 65 159-231 32-96 (195)
8 PLN02396 hexaprenyldihydroxybe 98.4 1.4E-06 3E-11 80.9 9.4 68 158-231 132-200 (322)
9 PRK00107 gidB 16S rRNA methylt 98.4 8.3E-07 1.8E-11 76.2 7.1 92 130-231 22-114 (187)
10 PTZ00098 phosphoethanolamine N 98.4 1.3E-06 2.8E-11 77.9 8.4 90 126-231 29-119 (263)
11 PF13847 Methyltransf_31: Meth 98.4 7.4E-07 1.6E-11 72.0 5.7 69 157-231 3-75 (152)
12 smart00650 rADc Ribosomal RNA 98.4 1.2E-06 2.6E-11 72.5 7.0 65 158-231 14-79 (169)
13 PRK00811 spermidine synthase; 98.3 6.5E-07 1.4E-11 80.9 5.5 103 123-231 47-152 (283)
14 PF13649 Methyltransf_25: Meth 98.3 3.3E-07 7.1E-12 69.3 2.7 63 161-231 1-69 (101)
15 PRK14103 trans-aconitate 2-met 98.3 7.9E-07 1.7E-11 77.9 5.4 61 158-231 30-91 (255)
16 PLN02336 phosphoethanolamine N 98.3 1.4E-06 3E-11 82.9 7.0 99 115-231 4-105 (475)
17 PRK11036 putative S-adenosyl-L 98.3 9.6E-07 2.1E-11 77.5 5.2 68 158-231 45-114 (255)
18 PF08241 Methyltransf_11: Meth 98.2 2E-06 4.3E-11 61.9 5.3 60 162-231 1-62 (95)
19 TIGR03587 Pse_Me-ase pseudamin 98.2 3.5E-06 7.7E-11 72.8 7.8 63 158-231 44-107 (204)
20 PF05175 MTS: Methyltransferas 98.2 2.6E-06 5.6E-11 70.9 6.7 81 136-231 18-100 (170)
21 PF03848 TehB: Tellurite resis 98.2 1.5E-06 3.3E-11 75.6 4.7 66 158-231 31-96 (192)
22 TIGR00138 gidB 16S rRNA methyl 98.2 2.7E-06 5.8E-11 72.3 6.0 67 158-231 43-111 (181)
23 TIGR02752 MenG_heptapren 2-hep 98.2 3.8E-06 8.2E-11 71.8 6.8 68 158-231 46-116 (231)
24 TIGR02021 BchM-ChlM magnesium 98.2 5.3E-06 1.1E-10 70.9 7.4 67 157-231 55-121 (219)
25 PRK15001 SAM-dependent 23S rib 98.2 3.8E-06 8.3E-11 79.6 7.1 63 131-202 211-274 (378)
26 PRK10258 biotin biosynthesis p 98.2 4.5E-06 9.8E-11 72.6 6.5 62 158-231 43-105 (251)
27 PRK15451 tRNA cmo(5)U34 methyl 98.1 4.7E-06 1E-10 73.3 6.4 68 158-231 57-127 (247)
28 TIGR02469 CbiT precorrin-6Y C5 98.1 9.9E-06 2.1E-10 61.5 7.4 60 158-223 20-80 (124)
29 PF05219 DREV: DREV methyltran 98.1 5.7E-06 1.2E-10 75.4 6.1 95 117-231 58-153 (265)
30 PRK00274 ksgA 16S ribosomal RN 98.1 7.9E-06 1.7E-10 73.2 6.8 59 158-226 43-101 (272)
31 PRK12335 tellurite resistance 98.1 5.6E-06 1.2E-10 74.4 5.8 65 159-231 122-186 (287)
32 PRK05785 hypothetical protein; 98.0 1.3E-05 2.8E-10 70.2 7.2 40 159-199 53-93 (226)
33 TIGR00080 pimt protein-L-isoas 98.0 1.3E-05 2.7E-10 68.9 7.0 68 157-231 77-148 (215)
34 PF08242 Methyltransf_12: Meth 98.0 3.7E-07 7.9E-12 68.3 -2.3 41 162-202 1-42 (99)
35 PLN02336 phosphoethanolamine N 98.0 2E-05 4.4E-10 74.9 8.1 84 133-231 250-334 (475)
36 TIGR00452 methyltransferase, p 98.0 1.4E-05 3.1E-10 73.9 6.8 66 158-231 122-190 (314)
37 PLN02244 tocopherol O-methyltr 98.0 1.5E-05 3.2E-10 73.7 6.9 70 157-231 118-188 (340)
38 PRK06202 hypothetical protein; 98.0 1.1E-05 2.5E-10 69.6 5.7 43 158-201 61-109 (232)
39 KOG1270 Methyltransferases [Co 98.0 7.4E-06 1.6E-10 75.1 4.6 69 159-231 91-160 (282)
40 PF13659 Methyltransf_26: Meth 98.0 5.5E-06 1.2E-10 63.1 3.2 68 159-231 2-72 (117)
41 TIGR00740 methyltransferase, p 98.0 1.7E-05 3.6E-10 68.9 6.6 64 158-226 54-120 (239)
42 COG4123 Predicted O-methyltran 98.0 5.8E-06 1.3E-10 74.7 3.8 65 158-228 45-111 (248)
43 COG2813 RsmC 16S RNA G1207 met 98.0 1.7E-05 3.8E-10 73.5 6.9 82 131-231 141-226 (300)
44 PF01209 Ubie_methyltran: ubiE 98.0 1.1E-05 2.5E-10 71.3 5.2 69 157-231 47-118 (233)
45 PLN02585 magnesium protoporphy 97.9 1.6E-05 3.5E-10 73.6 6.3 70 158-231 145-214 (315)
46 TIGR02072 BioC biotin biosynth 97.9 2.1E-05 4.6E-10 66.1 6.3 63 159-231 36-100 (240)
47 COG2226 UbiE Methylase involve 97.9 2.7E-05 5.8E-10 69.9 7.2 68 157-231 51-121 (238)
48 PLN02233 ubiquinone biosynthes 97.9 2.2E-05 4.8E-10 69.9 6.7 70 158-231 74-147 (261)
49 PRK13942 protein-L-isoaspartat 97.9 2.7E-05 5.8E-10 67.3 6.8 68 157-231 76-147 (212)
50 PRK00312 pcm protein-L-isoaspa 97.9 2.8E-05 6.1E-10 66.3 6.8 68 157-231 78-146 (212)
51 TIGR00755 ksgA dimethyladenosi 97.9 3.2E-05 6.9E-10 68.2 7.3 61 157-226 29-89 (253)
52 PLN02366 spermidine synthase 97.9 2.9E-05 6.3E-10 71.7 7.2 102 123-231 62-167 (308)
53 PRK13944 protein-L-isoaspartat 97.9 2.5E-05 5.5E-10 66.9 6.3 68 158-231 73-144 (205)
54 PRK05134 bifunctional 3-demeth 97.9 2.4E-05 5.2E-10 67.1 6.1 67 157-231 48-116 (233)
55 PRK08287 cobalt-precorrin-6Y C 97.9 3.8E-05 8.2E-10 64.3 6.9 45 158-202 32-77 (187)
56 COG4106 Tam Trans-aconitate me 97.9 2.3E-05 5E-10 70.6 5.8 63 157-231 30-94 (257)
57 TIGR00537 hemK_rel_arch HemK-r 97.9 4.1E-05 8.8E-10 63.7 7.0 64 159-231 21-84 (179)
58 PRK00121 trmB tRNA (guanine-N( 97.9 1.4E-05 3.1E-10 68.4 4.2 59 159-224 42-103 (202)
59 PRK00216 ubiE ubiquinone/menaq 97.9 3.9E-05 8.4E-10 64.8 6.8 69 158-231 52-123 (239)
60 PRK14967 putative methyltransf 97.8 4.3E-05 9.3E-10 66.0 6.6 67 158-231 37-103 (223)
61 TIGR00417 speE spermidine synt 97.8 4.5E-05 9.7E-10 68.2 6.8 75 123-202 43-118 (270)
62 PRK15068 tRNA mo(5)U34 methylt 97.8 4.5E-05 9.8E-10 70.3 7.0 67 158-231 123-191 (322)
63 PRK10909 rsmD 16S rRNA m(2)G96 97.8 2E-05 4.3E-10 68.5 4.1 61 159-225 55-115 (199)
64 PRK09489 rsmC 16S ribosomal RN 97.8 6.7E-05 1.4E-09 70.0 7.8 151 37-202 78-242 (342)
65 PRK14896 ksgA 16S ribosomal RN 97.8 7.5E-05 1.6E-09 66.4 7.7 59 158-225 30-88 (258)
66 cd02440 AdoMet_MTases S-adenos 97.8 5.2E-05 1.1E-09 53.2 5.1 66 160-231 1-68 (107)
67 TIGR03534 RF_mod_PrmC protein- 97.8 6.2E-05 1.3E-09 64.6 6.6 67 159-231 89-156 (251)
68 PRK07580 Mg-protoporphyrin IX 97.8 3.7E-05 7.9E-10 65.3 5.1 44 158-202 64-107 (230)
69 TIGR01444 fkbM_fam methyltrans 97.8 4.7E-05 1E-09 60.2 5.3 42 161-202 2-44 (143)
70 TIGR03533 L3_gln_methyl protei 97.8 4.4E-05 9.5E-10 69.1 5.6 68 159-231 123-191 (284)
71 PHA03411 putative methyltransf 97.7 4.8E-05 1E-09 69.9 5.8 62 159-231 66-128 (279)
72 TIGR01983 UbiG ubiquinone bios 97.7 6.8E-05 1.5E-09 63.5 6.0 67 158-231 46-114 (224)
73 PRK03522 rumB 23S rRNA methylu 97.7 3.3E-05 7.3E-10 70.5 4.3 66 159-231 175-242 (315)
74 TIGR02081 metW methionine bios 97.7 8.1E-05 1.8E-09 62.7 6.1 40 159-198 15-54 (194)
75 PRK00377 cbiT cobalt-precorrin 97.7 7.1E-05 1.5E-09 63.5 5.8 70 157-231 40-113 (198)
76 PRK14968 putative methyltransf 97.7 0.00013 2.9E-09 59.6 7.1 44 158-202 24-67 (188)
77 PRK00517 prmA ribosomal protei 97.7 6.1E-05 1.3E-09 66.5 5.4 45 158-202 120-164 (250)
78 PHA03412 putative methyltransf 97.7 5.7E-05 1.2E-09 68.1 5.3 62 159-231 51-116 (241)
79 PRK13168 rumA 23S rRNA m(5)U19 97.7 7.3E-05 1.6E-09 71.4 6.2 61 158-225 298-358 (443)
80 COG2227 UbiG 2-polyprenyl-3-me 97.7 2.7E-05 5.8E-10 70.4 3.0 67 157-231 59-126 (243)
81 PRK07402 precorrin-6B methylas 97.7 8E-05 1.7E-09 62.9 5.8 44 158-202 41-86 (196)
82 TIGR01934 MenG_MenH_UbiE ubiqu 97.7 0.00015 3.2E-09 60.6 7.3 67 157-231 39-108 (223)
83 PRK03612 spermidine synthase; 97.7 6.7E-05 1.5E-09 73.4 6.0 103 123-231 268-375 (521)
84 smart00828 PKS_MT Methyltransf 97.7 0.00012 2.6E-09 62.3 6.7 67 160-231 2-69 (224)
85 TIGR00406 prmA ribosomal prote 97.7 6.1E-05 1.3E-09 68.0 5.1 44 159-202 161-204 (288)
86 COG2263 Predicted RNA methylas 97.7 8.7E-05 1.9E-09 65.2 5.7 62 158-226 46-107 (198)
87 PRK11805 N5-glutamine S-adenos 97.6 7.1E-05 1.5E-09 68.7 5.3 68 159-231 135-203 (307)
88 PRK11873 arsM arsenite S-adeno 97.6 0.00011 2.4E-09 64.8 6.0 69 157-231 77-148 (272)
89 PRK11705 cyclopropane fatty ac 97.6 0.00017 3.8E-09 68.1 7.5 44 158-201 168-211 (383)
90 PF00398 RrnaAD: Ribosomal RNA 97.6 0.00026 5.7E-09 63.0 7.8 62 157-227 30-91 (262)
91 PRK08317 hypothetical protein; 97.6 0.00023 5E-09 59.5 6.9 68 157-231 19-89 (241)
92 TIGR03840 TMPT_Se_Te thiopurin 97.6 0.00021 4.5E-09 62.4 6.8 71 159-231 36-115 (213)
93 PLN02490 MPBQ/MSBQ methyltrans 97.5 0.00013 2.8E-09 68.5 5.4 65 158-231 114-180 (340)
94 PTZ00338 dimethyladenosine tra 97.5 0.00021 4.5E-09 65.5 6.6 63 157-225 36-98 (294)
95 PRK04457 spermidine synthase; 97.5 0.00012 2.6E-09 65.7 5.0 69 158-231 67-138 (262)
96 TIGR00536 hemK_fam HemK family 97.5 0.00016 3.5E-09 65.0 5.7 68 159-231 116-184 (284)
97 PRK09328 N5-glutamine S-adenos 97.5 0.00022 4.7E-09 62.4 6.4 45 157-201 108-153 (275)
98 COG2518 Pcm Protein-L-isoaspar 97.5 0.00029 6.2E-09 62.5 7.1 88 128-231 53-140 (209)
99 TIGR03438 probable methyltrans 97.5 0.00011 2.5E-09 66.7 4.7 44 159-202 65-110 (301)
100 PRK01544 bifunctional N5-gluta 97.5 0.00017 3.6E-09 70.6 5.7 69 158-231 139-208 (506)
101 PF13489 Methyltransf_23: Meth 97.5 0.00022 4.8E-09 56.3 5.5 38 157-195 22-59 (161)
102 PF02353 CMAS: Mycolic acid cy 97.5 0.00042 9E-09 62.9 7.8 69 156-231 61-129 (273)
103 PRK15128 23S rRNA m(5)C1962 me 97.4 0.00018 4E-09 68.5 5.1 62 159-224 222-283 (396)
104 TIGR03704 PrmC_rel_meth putati 97.4 0.00019 4.1E-09 63.9 4.9 59 159-226 88-147 (251)
105 PRK13255 thiopurine S-methyltr 97.4 0.0006 1.3E-08 59.8 7.9 67 159-227 39-112 (218)
106 PF06325 PrmA: Ribosomal prote 97.4 0.00017 3.6E-09 66.5 4.5 44 159-202 163-206 (295)
107 PRK13943 protein-L-isoaspartat 97.4 0.00031 6.8E-09 65.3 6.2 44 158-202 81-127 (322)
108 PRK14904 16S rRNA methyltransf 97.4 0.00039 8.4E-09 66.5 6.4 68 158-231 251-320 (445)
109 TIGR02085 meth_trns_rumB 23S r 97.3 0.00019 4.2E-09 67.3 4.2 66 159-231 235-302 (374)
110 TIGR00091 tRNA (guanine-N(7)-) 97.3 0.00028 6.1E-09 59.9 4.6 59 159-223 18-77 (194)
111 PRK11783 rlmL 23S rRNA m(2)G24 97.3 0.00029 6.2E-09 71.4 5.2 69 159-231 540-610 (702)
112 PRK11088 rrmA 23S rRNA methylt 97.3 0.00054 1.2E-08 61.0 6.3 63 158-231 86-153 (272)
113 PRK01581 speE spermidine synth 97.3 0.0005 1.1E-08 65.6 6.1 103 123-231 121-228 (374)
114 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00032 7E-09 65.6 4.6 59 159-224 208-266 (362)
115 PF01135 PCMT: Protein-L-isoas 97.3 0.00019 4.2E-09 62.8 2.9 68 157-231 72-143 (209)
116 TIGR00479 rumA 23S rRNA (uraci 97.2 0.00037 8.1E-09 66.0 4.9 60 158-224 293-352 (431)
117 PRK14966 unknown domain/N5-glu 97.2 0.00091 2E-08 64.7 7.1 66 159-231 253-321 (423)
118 COG2890 HemK Methylase of poly 97.2 0.00041 8.8E-09 63.1 4.4 42 160-202 113-156 (280)
119 PRK04266 fibrillarin; Provisio 97.2 0.00091 2E-08 59.1 6.3 44 157-201 72-117 (226)
120 TIGR02143 trmA_only tRNA (urac 97.2 0.00026 5.6E-09 66.1 2.9 59 160-225 200-258 (353)
121 KOG4300 Predicted methyltransf 97.1 0.00052 1.1E-08 61.7 4.4 67 159-231 78-147 (252)
122 TIGR00478 tly hemolysin TlyA f 97.1 0.00086 1.9E-08 59.7 5.6 42 157-198 75-117 (228)
123 PRK14902 16S rRNA methyltransf 97.1 0.0015 3.3E-08 62.3 7.7 61 158-224 251-313 (444)
124 COG2264 PrmA Ribosomal protein 97.1 0.0011 2.3E-08 61.7 6.3 67 127-202 141-207 (300)
125 COG2230 Cfa Cyclopropane fatty 97.1 0.00096 2.1E-08 61.5 5.9 69 156-232 71-140 (283)
126 PHA01634 hypothetical protein 97.1 0.00066 1.4E-08 57.1 4.3 44 159-202 30-73 (156)
127 PRK10901 16S rRNA methyltransf 97.1 0.0015 3.3E-08 62.2 7.3 67 158-231 245-315 (427)
128 PRK14903 16S rRNA methyltransf 97.1 0.0014 3.1E-08 62.8 7.0 68 158-231 238-309 (431)
129 PLN03075 nicotianamine synthas 97.1 0.002 4.4E-08 59.7 7.7 71 157-231 123-197 (296)
130 COG0030 KsgA Dimethyladenosine 97.0 0.0011 2.4E-08 60.4 5.6 43 158-201 31-73 (259)
131 PRK14901 16S rRNA methyltransf 97.0 0.0022 4.7E-08 61.3 7.8 61 158-224 253-315 (434)
132 TIGR00095 RNA methyltransferas 97.0 0.00084 1.8E-08 57.5 4.5 62 158-224 50-111 (189)
133 TIGR02716 C20_methyl_CrtF C-20 97.0 0.0019 4.2E-08 58.2 6.5 61 157-223 149-210 (306)
134 TIGR00446 nop2p NOL1/NOP2/sun 97.0 0.0013 2.8E-08 58.7 5.3 45 158-202 72-118 (264)
135 PLN02781 Probable caffeoyl-CoA 96.9 0.0014 3E-08 57.9 5.2 76 137-224 55-132 (234)
136 PLN02823 spermine synthase 96.9 0.0024 5.1E-08 59.9 6.7 103 122-231 73-178 (336)
137 COG2242 CobL Precorrin-6B meth 96.8 0.002 4.3E-08 56.4 5.1 47 156-202 33-80 (187)
138 TIGR01177 conserved hypothetic 96.8 0.0047 1E-07 56.7 7.5 68 157-231 182-250 (329)
139 KOG3010 Methyltransferase [Gen 96.7 0.0017 3.7E-08 59.2 4.3 40 159-199 35-74 (261)
140 PRK11727 23S rRNA mA1618 methy 96.7 0.0022 4.9E-08 59.8 5.2 47 157-204 114-162 (321)
141 PRK06922 hypothetical protein; 96.7 0.0021 4.7E-08 65.3 5.3 43 158-201 419-463 (677)
142 COG0357 GidB Predicted S-adeno 96.6 0.013 2.7E-07 52.2 8.7 110 101-231 22-137 (215)
143 TIGR00563 rsmB ribosomal RNA s 96.5 0.0074 1.6E-07 57.5 7.4 44 158-202 239-284 (426)
144 PF05958 tRNA_U5-meth_tr: tRNA 96.5 0.0049 1.1E-07 57.6 5.9 56 160-224 199-256 (352)
145 COG3963 Phospholipid N-methylt 96.5 0.0034 7.5E-08 54.8 4.5 47 156-202 47-95 (194)
146 PF05185 PRMT5: PRMT5 arginine 96.5 0.0028 6E-08 61.6 4.3 68 158-231 187-260 (448)
147 KOG0820 Ribosomal RNA adenine 96.5 0.0052 1.1E-07 57.2 5.7 49 156-205 57-105 (315)
148 PRK14121 tRNA (guanine-N(7)-)- 96.3 0.0071 1.5E-07 58.1 5.7 43 159-202 124-168 (390)
149 COG4976 Predicted methyltransf 96.3 0.0025 5.5E-08 58.2 2.5 42 156-198 124-165 (287)
150 PF08003 Methyltransf_9: Prote 96.3 0.0079 1.7E-07 56.4 5.6 67 157-231 115-184 (315)
151 PRK11188 rrmJ 23S rRNA methylt 96.2 0.0076 1.6E-07 52.2 5.2 33 158-190 52-86 (209)
152 smart00138 MeTrc Methyltransfe 96.2 0.012 2.5E-07 52.9 6.4 43 157-200 99-152 (264)
153 TIGR00438 rrmJ cell division p 96.2 0.003 6.6E-08 52.9 2.4 36 157-192 32-69 (188)
154 PRK04148 hypothetical protein; 96.1 0.0099 2.2E-07 49.3 4.9 40 159-199 18-58 (134)
155 PRK00050 16S rRNA m(4)C1402 me 96.0 0.015 3.3E-07 53.8 6.2 59 159-225 21-81 (296)
156 PLN02672 methionine S-methyltr 96.0 0.0072 1.6E-07 64.5 4.4 90 130-226 97-198 (1082)
157 KOG1540 Ubiquinone biosynthesi 95.9 0.024 5.2E-07 52.5 7.0 72 157-231 100-179 (296)
158 PLN02476 O-methyltransferase 95.9 0.015 3.3E-07 53.4 5.6 73 137-221 105-179 (278)
159 PRK04338 N(2),N(2)-dimethylgua 95.8 0.0082 1.8E-07 57.1 3.4 67 159-231 59-127 (382)
160 PF07021 MetW: Methionine bios 95.7 0.021 4.6E-07 50.2 5.5 41 158-198 14-54 (193)
161 COG0421 SpeE Spermidine syntha 95.7 0.025 5.5E-07 52.0 6.1 72 158-231 77-151 (282)
162 PRK13256 thiopurine S-methyltr 95.6 0.05 1.1E-06 48.6 7.7 67 158-226 44-117 (226)
163 KOG3987 Uncharacterized conser 95.6 0.0074 1.6E-07 54.7 2.2 75 117-198 78-152 (288)
164 PF03602 Cons_hypoth95: Conser 95.6 0.018 3.9E-07 49.4 4.4 45 158-202 43-87 (183)
165 PF02475 Met_10: Met-10+ like- 95.5 0.025 5.5E-07 49.5 5.1 69 158-231 102-171 (200)
166 PF01596 Methyltransf_3: O-met 95.4 0.023 5E-07 49.7 4.6 72 139-222 34-107 (205)
167 COG2519 GCD14 tRNA(1-methylade 95.1 0.044 9.4E-07 50.2 5.6 47 156-202 93-141 (256)
168 PF01564 Spermine_synth: Sperm 95.1 0.024 5.2E-07 50.6 3.8 75 123-202 47-122 (246)
169 PF05724 TPMT: Thiopurine S-me 95.1 0.073 1.6E-06 46.9 6.7 70 157-228 37-113 (218)
170 PF09243 Rsm22: Mitochondrial 95.0 0.027 5.8E-07 51.0 4.0 60 139-203 19-81 (274)
171 COG4122 Predicted O-methyltran 95.0 0.072 1.6E-06 47.5 6.5 61 136-203 45-107 (219)
172 KOG1541 Predicted protein carb 94.9 0.041 9E-07 50.2 4.9 41 157-198 50-90 (270)
173 KOG1499 Protein arginine N-met 94.9 0.039 8.4E-07 52.4 4.9 69 157-231 60-129 (346)
174 PTZ00146 fibrillarin; Provisio 94.8 0.05 1.1E-06 50.5 5.4 39 158-197 133-174 (293)
175 PF02527 GidB: rRNA small subu 94.7 0.13 2.7E-06 44.5 7.2 108 104-231 6-117 (184)
176 PLN02589 caffeoyl-CoA O-methyl 94.5 0.046 9.9E-07 49.3 4.2 71 137-219 66-138 (247)
177 PF08704 GCD14: tRNA methyltra 94.5 0.027 5.8E-07 50.9 2.7 61 156-222 39-102 (247)
178 PF09445 Methyltransf_15: RNA 94.5 0.049 1.1E-06 46.5 4.1 59 160-224 2-60 (163)
179 PF13679 Methyltransf_32: Meth 94.4 0.061 1.3E-06 43.6 4.3 47 156-202 24-75 (141)
180 PF10294 Methyltransf_16: Puta 94.1 0.09 2E-06 44.2 4.9 45 156-202 44-90 (173)
181 KOG2904 Predicted methyltransf 94.0 0.067 1.5E-06 50.1 4.2 45 158-202 149-194 (328)
182 PF02636 Methyltransf_28: Puta 93.9 0.065 1.4E-06 47.3 3.8 45 158-202 19-72 (252)
183 PF05050 Methyltransf_21: Meth 93.9 0.096 2.1E-06 41.4 4.4 54 163-221 1-61 (167)
184 COG0500 SmtA SAM-dependent met 93.8 0.097 2.1E-06 36.6 3.8 38 161-200 52-92 (257)
185 KOG1500 Protein arginine N-met 93.6 0.12 2.6E-06 50.0 5.3 66 157-229 177-243 (517)
186 COG2265 TrmA SAM-dependent met 93.6 0.076 1.7E-06 51.5 4.0 64 157-227 293-356 (432)
187 PF08123 DOT1: Histone methyla 93.4 0.16 3.5E-06 44.5 5.4 59 133-199 26-85 (205)
188 TIGR00308 TRM1 tRNA(guanine-26 93.3 0.059 1.3E-06 51.3 2.6 61 159-225 46-108 (374)
189 KOG2940 Predicted methyltransf 93.0 0.12 2.7E-06 47.6 4.1 61 157-226 72-132 (325)
190 KOG3191 Predicted N6-DNA-methy 92.5 0.18 3.9E-06 44.8 4.3 43 158-201 44-89 (209)
191 PF04816 DUF633: Family of unk 91.7 0.2 4.3E-06 44.0 3.7 64 161-228 1-65 (205)
192 PRK00536 speE spermidine synth 91.3 0.25 5.4E-06 45.1 4.1 71 156-231 71-141 (262)
193 PF00891 Methyltransf_2: O-met 91.2 0.32 7E-06 42.1 4.5 53 157-222 100-153 (241)
194 PRK10742 putative methyltransf 89.7 0.5 1.1E-05 43.2 4.5 42 160-202 91-132 (250)
195 KOG2899 Predicted methyltransf 89.6 0.4 8.6E-06 44.4 3.8 44 158-202 59-104 (288)
196 KOG1501 Arginine N-methyltrans 89.6 0.79 1.7E-05 45.7 6.0 48 158-205 67-114 (636)
197 COG0742 N6-adenine-specific me 89.1 0.62 1.3E-05 40.8 4.5 46 157-202 43-88 (187)
198 COG1565 Uncharacterized conser 88.3 1.1 2.3E-05 43.2 5.9 47 157-203 77-132 (370)
199 PF02390 Methyltransf_4: Putat 88.2 0.49 1.1E-05 40.8 3.3 42 160-202 20-63 (195)
200 PRK11760 putative 23S rRNA C24 87.5 0.95 2E-05 43.4 5.0 33 156-189 210-242 (357)
201 KOG1661 Protein-L-isoaspartate 86.1 1.6 3.5E-05 39.6 5.4 95 128-231 61-164 (237)
202 PRK11933 yebU rRNA (cytosine-C 86.1 1.4 3.1E-05 43.3 5.5 46 157-202 113-160 (470)
203 KOG1271 Methyltransferases [Ge 85.4 1.1 2.5E-05 40.0 4.0 40 160-199 70-110 (227)
204 COG4076 Predicted RNA methylas 84.5 2.1 4.5E-05 38.7 5.2 41 159-200 34-74 (252)
205 TIGR03439 methyl_EasF probable 84.3 1.9 4E-05 40.4 5.1 43 159-201 78-125 (319)
206 COG2384 Predicted SAM-dependen 84.0 2.5 5.4E-05 38.3 5.6 65 159-227 18-83 (226)
207 COG2520 Predicted methyltransf 82.9 2 4.2E-05 40.9 4.7 69 158-231 189-258 (341)
208 KOG3420 Predicted RNA methylas 82.4 1.1 2.4E-05 38.8 2.6 67 158-231 49-116 (185)
209 PF01728 FtsJ: FtsJ-like methy 82.2 0.74 1.6E-05 38.1 1.5 35 157-191 23-59 (181)
210 TIGR02987 met_A_Alw26 type II 82.1 1.6 3.4E-05 42.7 3.9 46 157-202 31-85 (524)
211 cd00315 Cyt_C5_DNA_methylase C 81.3 1.9 4.2E-05 38.8 3.9 42 160-201 2-43 (275)
212 KOG2361 Predicted methyltransf 80.6 2 4.4E-05 39.6 3.8 84 106-201 32-118 (264)
213 KOG2651 rRNA adenine N-6-methy 79.4 2.2 4.7E-05 41.9 3.7 103 81-198 77-194 (476)
214 PF03291 Pox_MCEL: mRNA cappin 77.2 3.9 8.5E-05 38.4 4.7 62 139-200 42-105 (331)
215 COG1189 Predicted rRNA methyla 76.1 3.4 7.3E-05 37.8 3.8 61 157-227 79-139 (245)
216 KOG0790 Protein tyrosine phosp 75.9 2.6 5.7E-05 42.0 3.3 35 136-172 432-466 (600)
217 PF01170 UPF0020: Putative RNA 75.9 3.6 7.8E-05 34.8 3.8 70 157-231 28-108 (179)
218 PF10672 Methyltrans_SAM: S-ad 75.6 6.6 0.00014 36.3 5.7 60 133-202 109-168 (286)
219 KOG0821 Predicted ribosomal RN 75.3 1.5 3.3E-05 40.4 1.4 43 157-199 50-92 (326)
220 KOG2187 tRNA uracil-5-methyltr 74.5 2.3 5.1E-05 42.7 2.6 45 157-202 383-427 (534)
221 PF04445 SAM_MT: Putative SAM- 74.2 3.6 7.8E-05 37.2 3.5 71 159-231 77-153 (234)
222 COG5459 Predicted rRNA methyla 73.9 1.7 3.7E-05 42.4 1.4 52 139-195 99-153 (484)
223 COG4262 Predicted spermidine s 72.9 4.8 0.0001 39.6 4.2 64 157-221 289-355 (508)
224 PRK11783 rlmL 23S rRNA m(2)G24 72.2 8.4 0.00018 39.5 6.0 64 158-226 191-297 (702)
225 COG3897 Predicted methyltransf 69.3 5.1 0.00011 36.0 3.3 42 156-198 78-119 (218)
226 PF01234 NNMT_PNMT_TEMT: NNMT/ 65.6 11 0.00023 34.5 4.7 47 156-202 55-101 (256)
227 PF12147 Methyltransf_20: Puta 65.2 16 0.00034 34.6 5.8 47 156-202 134-183 (311)
228 PF05971 Methyltransf_10: Prot 59.7 15 0.00033 34.4 4.6 47 158-205 103-151 (299)
229 PF03141 Methyltransf_29: Puta 58.7 9.9 0.00022 38.1 3.4 86 83-180 54-140 (506)
230 COG0220 Predicted S-adenosylme 57.2 16 0.00034 32.7 4.1 43 159-202 50-94 (227)
231 PF07942 N2227: N2227-like pro 56.7 18 0.00039 33.4 4.5 42 156-198 55-96 (270)
232 COG1092 Predicted SAM-dependen 56.4 21 0.00046 34.6 5.2 60 133-202 203-262 (393)
233 COG0455 flhG Antiactivator of 54.8 16 0.00035 33.3 3.9 57 130-194 94-150 (262)
234 COG0116 Predicted N6-adenine-s 53.6 28 0.0006 33.8 5.4 44 183-231 257-301 (381)
235 PRK01544 bifunctional N5-gluta 53.0 22 0.00047 35.2 4.7 43 157-200 347-391 (506)
236 KOG2915 tRNA(1-methyladenosine 52.3 28 0.00061 32.9 5.0 47 156-203 104-153 (314)
237 TIGR00006 S-adenosyl-methyltra 50.8 40 0.00087 31.6 5.9 59 159-224 22-81 (305)
238 PF01189 Nol1_Nop2_Fmu: NOL1/N 49.0 59 0.0013 29.6 6.6 46 157-202 85-132 (283)
239 KOG0024 Sorbitol dehydrogenase 48.1 23 0.00051 34.1 3.9 45 156-202 168-215 (354)
240 PF07757 AdoMet_MTase: Predict 47.0 22 0.00047 29.1 3.0 39 136-178 40-78 (112)
241 TIGR00675 dcm DNA-methyltransf 45.5 19 0.0004 33.2 2.8 42 161-202 1-42 (315)
242 PF02384 N6_Mtase: N-6 DNA Met 44.4 53 0.0012 29.4 5.5 55 139-200 35-97 (311)
243 PF02254 TrkA_N: TrkA-N domain 41.9 32 0.00069 25.9 3.2 33 167-199 5-40 (116)
244 PLN02668 indole-3-acetate carb 41.4 11 0.00023 36.5 0.6 22 158-179 64-85 (386)
245 PF07091 FmrO: Ribosomal RNA m 40.0 62 0.0014 29.8 5.2 58 138-202 92-151 (251)
246 PF01555 N6_N4_Mtase: DNA meth 39.6 51 0.0011 27.0 4.3 41 157-198 191-231 (231)
247 KOG2920 Predicted methyltransf 37.9 27 0.00059 32.6 2.6 67 157-226 116-189 (282)
248 PF01269 Fibrillarin: Fibrilla 36.6 80 0.0017 28.8 5.3 40 156-196 72-114 (229)
249 COG0144 Sun tRNA and rRNA cyto 36.5 1E+02 0.0023 29.0 6.3 45 157-202 156-204 (355)
250 KOG1227 Putative methyltransfe 34.4 31 0.00067 33.1 2.4 87 115-202 144-240 (351)
251 cd05188 MDR Medium chain reduc 33.9 69 0.0015 26.6 4.3 42 158-199 135-177 (271)
252 KOG3201 Uncharacterized conser 33.5 22 0.00047 31.5 1.2 72 126-200 1-74 (201)
253 KOG4058 Uncharacterized conser 33.2 71 0.0015 28.1 4.2 38 159-197 74-112 (199)
254 PF06080 DUF938: Protein of un 32.7 33 0.00071 30.5 2.2 40 160-200 28-69 (204)
255 PF01739 CheR: CheR methyltran 31.3 94 0.002 27.0 4.8 42 157-198 31-82 (196)
256 KOG3045 Predicted RNA methylas 30.8 35 0.00076 32.3 2.1 46 139-192 169-214 (325)
257 PF01795 Methyltransf_5: MraW 30.5 1.3E+02 0.0028 28.4 5.9 60 158-224 21-81 (310)
258 COG0172 SerS Seryl-tRNA synthe 29.7 42 0.0009 33.1 2.5 59 168-231 270-338 (429)
259 KOG2793 Putative N2,N2-dimethy 29.0 50 0.0011 30.2 2.8 37 157-193 86-122 (248)
260 cd01483 E1_enzyme_family Super 28.9 43 0.00093 26.5 2.1 29 161-189 2-32 (143)
261 PF00145 DNA_methylase: C-5 cy 28.3 74 0.0016 27.8 3.7 41 160-200 2-42 (335)
262 KOG1208 Dehydrogenases with di 25.1 1.3E+02 0.0027 28.2 4.8 61 159-224 38-98 (314)
263 KOG1975 mRNA cap methyltransfe 24.8 78 0.0017 30.8 3.3 64 133-200 97-160 (389)
264 PRK06035 3-hydroxyacyl-CoA deh 24.5 88 0.0019 27.9 3.5 40 160-199 5-45 (291)
265 cd03111 CpaE_like This protein 24.4 1.4E+02 0.0031 22.6 4.2 42 158-200 44-86 (106)
266 KOG2730 Methylase [General fun 24.1 98 0.0021 28.7 3.7 57 159-221 96-152 (263)
267 COG3640 CooC CO dehydrogenase 23.6 1.1E+02 0.0024 28.4 3.9 52 139-198 123-175 (255)
268 PRK13699 putative methylase; P 23.3 1.5E+02 0.0032 26.2 4.7 45 157-202 163-207 (227)
269 cd08283 FDH_like_1 Glutathione 23.2 1.1E+02 0.0023 28.3 3.9 42 158-199 185-228 (386)
270 PF11968 DUF3321: Putative met 23.2 58 0.0013 29.4 2.1 53 137-191 31-83 (219)
271 COG0275 Predicted S-adenosylme 22.8 1.9E+02 0.004 27.7 5.4 60 158-224 24-85 (314)
272 PF01656 CbiA: CobQ/CobB/MinD/ 22.4 1.3E+02 0.0028 24.1 3.9 42 158-199 96-137 (195)
273 KOG2094 Predicted DNA damage i 21.9 55 0.0012 32.3 1.8 35 130-179 267-301 (490)
274 KOG4589 Cell division protein 21.8 64 0.0014 29.3 2.0 23 157-180 69-91 (232)
275 PF05148 Methyltransf_8: Hypot 20.9 57 0.0012 29.5 1.5 32 158-190 73-106 (219)
276 PRK08293 3-hydroxybutyryl-CoA 20.8 1.2E+02 0.0025 27.2 3.5 40 160-199 5-45 (287)
277 KOG1562 Spermidine synthase [A 20.4 49 0.0011 31.7 1.0 75 123-202 92-167 (337)
278 KOG2539 Mitochondrial/chloropl 20.3 83 0.0018 31.7 2.7 46 157-202 200-248 (491)
No 1
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=100.00 E-value=6.9e-43 Score=306.66 Aligned_cols=122 Identities=48% Similarity=0.888 Sum_probs=96.5
Q ss_pred hhhhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccC
Q 026812 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (232)
Q Consensus 102 ~~~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~ 181 (232)
+..||.+|.+||++++||+|||||||++||++||++|+.||++|.....+ ......+||||||||||||++||+++|+
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 46899999999999999999999999999999999999999999875322 2346789999999999999999999999
Q ss_pred eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH 231 (232)
Q Consensus 182 ~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD 231 (232)
+||+|||+++|+++|+++++. +..+++++||+|||+|+|+. +||
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~------~~~~v~~~~~~gLQ~f~P~~~~YD 124 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGK------DNPRVGEFYCVGLQDFTPEEGKYD 124 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCC------GGCCEEEEEES-GGG----TT-EE
T ss_pred EeEEeccCHHHHHHHHHHhcc------cCCCcceEEecCHhhccCCCCcEe
Confidence 999999999999999999855 24789999999999999985 998
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.73 E-value=3.3e-18 Score=159.12 Aligned_cols=118 Identities=29% Similarity=0.337 Sum_probs=100.2
Q ss_pred hhhhhhhhhhhhcccCCccchhc-cccCCCcccc---cchhhHHHHHHHHhcCCCCC--cCCCcceeeeccCCccccchH
Q 026812 100 EKKTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDRFPN--ARNNQHLVALDCGSGIGRITK 173 (232)
Q Consensus 100 ~~~~~~Y~~a~~YWe~veaTvdG-MLGGf~~vs~---~Di~gS~~FL~~L~~~~~~~--~~~~~~~rALDcGAGIGRVTk 173 (232)
.+.-++|.+++.||.++.++++| |||||.+.+. .|+.+|.+|+..+...+..+ .+-.....++|||+|||||++
T Consensus 114 ~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k 193 (342)
T KOG3178|consen 114 MNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLK 193 (342)
T ss_pred hhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHH
Confidence 34457899999999999999999 8999999877 99999999999987632111 112346799999999999999
Q ss_pred HHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC
Q 026812 174 NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII 228 (232)
Q Consensus 174 ~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~ 228 (232)
++|+ .|.+||+|+++..|+.++..+++ .+|+++++.+||+ +|+.
T Consensus 194 ~ll~-~fp~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~-~P~~ 237 (342)
T KOG3178|consen 194 NLLS-KYPHIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQD-TPKG 237 (342)
T ss_pred HHHH-hCCCCceeecCHHHHHhhhhhhc---------CCcceeccccccc-CCCc
Confidence 9888 89999999999999999999874 2388999999999 9875
No 3
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.83 E-value=5.9e-09 Score=78.81 Aligned_cols=68 Identities=22% Similarity=0.141 Sum_probs=53.1
Q ss_pred eeeeccCCccccchHHHHhh-ccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecC-CCccCCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QVITNIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~-~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgL-QdF~Pe~~YD 231 (232)
.++||+|||+|+++..++.. ...+|+.||+++.|++.|++++.... ...+| ++++..+ .++....+||
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i-~~~~~d~~~~~~~~~~~D 72 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG----LSDRI-TFVQGDAEFDPDFLEPFD 72 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT----TTTTE-EEEESCCHGGTTTSSCEE
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCe-EEEECccccCcccCCCCC
Confidence 58999999999999986662 45799999999999999999983211 13566 8999999 5555555776
No 4
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.58 E-value=1.2e-07 Score=80.68 Aligned_cols=67 Identities=22% Similarity=0.115 Sum_probs=52.1
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..+|||+|||+|+.+..| ++...+|++||+++.+++.|+++++.... ..+ ++.+..+.++.++..||
T Consensus 31 ~~~vLDiGcG~G~~a~~L-a~~g~~V~gvD~S~~~i~~a~~~~~~~~~-----~~v-~~~~~d~~~~~~~~~fD 97 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYL-AANGFDVTAWDKNPMSIANLERIKAAENL-----DNL-HTAVVDLNNLTFDGEYD 97 (197)
T ss_pred CCcEEEECCCCCHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHcCC-----Ccc-eEEecChhhCCcCCCcC
Confidence 358999999999999875 45556999999999999999987755221 123 67788888877666787
No 5
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.54 E-value=2e-07 Score=81.23 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=57.3
Q ss_pred hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcce
Q 026812 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (232)
Q Consensus 137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n 215 (232)
.++.+|..+.. .+..++||+|||.|++|..|.... ..+|..||+++.|++.|++++. .+ +
T Consensus 19 ~~~~ll~~~~~--------~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----------~~-~ 79 (258)
T PRK01683 19 PARDLLARVPL--------ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----------DC-Q 79 (258)
T ss_pred HHHHHHhhCCC--------cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----------CC-e
Confidence 34566655433 234689999999999998755443 3699999999999999998752 22 6
Q ss_pred EEEecCCCccCCCCCC
Q 026812 216 FFCVPLQVITNIIQYH 231 (232)
Q Consensus 216 ~~~vgLQdF~Pe~~YD 231 (232)
+.+..+++|.|...||
T Consensus 80 ~~~~d~~~~~~~~~fD 95 (258)
T PRK01683 80 FVEADIASWQPPQALD 95 (258)
T ss_pred EEECchhccCCCCCcc
Confidence 7888888887777777
No 6
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.49 E-value=1.5e-07 Score=82.60 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=52.3
Q ss_pred CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
.+..+|||+|||+|..|.. |+++++++.++|.++.-++.|++.++..+. | ++.+..+.+|.|+.+||
T Consensus 42 ~ry~~alEvGCs~G~lT~~-LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~-------V-~~~~~dvp~~~P~~~FD 108 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTER-LAPRCDRLLAVDISPRALARARERLAGLPH-------V-EWIQADVPEFWPEGRFD 108 (201)
T ss_dssp SSEEEEEEE--TTSHHHHH-HGGGEEEEEEEES-HHHHHHHHHHTTT-SS-------E-EEEES-TTT---SS-EE
T ss_pred cccceeEecCCCccHHHHH-HHHhhCceEEEeCCHHHHHHHHHhcCCCCC-------e-EEEECcCCCCCCCCCee
Confidence 4567999999999999987 899999999999999999999999977433 3 99999999999999998
No 7
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.44 E-value=4e-07 Score=77.46 Aligned_cols=65 Identities=18% Similarity=0.084 Sum_probs=48.4
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
.++||+|||+|+.+.. |++...+|++||+++.|++.+++...... -.+ ++.+..++++.++..||
T Consensus 32 ~~vLDiGcG~G~~a~~-la~~g~~V~~iD~s~~~l~~a~~~~~~~~------~~v-~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLY-LSLAGYDVRAWDHNPASIASVLDMKAREN------LPL-RTDAYDINAAALNEDYD 96 (195)
T ss_pred CcEEEeCCCCCHHHHH-HHHCCCeEEEEECCHHHHHHHHHHHHHhC------CCc-eeEeccchhccccCCCC
Confidence 5899999999999987 45555699999999999999988764311 112 55666666665555677
No 8
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.41 E-value=1.4e-06 Score=80.86 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=51.3
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD 231 (232)
..+|||+|||.|+++.. |++...+|..||+++++++.|++.....+. ..+| ++.+..++++... .+||
T Consensus 132 g~~ILDIGCG~G~~s~~-La~~g~~V~GID~s~~~i~~Ar~~~~~~~~----~~~i-~~~~~dae~l~~~~~~FD 200 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEP-LARMGATVTGVDAVDKNVKIARLHADMDPV----TSTI-EYLCTTAEKLADEGRKFD 200 (322)
T ss_pred CCEEEEeeCCCCHHHHH-HHHcCCEEEEEeCCHHHHHHHHHHHHhcCc----ccce-eEEecCHHHhhhccCCCC
Confidence 45899999999999986 566667999999999999999987533211 1234 7888888877533 4787
No 9
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.39 E-value=8.3e-07 Score=76.20 Aligned_cols=92 Identities=16% Similarity=0.103 Sum_probs=65.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCC
Q 026812 130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAP 208 (232)
Q Consensus 130 vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~ 208 (232)
+...+-...+.|+..+......+ +..++||+|||+|.++..+.... ..+|+.||+++.|++.|+++++....
T Consensus 22 ~~~~~~~~~~~~~d~l~l~~~l~----~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l--- 94 (187)
T PRK00107 22 IRDPEELWERHILDSLAIAPYLP----GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL--- 94 (187)
T ss_pred cCCHHHHHHHHHHHHHHHHhhcC----CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC---
Confidence 44444455677777765422211 24689999999999998654322 46999999999999999998766321
Q ss_pred CCCCcceEEEecCCCccCCCCCC
Q 026812 209 DMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 209 ~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..+ ++.+..++++.+...||
T Consensus 95 --~~i-~~~~~d~~~~~~~~~fD 114 (187)
T PRK00107 95 --KNV-TVVHGRAEEFGQEEKFD 114 (187)
T ss_pred --CCE-EEEeccHhhCCCCCCcc
Confidence 223 88999999988755887
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.38 E-value=1.3e-06 Score=77.88 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=63.0
Q ss_pred CCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCC
Q 026812 126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205 (232)
Q Consensus 126 Gf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~ 205 (232)
|.+.+|.--+..+..+|..+.. .+..++||+|||+|..+..+......+|+.||+++.+++.|++.+..
T Consensus 29 g~~~~~~gg~~~~~~~l~~l~l--------~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--- 97 (263)
T PTZ00098 29 GEDYISSGGIEATTKILSDIEL--------NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--- 97 (263)
T ss_pred CCCCCCCCchHHHHHHHHhCCC--------CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---
Confidence 3445666666678888887644 23468999999999999875433335999999999999999997643
Q ss_pred CCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812 206 MAPDMHKATNFFCVPLQVIT-NIIQYH 231 (232)
Q Consensus 206 ~~~~~~rv~n~~~vgLQdF~-Pe~~YD 231 (232)
..++ .+.+..+.+.. |+..||
T Consensus 98 ----~~~i-~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 98 ----KNKI-EFEANDILKKDFPENTFD 119 (263)
T ss_pred ----CCce-EEEECCcccCCCCCCCeE
Confidence 1233 66666665433 334666
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.36 E-value=7.4e-07 Score=71.99 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=51.9
Q ss_pred cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN--IIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD 231 (232)
+..++||+|||+|+++..|+..+ ..+|..||.++.|++.|++.+..... ..+ +|++..++++.. +.+||
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~-----~ni-~~~~~d~~~l~~~~~~~~D 75 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL-----DNI-EFIQGDIEDLPQELEEKFD 75 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS-----TTE-EEEESBTTCGCGCSSTTEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc-----ccc-ceEEeehhccccccCCCee
Confidence 34689999999999998865343 36899999999999999997644221 233 899999999652 25676
No 12
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.35 E-value=1.2e-06 Score=72.49 Aligned_cols=65 Identities=22% Similarity=0.161 Sum_probs=52.0
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD 231 (232)
..++||+|||.|.+|..++.. ..+|++||.++.|++.+++++... .++ ++++..+.++.+.. .||
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~-------~~v-~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA-------DNL-TVIHGDALKFDLPKLQPY 79 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC-------CCE-EEEECchhcCCccccCCC
Confidence 358999999999999986655 789999999999999999988541 344 68888888876543 355
No 13
>PRK00811 spermidine synthase; Provisional
Probab=98.34 E-value=6.5e-07 Score=80.92 Aligned_cols=103 Identities=15% Similarity=0.060 Sum_probs=68.2
Q ss_pred cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhh-ccCeeEEecCcHHHHHHHHHHhC
Q 026812 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~-~f~~VDLVEPv~~Fle~Are~l~ 201 (232)
+|.|..+.+..|-..-...|..+.... .....+||+||||.|.++..+|.+ ...+||+||.++.+++.|++++.
T Consensus 47 ~lDg~~q~~~~de~~Y~e~l~h~~~~~-----~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~ 121 (283)
T PRK00811 47 ALDGCVMTTERDEFIYHEMMTHVPLFA-----HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLP 121 (283)
T ss_pred EECCeeeecCcchhhHHHHhhhHHHhh-----CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhH
Confidence 566766666666433344555443211 123468999999999999997765 36899999999999999999885
Q ss_pred CCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812 202 PENHMAPDMHKATNFFCVPLQVITN--IIQYH 231 (232)
Q Consensus 202 ~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD 231 (232)
.......+..++ ++++....+|.+ ..+||
T Consensus 122 ~~~~~~~~d~rv-~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 122 EIAGGAYDDPRV-ELVIGDGIKFVAETENSFD 152 (283)
T ss_pred HhccccccCCce-EEEECchHHHHhhCCCccc
Confidence 321100123565 677776666653 34777
No 14
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.32 E-value=3.3e-07 Score=69.27 Aligned_cols=63 Identities=24% Similarity=0.392 Sum_probs=47.1
Q ss_pred eeccCCccccchHHHHhhcc-----CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812 161 ALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH 231 (232)
Q Consensus 161 ALDcGAGIGRVTk~lLl~~f-----~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD 231 (232)
|||+|||.||++.. |.+.| .++..||.++.|++.++++..... .++ ++++..++++.+.. +||
T Consensus 1 ILDlgcG~G~~~~~-l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~-~~~~~D~~~l~~~~~~~D 69 (101)
T PF13649_consen 1 ILDLGCGTGRVTRA-LARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKV-RFVQADARDLPFSDGKFD 69 (101)
T ss_dssp -EEET-TTSHHHHH-HHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTS-EEEESCTTCHHHHSSSEE
T ss_pred CEEeecCCcHHHHH-HHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------Cce-EEEECCHhHCcccCCCee
Confidence 69999999999987 55555 799999999999999999874411 233 78999998876433 665
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.32 E-value=7.9e-07 Score=77.95 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=48.5
Q ss_pred ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..+|||+|||+|.++..|.... ..+|..||+++.|++.|++. .+ ++.+..++++.+...||
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------------~~-~~~~~d~~~~~~~~~fD 91 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------------GV-DARTGDVRDWKPKPDTD 91 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------------CC-cEEEcChhhCCCCCCce
Confidence 4689999999999998754432 35899999999999999772 12 67888888886666777
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.30 E-value=1.4e-06 Score=82.87 Aligned_cols=99 Identities=17% Similarity=0.288 Sum_probs=61.4
Q ss_pred CCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHH
Q 026812 115 GVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD 194 (232)
Q Consensus 115 ~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle 194 (232)
+++++++.|+=++. -+.+|-.....++..+.. ....++||+|||+|++|.. |++.+.+|+.||+++.|++
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~il~~l~~--------~~~~~vLDlGcG~G~~~~~-la~~~~~v~giD~s~~~l~ 73 (475)
T PLN02336 4 SVDLTVEAMMLDSK-ASDLDKEERPEILSLLPP--------YEGKSVLELGAGIGRFTGE-LAKKAGQVIALDFIESVIK 73 (475)
T ss_pred cccccHHHHhhhcc-hhhcCchhhhHHHhhcCc--------cCCCEEEEeCCCcCHHHHH-HHhhCCEEEEEeCCHHHHH
Confidence 45666665554432 122332333444444322 1235899999999999987 5666889999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCcceEEEecCCC--cc-CCCCCC
Q 026812 195 AARESLAPENHMAPDMHKATNFFCVPLQV--IT-NIIQYH 231 (232)
Q Consensus 195 ~Are~l~~~~~~~~~~~rv~n~~~vgLQd--F~-Pe~~YD 231 (232)
.+++.... ...+ .+++..+.+ +. |...||
T Consensus 74 ~a~~~~~~-------~~~i-~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 74 KNESINGH-------YKNV-KFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred HHHHHhcc-------CCce-EEEEecccccccCCCCCCEE
Confidence 88763211 1233 677777753 22 334666
No 17
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.29 E-value=9.6e-07 Score=77.55 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=51.8
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD 231 (232)
..++||+|||+|.++..| ++...+|.+||+++.|++.|++++..... ..++ ++++..++++. ++..||
T Consensus 45 ~~~vLDiGcG~G~~a~~l-a~~g~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v-~~~~~d~~~l~~~~~~~fD 114 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKL-AELGHQVILCDLSAEMIQRAKQAAEAKGV----SDNM-QFIHCAAQDIAQHLETPVD 114 (255)
T ss_pred CCEEEEeCCCchHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHhcCC----ccce-EEEEcCHHHHhhhcCCCCC
Confidence 358999999999999874 55577999999999999999998754211 1233 67888888775 344676
No 18
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.25 E-value=2e-06 Score=61.92 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=45.2
Q ss_pred eccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812 162 LDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH 231 (232)
Q Consensus 162 LDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD 231 (232)
||+|||.|+.+.. |++. ..+|..+|+++.+++.+++.... .++ ++.+..++++..+ ..||
T Consensus 1 LdiG~G~G~~~~~-l~~~~~~~v~~~D~~~~~~~~~~~~~~~--------~~~-~~~~~d~~~l~~~~~sfD 62 (95)
T PF08241_consen 1 LDIGCGTGRFAAA-LAKRGGASVTGIDISEEMLEQARKRLKN--------EGV-SFRQGDAEDLPFPDNSFD 62 (95)
T ss_dssp EEET-TTSHHHHH-HHHTTTCEEEEEES-HHHHHHHHHHTTT--------STE-EEEESBTTSSSS-TT-EE
T ss_pred CEecCcCCHHHHH-HHhccCCEEEEEeCCHHHHHHHHhcccc--------cCc-hheeehHHhCcccccccc
Confidence 8999999999986 5565 88999999999999999998754 233 4888888888633 3555
No 19
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.25 E-value=3.5e-06 Score=72.79 Aligned_cols=63 Identities=17% Similarity=0.061 Sum_probs=47.3
Q ss_pred ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..+|||+|||+|..+..|.... ..+|..||+++.+++.|++++.. + ++.+..+.+..++..||
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~----------~-~~~~~d~~~~~~~~sfD 107 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN----------I-NIIQGSLFDPFKDNFFD 107 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCC----------C-cEEEeeccCCCCCCCEE
Confidence 3579999999999998854432 46899999999999999987522 2 55666666644455666
No 20
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.25 E-value=2.6e-06 Score=70.91 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=59.5
Q ss_pred hhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccC--eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCc
Q 026812 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (232)
Q Consensus 136 ~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~--~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv 213 (232)
.+|+-+++.+... ...++||+|||+|-++.. |++.+. +|++||.++..++.|++++..... ..
T Consensus 18 ~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~-la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~~- 82 (170)
T PF05175_consen 18 AGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLA-LAKRGPDAKVTAVDINPDALELAKRNAERNGL-----EN- 82 (170)
T ss_dssp HHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHH-HHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC-----TT-
T ss_pred HHHHHHHHHHhhc--------cCCeEEEecCChHHHHHH-HHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc-----cc-
Confidence 4666666666552 345899999999999986 455554 599999999999999999866322 12
Q ss_pred ceEEEecCCCccCCCCCC
Q 026812 214 TNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 214 ~n~~~vgLQdF~Pe~~YD 231 (232)
.++++..+-+..+..+||
T Consensus 83 v~~~~~d~~~~~~~~~fD 100 (170)
T PF05175_consen 83 VEVVQSDLFEALPDGKFD 100 (170)
T ss_dssp EEEEESSTTTTCCTTCEE
T ss_pred ccccccccccccccccee
Confidence 377777776666666777
No 21
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.21 E-value=1.5e-06 Score=75.60 Aligned_cols=66 Identities=21% Similarity=0.132 Sum_probs=49.0
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..+|||+|||-||-|..|..+.| .|++||.++..++.+.+..... .-.| +..+..|.+|.++..||
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~------~l~i-~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEE------GLDI-RTRVADLNDFDFPEEYD 96 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHT------T-TE-EEEE-BGCCBS-TTTEE
T ss_pred CCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhc------Ccee-EEEEecchhccccCCcC
Confidence 46899999999999987555556 8999999999999987654331 1123 78899999999888887
No 22
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.20 E-value=2.7e-06 Score=72.26 Aligned_cols=67 Identities=19% Similarity=0.084 Sum_probs=52.3
Q ss_pred ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..++||+|||+|.+|..+ +..+ .+|.+||+++.+++.+++++..... ..+ ++.+..++++.+...||
T Consensus 43 ~~~vLDiGcGtG~~s~~l-a~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-----~~i-~~i~~d~~~~~~~~~fD 111 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPL-AIARPELKLTLLESNHKKVAFLREVKAELGL-----NNV-EIVNGRAEDFQHEEQFD 111 (181)
T ss_pred CCeEEEecCCCCccHHHH-HHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-----CCe-EEEecchhhccccCCcc
Confidence 358999999999999875 4443 5899999999999999988754211 234 78899999886666887
No 23
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.20 E-value=3.8e-06 Score=71.82 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=49.8
Q ss_pred ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD 231 (232)
..++||+|||+|.++..+.... ..+|..||+++.+++.|++++..... .++ ++++....++. |+..||
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~v-~~~~~d~~~~~~~~~~fD 116 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-----HNV-ELVHGNAMELPFDDNSFD 116 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-----Cce-EEEEechhcCCCCCCCcc
Confidence 4689999999999998744332 24999999999999999998754211 233 67777777665 334676
No 24
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.18 E-value=5.3e-06 Score=70.95 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=50.7
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
+..++||+|||+|.++..+ +....+|..||+++.|++.|++++..... ..++ .+.+..+++.. ..||
T Consensus 55 ~~~~vLDiGcG~G~~~~~l-a~~~~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i-~~~~~d~~~~~--~~fD 121 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIEL-AKRGAIVKAVDISEQMVQMARNRAQGRDV----AGNV-EFEVNDLLSLC--GEFD 121 (219)
T ss_pred CCCEEEEEeCCCCHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCC----CCce-EEEECChhhCC--CCcC
Confidence 3468999999999999885 45567999999999999999998754211 1233 77777777654 5666
No 25
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.18 E-value=3.8e-06 Score=79.64 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=50.4
Q ss_pred cccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCC
Q 026812 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 131 s~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
..+| .|++-||..|... ...+|||+|||.|.++..+.... -.+|++||.++.+++.|++++..
T Consensus 211 ~~LD-~GtrllL~~lp~~--------~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 211 TGLD-IGARFFMQHLPEN--------LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred CCcC-hHHHHHHHhCCcc--------cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 4577 7899999987542 12489999999999998754443 25999999999999999998854
No 26
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.15 E-value=4.5e-06 Score=72.62 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=47.0
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD 231 (232)
..++||+|||+|.+|.. |.....+|..||+++.|++.|+++... .++.+..++++.. +..||
T Consensus 43 ~~~vLDiGcG~G~~~~~-l~~~~~~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRY-WRERGSQVTALDLSPPMLAQARQKDAA-----------DHYLAGDIESLPLATATFD 105 (251)
T ss_pred CCeEEEeeCCCCHHHHH-HHHcCCeEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcccCcCCCCcEE
Confidence 46899999999999986 455678999999999999999987522 1456666666542 33565
No 27
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.14 E-value=4.7e-06 Score=73.26 Aligned_cols=68 Identities=9% Similarity=0.070 Sum_probs=50.0
Q ss_pred ceeeeccCCccccchHHHHhhc---cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~---f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..++||+|||+|..+..++... ..+|+.||+++.|++.|++++..... ..++ ++++..++++.+. .||
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v-~~~~~d~~~~~~~-~~D 127 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPV-DVIEGDIRDIAIE-NAS 127 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCe-EEEeCChhhCCCC-CCC
Confidence 3589999999999998754421 25999999999999999998854211 1244 7788888876433 354
No 28
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.14 E-value=9.9e-06 Score=61.51 Aligned_cols=60 Identities=17% Similarity=-0.011 Sum_probs=44.4
Q ss_pred ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV 223 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd 223 (232)
..++||+|||+|+++..++...- .+|..||+++.+++.+++++..... .++ ++++..+++
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~-~~~~~~~~~ 80 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-----SNI-VIVEGDAPE 80 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-----Cce-EEEeccccc
Confidence 35899999999999998654432 5899999999999999988754211 233 566665554
No 29
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.09 E-value=5.7e-06 Score=75.43 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=63.8
Q ss_pred ccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHH
Q 026812 117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA 196 (232)
Q Consensus 117 eaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~A 196 (232)
..++||+| |.+.+.-.--..-++||. ..+.......+..+.||+|||-|-||.. |++.|++|.+-|.|+.|...+
T Consensus 58 ~T~iNG~L-gRG~MFvfS~~Q~~~LL~---~~~~~~~~~~~~~~lLDlGAGdG~VT~~-l~~~f~~v~aTE~S~~Mr~rL 132 (265)
T PF05219_consen 58 KTDINGIL-GRGSMFVFSEEQFRKLLR---ISGFSWNPDWKDKSLLDLGAGDGEVTER-LAPLFKEVYATEASPPMRWRL 132 (265)
T ss_pred HHhHhhhh-cCCcEEEecHHHHHHHhh---hhccCCCCcccCCceEEecCCCcHHHHH-HHhhcceEEeecCCHHHHHHH
Confidence 45889999 456554433233333333 3222211223567899999999999998 699999999999999998877
Q ss_pred HHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812 197 RESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH 231 (232)
Q Consensus 197 re~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD 231 (232)
++. .|-+++.++|.-.. +||
T Consensus 133 ~~k---------------g~~vl~~~~w~~~~~~fD 153 (265)
T PF05219_consen 133 SKK---------------GFTVLDIDDWQQTDFKFD 153 (265)
T ss_pred HhC---------------CCeEEehhhhhccCCceE
Confidence 761 44566666676333 665
No 30
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.09 E-value=7.9e-06 Score=73.22 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=47.3
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN 226 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P 226 (232)
..++||+|||+|.+|..+ ++.+.+|++||.++.|++.+++++.. .++ ++++..+.++.+
T Consensus 43 ~~~VLEiG~G~G~lt~~L-~~~~~~v~avE~d~~~~~~~~~~~~~--------~~v-~~i~~D~~~~~~ 101 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPL-LERAAKVTAVEIDRDLAPILAETFAE--------DNL-TIIEGDALKVDL 101 (272)
T ss_pred cCeEEEeCCCccHHHHHH-HHhCCcEEEEECCHHHHHHHHHhhcc--------Cce-EEEEChhhcCCH
Confidence 358999999999999875 55567999999999999999987743 233 677777777654
No 31
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.08 E-value=5.6e-06 Score=74.36 Aligned_cols=65 Identities=22% Similarity=0.153 Sum_probs=48.6
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
.++||+|||.||.+..|.. ...+|++||.++.+++.++++..... -.+ ++.+..+.++.++.+||
T Consensus 122 ~~vLDlGcG~G~~~~~la~-~g~~V~avD~s~~ai~~~~~~~~~~~------l~v-~~~~~D~~~~~~~~~fD 186 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLAL-LGFDVTAVDINQQSLENLQEIAEKEN------LNI-RTGLYDINSASIQEEYD 186 (287)
T ss_pred CCEEEeCCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcC------Cce-EEEEechhcccccCCcc
Confidence 4899999999999987544 45599999999999999998764421 122 55666666665556777
No 32
>PRK05785 hypothetical protein; Provisional
Probab=98.05 E-value=1.3e-05 Score=70.16 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=34.7
Q ss_pred eeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHH
Q 026812 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARES 199 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~ 199 (232)
.++||+|||+|.++.. |.+.+ .+|..||+++.|++.|++.
T Consensus 53 ~~VLDlGcGtG~~~~~-l~~~~~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 53 KKVLDVAAGKGELSYH-FKKVFKYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CeEEEEcCCCCHHHHH-HHHhcCCEEEEECCCHHHHHHHHhc
Confidence 5899999999999987 45553 6999999999999999873
No 33
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.04 E-value=1.3e-05 Score=68.93 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=49.9
Q ss_pred cceeeeccCCccccchHHHHhhccCe---eEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~---VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD 231 (232)
+..++||+|||+|.+|.. |++.+.. |..||.++.+++.|++++..... ..+ ++.+....+..+ ...||
T Consensus 77 ~~~~VLDiG~GsG~~a~~-la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-----~~v-~~~~~d~~~~~~~~~~fD 148 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAV-LAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-----DNV-IVIVGDGTQGWEPLAPYD 148 (215)
T ss_pred CcCEEEEECCCccHHHHH-HHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCe-EEEECCcccCCcccCCCC
Confidence 346999999999999974 7777655 99999999999999999865211 233 566666655433 34677
No 34
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.04 E-value=3.7e-07 Score=68.31 Aligned_cols=41 Identities=34% Similarity=0.460 Sum_probs=33.8
Q ss_pred eccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCC
Q 026812 162 LDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 162 LDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
||+|||+|+.+..++... ..+|+.||+++.|++.|++.+..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~ 42 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE 42 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh
Confidence 799999999999876662 57999999999999988887755
No 35
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.00 E-value=2e-05 Score=74.94 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=57.0
Q ss_pred cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCC
Q 026812 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (232)
Q Consensus 133 ~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~r 212 (232)
.++...+.+++.+.. .+..++||+|||.|.++..|......+|..||+++.+++.|+++.... ..+
T Consensus 250 ~~v~~te~l~~~~~~--------~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~------~~~ 315 (475)
T PLN02336 250 GGLETTKEFVDKLDL--------KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR------KCS 315 (475)
T ss_pred chHHHHHHHHHhcCC--------CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC------CCc
Confidence 333445555555432 234589999999999998754443458999999999999999876431 123
Q ss_pred cceEEEecCCCcc-CCCCCC
Q 026812 213 ATNFFCVPLQVIT-NIIQYH 231 (232)
Q Consensus 213 v~n~~~vgLQdF~-Pe~~YD 231 (232)
+ +|.+..+.+.. |+..||
T Consensus 316 v-~~~~~d~~~~~~~~~~fD 334 (475)
T PLN02336 316 V-EFEVADCTKKTYPDNSFD 334 (475)
T ss_pred e-EEEEcCcccCCCCCCCEE
Confidence 3 67777776654 344676
No 36
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.99 E-value=1.4e-05 Score=73.93 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=50.0
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHH---HHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAAR---ESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Ar---e~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..+|||+|||.|..+..++...+..|..|||++.|+.+++ ..+.. ..++ .+.+.+++++.+...||
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~-------~~~v-~~~~~~ie~lp~~~~FD 190 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN-------DKRA-ILEPLGIEQLHELYAFD 190 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-------CCCe-EEEECCHHHCCCCCCcC
Confidence 4689999999999999877776678999999999998753 22222 1233 67778888877666777
No 37
>PLN02244 tocopherol O-methyltransferase
Probab=97.99 E-value=1.5e-05 Score=73.68 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=50.8
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD 231 (232)
+..++||+|||+|.++..|......+|..||+++.+++.|+++...... ..+| +|.+..++++. ++..||
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v-~~~~~D~~~~~~~~~~FD 188 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL----SDKV-SFQVADALNQPFEDGQFD 188 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC----CCce-EEEEcCcccCCCCCCCcc
Confidence 4468999999999999874433346999999999999999987644211 1233 67777777654 345776
No 38
>PRK06202 hypothetical protein; Provisional
Probab=97.98 E-value=1.1e-05 Score=69.59 Aligned_cols=43 Identities=30% Similarity=0.417 Sum_probs=35.6
Q ss_pred ceeeeccCCccccchHHHHhhcc------CeeEEecCcHHHHHHHHHHhC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f------~~VDLVEPv~~Fle~Are~l~ 201 (232)
..++||+|||+|.++..| ++.+ .+|.+||+++.|++.|++...
T Consensus 61 ~~~iLDlGcG~G~~~~~L-~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~ 109 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDL-ARWARRDGLRLEVTAIDPDPRAVAFARANPR 109 (232)
T ss_pred CcEEEEeccCCCHHHHHH-HHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence 468999999999999864 4321 389999999999999998753
No 39
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.98 E-value=7.4e-06 Score=75.06 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=55.4
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCC-CCCCCcceEEEecCCCccCCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~-~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
.++||+|||.|-+|.+ |+++..+|..||+++.++++|++.....|... ....|+ ++.|..++++++. ||
T Consensus 91 ~~ilDvGCGgGLLSep-LArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l-~~~~~~~E~~~~~--fD 160 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEP-LARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRL-EYEDTDVEGLTGK--FD 160 (282)
T ss_pred ceEEEeccCccccchh-hHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceee-ehhhcchhhcccc--cc
Confidence 5699999999999999 89999999999999999999999855555321 111234 7888888888874 87
No 40
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.98 E-value=5.5e-06 Score=63.11 Aligned_cols=68 Identities=16% Similarity=0.106 Sum_probs=52.6
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc---CCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT---NIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~---Pe~~YD 231 (232)
.++||.|||.|+++..++.....+|..||.++..++.|++++..... ..++ ++++..++++. +..+||
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~-~~~~~D~~~~~~~~~~~~~D 72 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL----DDRV-EVIVGDARDLPEPLPDGKFD 72 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT----TTTE-EEEESHHHHHHHTCTTT-EE
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC----CceE-EEEECchhhchhhccCceeE
Confidence 48999999999999876555438999999999999999998865321 2444 88999888876 344665
No 41
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.98 E-value=1.7e-05 Score=68.86 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=48.2
Q ss_pred ceeeeccCCccccchHHHHhhc---cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN 226 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~---f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P 226 (232)
..++||+|||+|..+..++... ..+|..||+++.|++.|++++..... ..++ ++.+..++++.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~ 120 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPV-EILCNDIRHVEI 120 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCe-EEEECChhhCCC
Confidence 3589999999999998755432 24799999999999999998754211 1234 778888887654
No 42
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.98 E-value=5.8e-06 Score=74.73 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=57.5
Q ss_pred ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII 228 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~ 228 (232)
..+|||+|||.|-++. +|++++ .+|++||..+.+.+.|+++++.+++ .++| +|++..+++|.+..
T Consensus 45 ~~~IlDlGaG~G~l~L-~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri-~v~~~Di~~~~~~~ 111 (248)
T COG4123 45 KGRILDLGAGNGALGL-LLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL----EERI-QVIEADIKEFLKAL 111 (248)
T ss_pred CCeEEEecCCcCHHHH-HHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc----hhce-eEehhhHHHhhhcc
Confidence 5699999999999996 678874 6999999999999999999988776 4777 99999999999776
No 43
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=1.7e-05 Score=73.46 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=61.6
Q ss_pred cccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCC
Q 026812 131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAP 208 (232)
Q Consensus 131 s~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~ 208 (232)
.++| .||+-+|..|... ...+|||+|||.|-++.. |++.+ .+|+|||.+..-++.|++|+..
T Consensus 141 ~~lD-~GS~lLl~~l~~~--------~~~~vlDlGCG~Gvlg~~-la~~~p~~~vtmvDvn~~Av~~ar~Nl~~------ 204 (300)
T COG2813 141 DKLD-KGSRLLLETLPPD--------LGGKVLDLGCGYGVLGLV-LAKKSPQAKLTLVDVNARAVESARKNLAA------ 204 (300)
T ss_pred CCcC-hHHHHHHHhCCcc--------CCCcEEEeCCCccHHHHH-HHHhCCCCeEEEEecCHHHHHHHHHhHHH------
Confidence 4567 7999999998662 123899999999999986 56655 5999999999999999999976
Q ss_pred CCCCcc--eEEEecCCCccCCCCCC
Q 026812 209 DMHKAT--NFFCVPLQVITNIIQYH 231 (232)
Q Consensus 209 ~~~rv~--n~~~vgLQdF~Pe~~YD 231 (232)
+++. .++...+.+=..+ +||
T Consensus 205 --N~~~~~~v~~s~~~~~v~~-kfd 226 (300)
T COG2813 205 --NGVENTEVWASNLYEPVEG-KFD 226 (300)
T ss_pred --cCCCccEEEEecccccccc-ccc
Confidence 3333 3666666553333 666
No 44
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.95 E-value=1.1e-05 Score=71.30 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=44.5
Q ss_pred cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD 231 (232)
+..++||+|||+|-+|..+..+.. .+|+.||+++.|++.|++.+..... ..| ++.+...++... ++.||
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-----~~i-~~v~~da~~lp~~d~sfD 118 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-----QNI-EFVQGDAEDLPFPDNSFD 118 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SE-EEEE-BTTB--S-TT-EE
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-----CCe-eEEEcCHHHhcCCCCcee
Confidence 346999999999999987544432 4999999999999999988754221 244 777887887653 34665
No 45
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.95 E-value=1.6e-05 Score=73.61 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=48.4
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..++||+|||+|+++..|. +...+|..||+++.|++.|+++...... ........+|.+..+.++ ...||
T Consensus 145 ~~~VLDlGcGtG~~a~~la-~~g~~V~gvD~S~~ml~~A~~~~~~~~~-~~~~~~~~~f~~~Dl~~l--~~~fD 214 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLA-LEGAIVSASDISAAMVAEAERRAKEALA-ALPPEVLPKFEANDLESL--SGKYD 214 (315)
T ss_pred CCEEEEecCCCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhccc-ccccccceEEEEcchhhc--CCCcC
Confidence 3689999999999998754 5566999999999999999988643100 000011225666676654 34676
No 46
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.94 E-value=2.1e-05 Score=66.07 Aligned_cols=63 Identities=25% Similarity=0.416 Sum_probs=47.8
Q ss_pred eeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD 231 (232)
.++||+|||.|.++..++.... .+|+.||+++.+++.+++.+.. ++ ++++..+.++. |+..||
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---------~~-~~~~~d~~~~~~~~~~fD 100 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---------NV-QFICGDAEKLPLEDSSFD 100 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---------CC-eEEecchhhCCCCCCcee
Confidence 6899999999999987554432 5689999999999999987631 22 66777777765 344676
No 47
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.93 E-value=2.7e-05 Score=69.94 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=49.5
Q ss_pred cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD 231 (232)
+..++||||||+|.+|.. |++.+ .+|.++|+|+.||+.|++.+..... ..| +|.....++.-. ++.||
T Consensus 51 ~g~~vLDva~GTGd~a~~-~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~-----~~i-~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALL-LAKSVGTGEVVGLDISESMLEVAREKLKKKGV-----QNV-EFVVGDAENLPFPDNSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHH-HHHhcCCceEEEEECCHHHHHHHHHHhhccCc-----cce-EEEEechhhCCCCCCccC
Confidence 346899999999999986 67766 7999999999999999998754211 112 566666555542 33555
No 48
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.93 E-value=2.2e-05 Score=69.92 Aligned_cols=70 Identities=14% Similarity=0.004 Sum_probs=48.3
Q ss_pred ceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD 231 (232)
..++||+|||+|+++.. |++.+ .+|..||+++.|++.|++....... ....++ ++.+..++++..+ ..||
T Consensus 74 ~~~VLDlGcGtG~~~~~-la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i-~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFL-LSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNI-EWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCEEEEECCcCCHHHHH-HHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCe-EEEEcccccCCCCCCCEe
Confidence 46899999999999976 55543 4899999999999999876421000 001233 6777777776533 3666
No 49
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.92 E-value=2.7e-05 Score=67.33 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=49.9
Q ss_pred cceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC-ccCCCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV-ITNIIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd-F~Pe~~YD 231 (232)
+..++||+|||+|-+|.. |++.+ .+|..||+++.+++.|++++..... .+| ++.+....+ +.+...||
T Consensus 76 ~g~~VLdIG~GsG~~t~~-la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-----~~v-~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAV-VAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-----DNV-EVIVGDGTLGYEENAPYD 147 (212)
T ss_pred CcCEEEEECCcccHHHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCe-EEEECCcccCCCcCCCcC
Confidence 346899999999999964 66654 5999999999999999999865211 234 566666544 33345787
No 50
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.91 E-value=2.8e-05 Score=66.29 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=49.4
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC-ccCCCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV-ITNIIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd-F~Pe~~YD 231 (232)
+..++||+|||+|..|. +|+..+.+|..||.++.+++.|++++..... ..+ ++.+....+ +.+...||
T Consensus 78 ~~~~VLeiG~GsG~~t~-~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~-----~~v-~~~~~d~~~~~~~~~~fD 146 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAA-VLAHLVRRVFSVERIKTLQWEAKRRLKQLGL-----HNV-SVRHGDGWKGWPAYAPFD 146 (212)
T ss_pred CCCEEEEECCCccHHHH-HHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC-----Cce-EEEECCcccCCCcCCCcC
Confidence 34689999999999996 5777778999999999999999998865321 122 555554432 33335677
No 51
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.91 E-value=3.2e-05 Score=68.21 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=47.3
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN 226 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P 226 (232)
+..++||+|||+|.+|.. |++.+.+|.+||+++.|++.+++++... .++ ++.+..+.++.+
T Consensus 29 ~~~~VLEiG~G~G~lt~~-L~~~~~~v~~iE~d~~~~~~l~~~~~~~-------~~v-~v~~~D~~~~~~ 89 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEP-LLKRAKKVTAIEIDPRLAEILRKLLSLY-------ERL-EVIEGDALKVDL 89 (253)
T ss_pred CcCEEEEeCCCCCHHHHH-HHHhCCcEEEEECCHHHHHHHHHHhCcC-------CcE-EEEECchhcCCh
Confidence 346899999999999987 5666789999999999999999887431 233 566666665543
No 52
>PLN02366 spermidine synthase
Probab=97.91 E-value=2.9e-05 Score=71.67 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=70.8
Q ss_pred cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~ 201 (232)
+|.|....+..|-..-...|.++..... ....+||++|+|.|-+.+.++..- ..+||+||.++..++.|++++.
T Consensus 62 ~lDg~~q~~~~de~~Y~e~l~h~~l~~~-----~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~ 136 (308)
T PLN02366 62 VLDGVIQLTERDECAYQEMITHLPLCSI-----PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFP 136 (308)
T ss_pred EECCEeeecCccHHHHHHHHHHHHHhhC-----CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhh
Confidence 6777777888885444666766543211 235689999999999999876542 4799999999999999999885
Q ss_pred CCCCCCCCCCCcceEEEecCCCcc---CCCCCC
Q 026812 202 PENHMAPDMHKATNFFCVPLQVIT---NIIQYH 231 (232)
Q Consensus 202 ~~~~~~~~~~rv~n~~~vgLQdF~---Pe~~YD 231 (232)
.... +-+..|+ ++++....+|. |..+||
T Consensus 137 ~~~~-~~~dpRv-~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 137 DLAV-GFDDPRV-NLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred hhcc-ccCCCce-EEEEChHHHHHhhccCCCCC
Confidence 4211 1234576 77777754442 345787
No 53
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.90 E-value=2.5e-05 Score=66.92 Aligned_cols=68 Identities=12% Similarity=0.050 Sum_probs=49.5
Q ss_pred ceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD 231 (232)
..++||+|||+|.+|.. |++.+ .+|..||.++.+++.|++++..... ..++ ++++..+.+.-|. ..||
T Consensus 73 ~~~VLDiG~GsG~~~~~-la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~----~~~v-~~~~~d~~~~~~~~~~fD 144 (205)
T PRK13944 73 GMKILEVGTGSGYQAAV-CAEAIERRGKVYTVEIVKELAIYAAQNIERLGY----WGVV-EVYHGDGKRGLEKHAPFD 144 (205)
T ss_pred CCEEEEECcCccHHHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcE-EEEECCcccCCccCCCcc
Confidence 46899999999999965 56554 5999999999999999998855211 1223 6677666654333 4777
No 54
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.90 E-value=2.4e-05 Score=67.12 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=49.2
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD 231 (232)
+..++||+|||.|.++..++ +...+|+.+|+++.+++.|++++.... ..+ ++....++++. +..+||
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~iD~s~~~~~~a~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~fD 116 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMA-RLGADVTGIDASEENIEVARLHALESG------LKI-DYRQTTAEELAAEHPGQFD 116 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHH-HcCCeEEEEcCCHHHHHHHHHHHHHcC------Cce-EEEecCHHHhhhhcCCCcc
Confidence 34689999999999998755 445689999999999999998764311 122 56666666664 335777
No 55
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.88 E-value=3.8e-05 Score=64.26 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=37.6
Q ss_pred ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~ 202 (232)
..++||+|||+|.+|..++...- .+|++||+++.+++.|++++..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~ 77 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR 77 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 35899999999999988554432 4899999999999999998754
No 56
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.88 E-value=2.3e-05 Score=70.59 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=53.7
Q ss_pred cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
+..++.|+|||+|--|+ +|.++| ..|.-+|-|+.|+++|++.+-. .+|....|++|.|+...|
T Consensus 30 ~~~~v~DLGCGpGnsTe-lL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~-----------~~f~~aDl~~w~p~~~~d 94 (257)
T COG4106 30 RPRRVVDLGCGPGNSTE-LLARRWPDAVITGIDSSPAMLAKAAQRLPD-----------ATFEEADLRTWKPEQPTD 94 (257)
T ss_pred ccceeeecCCCCCHHHH-HHHHhCCCCeEeeccCCHHHHHHHHHhCCC-----------CceecccHhhcCCCCccc
Confidence 45789999999999997 588887 8999999999999999987622 288999999999987544
No 57
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.88 E-value=4.1e-05 Score=63.65 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=47.5
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
.++||+|||+|.++..+ ++...+|..||.++.|++.|++++.... .. .++++..+.++.+ .+||
T Consensus 21 ~~vLdlG~G~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~-~~~~~~d~~~~~~-~~fD 84 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRL-KGKGKCILTTDINPFAVKELRENAKLNN------VG-LDVVMTDLFKGVR-GKFD 84 (179)
T ss_pred CeEEEeCCChhHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHHcC------Cc-eEEEEcccccccC-Cccc
Confidence 57999999999999875 4555599999999999999999875421 12 2566666655433 3666
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.87 E-value=1.4e-05 Score=68.45 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=44.8
Q ss_pred eeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecC-CCc
Q 026812 159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QVI 224 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgL-QdF 224 (232)
.++||+|||+|..|..+ ++.+ .+|..||+++.|++.|++++..... .++ ++++..+ +.+
T Consensus 42 ~~VLDiGcGtG~~~~~l-a~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-----~~v-~~~~~d~~~~l 103 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEM-AKANPDINFIGIEVHEPGVGKALKKIEEEGL-----TNL-RLLCGDAVEVL 103 (202)
T ss_pred CeEEEEccCCCHHHHHH-HHHCCCccEEEEEechHHHHHHHHHHHHcCC-----CCE-EEEecCHHHHH
Confidence 58999999999999875 4444 5899999999999999988754211 233 6777776 443
No 59
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.87 E-value=3.9e-05 Score=64.76 Aligned_cols=69 Identities=19% Similarity=0.121 Sum_probs=50.8
Q ss_pred ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD 231 (232)
..++||+|||.|.++..++... ..+|..||+++.+++.+++++..... ... .++++..+.++... ..||
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~-~~~~~~d~~~~~~~~~~~D 123 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL----SGN-VEFVQGDAEALPFPDNSFD 123 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc----ccC-eEEEecccccCCCCCCCcc
Confidence 3689999999999999866655 37999999999999999998754211 122 36777777665432 3565
No 60
>PRK14967 putative methyltransferase; Provisional
Probab=97.83 E-value=4.3e-05 Score=65.99 Aligned_cols=67 Identities=10% Similarity=0.009 Sum_probs=49.4
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..++||+|||+|.++..+....+.+|.+||.++.+++.+++++.... -.+ .+++..+.++.+...||
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~------~~~-~~~~~d~~~~~~~~~fD 103 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG------VDV-DVRRGDWARAVEFRPFD 103 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC------Cee-EEEECchhhhccCCCee
Confidence 36899999999999987443334699999999999999999874411 122 56676776655555666
No 61
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.82 E-value=4.5e-05 Score=68.21 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=53.7
Q ss_pred cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~ 201 (232)
+|+|..+.++.|-..-...|..+..... ....+||++|||.|.+++.+|... +.+|++||.++.+++.|++++.
T Consensus 43 ~ldg~~q~~~~~e~~y~e~l~~~~l~~~-----~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~ 117 (270)
T TIGR00417 43 VLDGVVQTTERDEFIYHEMIAHVPLFTH-----PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLP 117 (270)
T ss_pred EECCcccccCchHHHHHHHhhhhHhhcC-----CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhH
Confidence 4666666666663333455555432111 223489999999999999877665 6899999999999999999874
Q ss_pred C
Q 026812 202 P 202 (232)
Q Consensus 202 ~ 202 (232)
.
T Consensus 118 ~ 118 (270)
T TIGR00417 118 S 118 (270)
T ss_pred h
Confidence 3
No 62
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.82 E-value=4.5e-05 Score=70.33 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=49.8
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHH--hCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~--l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..+|||+|||.|..+..|+......|..|||++.|+.+++.. .... ..+| ++.+.+++++.+...||
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~------~~~i-~~~~~d~e~lp~~~~FD 191 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN------DQRA-HLLPLGIEQLPALKAFD 191 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC------CCCe-EEEeCCHHHCCCcCCcC
Confidence 358999999999999987766667899999999999865432 2110 1234 78888888876555776
No 63
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.81 E-value=2e-05 Score=68.46 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=48.9
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~ 225 (232)
.++||+|||+|.++..+|++.+.+|++||.++.+++.|++|+..... .++ ++++..+.++-
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-----~~v-~~~~~D~~~~l 115 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-----GNA-RVVNTNALSFL 115 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-----CcE-EEEEchHHHHH
Confidence 58999999999999877888889999999999999999999855211 233 67777665543
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.80 E-value=6.7e-05 Score=70.04 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=87.7
Q ss_pred ceeeeecchhhhhhhhhhccccCCCCCCCcccccccccCCCCCcccCHHHHHHHHhccCCchhhh-------hhhh--hh
Q 026812 37 TLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEK-------KTQW--YR 107 (232)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ds~g~~~~s~~emWk~~~~~d~~~~~~-------~~~~--Y~ 107 (232)
.+=++.+-+-|..++-.-+-+.+- -+.-..+-+.|....|- +|...+.+...+....+.-. ...+ .-
T Consensus 78 d~~~~~~pk~k~~~~~~l~~~~~~--l~~g~~i~~~G~~~~g~--~s~~k~~~~~~~~~~~~~ar~~~l~~~~~~~~~~~ 153 (342)
T PRK09489 78 DTLIYYWPKNKQEAQFQLMNLLSL--LPVGTDIFVVGENRSGV--RSAEKMLADYAPLNKIDSARRCGLYHGRLEKQPVF 153 (342)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHh--CCCCCEEEEEEeccccH--HHHHHHHHHhcCccccccceeEEEEEEeccccCCC
Confidence 344566666666555443333221 12234566788888775 78888887754321110000 0000 01
Q ss_pred hhhhcccCCcc---chhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc--Ce
Q 026812 108 EGISYWEGVEA---SVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NE 182 (232)
Q Consensus 108 ~a~~YWe~vea---TvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f--~~ 182 (232)
+..+||..-.- ++...=|.|.+ ..+| .+|+.+|..|... ...++||+|||.|-++..++ +.+ .+
T Consensus 154 ~~~~~~~~y~~~~l~i~~~pgvFs~-~~lD-~gt~lLl~~l~~~--------~~g~VLDlGCG~G~ls~~la-~~~p~~~ 222 (342)
T PRK09489 154 DADKFWKEYQVDGLTVKTLPGVFSR-DGLD-VGSQLLLSTLTPH--------TKGKVLDVGCGAGVLSAVLA-RHSPKIR 222 (342)
T ss_pred cccccceeeecCCEEEEeCCCCCCC-CCCC-HHHHHHHHhcccc--------CCCeEEEeccCcCHHHHHHH-HhCCCCE
Confidence 23556654321 12211222332 4455 5788888877541 12479999999999998754 444 48
Q ss_pred eEEecCcHHHHHHHHHHhCC
Q 026812 183 VDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 183 VDLVEPv~~Fle~Are~l~~ 202 (232)
|++||.++.+++.|++++..
T Consensus 223 v~~vDis~~Al~~A~~nl~~ 242 (342)
T PRK09489 223 LTLSDVSAAALESSRATLAA 242 (342)
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 65
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.80 E-value=7.5e-05 Score=66.36 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=46.9
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~ 225 (232)
..++||+|||.|.+|..+ ++.+.+|.+||.++.+++.+++++... .++ ++++..+.++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L-~~~~~~v~~vEid~~~~~~l~~~~~~~-------~~v-~ii~~D~~~~~ 88 (258)
T PRK14896 30 GDPVLEIGPGKGALTDEL-AKRAKKVYAIELDPRLAEFLRDDEIAA-------GNV-EIIEGDALKVD 88 (258)
T ss_pred cCeEEEEeCccCHHHHHH-HHhCCEEEEEECCHHHHHHHHHHhccC-------CCE-EEEEeccccCC
Confidence 468999999999999875 455789999999999999999987431 334 66777766654
No 66
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.77 E-value=5.2e-05 Score=53.24 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=48.7
Q ss_pred eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN--IIQYH 231 (232)
Q Consensus 160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD 231 (232)
++||+|||.|.++..++.....++..+|+++.+++.+++..... .....++++..+.++.+ ..+||
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d 68 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL------LADNVEVLKGDAEELPPEADESFD 68 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc------cccceEEEEcChhhhccccCCceE
Confidence 47999999999998876645689999999999999998432221 12234788888888763 34565
No 67
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.77 E-value=6.2e-05 Score=64.58 Aligned_cols=67 Identities=21% Similarity=0.154 Sum_probs=49.3
Q ss_pred eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
.++||+|||.|.++..++... -.+|..+|+++.+++.|++++..... .++ ++++..+.+..+..+||
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----~~~-~~~~~d~~~~~~~~~fD 156 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-----DNV-TFLQSDWFEPLPGGKFD 156 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeE-EEEECchhccCcCCcee
Confidence 589999999999998865442 24999999999999999998754211 123 67777765544455665
No 68
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.77 E-value=3.7e-05 Score=65.28 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=37.8
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
..++||+|||+|.++..|+ +...+|+.||+++.+++.|++++..
T Consensus 64 ~~~vLDvGcG~G~~~~~l~-~~~~~v~~~D~s~~~i~~a~~~~~~ 107 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLA-RRGAKVVASDISPQMVEEARERAPE 107 (230)
T ss_pred CCEEEEEeCCCCHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHh
Confidence 3589999999999998855 4456799999999999999998754
No 69
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.76 E-value=4.7e-05 Score=60.18 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=35.3
Q ss_pred eeccCCccccchHHHHhhccC-eeEEecCcHHHHHHHHHHhCC
Q 026812 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 161 ALDcGAGIGRVTk~lLl~~f~-~VDLVEPv~~Fle~Are~l~~ 202 (232)
+||||||+|-.|..++..... +|.+|||++.+.+.+++++..
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHH
Confidence 799999999999875544332 799999999999999998754
No 70
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.75 E-value=4.4e-05 Score=69.12 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=49.6
Q ss_pred eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
.++||+|||+|.++..+.... -.+|.+||.++.+++.|++++..... ..+| ++++..+.+..|..+||
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~----~~~i-~~~~~D~~~~~~~~~fD 191 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL----EDRV-TLIQSDLFAALPGRKYD 191 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-EEEECchhhccCCCCcc
Confidence 589999999999998754432 24899999999999999999854211 1234 67777765444544666
No 71
>PHA03411 putative methyltransferase; Provisional
Probab=97.75 E-value=4.8e-05 Score=69.92 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=49.9
Q ss_pred eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
.+|||+|||+|.++..++... ..+|.+||.++.|++.|++++. ++ ++++..+.+|.+..+||
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----------~v-~~v~~D~~e~~~~~kFD 128 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----------EA-EWITSDVFEFESNEKFD 128 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----------CC-EEEECchhhhcccCCCc
Confidence 489999999999998765543 3699999999999999998752 22 67888888877656776
No 72
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.72 E-value=6.8e-05 Score=63.53 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=50.4
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI--IQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD 231 (232)
..++||+|||+|.++..+.. ...+|+.+|+++.+++.+++++..... .. .++.+..++++.+. ..||
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~-----~~-~~~~~~d~~~~~~~~~~~~D 114 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLAR-LGANVTGIDASEENIEVAKLHAKKDPL-----LK-IEYRCTSVEDLAEKGAKSFD 114 (224)
T ss_pred CCeEEEECCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-----Cc-eEEEeCCHHHhhcCCCCCcc
Confidence 46899999999999987554 445799999999999999998754211 12 36777888777544 4676
No 73
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.72 E-value=3.3e-05 Score=70.45 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=51.6
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI--IQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD 231 (232)
.++||+|||+|.+|.. |++...+|..||.++.+++.|++++..... ..+ +|++..+.+|.+. ..||
T Consensus 175 ~~VLDl~cG~G~~sl~-la~~~~~V~gvD~s~~av~~A~~n~~~~~l-----~~v-~~~~~D~~~~~~~~~~~~D 242 (315)
T PRK03522 175 RSMWDLFCGVGGFGLH-CATPGMQLTGIEISAEAIACAKQSAAELGL-----TNV-QFQALDSTQFATAQGEVPD 242 (315)
T ss_pred CEEEEccCCCCHHHHH-HHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-----Cce-EEEEcCHHHHHHhcCCCCe
Confidence 5899999999999987 556678999999999999999998755211 233 7888888877532 3566
No 74
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.70 E-value=8.1e-05 Score=62.75 Aligned_cols=40 Identities=20% Similarity=-0.046 Sum_probs=33.6
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHH
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are 198 (232)
.++||+|||.|.++..+.......|..||+++.+++.|++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA 54 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH
Confidence 4799999999999987544445578999999999999875
No 75
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.70 E-value=7.1e-05 Score=63.50 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=49.8
Q ss_pred cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI--IQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD 231 (232)
+..++||+|||+|.++..++... ..+|.+||.++.+++.|++++..... .+.+ .+++....++-+. ..||
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v-~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNI-VLIKGEAPEILFTINEKFD 113 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCe-EEEEechhhhHhhcCCCCC
Confidence 44689999999999998754433 36899999999999999998754210 1233 5666666665332 3565
No 76
>PRK14968 putative methyltransferase; Provisional
Probab=97.69 E-value=0.00013 Score=59.61 Aligned_cols=44 Identities=14% Similarity=0.035 Sum_probs=38.3
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
..++||+|||.|.++..++.. ..+|..+|.++.+++.+++++..
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~ 67 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKL 67 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHH
Confidence 358999999999999886555 78999999999999999988754
No 77
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.69 E-value=6.1e-05 Score=66.45 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=37.6
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
..++||+|||+|.++..+......+|..||.++.+++.|++++..
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~ 164 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL 164 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 468999999999999864433345699999999999999998754
No 78
>PHA03412 putative methyltransferase; Provisional
Probab=97.69 E-value=5.7e-05 Score=68.14 Aligned_cols=62 Identities=10% Similarity=0.106 Sum_probs=49.7
Q ss_pred eeeeccCCccccchHHHHhhc----cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~----f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
.+|||+|||+|.++..+...+ -.+|++||.++.+++.|++++.. ..+++..++++.+..+||
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-----------~~~~~~D~~~~~~~~~FD 116 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-----------ATWINADALTTEFDTLFD 116 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-----------CEEEEcchhcccccCCcc
Confidence 589999999999997654332 24899999999999999998632 278888888877666787
No 79
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.68 E-value=7.3e-05 Score=71.36 Aligned_cols=61 Identities=26% Similarity=0.247 Sum_probs=48.5
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~ 225 (232)
..++||+|||+|.+|.. |++.+.+|..||.++.+++.|++++..... ..+ ++++..+.++.
T Consensus 298 ~~~VLDlgcGtG~~sl~-la~~~~~V~gvD~s~~al~~A~~n~~~~~~-----~~v-~~~~~d~~~~l 358 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLP-LARQAAEVVGVEGVEAMVERARENARRNGL-----DNV-TFYHANLEEDF 358 (443)
T ss_pred CCEEEEEeccCCHHHHH-HHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-----Cce-EEEEeChHHhh
Confidence 36899999999999987 566678999999999999999998754211 223 78888877653
No 80
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.68 E-value=2.7e-05 Score=70.36 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=52.7
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD 231 (232)
...++||+|||.|-++.. |++....|+.+|.+++.++.|+..-.++. -. .++-+...||..-. .+||
T Consensus 59 ~g~~vLDvGCGgG~Lse~-mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g------v~-i~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 59 PGLRVLDVGCGGGILSEP-LARLGASVTGIDASEKPIEVAKLHALESG------VN-IDYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCCeEEEecCCccHhhHH-HHHCCCeeEEecCChHHHHHHHHhhhhcc------cc-ccchhhhHHHHHhcCCCcc
Confidence 346899999999999999 67777899999999999999997654421 11 26777778877755 5777
No 81
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.68 E-value=8e-05 Score=62.86 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=37.4
Q ss_pred ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~ 202 (232)
..++||+|||+|.+|..+. +.. .+|.+||+++.|++.|++++..
T Consensus 41 ~~~VLDiG~G~G~~~~~la-~~~~~~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAG-LLCPKGRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCEEEEeCCCCCHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4689999999999998754 332 6999999999999999998754
No 82
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.68 E-value=0.00015 Score=60.56 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=50.3
Q ss_pred cceeeeccCCccccchHHHHhhccC--eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~--~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD 231 (232)
+..++||+|||.|.++..++..... ++..+|+++.+++.+++++.. ..++ ++.+..+.++.. +..||
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i-~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNI-EFIQADAEALPFEDNSFD 108 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCc-eEEecchhcCCCCCCcEE
Confidence 3468999999999999987766653 899999999999999988741 1233 677777776542 23565
No 83
>PRK03612 spermidine synthase; Provisional
Probab=97.67 E-value=6.7e-05 Score=73.45 Aligned_cols=103 Identities=17% Similarity=0.043 Sum_probs=66.1
Q ss_pred cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHH--
Q 026812 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARES-- 199 (232)
Q Consensus 123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~-- 199 (232)
+|.|-.+.+..|-..-..+|....... ..+..+|||+|+|.|-++..++.+-. .+|++||.++.+++.++++
T Consensus 268 ~ldG~~q~s~~de~~y~e~l~~~~l~~-----~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~ 342 (521)
T PRK03612 268 YLNGRLQFSSRDEYRYHEALVHPAMAA-----SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPA 342 (521)
T ss_pred EECCEeeccCccHHHHHHHHHHHHHhh-----CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCc
Confidence 567766677777433344454422111 12346899999999999998775433 7999999999999999994
Q ss_pred hCCCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812 200 LAPENHMAPDMHKATNFFCVPLQVITN--IIQYH 231 (232)
Q Consensus 200 l~~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD 231 (232)
+.......-+..++ ++++....+|-. .++||
T Consensus 343 l~~~~~~~~~dprv-~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 343 LRALNGGALDDPRV-TVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred chhhhccccCCCce-EEEEChHHHHHHhCCCCCC
Confidence 32211001123455 777777766642 34787
No 84
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.66 E-value=0.00012 Score=62.31 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=47.7
Q ss_pred eeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 160 rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
++||+|||.|..+..+.... -.+|..+|+++.+++.|++++..... ..++ ++++..+.+...+..||
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i-~~~~~d~~~~~~~~~fD 69 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL----QGRI-RIFYRDSAKDPFPDTYD 69 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC----Ccce-EEEecccccCCCCCCCC
Confidence 69999999999998755443 14899999999999999998754211 1333 66776664433234677
No 85
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.66 E-value=6.1e-05 Score=68.04 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=38.4
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.++||+|||+|.++..++.....+|.+||.++.+++.|++++..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~ 204 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL 204 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 68999999999999875544457999999999999999999855
No 86
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=8.7e-05 Score=65.24 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=52.6
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN 226 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P 226 (232)
...|||.|||+|+++...++-....|-.||+++..++.+++|.... ..+| +|++..+.+|..
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l------~g~v-~f~~~dv~~~~~ 107 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL------LGDV-EFVVADVSDFRG 107 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh------CCce-EEEEcchhhcCC
Confidence 3579999999999999977777799999999999999999998651 1344 899999998875
No 87
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.64 E-value=7.1e-05 Score=68.68 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=50.7
Q ss_pred eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
.++||+|||+|.++..+.... ..+|.+||.++.+++.|++++..... ..+| ++++..+.++-|..+||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l----~~~i-~~~~~D~~~~l~~~~fD 203 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL----EDRV-TLIESDLFAALPGRRYD 203 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCcE-EEEECchhhhCCCCCcc
Confidence 579999999999998855443 25999999999999999999854211 1344 77887776555544666
No 88
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.62 E-value=0.00011 Score=64.81 Aligned_cols=69 Identities=17% Similarity=0.035 Sum_probs=48.0
Q ss_pred cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD 231 (232)
+..++||+|||.|..+..++.... .+|..||+++.+++.|+++...... .++ ++.+..++++.. +..||
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-----~~v-~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-----TNV-EFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-----CCE-EEEEcchhhCCCCCCcee
Confidence 446999999999998875443332 3799999999999999998644211 233 566666766542 33565
No 89
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.60 E-value=0.00017 Score=68.12 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=37.3
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~ 201 (232)
..++||+|||.|..+..+....-.+|+.||+++.+++.|++++.
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence 46899999999999987544444599999999999999999874
No 90
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.58 E-value=0.00026 Score=63.04 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=49.6
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI 227 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe 227 (232)
....|||+|+|.|.+|..| ++.+.+|.+||.++.|++.+++.+.. ..++ ++++..+-+|++.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L-~~~~~~v~~vE~d~~~~~~L~~~~~~-------~~~~-~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTREL-LKRGKRVIAVEIDPDLAKHLKERFAS-------NPNV-EVINGDFLKWDLY 91 (262)
T ss_dssp TTSEEEEESSTTSCCHHHH-HHHSSEEEEEESSHHHHHHHHHHCTT-------CSSE-EEEES-TTTSCGG
T ss_pred CCCEEEEeCCCCccchhhH-hcccCcceeecCcHhHHHHHHHHhhh-------cccc-eeeecchhccccH
Confidence 3468999999999999985 55569999999999999999998753 2444 7788877777754
No 91
>PRK08317 hypothetical protein; Provisional
Probab=97.56 E-value=0.00023 Score=59.52 Aligned_cols=68 Identities=19% Similarity=0.112 Sum_probs=47.8
Q ss_pred cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD 231 (232)
+..++||+|||.|..+..+.... ..+|..||+++.+++.++++.... ... .++.+..++++. ++..||
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~-~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPN-VEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCc-eEEEecccccCCCCCCCce
Confidence 34689999999999998865443 258999999999999999873221 122 266666666543 223565
No 92
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.56 E-value=0.00021 Score=62.45 Aligned_cols=71 Identities=10% Similarity=-0.102 Sum_probs=48.1
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCC------C-CCCCCcceEEEecCCCccCC--CC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------A-PDMHKATNFFCVPLQVITNI--IQ 229 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~------~-~~~~rv~n~~~vgLQdF~Pe--~~ 229 (232)
.+|||.|||.||.+..| +...-+|+.||.|+..++.|.......... . ....+| ++++..+-++.++ ..
T Consensus 36 ~rvLd~GCG~G~da~~L-A~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWL-AEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNI-EIFCGDFFALTAADLGP 113 (213)
T ss_pred CeEEEeCCCchhHHHHH-HhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCce-EEEEccCCCCCcccCCC
Confidence 58999999999999874 555558999999999999864321111000 0 011344 8889999887753 34
Q ss_pred CC
Q 026812 230 YH 231 (232)
Q Consensus 230 YD 231 (232)
||
T Consensus 114 fD 115 (213)
T TIGR03840 114 VD 115 (213)
T ss_pred cC
Confidence 54
No 93
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.53 E-value=0.00013 Score=68.49 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=46.5
Q ss_pred ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD 231 (232)
..++||+|||+|.++..++... ..+|++||+++.|++.|+++... .++ ++.+..++++.. +..||
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~--------~~i-~~i~gD~e~lp~~~~sFD 180 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KEC-KIIEGDAEDLPFPTDYAD 180 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc--------cCC-eEEeccHHhCCCCCCcee
Confidence 4689999999999998754432 25899999999999999987532 223 556666665432 23555
No 94
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.52 E-value=0.00021 Score=65.55 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=46.9
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~ 225 (232)
+..++||+|||+|.+|..+ ++...+|.+||.++.|++.+++++..... ..++ ++++..+-++.
T Consensus 36 ~~~~VLEIG~G~G~LT~~L-l~~~~~V~avEiD~~li~~l~~~~~~~~~----~~~v-~ii~~Dal~~~ 98 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKL-LQLAKKVIAIEIDPRMVAELKKRFQNSPL----ASKL-EVIEGDALKTE 98 (294)
T ss_pred CcCEEEEecCchHHHHHHH-HHhCCcEEEEECCHHHHHHHHHHHHhcCC----CCcE-EEEECCHhhhc
Confidence 3468999999999999875 45578999999999999999998854210 1233 56666655443
No 95
>PRK04457 spermidine synthase; Provisional
Probab=97.52 E-value=0.00012 Score=65.66 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=50.8
Q ss_pred ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI--IQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD 231 (232)
..++||+|+|.|.+++.++... -.+|++||.++.+++.|++++.... ...++ ++++....+|-+. .+||
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv-~v~~~Da~~~l~~~~~~yD 138 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE----NGERF-EVIEADGAEYIAVHRHSTD 138 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC----CCCce-EEEECCHHHHHHhCCCCCC
Confidence 3589999999999998755443 2589999999999999999985421 12455 7777776666432 3676
No 96
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.52 E-value=0.00016 Score=64.97 Aligned_cols=68 Identities=24% Similarity=0.214 Sum_probs=48.5
Q ss_pred eeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
.++||+|||+|.++..+....- .+|.+||.++..++.|++|+..... ..++ ++++..+-+..+..+||
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~----~~~v-~~~~~d~~~~~~~~~fD 184 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL----EHRV-EFIQSNLFEPLAGQKID 184 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-EEEECchhccCcCCCcc
Confidence 5899999999999988544332 4899999999999999998754211 1234 67776665543433565
No 97
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.51 E-value=0.00022 Score=62.39 Aligned_cols=45 Identities=29% Similarity=0.307 Sum_probs=38.3
Q ss_pred cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~ 201 (232)
+..++||+|||.|.++..++... ..+|.++|.++.+++.|++++.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 34589999999999998865443 2699999999999999999975
No 98
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00029 Score=62.46 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=63.5
Q ss_pred CcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCC
Q 026812 128 GNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA 207 (232)
Q Consensus 128 ~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~ 207 (232)
..||.+.+.. ..+..|.. .+..+|||||||+|=-| -+|+++..+|--||-.+.+++.|+++|....+
T Consensus 53 qtis~P~~vA--~m~~~L~~--------~~g~~VLEIGtGsGY~a-Avla~l~~~V~siEr~~~L~~~A~~~L~~lg~-- 119 (209)
T COG2518 53 QTISAPHMVA--RMLQLLEL--------KPGDRVLEIGTGSGYQA-AVLARLVGRVVSIERIEELAEQARRNLETLGY-- 119 (209)
T ss_pred ceecCcHHHH--HHHHHhCC--------CCCCeEEEECCCchHHH-HHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC--
Confidence 3477777543 33443333 34579999999999999 58999999999999999999999999976432
Q ss_pred CCCCCcceEEEecCCCccCCCCCC
Q 026812 208 PDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 208 ~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..|.-++-=|-+-|.+...||
T Consensus 120 ---~nV~v~~gDG~~G~~~~aPyD 140 (209)
T COG2518 120 ---ENVTVRHGDGSKGWPEEAPYD 140 (209)
T ss_pred ---CceEEEECCcccCCCCCCCcC
Confidence 224333444556666666887
No 99
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.51 E-value=0.00011 Score=66.65 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=38.3
Q ss_pred eeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCC
Q 026812 159 LVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.++||+|||+|+.|+.||... ..+|..||.++.|++.|.+.+..
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~ 110 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA 110 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh
Confidence 579999999999999877665 36899999999999999988744
No 100
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.48 E-value=0.00017 Score=70.59 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=49.5
Q ss_pred ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..++||+|||+|.++..++... ..+|.+||.++.+++.|++++..... ..++ ++++..+-+..+..+||
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l----~~~v-~~~~~D~~~~~~~~~fD 208 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV----TDRI-QIIHSNWFENIEKQKFD 208 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC----ccce-eeeecchhhhCcCCCcc
Confidence 3589999999999998866553 35899999999999999999754211 1234 56666654433444565
No 101
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.48 E-value=0.00022 Score=56.30 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=33.2
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHH
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA 195 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~ 195 (232)
...++||+|||.|.+++.| .+...+|..||+++.+++.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQMIEK 59 (161)
T ss_dssp TTSEEEEESSTTSHHHHHH-HHTTSEEEEEESSHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHhh
Confidence 4569999999999999875 6665699999999999987
No 102
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.47 E-value=0.00042 Score=62.89 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=44.9
Q ss_pred CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
.+..++||+|||-|..+..+..+.-.+|+.|..++.-.+.|++.+..... .++| +|.+....++.+ +||
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v-~v~~~D~~~~~~--~fD 129 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL----EDRV-EVRLQDYRDLPG--KFD 129 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS----SSTE-EEEES-GGG-----S-S
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC----CCce-EEEEeeccccCC--CCC
Confidence 35579999999999999985555456999999999999999988765211 2344 677766666554 787
No 103
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.43 E-value=0.00018 Score=68.49 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=48.3
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI 224 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF 224 (232)
.++||||||+|-++...+.....+|+.||.++.+++.|++|+..... +..++ ++++..+-+|
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl---~~~~v-~~i~~D~~~~ 283 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKL---DLSKA-EFVRDDVFKL 283 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCCcE-EEEEccHHHH
Confidence 58999999999999887776677999999999999999999865211 00133 6777776665
No 104
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.43 E-value=0.00019 Score=63.94 Aligned_cols=59 Identities=20% Similarity=0.107 Sum_probs=45.1
Q ss_pred eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN 226 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P 226 (232)
.++||+|||+|.++..+.... ..+|.+||.++.+++.|++|+.. .++ ++++..+.++.+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~--------~~~-~~~~~D~~~~l~ 147 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD--------AGG-TVHEGDLYDALP 147 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCC-EEEEeechhhcc
Confidence 489999999999998754432 24899999999999999999854 122 567777665543
No 105
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.42 E-value=0.0006 Score=59.77 Aligned_cols=67 Identities=12% Similarity=-0.078 Sum_probs=44.9
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCC-------CCCCCCcceEEEecCCCccCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-------APDMHKATNFFCVPLQVITNI 227 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~-------~~~~~rv~n~~~vgLQdF~Pe 227 (232)
.+|||.|||.||.+..| +...-+|++||+++..++.+...-+..+.. .....+| ++++..+-++.+.
T Consensus 39 ~rvL~~gCG~G~da~~L-A~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v-~~~~~D~~~l~~~ 112 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWL-AEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI-TIYCGDFFALTAA 112 (218)
T ss_pred CeEEEeCCCChHhHHHH-HhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCce-EEEECcccCCCcc
Confidence 58999999999999875 555558999999999999874321111000 0012344 7777777776543
No 106
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.41 E-value=0.00017 Score=66.53 Aligned_cols=44 Identities=23% Similarity=0.160 Sum_probs=37.3
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.++||+|||+|-.+.--+.-...+|.++|.++.-++.|++|...
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHH
Confidence 58999999999999764444468999999999999999999865
No 107
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.40 E-value=0.00031 Score=65.33 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=37.5
Q ss_pred ceeeeccCCccccchHHHHhhccC---eeEEecCcHHHHHHHHHHhCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~---~VDLVEPv~~Fle~Are~l~~ 202 (232)
..++||+|||+|.+|.. |++.+. +|..||.++.+++.|++++..
T Consensus 81 g~~VLDIG~GtG~~a~~-LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~ 127 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAV-MSRVVGEKGLVVSVEYSRKICEIAKRNVRR 127 (322)
T ss_pred CCEEEEEeCCccHHHHH-HHHhcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 46899999999999976 566553 599999999999999998754
No 108
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.35 E-value=0.00039 Score=66.54 Aligned_cols=68 Identities=9% Similarity=-0.037 Sum_probs=50.6
Q ss_pred ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..++||+|||+|..|..+.... ..+|.+||.++.+++.+++++..... .. .++.+...+++.+...||
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-----~~-v~~~~~Da~~~~~~~~fD 320 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-----TI-IETIEGDARSFSPEEQPD 320 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-----Ce-EEEEeCcccccccCCCCC
Confidence 3689999999999997644322 35899999999999999999855211 12 267777777776655676
No 109
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.35 E-value=0.00019 Score=67.30 Aligned_cols=66 Identities=12% Similarity=0.009 Sum_probs=50.8
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI--IQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD 231 (232)
.++||+|||+|.+|..+. ..+.+|..||.++..++.|++|+..... ..+ +|++..+.+|.+. .+||
T Consensus 235 ~~vLDL~cG~G~~~l~la-~~~~~v~~vE~~~~av~~a~~N~~~~~~-----~~~-~~~~~d~~~~~~~~~~~~D 302 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCA-GPDTQLTGIEIESEAIACAQQSAQMLGL-----DNL-SFAALDSAKFATAQMSAPE 302 (374)
T ss_pred CEEEEccCCccHHHHHHh-hcCCeEEEEECCHHHHHHHHHHHHHcCC-----CcE-EEEECCHHHHHHhcCCCCC
Confidence 489999999999998755 5568999999999999999999855211 233 7888888776542 2455
No 110
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.32 E-value=0.00028 Score=59.90 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=43.9
Q ss_pred eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV 223 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd 223 (232)
.++||+|||.|.++..++... -.+|..||+++.+++.|++++..... ..| ++.+..+.+
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-----~ni-~~i~~d~~~ 77 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-----KNL-HVLCGDANE 77 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-----CCE-EEEccCHHH
Confidence 489999999999998865443 24899999999999999887654211 123 566666654
No 111
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.30 E-value=0.00029 Score=71.36 Aligned_cols=69 Identities=9% Similarity=0.002 Sum_probs=51.9
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN--IIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD 231 (232)
.++||||||+|.+|..++.....+|+.||.++.+++.|++|+..... +..++ ++++...-+|-. ..+||
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~---~~~~v-~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGL---SGRQH-RLIQADCLAWLKEAREQFD 610 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---Cccce-EEEEccHHHHHHHcCCCcC
Confidence 58999999999999997766567899999999999999999865321 11244 777877655432 23666
No 112
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.30 E-value=0.00054 Score=60.97 Aligned_cols=63 Identities=16% Similarity=0.060 Sum_probs=44.1
Q ss_pred ceeeeccCCccccchHHHHhhcc----CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f----~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD 231 (232)
..++||+|||+|..+..|....- .+|..||+++.+++.|++.... + .+.+..++++.. +..||
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~----------~-~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQ----------V-TFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCC----------C-eEEEeecccCCCcCCcee
Confidence 35799999999999987544321 2689999999999999876421 2 455556665432 23555
No 113
>PRK01581 speE spermidine synthase; Validated
Probab=97.27 E-value=0.0005 Score=65.59 Aligned_cols=103 Identities=18% Similarity=0.100 Sum_probs=65.7
Q ss_pred cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHH--
Q 026812 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARES-- 199 (232)
Q Consensus 123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~-- 199 (232)
+|.|....+..|-.--...|....... .....+||++|+|.|-+...+|... ..+|++||.++.+++.|+++
T Consensus 121 ~LDG~~Q~se~DE~iYHE~Lvhp~m~~-----h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~ 195 (374)
T PRK01581 121 YLDKQLQFSSVDEQIYHEALVHPIMSK-----VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPE 195 (374)
T ss_pred EECCeeccccccHHHHHHHHHHHHHHh-----CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccc
Confidence 677888888888443344444432111 1234699999999999988866542 47999999999999999973
Q ss_pred hCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812 200 LAPENHMAPDMHKATNFFCVPLQVITNI--IQYH 231 (232)
Q Consensus 200 l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD 231 (232)
+.......-+..|+ ++++...-+|-+. .+||
T Consensus 196 L~~~~~~~~~DpRV-~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 196 LVSLNKSAFFDNRV-NVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred cchhccccCCCCce-EEEECcHHHHHHhcCCCcc
Confidence 22111001123566 6666665566433 3677
No 114
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.26 E-value=0.00032 Score=65.61 Aligned_cols=59 Identities=20% Similarity=0.143 Sum_probs=47.1
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI 224 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF 224 (232)
.++||++||+|.+|. .|++.+.+|..||.++.+++.|++|+..... .++ +|++..+.+|
T Consensus 208 ~~vLDl~~G~G~~sl-~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~-----~~v-~~~~~d~~~~ 266 (362)
T PRK05031 208 GDLLELYCGNGNFTL-ALARNFRRVLATEISKPSVAAAQYNIAANGI-----DNV-QIIRMSAEEF 266 (362)
T ss_pred CeEEEEeccccHHHH-HHHhhCCEEEEEECCHHHHHHHHHHHHHhCC-----CcE-EEEECCHHHH
Confidence 469999999999998 4788899999999999999999999754211 123 5777776665
No 115
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.26 E-value=0.00019 Score=62.83 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=46.4
Q ss_pred cceeeeccCCccccchHHHHhhccC---eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEE-ecCCCccCCCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQVITNIIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~---~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~-vgLQdF~Pe~~YD 231 (232)
+..++||+|||+|=.| .+|++++. .|..||..+.+++.|++++..... ..| .+.+ -+.+-|.+...||
T Consensus 72 pg~~VLeIGtGsGY~a-Alla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-----~nv-~~~~gdg~~g~~~~apfD 143 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQA-ALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-----DNV-EVVVGDGSEGWPEEAPFD 143 (209)
T ss_dssp TT-EEEEES-TTSHHH-HHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-----HSE-EEEES-GGGTTGGG-SEE
T ss_pred CCCEEEEecCCCcHHH-HHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-----Cce-eEEEcchhhccccCCCcC
Confidence 4579999999999999 47898864 578999999999999999975321 223 2333 3344454444676
No 116
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.24 E-value=0.00037 Score=65.97 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=47.2
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI 224 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF 224 (232)
..++||+|||+|.+|.. |++.+.+|..||.++.+++.|++|+..... ..+ +|++..+.++
T Consensus 293 ~~~vLDl~cG~G~~sl~-la~~~~~V~~vE~~~~av~~a~~n~~~~~~-----~nv-~~~~~d~~~~ 352 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLP-LAKQAKSVVGIEVVPESVEKAQQNAELNGI-----ANV-EFLAGTLETV 352 (431)
T ss_pred CCEEEEcCCCcCHHHHH-HHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-----Cce-EEEeCCHHHH
Confidence 35899999999999987 677788999999999999999999854211 223 5677766554
No 117
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.20 E-value=0.00091 Score=64.74 Aligned_cols=66 Identities=15% Similarity=0.063 Sum_probs=47.9
Q ss_pred eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-C-CCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-N-IIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-P-e~~YD 231 (232)
.++||+|||+|.++..+.... ..+|.+||.++.+++.|++|+... ..++ ++.+..+.+.. | ..+||
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~------g~rV-~fi~gDl~e~~l~~~~~FD 321 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL------GARV-EFAHGSWFDTDMPSEGKWD 321 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCcE-EEEEcchhccccccCCCcc
Confidence 489999999999998755443 368999999999999999998542 1234 67776664432 2 23565
No 118
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00041 Score=63.12 Aligned_cols=42 Identities=31% Similarity=0.287 Sum_probs=37.3
Q ss_pred eeeccCCccccchHHHHhhccC--eeEEecCcHHHHHHHHHHhCC
Q 026812 160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 160 rALDcGAGIGRVTk~lLl~~f~--~VDLVEPv~~Fle~Are~l~~ 202 (232)
+|||+|||+|-++..+ +..+. .|+++|.|+.-++.|++|...
T Consensus 113 ~ilDlGTGSG~iai~l-a~~~~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 113 RILDLGTGSGAIAIAL-AKEGPDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred cEEEecCChHHHHHHH-HhhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence 7999999999999984 55554 999999999999999999865
No 119
>PRK04266 fibrillarin; Provisional
Probab=97.18 E-value=0.00091 Score=59.07 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=36.4
Q ss_pred cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~ 201 (232)
+..++||+|||+|.+|.. |++.+ .+|.+||.++.|++.+.++..
T Consensus 72 ~g~~VlD~G~G~G~~~~~-la~~v~~g~V~avD~~~~ml~~l~~~a~ 117 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSH-VSDIVEEGVVYAVEFAPRPMRELLEVAE 117 (226)
T ss_pred CCCEEEEEccCCCHHHHH-HHHhcCCCeEEEEECCHHHHHHHHHHhh
Confidence 346899999999999987 56655 489999999999998876653
No 120
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.16 E-value=0.00026 Score=66.12 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=47.2
Q ss_pred eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225 (232)
Q Consensus 160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~ 225 (232)
++||+|||+|.+|. .|++.+.+|..||.++.+++.|++|+..... ..+ .|++..+.+|.
T Consensus 200 ~vlDl~~G~G~~sl-~la~~~~~v~~vE~~~~av~~a~~n~~~~~~-----~~v-~~~~~d~~~~~ 258 (353)
T TIGR02143 200 DLLELYCGNGNFSL-ALAQNFRRVLATEIAKPSVNAAQYNIAANNI-----DNV-QIIRMSAEEFT 258 (353)
T ss_pred cEEEEeccccHHHH-HHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-----CcE-EEEEcCHHHHH
Confidence 69999999999998 5888889999999999999999999855211 123 57777766654
No 121
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.14 E-value=0.00052 Score=61.72 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=51.3
Q ss_pred eeeeccCCccccchHHHHh-hccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl-~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD 231 (232)
.-+|++|||+|+-=+. +- .-.+.|+.+||+++|-+-|...+++..+ .++..|.....++.. ++..||
T Consensus 78 ~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~-----~~~~~fvva~ge~l~~l~d~s~D 147 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKP-----LQVERFVVADGENLPQLADGSYD 147 (252)
T ss_pred cceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccC-----cceEEEEeechhcCcccccCCee
Confidence 4589999999998875 33 2356999999999999999888776433 456567777777766 566777
No 122
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.11 E-value=0.00086 Score=59.66 Aligned_cols=42 Identities=26% Similarity=0.254 Sum_probs=34.1
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHH-HHH
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARE 198 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~-Are 198 (232)
...++||+|||+|-+|..++.....+|.+||+++.++.. +++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~ 117 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ 117 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc
Confidence 345899999999999987665547899999999977764 444
No 123
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.11 E-value=0.0015 Score=62.31 Aligned_cols=61 Identities=15% Similarity=0.044 Sum_probs=45.8
Q ss_pred ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI 224 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF 224 (232)
..++||+|||+|..|..++... -.+|.+||.++.+++.+++++..... ..| ++.+..+.++
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-----~~v-~~~~~D~~~~ 313 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-----TNI-ETKALDARKV 313 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeE-EEEeCCcccc
Confidence 3589999999999998865543 36899999999999999999855211 122 5666666554
No 124
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0011 Score=61.65 Aligned_cols=67 Identities=22% Similarity=0.170 Sum_probs=51.1
Q ss_pred CCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 127 FGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 127 f~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
|+.=+..--..+-.+|.++.. +..++||+|||+|-.+.-.+.-....|-.+|.++.-++.|++|...
T Consensus 141 FGTG~HpTT~lcL~~Le~~~~---------~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~ 207 (300)
T COG2264 141 FGTGTHPTTSLCLEALEKLLK---------KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARL 207 (300)
T ss_pred cCCCCChhHHHHHHHHHHhhc---------CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHH
Confidence 554333333455566666544 2468999999999999987666678899999999999999999865
No 125
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.10 E-value=0.00096 Score=61.54 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=49.1
Q ss_pred CcceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYHS 232 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD~ 232 (232)
.+..++||+|||=|-.+.. +++.+ .+|+.|..|+...+.+++.+..... ..+| ++.-.+..+|.. +||.
T Consensus 71 ~~G~~lLDiGCGWG~l~~~-aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl----~~~v-~v~l~d~rd~~e--~fDr 140 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIY-AAEEYGVTVVGVTLSEEQLAYAEKRIAARGL----EDNV-EVRLQDYRDFEE--PFDR 140 (283)
T ss_pred CCCCEEEEeCCChhHHHHH-HHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC----Cccc-EEEecccccccc--ccce
Confidence 3457999999999999987 56665 8999999999999999997755211 1222 444444444443 4873
No 126
>PHA01634 hypothetical protein
Probab=97.09 E-value=0.00066 Score=57.08 Aligned_cols=44 Identities=18% Similarity=0.018 Sum_probs=41.5
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.+++||||+||--+..|+++..+.|-++||+++..+.+++++.-
T Consensus 30 KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 30 RTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred CEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 58999999999999999999999999999999999999998754
No 127
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.08 E-value=0.0015 Score=62.18 Aligned_cols=67 Identities=19% Similarity=0.089 Sum_probs=48.2
Q ss_pred ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc---CCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT---NIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~---Pe~~YD 231 (232)
..++||+|||+|..|..++...- .+|.++|.++.+++.+++++.... -.+ ++.+....+.. +...||
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g------~~~-~~~~~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG------LKA-TVIVGDARDPAQWWDGQPFD 315 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC------CCe-EEEEcCcccchhhcccCCCC
Confidence 46899999999999988655432 499999999999999999985521 123 56666665432 233566
No 128
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.07 E-value=0.0014 Score=62.80 Aligned_cols=68 Identities=9% Similarity=-0.007 Sum_probs=48.5
Q ss_pred ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD 231 (232)
..+|||+|||+|..|.+++... -.+|.++|.++++++.+++++..... .. .++.+....++. ....||
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~-v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-----SS-IEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----Ce-EEEEECchhhhhhhhhccCC
Confidence 4589999999999998865443 35899999999999999999865211 11 256666655543 123565
No 129
>PLN03075 nicotianamine synthase; Provisional
Probab=97.07 E-value=0.002 Score=59.69 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=52.9
Q ss_pred cceeeeccCCccccchHHHHhh-cc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIR-YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~-~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD 231 (232)
...+|||+|||.|.+|--+|+. ++ .+|+-+|.++.+++.|++++...+.+ ..+| +|.+..+.+..+. .+||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL---~~rV-~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL---SKRM-FFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc---cCCc-EEEECchhhcccccCCcC
Confidence 3468999999999888766663 44 47999999999999999998542221 2455 8888888776533 5787
No 130
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0011 Score=60.36 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=39.1
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~ 201 (232)
...+|++|+|+|-+|+. |++..+.|.+||.++.+++.+++.+.
T Consensus 31 ~d~VlEIGpG~GaLT~~-Ll~~~~~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 31 GDNVLEIGPGLGALTEP-LLERAARVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred CCeEEEECCCCCHHHHH-HHhhcCeEEEEEeCHHHHHHHHHhcc
Confidence 57899999999999997 66778899999999999999999875
No 131
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.02 E-value=0.0022 Score=61.28 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=45.1
Q ss_pred ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI 224 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF 224 (232)
..++||+|||+|..|..+....- .+|.++|.++.+++.+++++..... ..| .+.+....++
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v-~~~~~D~~~~ 315 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-----KSI-KILAADSRNL 315 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CeE-EEEeCChhhc
Confidence 46899999999999987544332 4899999999999999999865211 122 5666666654
No 132
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.02 E-value=0.00084 Score=57.50 Aligned_cols=62 Identities=19% Similarity=0.022 Sum_probs=48.9
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI 224 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF 224 (232)
..++||++||+|.++..++.+...+|++||.++..++.+++|+..... ..++ ++++....+|
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~-~~~~~D~~~~ 111 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS----GEQA-EVVRNSALRA 111 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC----cccE-EEEehhHHHH
Confidence 358999999999999998888778999999999999999998855211 1233 6777776544
No 133
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.96 E-value=0.0019 Score=58.16 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=44.6
Q ss_pred cceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV 223 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd 223 (232)
+..++||+|||.|.++..++.+.- -+|.++|. +.+++.+++++..... .++| ++.+..+.+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv-~~~~~d~~~ 210 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV----ADRM-RGIAVDIYK 210 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc----cceE-EEEecCccC
Confidence 346899999999999998665542 47999996 7899999988755221 2344 667766654
No 134
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.96 E-value=0.0013 Score=58.75 Aligned_cols=45 Identities=11% Similarity=-0.057 Sum_probs=37.7
Q ss_pred ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
..++||+|||+|..|..+...+ -.+|.+||.++.+++.+++++..
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~ 118 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR 118 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 4689999999999998754433 24899999999999999999865
No 135
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=96.94 E-value=0.0014 Score=57.85 Aligned_cols=76 Identities=16% Similarity=0.099 Sum_probs=53.2
Q ss_pred hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcc
Q 026812 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (232)
Q Consensus 137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~ 214 (232)
....||..|... .+..++||+|+|+|-.|..|..-. -.+|..+|.++++++.|+++++.... .++|
T Consensus 55 ~~g~~L~~l~~~-------~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i- 122 (234)
T PLN02781 55 DEGLFLSMLVKI-------MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKI- 122 (234)
T ss_pred HHHHHHHHHHHH-------hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-
Confidence 346677666542 234689999999999887654433 35999999999999999999976432 2444
Q ss_pred eEEEecCCCc
Q 026812 215 NFFCVPLQVI 224 (232)
Q Consensus 215 n~~~vgLQdF 224 (232)
++++....++
T Consensus 123 ~~~~gda~~~ 132 (234)
T PLN02781 123 NFIQSDALSA 132 (234)
T ss_pred EEEEccHHHH
Confidence 6666555443
No 136
>PLN02823 spermine synthase
Probab=96.90 E-value=0.0024 Score=59.87 Aligned_cols=103 Identities=13% Similarity=0.036 Sum_probs=64.7
Q ss_pred ccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHh
Q 026812 122 GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESL 200 (232)
Q Consensus 122 GMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l 200 (232)
=+|.|..+.+..|-..=..+|..+..... ....+||-+|+|.|.+++.+|... ..+|++||.++..++.|++++
T Consensus 73 L~lDg~~qs~~~de~~YhE~l~h~~l~~~-----~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~ 147 (336)
T PLN02823 73 LIIDGKMQSAEADEFVYHESLVHPALLHH-----PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHL 147 (336)
T ss_pred EEECCccccccchHHHHHHHHHhHHHhhC-----CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhc
Confidence 36777777666663322344444322111 234689999999999999887753 589999999999999999998
Q ss_pred CCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812 201 APENHMAPDMHKATNFFCVPLQVIT--NIIQYH 231 (232)
Q Consensus 201 ~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD 231 (232)
.... .+-+..|+ ++++..--+|- ...+||
T Consensus 148 ~~~~-~~~~dprv-~v~~~Da~~~L~~~~~~yD 178 (336)
T PLN02823 148 TVNR-EAFCDKRL-ELIINDARAELEKRDEKFD 178 (336)
T ss_pred cccc-ccccCCce-EEEEChhHHHHhhCCCCcc
Confidence 5311 01123555 55554333332 123566
No 137
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.81 E-value=0.002 Score=56.37 Aligned_cols=47 Identities=21% Similarity=0.151 Sum_probs=39.3
Q ss_pred CcceeeeccCCccccchHHHHhh-ccCeeEEecCcHHHHHHHHHHhCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~-~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.+..+.+|+|||+|.||..+..- -..+|.++|-+++.++..++|++.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~ 80 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAAR 80 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence 34579999999999999986521 247999999999999999998865
No 138
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.77 E-value=0.0047 Score=56.70 Aligned_cols=68 Identities=12% Similarity=-0.163 Sum_probs=49.3
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD 231 (232)
+..++||.|||+|.++.. ++....+|..+|.++.|++.|++|+..... ..+ .+++..++++.. ...||
T Consensus 182 ~g~~vLDp~cGtG~~lie-aa~~~~~v~g~Di~~~~~~~a~~nl~~~g~-----~~i-~~~~~D~~~l~~~~~~~D 250 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIE-AGLMGAKVIGCDIDWKMVAGARINLEHYGI-----EDF-FVKRGDATKLPLSSESVD 250 (329)
T ss_pred CcCEEEECCCCCCHHHHH-HHHhCCeEEEEcCCHHHHHHHHHHHHHhCC-----CCC-eEEecchhcCCcccCCCC
Confidence 345899999999999876 444567999999999999999999855211 112 567777766543 23555
No 139
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.74 E-value=0.0017 Score=59.22 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=35.9
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHH
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~ 199 (232)
..++|+|||.| -|-..++.+|++|.++|+++.||+.|++.
T Consensus 35 ~~a~DvG~G~G-qa~~~iae~~k~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 35 RLAWDVGTGNG-QAARGIAEHYKEVIATDVSEAMLKVAKKH 74 (261)
T ss_pred ceEEEeccCCC-cchHHHHHhhhhheeecCCHHHHHHhhcC
Confidence 38999999999 66667999999999999999999999874
No 140
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.74 E-value=0.0022 Score=59.82 Aligned_cols=47 Identities=17% Similarity=0.056 Sum_probs=38.9
Q ss_pred cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPEN 204 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~ 204 (232)
...++||+|||.|-|.. +|+.. .-+|+++|.++..++.|++++...|
T Consensus 114 ~~~~vLDIGtGag~I~~-lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np 162 (321)
T PRK11727 114 ANVRVLDIGVGANCIYP-LIGVHEYGWRFVGSDIDPQALASAQAIISANP 162 (321)
T ss_pred CCceEEEecCCccHHHH-HHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence 44689999999998885 45443 2589999999999999999998764
No 141
>PRK06922 hypothetical protein; Provisional
Probab=96.73 E-value=0.0021 Score=65.35 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=36.3
Q ss_pred ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~ 201 (232)
..++||+|||+|.++.. |++.+ .+|..||.++.|++.|++++.
T Consensus 419 g~rVLDIGCGTG~ls~~-LA~~~P~~kVtGIDIS~~MLe~Ararl~ 463 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDM-IEEETEDKRIYGIDISENVIDTLKKKKQ 463 (677)
T ss_pred CCEEEEeCCCCCHHHHH-HHHhCCCCEEEEEECCHHHHHHHHHHhh
Confidence 36899999999999975 55544 599999999999999998753
No 142
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.60 E-value=0.013 Score=52.19 Aligned_cols=110 Identities=21% Similarity=0.263 Sum_probs=78.4
Q ss_pred hhhhhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCc-ceeeeccCCccccchHHHHhhc
Q 026812 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQ-HLVALDCGSGIGRITKNLLIRY 179 (232)
Q Consensus 101 ~~~~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~-~~rALDcGAGIGRVTk~lLl~~ 179 (232)
.+-..|.+-..=|+. +.| ...+++.+-.-.+-||+++...... .. ..+++|+|+|-|==+.+|-+-.
T Consensus 22 ~~l~~Y~~lL~~wN~---~~N-----Lt~~~~~~e~~~rHilDSl~~~~~~----~~~~~~~~DIGSGaGfPGipLAI~~ 89 (215)
T COG0357 22 EKLEAYVELLLKWNK---AYN-----LTAIRDPEELWQRHILDSLVLLPYL----DGKAKRVLDIGSGAGFPGIPLAIAF 89 (215)
T ss_pred HHHHHHHHHHHHhhH---hcC-----CCCCCCHHHHHHHHHHHHhhhhhcc----cccCCEEEEeCCCCCCchhhHHHhc
Confidence 334568888888886 444 5556666545668888888653221 11 4699999999999888733111
Q ss_pred -cCeeEEecCcHH---HHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCC-CC
Q 026812 180 -FNEVDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQ-YH 231 (232)
Q Consensus 180 -f~~VDLVEPv~~---Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~-YD 231 (232)
-.+|++||+..+ |++.+.+.++-. .+ .+++.-.++|.++.+ ||
T Consensus 90 p~~~vtLles~~Kk~~FL~~~~~eL~L~--------nv-~i~~~RaE~~~~~~~~~D 137 (215)
T COG0357 90 PDLKVTLLESLGKKIAFLREVKKELGLE--------NV-EIVHGRAEEFGQEKKQYD 137 (215)
T ss_pred cCCcEEEEccCchHHHHHHHHHHHhCCC--------Ce-EEehhhHhhcccccccCc
Confidence 146999999975 999999888552 22 889999999998776 87
No 143
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.54 E-value=0.0074 Score=57.46 Aligned_cols=44 Identities=25% Similarity=0.232 Sum_probs=37.9
Q ss_pred ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~ 202 (232)
..+|||+|||+|-.|..++ ... .+|.++|.++++++.+++++..
T Consensus 239 g~~VLDlcag~G~kt~~la-~~~~~~~v~a~D~~~~~l~~~~~n~~r 284 (426)
T TIGR00563 239 EETILDACAAPGGKTTHIL-ELAPQAQVVALDIHEHRLKRVYENLKR 284 (426)
T ss_pred CCeEEEeCCCccHHHHHHH-HHcCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4689999999999998754 443 5999999999999999999865
No 144
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.51 E-value=0.0049 Score=57.60 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=42.4
Q ss_pred eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcc--eEEEecCCCc
Q 026812 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT--NFFCVPLQVI 224 (232)
Q Consensus 160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~--n~~~vgLQdF 224 (232)
.+||.=||+|.+|.. |++.+.+|..||.++..++.|++|+.. .++. +|++...++|
T Consensus 199 ~vlDlycG~G~fsl~-la~~~~~V~gvE~~~~av~~A~~Na~~--------N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLP-LAKKAKKVIGVEIVEEAVEDARENAKL--------NGIDNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHH-HHCCSSEEEEEES-HHHHHHHHHHHHH--------TT--SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHH-HHhhCCeEEEeeCCHHHHHHHHHHHHH--------cCCCcceEEEeeccch
Confidence 699999999999987 799999999999999999999999865 2333 5566555554
No 145
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.51 E-value=0.0034 Score=54.82 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=41.2
Q ss_pred CcceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.+..-+|+.|+|+|-+|+.+|.+.. +.+.++|-+..|+..+.+....
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~ 95 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG 95 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC
Confidence 3456899999999999999999986 7899999999999999886633
No 146
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.50 E-value=0.0028 Score=61.56 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=47.9
Q ss_pred ceeeeccCCccccchHHHHhhc------cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~------f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
...|||+|||.|-++.- .++. ..+|-+||-++..+..+++.+....| .++| ++++..+++|.++++.|
T Consensus 187 ~~vVldVGAGrGpL~~~-al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V-~vi~~d~r~v~lpekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMF-ALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKV-TVIHGDMREVELPEKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHH-HHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTE-EEEES-TTTSCHSS-EE
T ss_pred ceEEEEeCCCccHHHHH-HHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeE-EEEeCcccCCCCCCcee
Confidence 46899999999999853 3333 36999999999888777655433333 2555 99999999999877665
No 147
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.49 E-value=0.0052 Score=57.15 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=42.6
Q ss_pred CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~ 205 (232)
+++..+|+||.|+|-.|.- |+...++|-++|.++.|+.++.+...+.|.
T Consensus 57 k~tD~VLEvGPGTGnLT~~-lLe~~kkVvA~E~Dprmvael~krv~gtp~ 105 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVK-LLEAGKKVVAVEIDPRMVAELEKRVQGTPK 105 (315)
T ss_pred CCCCEEEEeCCCCCHHHHH-HHHhcCeEEEEecCcHHHHHHHHHhcCCCc
Confidence 4567999999999999987 556678999999999999999998877653
No 148
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.31 E-value=0.0071 Score=58.07 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=36.3
Q ss_pred eeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~ 202 (232)
..+||+|||.|+++.. |+... ..|..||..+.+++.|.+.+..
T Consensus 124 p~vLEIGcGsG~~ll~-lA~~~P~~~~iGIEI~~~~i~~a~~ka~~ 168 (390)
T PRK14121 124 KILIEIGFGSGRHLLY-QAKNNPNKLFIGIEIHTPSIEQVLKQIEL 168 (390)
T ss_pred CeEEEEcCcccHHHHH-HHHhCCCCCEEEEECCHHHHHHHHHHHHH
Confidence 4799999999999988 45543 5899999999999999877644
No 149
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.29 E-value=0.0025 Score=58.20 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=38.7
Q ss_pred CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHH
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are 198 (232)
..+.++||+|||+|-.... |-.+.++++-||.|+.|+++|.+
T Consensus 124 g~F~~~lDLGCGTGL~G~~-lR~~a~~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEA-LRDMADRLTGVDISENMLAKAHE 165 (287)
T ss_pred CccceeeecccCcCcccHh-HHHHHhhccCCchhHHHHHHHHh
Confidence 3488999999999999987 78889999999999999999987
No 150
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.26 E-value=0.0079 Score=56.39 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=49.7
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHH---HHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA---RESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~A---re~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
...+|||+|||.|=.+-.|+....+.|-.+||+..|+-+. ++.++.. ....+...++++.-....||
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~--------~~~~~lplgvE~Lp~~~~FD 184 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD--------PPVFELPLGVEDLPNLGAFD 184 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC--------ccEEEcCcchhhccccCCcC
Confidence 3469999999999999999988889999999999998874 3444321 11123335888776655777
No 151
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.25 E-value=0.0076 Score=52.23 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=26.8
Q ss_pred ceeeeccCCccccchHHHHhhcc--CeeEEecCcH
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVS 190 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~ 190 (232)
..++||+|||+|.+|..++.... .+|.+||+++
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 35899999999999987554432 5899999987
No 152
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.23 E-value=0.012 Score=52.89 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=32.8
Q ss_pred cceeeeccCCcccc----chHHHHhhcc-------CeeEEecCcHHHHHHHHHHh
Q 026812 157 QHLVALDCGSGIGR----ITKNLLIRYF-------NEVDLLEPVSHFLDAARESL 200 (232)
Q Consensus 157 ~~~rALDcGAGIGR----VTk~lLl~~f-------~~VDLVEPv~~Fle~Are~l 200 (232)
+..+|||+|||+|- ++.. |+..+ -+|.++|+++.+++.|++.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~-l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAML-LAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHH-HHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 34799999999997 4433 22221 37999999999999999753
No 153
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.20 E-value=0.003 Score=52.93 Aligned_cols=36 Identities=14% Similarity=0.009 Sum_probs=28.3
Q ss_pred cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHH
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHF 192 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~F 192 (232)
+..++||+|||+|.+|..++.... .+|.+||+++.+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 456899999999999987554432 369999999854
No 154
>PRK04148 hypothetical protein; Provisional
Probab=96.10 E-value=0.0099 Score=49.35 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=35.3
Q ss_pred eeeeccCCcccc-chHHHHhhccCeeEEecCcHHHHHHHHHH
Q 026812 159 LVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (232)
Q Consensus 159 ~rALDcGAGIGR-VTk~lLl~~f~~VDLVEPv~~Fle~Are~ 199 (232)
.++||+|+|.|. |+.. |.+...+|.+||.++..++.|+++
T Consensus 18 ~kileIG~GfG~~vA~~-L~~~G~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 18 KKIVELGIGFYFKVAKK-LKESGFDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred CEEEEEEecCCHHHHHH-HHHCCCEEEEEECCHHHHHHHHHh
Confidence 589999999995 9976 667777999999999999999885
No 155
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.01 E-value=0.015 Score=53.77 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=47.8
Q ss_pred eeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812 159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~ 225 (232)
..+|||+||-|.-|..+|...- .+|..+|.++.+++.|++.+.. ..++ .+++..+.+|.
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri-~~i~~~f~~l~ 81 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRF-TLVHGNFSNLK 81 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcE-EEEeCCHHHHH
Confidence 5899999999999998776642 5899999999999999988743 1355 77888877764
No 156
>PLN02672 methionine S-methyltransferase
Probab=95.98 E-value=0.0072 Score=64.49 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=57.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCC--
Q 026812 130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHM-- 206 (232)
Q Consensus 130 vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~-- 206 (232)
|++. .+..|+..|...+ . ..-+..++||+|||+|.++..+....- .+|.+||.++..++.|++|+......
T Consensus 97 IPRp---eTE~lve~L~~~~--~-~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~ 170 (1082)
T PLN02672 97 IPED---WSFTFYEGLNRHP--D-SIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDD 170 (1082)
T ss_pred cCch---hHHHHHHHHHhcc--c-ccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccc
Confidence 4554 4666666643211 0 001235899999999999987544432 58999999999999999998542100
Q ss_pred C---------CCCCCcceEEEecCCCccC
Q 026812 207 A---------PDMHKATNFFCVPLQVITN 226 (232)
Q Consensus 207 ~---------~~~~rv~n~~~vgLQdF~P 226 (232)
+ ....+| +|++..+-+..+
T Consensus 171 ~~~~~~~~~~~l~~rV-~f~~sDl~~~~~ 198 (1082)
T PLN02672 171 GLPVYDGEGKTLLDRV-EFYESDLLGYCR 198 (1082)
T ss_pred cccccccccccccccE-EEEECchhhhcc
Confidence 0 001345 788888765443
No 157
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=95.94 E-value=0.024 Score=52.48 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=50.2
Q ss_pred cceeeeccCCccccchHHHHhhcc-------CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-C
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-I 228 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f-------~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~ 228 (232)
...++||+++|+|=+|-.+|-+.- .+|+++|++++||.++++.....+.- ..+...+.|..-++...+ .
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---ASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---cCCceEEEeCCcccCCCCCC
Confidence 347999999999999998777663 57999999999999998765333321 122225666566665533 2
Q ss_pred CCC
Q 026812 229 QYH 231 (232)
Q Consensus 229 ~YD 231 (232)
.||
T Consensus 177 s~D 179 (296)
T KOG1540|consen 177 SFD 179 (296)
T ss_pred cce
Confidence 444
No 158
>PLN02476 O-methyltransferase
Probab=95.90 E-value=0.015 Score=53.37 Aligned_cols=73 Identities=16% Similarity=0.054 Sum_probs=51.2
Q ss_pred hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcc
Q 026812 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (232)
Q Consensus 137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~ 214 (232)
....||..|... .+..++||+|+|+|-.|..|..-. -.+|..+|.++++.+.|+++++.... .++|
T Consensus 105 ~~g~lL~~L~~~-------~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl----~~~I- 172 (278)
T PLN02476 105 DQAQLLAMLVQI-------LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV----SHKV- 172 (278)
T ss_pred HHHHHHHHHHHh-------cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-
Confidence 345666665542 234689999999999998754422 24799999999999999999976432 2455
Q ss_pred eEEEecC
Q 026812 215 NFFCVPL 221 (232)
Q Consensus 215 n~~~vgL 221 (232)
++..-..
T Consensus 173 ~li~GdA 179 (278)
T PLN02476 173 NVKHGLA 179 (278)
T ss_pred EEEEcCH
Confidence 5555443
No 159
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.76 E-value=0.0082 Score=57.06 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=48.0
Q ss_pred eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD 231 (232)
.++||++||+|-++..+.... ..+|.++|.++..++.+++|+..... ..+ ++++....++-+ ..+||
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-----~~~-~v~~~Da~~~l~~~~~fD 127 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-----ENE-KVFNKDANALLHEERKFD 127 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----Cce-EEEhhhHHHHHhhcCCCC
Confidence 479999999999998865443 35899999999999999999854211 111 467776655433 33565
No 160
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.71 E-value=0.021 Score=50.21 Aligned_cols=41 Identities=20% Similarity=0.017 Sum_probs=33.4
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHH
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are 198 (232)
..||||+|||-|..-..|....--++--||.++.-+..+.+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~ 54 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA 54 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH
Confidence 47999999999999987555455577889999998887766
No 161
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.66 E-value=0.025 Score=51.99 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=53.6
Q ss_pred ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC--CCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII--QYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~--~YD 231 (232)
..+||=+|-|-|..++.+|.+. .++|++||.++..++.+++++.... .+.+..|+ ++....-.+|-... +||
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~-~~~~dpRv-~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPS-GGADDPRV-EIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcc-cccCCCce-EEEeccHHHHHHhCCCcCC
Confidence 3599999999999999988776 5999999999999999999996633 22334565 55555544454322 565
No 162
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.64 E-value=0.05 Score=48.57 Aligned_cols=67 Identities=9% Similarity=-0.088 Sum_probs=48.4
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCC-------CCCCCcceEEEecCCCccC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA-------PDMHKATNFFCVPLQVITN 226 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~-------~~~~rv~n~~~vgLQdF~P 226 (232)
..|||+.|||-|+....|..+.+ +|..||.++.-++.+.+.....+.+. -....| +++|..+=++.+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i-~~~~gD~f~l~~ 117 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI-EIYVADIFNLPK 117 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce-EEEEccCcCCCc
Confidence 35999999999999998666666 79999999999999866322111000 011344 889999988865
No 163
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.56 E-value=0.0074 Score=54.68 Aligned_cols=75 Identities=25% Similarity=0.342 Sum_probs=53.3
Q ss_pred ccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHH
Q 026812 117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA 196 (232)
Q Consensus 117 eaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~A 196 (232)
..++||||| ++.+-- -.-..|-+-|.+++.. -...+.+.||+|||-|-||+. +++.|++|=+-|.+..|.+.+
T Consensus 78 ~TdING~lg-rGsMFi---fSe~QF~klL~i~~p~--w~~~~~~lLDlGAGdGeit~~-m~p~feevyATElS~tMr~rL 150 (288)
T KOG3987|consen 78 QTDINGFLG-RGSMFI---FSEEQFRKLLVIGGPA--WGQEPVTLLDLGAGDGEITLR-MAPTFEEVYATELSWTMRDRL 150 (288)
T ss_pred hhccccccc-cCceEE---ecHHHHHHHHhcCCCc--cCCCCeeEEeccCCCcchhhh-hcchHHHHHHHHhhHHHHHHH
Confidence 357899996 343211 1123455555554322 123457999999999999997 689999999999999999988
Q ss_pred HH
Q 026812 197 RE 198 (232)
Q Consensus 197 re 198 (232)
+.
T Consensus 151 ~k 152 (288)
T KOG3987|consen 151 KK 152 (288)
T ss_pred hh
Confidence 75
No 164
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.55 E-value=0.018 Score=49.36 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=38.7
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
..++||+=||+|.++...|++.+.+|..||.+.+-+..+++|+..
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~ 87 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEK 87 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999865
No 165
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=95.46 E-value=0.025 Score=49.46 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=45.9
Q ss_pred ceeeeccCCccccchHHHHh-hccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl-~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
...+||.-||||-.|.+++. .....|-++|.++.-++-+++++..... .++| .+++....+|.+...+|
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i-~~~~~D~~~~~~~~~~d 171 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV----ENRI-EVINGDAREFLPEGKFD 171 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-----TTTE-EEEES-GGG---TT-EE
T ss_pred ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC----CCeE-EEEcCCHHHhcCccccC
Confidence 46899999999999998554 1578999999999999999999866432 2333 66777777776644444
No 166
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=95.38 E-value=0.023 Score=49.67 Aligned_cols=72 Identities=17% Similarity=0.078 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceE
Q 026812 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (232)
Q Consensus 139 ~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~ 216 (232)
..||..|... .+..+||++|+++|--|..|...+ -.+|+.||+++.+.+.|++++..... .++| ++
T Consensus 34 g~lL~~l~~~-------~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I-~~ 101 (205)
T PF01596_consen 34 GQLLQMLVRL-------TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRI-EV 101 (205)
T ss_dssp HHHHHHHHHH-------HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGE-EE
T ss_pred HHHHHHHHHh-------cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcE-EE
Confidence 4677766541 234689999999999998865443 25999999999999999999876322 2455 56
Q ss_pred EEecCC
Q 026812 217 FCVPLQ 222 (232)
Q Consensus 217 ~~vgLQ 222 (232)
....-.
T Consensus 102 ~~gda~ 107 (205)
T PF01596_consen 102 IEGDAL 107 (205)
T ss_dssp EES-HH
T ss_pred EEeccH
Confidence 555433
No 167
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=95.09 E-value=0.044 Score=50.18 Aligned_cols=47 Identities=28% Similarity=0.314 Sum_probs=39.5
Q ss_pred CcceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.+..||||.|.|.|-.|-.|+--+. .+|..+|.-+.|.+.|++|+..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~ 141 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE 141 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH
Confidence 4567999999999999976443232 6999999999999999999966
No 168
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.07 E-value=0.024 Score=50.57 Aligned_cols=75 Identities=20% Similarity=0.128 Sum_probs=54.9
Q ss_pred cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~ 201 (232)
+|.|-..+++.|-......|..+..... ....+||=+|.|-|.++..+|..- ..+||+||.++..++.|++++.
T Consensus 47 ~ldg~~q~~e~de~~y~e~l~h~~~~~~-----~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~ 121 (246)
T PF01564_consen 47 VLDGDVQLSERDEFIYHEMLVHPPLLLH-----PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFP 121 (246)
T ss_dssp EETTEEEEETTTHHHHHHHHHHHHHHHS-----SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTH
T ss_pred EECCeEEEEEechHHHHHHHhhhHhhcC-----CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhch
Confidence 4667677788886666666766543211 245799999999999999866443 4899999999999999999875
Q ss_pred C
Q 026812 202 P 202 (232)
Q Consensus 202 ~ 202 (232)
.
T Consensus 122 ~ 122 (246)
T PF01564_consen 122 E 122 (246)
T ss_dssp H
T ss_pred h
Confidence 3
No 169
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=95.05 E-value=0.073 Score=46.88 Aligned_cols=70 Identities=14% Similarity=0.018 Sum_probs=47.7
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCC-------CCCCCcceEEEecCCCccCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA-------PDMHKATNFFCVPLQVITNII 228 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~-------~~~~rv~n~~~vgLQdF~Pe~ 228 (232)
+..+||.-|||-|.....|..+.+ +|..||.++.-++.+.+.-...+... ....+| +|+|..+=++.++.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i-~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI-TIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE-EEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce-EEEEcccccCChhh
Confidence 346899999999999987655555 99999999999999843221111100 012344 88999998888765
No 170
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.00 E-value=0.027 Score=50.96 Aligned_cols=60 Identities=20% Similarity=0.144 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc---cCeeEEecCcHHHHHHHHHHhCCC
Q 026812 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPE 203 (232)
Q Consensus 139 ~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~---f~~VDLVEPv~~Fle~Are~l~~~ 203 (232)
..-|.+|...... -.+.++||+|||+|..+-. +... ..++.+||+++.|++.++..+...
T Consensus 19 ~~vl~El~~r~p~----f~P~~vLD~GsGpGta~wA-a~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 19 YRVLSELRKRLPD----FRPRSVLDFGSGPGTALWA-AREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred HHHHHHHHHhCcC----CCCceEEEecCChHHHHHH-HHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 4456666553211 2345899999999987754 2333 478999999999999998876553
No 171
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=94.97 E-value=0.072 Score=47.55 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=50.5
Q ss_pred hhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCC
Q 026812 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPE 203 (232)
Q Consensus 136 ~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~ 203 (232)
...-.||..|... .+..++|++|.++|=-|..|+...- .++..+|.++++.+.|++|++..
T Consensus 45 ~e~g~~L~~L~~~-------~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a 107 (219)
T COG4122 45 PETGALLRLLARL-------SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA 107 (219)
T ss_pred hhHHHHHHHHHHh-------cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence 5677888887663 2457899999999999988766654 47999999999999999999774
No 172
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=94.93 E-value=0.041 Score=50.17 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=34.1
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHH
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are 198 (232)
...-+||||||+|-.+.- |..---...-||.++.|+++|.+
T Consensus 50 ~~~~iLDIGCGsGLSg~v-L~~~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSV-LSDSGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred CCcEEEEeccCCCcchhe-eccCCceEEeecCCHHHHHHHHH
Confidence 346899999999999976 44444688899999999999984
No 173
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=94.92 E-value=0.039 Score=52.43 Aligned_cols=69 Identities=17% Similarity=0.129 Sum_probs=47.4
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH 231 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD 231 (232)
+...+||+|||+|-++.--......+|-+||-+.-. +.|.+.+..... ..|.+++..-++|.. |.++.|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~-----~~ii~vi~gkvEdi~LP~eKVD 129 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGL-----EDVITVIKGKVEDIELPVEKVD 129 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCc-----cceEEEeecceEEEecCcccee
Confidence 346899999999999964333346899999988755 888876644221 334577777777766 324554
No 174
>PTZ00146 fibrillarin; Provisional
Probab=94.85 E-value=0.05 Score=50.51 Aligned_cols=39 Identities=13% Similarity=-0.018 Sum_probs=30.6
Q ss_pred ceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHH
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAAR 197 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Ar 197 (232)
..+|||+|||+|..|.++ +..+ ..|-+||.++.+++.+.
T Consensus 133 G~~VLDLGaG~G~~t~~l-AdiVG~~G~VyAVD~s~r~~~dLl 174 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHV-SDLVGPEGVVYAVEFSHRSGRDLT 174 (293)
T ss_pred CCEEEEeCCcCCHHHHHH-HHHhCCCCEEEEEECcHHHHHHHH
Confidence 368999999999999884 5554 57999999987554443
No 175
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=94.72 E-value=0.13 Score=44.48 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=64.3
Q ss_pred hhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc-Ce
Q 026812 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NE 182 (232)
Q Consensus 104 ~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f-~~ 182 (232)
..|.+-..-|+.. +| ...+...+---.+-|+++|..-..-+. ...+++|+|+|-|==+..|-+-+= -+
T Consensus 6 ~~y~~lL~~~N~~---~N-----Lt~~~~~~~~~~~Hi~DSL~~~~~~~~---~~~~~lDiGSGaGfPGipLaI~~p~~~ 74 (184)
T PF02527_consen 6 EQYLELLLEWNKK---IN-----LTSIRDPEEIWERHILDSLALLPFLPD---FGKKVLDIGSGAGFPGIPLAIARPDLQ 74 (184)
T ss_dssp HHHHHHHHHHHHC---SS-----S-S--SHHHHHHHHHHHHHGGGGCS-C---CCSEEEEETSTTTTTHHHHHHH-TTSE
T ss_pred HHHHHHHHHhCce---ee-----eccCCCHHHHHHHHHHHHHHhhhhhcc---CCceEEecCCCCCChhHHHHHhCCCCc
Confidence 3466666666652 33 333445554566888888865333221 112799999999998876443332 47
Q ss_pred eEEecCcHH---HHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 183 VDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 183 VDLVEPv~~---Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
|+|||++.+ |++.+...++- ..+ ++++.-.++......||
T Consensus 75 ~~LvEs~~KK~~FL~~~~~~L~L--------~nv-~v~~~R~E~~~~~~~fd 117 (184)
T PF02527_consen 75 VTLVESVGKKVAFLKEVVRELGL--------SNV-EVINGRAEEPEYRESFD 117 (184)
T ss_dssp EEEEESSHHHHHHHHHHHHHHT---------SSE-EEEES-HHHTTTTT-EE
T ss_pred EEEEeCCchHHHHHHHHHHHhCC--------CCE-EEEEeeecccccCCCcc
Confidence 999999986 77777777644 223 77888887733334554
No 176
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=94.51 E-value=0.046 Score=49.28 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=51.2
Q ss_pred hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcc
Q 026812 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (232)
Q Consensus 137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~ 214 (232)
....||..|... .+..+||++|.++|--|..|..-. -.+|..+|.++.+.+.|++++..... .++|
T Consensus 66 ~~g~lL~~l~~~-------~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I- 133 (247)
T PLN02589 66 DEGQFLNMLLKL-------INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKI- 133 (247)
T ss_pred HHHHHHHHHHHH-------hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCce-
Confidence 345777776552 234689999999999998754332 24899999999999999999976433 2565
Q ss_pred eEEEe
Q 026812 215 NFFCV 219 (232)
Q Consensus 215 n~~~v 219 (232)
++.+-
T Consensus 134 ~~~~G 138 (247)
T PLN02589 134 DFREG 138 (247)
T ss_pred EEEec
Confidence 55444
No 177
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=94.50 E-value=0.027 Score=50.88 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=42.8
Q ss_pred CcceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQ 222 (232)
.+..+||++|.|.|-.|.. |++.. -+|.-.|..+.|.+.|++++...-. .....+++-.+.
T Consensus 39 ~pG~~VlEaGtGSG~lt~~-l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHA-LARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDVC 102 (247)
T ss_dssp -TT-EEEEE--TTSHHHHH-HHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-GG
T ss_pred CCCCEEEEecCCcHHHHHH-HHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEeccee
Confidence 3457999999999999976 55543 5999999999999999999876321 233466666663
No 178
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.47 E-value=0.049 Score=46.51 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=42.5
Q ss_pred eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI 224 (232)
Q Consensus 160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF 224 (232)
.+||+-||+|--|.. +++.|++|.+||.++.-++.|+.|..-.- -.++| ++++...-++
T Consensus 2 ~vlD~fcG~GGNtIq-FA~~~~~Viaidid~~~~~~a~hNa~vYG----v~~~I-~~i~gD~~~~ 60 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQ-FARTFDRVIAIDIDPERLECAKHNAEVYG----VADNI-DFICGDFFEL 60 (163)
T ss_dssp EEEETT-TTSHHHHH-HHHTT-EEEEEES-HHHHHHHHHHHHHTT-----GGGE-EEEES-HHHH
T ss_pred EEEEeccCcCHHHHH-HHHhCCeEEEEECCHHHHHHHHHHHHHcC----CCCcE-EEEeCCHHHH
Confidence 589999999999998 67889999999999999999999875421 12455 6666554443
No 179
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.38 E-value=0.061 Score=43.55 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=37.3
Q ss_pred CcceeeeccCCccccchHHHHh-----hccCeeEEecCcHHHHHHHHHHhCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl-----~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.+..+++|+|||-|-+|..|.. ..--+|..||.++.+++.+.+....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 75 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK 75 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence 4557899999999999976444 2346999999999999998876533
No 180
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=94.13 E-value=0.09 Score=44.19 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=34.2
Q ss_pred CcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.+..+|||+|||+|-++.- ++.. ..+|.+-|..+ .++.++.|+..
T Consensus 44 ~~~~~VLELGaG~Gl~gi~-~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~ 90 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIA-AAKLFGAARVVLTDYNE-VLELLRRNIEL 90 (173)
T ss_dssp TTTSEEEETT-TTSHHHHH-HHHT-T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred cCCceEEEECCccchhHHH-HHhccCCceEEEeccch-hhHHHHHHHHh
Confidence 3456999999999999975 5666 68999999999 89999998855
No 181
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=94.00 E-value=0.067 Score=50.08 Aligned_cols=45 Identities=27% Similarity=0.318 Sum_probs=39.4
Q ss_pred ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~ 202 (232)
...+||.|||.|-++..||..+- ..|++||.++.-+..|.||...
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr 194 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQR 194 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHH
Confidence 34799999999999999887764 6899999999999999998754
No 182
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.88 E-value=0.065 Score=47.34 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=36.6
Q ss_pred ceeeeccCCccccchHHHHhhcc---------CeeEEecCcHHHHHHHHHHhCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f---------~~VDLVEPv~~Fle~Are~l~~ 202 (232)
..+++++|||.|+.++.+|.-+. -++.+||+++.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 47999999999999999876553 2699999999999999998866
No 183
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=93.85 E-value=0.096 Score=41.41 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=32.8
Q ss_pred ccCCccc--cchHHHHhh-c--cCeeEEecCcHHHHHHHHHH--hCCCCCCCCCCCCcceEEEecC
Q 026812 163 DCGSGIG--RITKNLLIR-Y--FNEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPL 221 (232)
Q Consensus 163 DcGAGIG--RVTk~lLl~-~--f~~VDLVEPv~~Fle~Are~--l~~~~~~~~~~~rv~n~~~vgL 221 (232)
||||.+| ..+..++.. . -.+|-++||++..++.++.+ ++-+.. ... .+++..++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~----~~~-~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK----DGE-VEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT----STT-GGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC----Cce-EEEEEeec
Confidence 8999999 666665532 2 36899999999999999998 433211 122 37777665
No 184
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.75 E-value=0.097 Score=36.59 Aligned_cols=38 Identities=34% Similarity=0.417 Sum_probs=30.1
Q ss_pred eeccCCccccchHHHHhhccC---eeEEecCcHHHHHHHHHHh
Q 026812 161 ALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESL 200 (232)
Q Consensus 161 ALDcGAGIGRVTk~lLl~~f~---~VDLVEPv~~Fle~Are~l 200 (232)
+||+|||+|+.+ ++.+... .|..+|+++.++..++...
T Consensus 52 ~ld~~~g~g~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (257)
T COG0500 52 VLDIGCGTGRLA--LLARLGGRGAYVVGVDLSPEMLALARARA 92 (257)
T ss_pred eEEecCCcCHHH--HHHHhCCCCceEEEEeCCHHHHHHHHhhh
Confidence 999999999987 4555543 6777999999999865543
No 185
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=93.64 E-value=0.12 Score=49.97 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=48.2
Q ss_pred cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQ 229 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~ 229 (232)
....+||+|||.|-++- |-++- .++|=+||.++ |.+-|+..+++... .+|| .++.--++|...+++
T Consensus 177 ~~kiVlDVGaGSGILS~-FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~----~~rI-tVI~GKiEdieLPEk 243 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSF-FAAQAGAKKVYAVEASE-MAQYARKLVASNNL----ADRI-TVIPGKIEDIELPEK 243 (517)
T ss_pred CCcEEEEecCCccHHHH-HHHHhCcceEEEEehhH-HHHHHHHHHhcCCc----cceE-EEccCccccccCchh
Confidence 34589999999999994 44443 68999999874 88999988876543 3666 666666777664444
No 186
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.59 E-value=0.076 Score=51.53 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=51.1
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI 227 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe 227 (232)
+..++||.=||+|.+|.. |++.+.+|..||.++..++.|++|.+.... .. ..|..-..++|.+.
T Consensus 293 ~~~~vlDlYCGvG~f~l~-lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i-----~N-~~f~~~~ae~~~~~ 356 (432)
T COG2265 293 GGERVLDLYCGVGTFGLP-LAKRVKKVHGVEISPEAVEAAQENAAANGI-----DN-VEFIAGDAEEFTPA 356 (432)
T ss_pred CCCEEEEeccCCChhhhh-hcccCCEEEEEecCHHHHHHHHHHHHHcCC-----Cc-EEEEeCCHHHHhhh
Confidence 446899999999999987 888999999999999999999999866221 12 26666667776654
No 187
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=93.42 E-value=0.16 Score=44.48 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=37.1
Q ss_pred cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhh-ccCeeEEecCcHHHHHHHHHH
Q 026812 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARES 199 (232)
Q Consensus 133 ~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~-~f~~VDLVEPv~~Fle~Are~ 199 (232)
+.......+|..+.. .+...-+|+|||+|++....-+. .|.++--||..+...+.|++.
T Consensus 26 i~~~~~~~il~~~~l--------~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~ 85 (205)
T PF08123_consen 26 ISPEFVSKILDELNL--------TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEEL 85 (205)
T ss_dssp CHHHHHHHHHHHTT----------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCC--------CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHH
Confidence 333444555555432 34568999999999998654433 367899999999999888653
No 188
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=93.25 E-value=0.059 Score=51.30 Aligned_cols=61 Identities=8% Similarity=-0.061 Sum_probs=47.0
Q ss_pred eeeeccCCccccchHHHHhh--ccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812 159 LVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~--~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~ 225 (232)
.++||+-||+|-.+...+.. .+++|.++|.++.-++.+++|+..... ..+ .+++.....+-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-----~~~-~v~~~Da~~~l 108 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-----ENI-EVPNEDAANVL 108 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcE-EEEchhHHHHH
Confidence 47999999999999998876 468999999999999999999855210 112 56666655443
No 189
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=92.96 E-value=0.12 Score=47.60 Aligned_cols=61 Identities=11% Similarity=0.244 Sum_probs=49.1
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN 226 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P 226 (232)
.+..|+|+|||.|-|+.+++.....++.++|-+-.|++.++..- . ..|...|-++=++|-+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q--d-------p~i~~~~~v~DEE~Ld 132 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ--D-------PSIETSYFVGDEEFLD 132 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC--C-------CceEEEEEecchhccc
Confidence 34579999999999999999888999999999999999987632 1 3455667677666654
No 190
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.47 E-value=0.18 Score=44.76 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=34.9
Q ss_pred ceeeeccCCccccchHHHHhhc---cCeeEEecCcHHHHHHHHHHhC
Q 026812 158 HLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~---f~~VDLVEPv~~Fle~Are~l~ 201 (232)
..-+||+|||.|-||. +|++. ....-+.|.|+.-++.-++...
T Consensus 44 ~~i~lEIG~GSGvvst-fL~~~i~~~~~~latDiNp~A~~~Tl~TA~ 89 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVST-FLASVIGPQALYLATDINPEALEATLETAR 89 (209)
T ss_pred ceeEEEecCCcchHHH-HHHHhcCCCceEEEecCCHHHHHHHHHHHH
Confidence 4679999999999995 57766 3567899999999998776553
No 191
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=91.74 E-value=0.2 Score=43.97 Aligned_cols=64 Identities=17% Similarity=0.072 Sum_probs=49.4
Q ss_pred eeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC
Q 026812 161 ALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII 228 (232)
Q Consensus 161 ALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~ 228 (232)
+.||||--|-+...|+.+. +.+|-++|.++.=++.|++++..... .++|.....-||+.+.|.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgdGL~~l~~~e 65 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGDGLEVLKPGE 65 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECCcccccCCCC
Confidence 5799999999999977775 57899999999999999999876322 3678777777899888754
No 192
>PRK00536 speE spermidine synthase; Provisional
Probab=91.34 E-value=0.25 Score=45.11 Aligned_cols=71 Identities=13% Similarity=0.034 Sum_probs=50.7
Q ss_pred CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
..+.+||=+|.|=|-+.+.+|.+- .+||+||.++..++.+++++.... .+-+..|+ +++. .+.+ ...++||
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~-~~~~DpRv-~l~~-~~~~-~~~~~fD 141 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFH-EVKNNKNF-THAK-QLLD-LDIKKYD 141 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHH-HhhcCCCE-EEee-hhhh-ccCCcCC
Confidence 455799999999999999977664 699999999999999999775421 12345676 5554 2222 1234777
No 193
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=91.21 E-value=0.32 Score=42.08 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=37.5
Q ss_pred cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQ 222 (232)
+..++||+|+|.|..+..++..+ --++.++|. +..++.+++ . +|| ++....+-
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~--------~rv-~~~~gd~f 153 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A--------DRV-EFVPGDFF 153 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T--------TTE-EEEES-TT
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c--------ccc-ccccccHH
Confidence 34589999999999999976654 247888888 778888887 2 455 66666554
No 194
>PRK10742 putative methyltransferase; Provisional
Probab=89.68 E-value=0.5 Score=43.17 Aligned_cols=42 Identities=24% Similarity=0.176 Sum_probs=35.8
Q ss_pred eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
++|||=||.||.+.-++.. ...|++||-++.....+++++..
T Consensus 91 ~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHH
Confidence 7999999999999865544 44699999999999999888755
No 195
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=89.64 E-value=0.4 Score=44.39 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=37.8
Q ss_pred ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~ 202 (232)
..-+||+||-.|-+|.. +++.| ..|--||.++..++.|++++.-
T Consensus 59 ~~~~LDIGCNsG~lt~~-iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLS-IAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cceeEeccCCcchhHHH-HHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 45799999999999987 66666 5788999999999999998743
No 196
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=89.60 E-value=0.79 Score=45.73 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=38.7
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~ 205 (232)
..-+||+|+|+|-.+---.....+.|+++|.=.-|.+.|+.-...+++
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~ 114 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM 114 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC
Confidence 457999999999999422222369999999999999999998877665
No 197
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=89.10 E-value=0.62 Score=40.83 Aligned_cols=46 Identities=22% Similarity=0.183 Sum_probs=42.7
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
...++|||=||+|-++..=|++.+..|.+||.+.+-+..+++|+..
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence 3469999999999999999999999999999999999999999865
No 198
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=88.30 E-value=1.1 Score=43.18 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=40.1
Q ss_pred cceeeeccCCccccchHHHHhhc---------cCeeEEecCcHHHHHHHHHHhCCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAPE 203 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~---------f~~VDLVEPv~~Fle~Are~l~~~ 203 (232)
....++++|||.|.....||... -.++-+||||+.+...=++.|+..
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 34689999999999999988766 368999999999999888888663
No 199
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=88.23 E-value=0.49 Score=40.80 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=32.7
Q ss_pred eeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812 160 VALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 160 rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.+||+|||-|+....+ +... ..+-.||+...-+..|...+..
T Consensus 20 l~lEIG~G~G~~l~~~-A~~~Pd~n~iGiE~~~~~v~~a~~~~~~ 63 (195)
T PF02390_consen 20 LILEIGCGKGEFLIEL-AKRNPDINFIGIEIRKKRVAKALRKAEK 63 (195)
T ss_dssp EEEEET-TTSHHHHHH-HHHSTTSEEEEEES-HHHHHHHHHHHHH
T ss_pred eEEEecCCCCHHHHHH-HHHCCCCCEEEEecchHHHHHHHHHHHh
Confidence 8999999999999885 4444 5788999999999988766544
No 200
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=87.50 E-value=0.95 Score=43.38 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=26.6
Q ss_pred CcceeeeccCCccccchHHHHhhccCeeEEecCc
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV 189 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv 189 (232)
.+..+|||+||.+|--|.. |.+....|.+||..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~-L~~rG~~V~AVD~g 242 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQ-LVRRGMFVTAVDNG 242 (357)
T ss_pred CCCCEEEEeCCCCcHHHHH-HHHcCCEEEEEech
Confidence 3557999999999999975 55555699999944
No 201
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.09 E-value=1.6 Score=39.60 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=56.8
Q ss_pred CcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc----cCeeEEecCcHHHHHHHHHHhCCC
Q 026812 128 GNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPE 203 (232)
Q Consensus 128 ~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~----f~~VDLVEPv~~Fle~Are~l~~~ 203 (232)
-++|-+++.. ..|..|... + .+...+||+|+|+|-.|-- ...+ +-.+.-||-.+..++-+++++..+
T Consensus 61 ~~iSAp~mha--~~le~L~~~-L-----~pG~s~LdvGsGSGYLt~~-~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~ 131 (237)
T KOG1661|consen 61 LTISAPHMHA--TALEYLDDH-L-----QPGASFLDVGSGSGYLTAC-FARMVGATGGNVHGIEHIPELVEYSKKNLDKD 131 (237)
T ss_pred eEEcchHHHH--HHHHHHHHh-h-----ccCcceeecCCCccHHHHH-HHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence 4477777653 223333321 1 1236899999999999853 4433 444578999999999999988652
Q ss_pred C-----CCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 204 N-----HMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 204 ~-----~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
- ...-+...+.=+.-=+.|-|.+..+||
T Consensus 132 i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YD 164 (237)
T KOG1661|consen 132 ITTSESSSKLKRGELSIVVGDGRKGYAEQAPYD 164 (237)
T ss_pred ccCchhhhhhccCceEEEeCCccccCCccCCcc
Confidence 1 000111222122233577777777888
No 202
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=86.09 E-value=1.4 Score=43.31 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=38.9
Q ss_pred cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~ 202 (232)
+..+|||++||+|--|.++...+- ..|.++|++++.+..+++++..
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r 160 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR 160 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 346899999999999988654442 4899999999999999999865
No 203
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=85.41 E-value=1.1 Score=40.03 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=35.2
Q ss_pred eeeccCCccccchHHHHhhccCe-eEEecCcHHHHHHHHHH
Q 026812 160 VALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARES 199 (232)
Q Consensus 160 rALDcGAGIGRVTk~lLl~~f~~-VDLVEPv~~Fle~Are~ 199 (232)
+|||.|||-|-+-..|....|.. ..-||-+++-++.|+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~ni 110 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNI 110 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHH
Confidence 89999999999998877777865 99999999999987654
No 204
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=84.49 E-value=2.1 Score=38.69 Aligned_cols=41 Identities=22% Similarity=0.164 Sum_probs=37.1
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHh
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l 200 (232)
....|.|||+|-.+- +-++..++|-+||-+++-...|.+|+
T Consensus 34 d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~ 74 (252)
T COG4076 34 DTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENL 74 (252)
T ss_pred hceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcC
Confidence 468899999999994 57777899999999999999999997
No 205
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=84.25 E-value=1.9 Score=40.44 Aligned_cols=43 Identities=21% Similarity=0.089 Sum_probs=37.0
Q ss_pred eeeeccCCccccchHHHHhhcc-----CeeEEecCcHHHHHHHHHHhC
Q 026812 159 LVALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f-----~~VDLVEPv~~Fle~Are~l~ 201 (232)
..++|.|||.||=|+.||..+- .+--.||.+..|++.+.+.+.
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 4799999999999998777652 347899999999999999887
No 206
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=83.99 E-value=2.5 Score=38.26 Aligned_cols=65 Identities=17% Similarity=0.024 Sum_probs=48.9
Q ss_pred eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI 227 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe 227 (232)
.++.||||=-+.....++.+. +..+.++|.++.-++.|.+++....- .+++...---||-.+.++
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl~~l~~~ 83 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGLAVLELE 83 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCccccCcc
Confidence 459999999999999977765 78999999999999999999877432 355533333345444444
No 207
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=82.89 E-value=2 Score=40.91 Aligned_cols=69 Identities=9% Similarity=-0.003 Sum_probs=50.9
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD 231 (232)
..++||.=||||-+|.++.......|.++|.|+.-++-++||+..... ..+ ...++..-.++.|. ..+|
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v----~~~-v~~i~gD~rev~~~~~~aD 258 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV----EGR-VEPILGDAREVAPELGVAD 258 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc----cce-eeEEeccHHHhhhccccCC
Confidence 468999999999999985555444599999999999999999976332 122 24667666666665 3444
No 208
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.40 E-value=1.1 Score=38.83 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=50.5
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH 231 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD 231 (232)
...++|+|||.|-.+..+-..-...|--||.++.-++.+..|..+-- -.+ ++.|+.+-+..|.. .||
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE------vqi-dlLqcdildle~~~g~fD 116 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFE------VQI-DLLQCDILDLELKGGIFD 116 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhh------hhh-heeeeeccchhccCCeEe
Confidence 35799999999999866555556889999999999999988765421 123 78888888777665 444
No 209
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=82.22 E-value=0.74 Score=38.09 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=27.5
Q ss_pred cceeeeccCCccccchHHHHhhc--cCeeEEecCcHH
Q 026812 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSH 191 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~ 191 (232)
...++||+||++|-.|..++.+. ..+|-+||+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45799999999999998755554 379999998875
No 210
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=82.11 E-value=1.6 Score=42.71 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=38.4
Q ss_pred cceeeeccCCccccchHHHHhhcc---------CeeEEecCcHHHHHHHHHHhCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f---------~~VDLVEPv~~Fle~Are~l~~ 202 (232)
...++||.+||.|.....++.... .+|.++|.++..+..++.++..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~ 85 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE 85 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh
Confidence 346899999999999988766542 5789999999999999988754
No 211
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=81.31 E-value=1.9 Score=38.84 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=37.4
Q ss_pred eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhC
Q 026812 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~ 201 (232)
+++|+-||+|-.+..|-.-.|+.|-+||.++..++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 589999999999999766668999999999999999999874
No 212
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=80.62 E-value=2 Score=39.57 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=51.7
Q ss_pred hhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccC---e
Q 026812 106 YREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN---E 182 (232)
Q Consensus 106 Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~---~ 182 (232)
-..+.+||+. |...++.----.|..|..-.+...+.. .....++|++|||.|--.-++|.-.-+ .
T Consensus 32 ~~~~~k~wD~-----------fy~~~~~rFfkdR~wL~~Efpel~~~~-~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~ 99 (264)
T KOG2361|consen 32 EREASKYWDT-----------FYKIHENRFFKDRNWLLREFPELLPVD-EKSAETILEVGCGVGNTVFPLLKTSPNNRLK 99 (264)
T ss_pred hcchhhhhhh-----------hhhhccccccchhHHHHHhhHHhhCcc-ccChhhheeeccCCCcccchhhhcCCCCCeE
Confidence 3478899985 333333322223333433333222221 122338999999999999996654333 6
Q ss_pred eEEecCcHHHHHHHHHHhC
Q 026812 183 VDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 183 VDLVEPv~~Fle~Are~l~ 201 (232)
|=+.|-++.-++..+++-.
T Consensus 100 v~acDfsp~Ai~~vk~~~~ 118 (264)
T KOG2361|consen 100 VYACDFSPRAIELVKKSSG 118 (264)
T ss_pred EEEcCCChHHHHHHHhccc
Confidence 8899999999998887643
No 213
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=79.38 E-value=2.2 Score=41.91 Aligned_cols=103 Identities=11% Similarity=0.110 Sum_probs=62.5
Q ss_pred ccCHHHHHHHHhccCCchhhhhhhhhhhhhhcccCC-ccchhccccCCCcccccc--------------hhhHHHHHHHH
Q 026812 81 FKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGV-EASVDGVLGGFGNVNEVD--------------IKGSEAFLQML 145 (232)
Q Consensus 81 ~~s~~emWk~~~~~d~~~~~~~~~~Y~~a~~YWe~v-eaTvdGMLGGf~~vs~~D--------------i~gS~~FL~~L 145 (232)
+.-|...|+.-+-. -+-..-+.+||.-+ =.|-++||-.+..+|..- |+.-...+.++
T Consensus 77 ~~~~~a~lk~fl~~--------lks~a~~~~~~r~q~i~t~~e~l~~~~~~sq~~~l~rkh~~~k~qhEi~~lselvSsi 148 (476)
T KOG2651|consen 77 VVRYRAVLKLFLLA--------LKSTACALAFTRMQGIQTPSEFLENPSQSSQLTALFRKHVRPKKQHEIRRLSELVSSI 148 (476)
T ss_pred hhhhhhhHHHHHHH--------HHHHhhhHHHHhcccccCchhhhcchhhhhhhhhhhhhcccHHHHHHHHHHHHHHHHH
Confidence 45555666654322 12345677888854 234556776665544321 11222233333
Q ss_pred hcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHH
Q 026812 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (232)
Q Consensus 146 ~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are 198 (232)
-.- ..-..++|+|||+|-.+.-|=+++--.|-+||-+..|.+.|+.
T Consensus 149 ~~f-------~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 149 SDF-------TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred Hhh-------cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 221 2234699999999999976555655799999999999998753
No 214
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=77.15 E-value=3.9 Score=38.38 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCCCC--cCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHh
Q 026812 139 EAFLQMLLSDRFPN--ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (232)
Q Consensus 139 ~~FL~~L~~~~~~~--~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l 200 (232)
.++++++++..... ....+..+|||+|||=|-...--......++..||+++.=+++|++..
T Consensus 42 NNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 42 NNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERY 105 (331)
T ss_dssp HHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHH
Confidence 56666665422211 011256799999999888766656666789999999999999999876
No 215
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=76.12 E-value=3.4 Score=37.84 Aligned_cols=61 Identities=23% Similarity=0.118 Sum_probs=40.5
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI 227 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe 227 (232)
+..++||+||-+|-.|--+|....++|-+||..-.-+. -.+.. ..||..+-...+..++|+
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~---~kLR~-------d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH---WKLRN-------DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC---HhHhc-------CCcEEEEecCChhhCCHH
Confidence 45689999999999997655555899999998762222 12222 245555555566555554
No 216
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=75.93 E-value=2.6 Score=42.03 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=21.2
Q ss_pred hhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccch
Q 026812 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRIT 172 (232)
Q Consensus 136 ~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVT 172 (232)
.+.-.||..+-.+..... .....++-|-|||||-.
T Consensus 432 g~vLnFLe~V~~rq~~l~--~AgpIvVHCSAGIGrTG 466 (600)
T KOG0790|consen 432 GGVLNFLEEVNHRQESLM--DAGPIVVHCSAGIGRTG 466 (600)
T ss_pred cHHHHHHHHhhhhhcccc--ccCcEEEEccCCcCCcc
Confidence 345677777654322111 12247999999999954
No 217
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=75.90 E-value=3.6 Score=34.80 Aligned_cols=70 Identities=16% Similarity=0.015 Sum_probs=43.9
Q ss_pred cceeeeccCCccccchHHHHhhcc--C--------eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF--N--------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT- 225 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f--~--------~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~- 225 (232)
+...+||-=||+|.+-..-.+... . ++-.+|.++++++.|++|+..... .....+.+..++++.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----~~~i~~~~~D~~~l~~ 102 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----EDYIDFIQWDARELPL 102 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGGGGG
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----CCceEEEecchhhccc
Confidence 346899999999999866332221 1 256999999999999999865221 222367777777777
Q ss_pred CCCCCC
Q 026812 226 NIIQYH 231 (232)
Q Consensus 226 Pe~~YD 231 (232)
+...+|
T Consensus 103 ~~~~~d 108 (179)
T PF01170_consen 103 PDGSVD 108 (179)
T ss_dssp TTSBSC
T ss_pred ccCCCC
Confidence 444444
No 218
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=75.57 E-value=6.6 Score=36.33 Aligned_cols=60 Identities=17% Similarity=0.090 Sum_probs=49.8
Q ss_pred cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 133 ~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.|-...|.+|..+-. ..++|||=|=+|-.|.+-+.....+|.-||.+..+++.|++|++.
T Consensus 109 lDqR~nR~~v~~~~~----------gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l 168 (286)
T PF10672_consen 109 LDQRENRKWVRKYAK----------GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL 168 (286)
T ss_dssp GGGHHHHHHHHHHCT----------TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHcC----------CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 676778888888633 258999999999999988888788999999999999999999865
No 219
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=75.30 E-value=1.5 Score=40.44 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=37.3
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHH
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~ 199 (232)
....+.++|.|.|-+|+.+|..-.+..++||-+..|+.-++-.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L 92 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQML 92 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHH
Confidence 3458999999999999999877788999999999999877643
No 220
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=74.46 E-value=2.3 Score=42.66 Aligned_cols=45 Identities=22% Similarity=0.168 Sum_probs=40.5
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.....||+=||+|.++.. |++.+++|--||.++.-++-|+.|...
T Consensus 383 ~~k~llDv~CGTG~igla-la~~~~~ViGvEi~~~aV~dA~~nA~~ 427 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLA-LARGVKRVIGVEISPDAVEDAEKNAQI 427 (534)
T ss_pred CCcEEEEEeecCCceehh-hhccccceeeeecChhhcchhhhcchh
Confidence 347899999999999987 899999999999999999999988644
No 221
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=74.18 E-value=3.6 Score=37.24 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=38.8
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhC---CCCCC-CCCCCCcceEEEecCCCcc--CCCCCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA---PENHM-APDMHKATNFFCVPLQVIT--NIIQYH 231 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~---~~~~~-~~~~~rv~n~~~vgLQdF~--Pe~~YD 231 (232)
.++|||=||-||.+. +|+.+..+|+++|-++-.....++-|. ..+.. .....|| ++++..-.+|- |...||
T Consensus 77 ~~VLDaTaGLG~Da~-vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri-~l~~~d~~~~L~~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAF-VLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRI-QLIHGDALEYLRQPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHH-HHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHE-EEEES-CCCHCCCHSS--S
T ss_pred CEEEECCCcchHHHH-HHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCC-EEEcCCHHHHHhhcCCCCC
Confidence 489999999999995 577777899999999988776654332 12111 1112355 67777766663 333444
No 222
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=73.88 E-value=1.7 Score=42.41 Aligned_cols=52 Identities=21% Similarity=0.118 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc---cCeeEEecCcHHHHHH
Q 026812 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDA 195 (232)
Q Consensus 139 ~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~---f~~VDLVEPv~~Fle~ 195 (232)
+.-|..|...... -...++||||+|+|...-. +-.+ .+.+.+||-++..-++
T Consensus 99 ~asL~~L~~~~~d----fapqsiLDvG~GPgtgl~A-~n~i~Pdl~sa~ile~sp~lrkV 153 (484)
T COG5459 99 RASLDELQKRVPD----FAPQSILDVGAGPGTGLWA-LNDIWPDLKSAVILEASPALRKV 153 (484)
T ss_pred HHHHHHHHHhCCC----cCcchhhccCCCCchhhhh-hcccCCCchhhhhhccCHHHHHH
Confidence 4445555543211 1334699999999887643 3333 4899999988755443
No 223
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=72.89 E-value=4.8 Score=39.56 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=45.1
Q ss_pred cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHH--hCCCCCCCCCCCCcceEEEecC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPL 221 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~--l~~~~~~~~~~~rv~n~~~vgL 221 (232)
.-.++|=+|.|-|--.+.+|..= +.+|++||.+|+|+|.++.+ +...+..+-+..|+ .+++-.-
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv-~Vv~dDA 355 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRV-TVVNDDA 355 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCee-EEEeccH
Confidence 34589999999999999976554 89999999999999999833 33322222234555 4444443
No 224
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=72.21 E-value=8.4 Score=39.50 Aligned_cols=64 Identities=14% Similarity=0.045 Sum_probs=46.6
Q ss_pred ceeeeccCCccccchHHHHhh-------------------------------------------ccCeeEEecCcHHHHH
Q 026812 158 HLVALDCGSGIGRITKNLLIR-------------------------------------------YFNEVDLLEPVSHFLD 194 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~-------------------------------------------~f~~VDLVEPv~~Fle 194 (232)
....+|-.||.|++...-.+- .-.+|..+|.++.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 468999999999998764331 0126999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812 195 AARESLAPENHMAPDMHKATNFFCVPLQVITN 226 (232)
Q Consensus 195 ~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P 226 (232)
.|++|+..... .+.| +|.+..+.++.+
T Consensus 271 ~A~~N~~~~g~----~~~i-~~~~~D~~~~~~ 297 (702)
T PRK11783 271 AARKNARRAGV----AELI-TFEVKDVADLKN 297 (702)
T ss_pred HHHHHHHHcCC----Ccce-EEEeCChhhccc
Confidence 99999865321 1233 677878877654
No 225
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=69.27 E-value=5.1 Score=36.05 Aligned_cols=42 Identities=21% Similarity=0.126 Sum_probs=32.4
Q ss_pred CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHH
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are 198 (232)
-+..+|||.|||.|-|+.--..-....|-+-|.. -|+.++-+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~-P~~~~ai~ 119 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADID-PWLEQAIR 119 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCC-hHHHHHhh
Confidence 4567999999999999986555557899999999 55555543
No 226
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=65.62 E-value=11 Score=34.50 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=32.9
Q ss_pred CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.+..+.||+|||+=-.-.--..+.|++|.+.|.++.=++.++..+..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~ 101 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRK 101 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCC
Confidence 35578999999994332212235689999999999999988887754
No 227
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=65.20 E-value=16 Score=34.62 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=40.3
Q ss_pred CcceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.+.-++||+-||.||.--..|...- ++|-++|-++.=++..++.+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~ 183 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE 183 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 3557999999999999888777763 6899999999999999887765
No 228
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=59.71 E-value=15 Score=34.36 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=33.5
Q ss_pred ceeeeccCCccccchHHHHh-hcc-CeeEEecCcHHHHHHHHHHhCCCCC
Q 026812 158 HLVALDCGSGIGRITKNLLI-RYF-NEVDLLEPVSHFLDAARESLAPENH 205 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl-~~f-~~VDLVEPv~~Fle~Are~l~~~~~ 205 (232)
.-++||+|+|.--|= +||. +.+ =++.+.|.++..++.|++++...+.
T Consensus 103 ~v~glDIGTGAscIY-pLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~ 151 (299)
T PF05971_consen 103 KVRGLDIGTGASCIY-PLLGAKLYGWSFVATDIDPKSLESARENVERNPN 151 (299)
T ss_dssp --EEEEES-TTTTHH-HHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T
T ss_pred ceEeecCCccHHHHH-HHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccc
Confidence 468999999998876 3444 333 4899999999999999999977533
No 229
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=58.71 E-value=9.9 Score=38.14 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=44.1
Q ss_pred CHHHHHHHHhccCCchhhhhhhhhhhhhhcccCCccchhccccCCCcc-cccchhhHHHHHHHHhcCCCCCcCCCcceee
Q 026812 83 NAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNV-NEVDIKGSEAFLQMLLSDRFPNARNNQHLVA 161 (232)
Q Consensus 83 s~~emWk~~~~~d~~~~~~~~~~Y~~a~~YWe~veaTvdGMLGGf~~v-s~~Di~gS~~FL~~L~~~~~~~~~~~~~~rA 161 (232)
|-+.+|...+.- .+-. -.++.+-|=.++...=-.=||=.+. +-+| .--.+|+++...... ......+
T Consensus 54 SRd~iW~~Nvph------~~L~-~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~--~Yid~i~~~~~~~~~---~g~iR~~ 121 (506)
T PF03141_consen 54 SRDYIWYANVPH------TKLA-EEKADQNWVRVEGDKFRFPGGGTMFPHGAD--HYIDQIAEMIPLIKW---GGGIRTA 121 (506)
T ss_pred ccceeeecccCc------hHHh-hhcccccceeecCCEEEeCCCCccccCCHH--HHHHHHHHHhhcccc---CCceEEE
Confidence 457788866532 1211 1345566655544332233331111 1111 112345555432111 2345689
Q ss_pred eccCCccccchHHHHhhcc
Q 026812 162 LDCGSGIGRITKNLLIRYF 180 (232)
Q Consensus 162 LDcGAGIGRVTk~lLl~~f 180 (232)
||+|||+|..+-.||.+-.
T Consensus 122 LDvGcG~aSF~a~l~~r~V 140 (506)
T PF03141_consen 122 LDVGCGVASFGAYLLERNV 140 (506)
T ss_pred EeccceeehhHHHHhhCCc
Confidence 9999999999998776643
No 230
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=57.16 E-value=16 Score=32.73 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=32.5
Q ss_pred eeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812 159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~ 202 (232)
..+||||||-|+.... +++.. ..+-.||+-..=+..|-..+..
T Consensus 50 pi~lEIGfG~G~~l~~-~A~~nP~~nfiGiEi~~~~v~~~l~k~~~ 94 (227)
T COG0220 50 PIVLEIGFGMGEFLVE-MAKKNPEKNFLGIEIRVPGVAKALKKIKE 94 (227)
T ss_pred cEEEEECCCCCHHHHH-HHHHCCCCCEEEEEEehHHHHHHHHHHHH
Confidence 3799999999999988 56665 3556788887777777665544
No 231
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=56.74 E-value=18 Score=33.37 Aligned_cols=42 Identities=24% Similarity=0.189 Sum_probs=34.1
Q ss_pred CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHH
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are 198 (232)
....+||==|||.||++-.+ +.+.-.|...|-+-.|+-...=
T Consensus 55 ~~~~~VLVPGsGLGRLa~Ei-a~~G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEI-AKLGYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred CCccEEEEcCCCcchHHHHH-hhccceEEEEEchHHHHHHHHH
Confidence 34568999999999999885 4544499999999999876654
No 232
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=56.45 E-value=21 Score=34.57 Aligned_cols=60 Identities=20% Similarity=0.112 Sum_probs=51.0
Q ss_pred cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 133 ~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
.|-..++..|..+.. ..++|||=|=+|-.|.+-+....++|+-||.+..-++.|++|+.-
T Consensus 203 lDqR~~R~~l~~~~~----------GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L 262 (393)
T COG1092 203 LDQRDNRRALGELAA----------GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL 262 (393)
T ss_pred HHhHHHHHHHhhhcc----------CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh
Confidence 566677777776544 358999999999999998777788999999999999999999865
No 233
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=54.79 E-value=16 Score=33.25 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=37.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHH
Q 026812 130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD 194 (232)
Q Consensus 130 vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle 194 (232)
+-..|...-+.|++.|... ..-.++|||||+++-+..+++.-=.-|-++.|.+.=+.
T Consensus 94 ~~~~~~~~~~~~~~~l~~~--------~D~iliD~~aGl~~~~~~~~~~sd~~viVt~pe~~si~ 150 (262)
T COG0455 94 LAKLDPEDLEDVIKELEEL--------YDYILIDTGAGLSRDTLSFILSSDELVIVTTPEPTSIT 150 (262)
T ss_pred HhhcCHHHHHHHHHHHHhc--------CCEEEEeCCCCccHHHHHHHHhcCcEEEEeCCCcchHH
Confidence 3344544556677776552 24689999999999998888776344555566554444
No 234
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=53.61 E-value=28 Score=33.84 Aligned_cols=44 Identities=7% Similarity=-0.004 Sum_probs=33.8
Q ss_pred eEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH 231 (232)
Q Consensus 183 VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD 231 (232)
+--+|.++.+++.|+.|...... .+. ..|++..++++.+. ..||
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv----~d~-I~f~~~d~~~l~~~~~~~g 301 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGV----GDL-IEFKQADATDLKEPLEEYG 301 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCC----Cce-EEEEEcchhhCCCCCCcCC
Confidence 55899999999999999755322 233 49999999999977 4554
No 235
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=52.96 E-value=22 Score=35.17 Aligned_cols=43 Identities=16% Similarity=0.026 Sum_probs=33.1
Q ss_pred cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHh
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESL 200 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l 200 (232)
....+||+|||-|..+.. ++..+ ..+-.||....-+..|-...
T Consensus 347 ~~p~~lEIG~G~G~~~~~-~A~~~p~~~~iGiE~~~~~~~~~~~~~ 391 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFIN-QAKMNPDALFIGVEVYLNGVANVLKLA 391 (506)
T ss_pred CCceEEEECCCchHHHHH-HHHhCCCCCEEEEEeeHHHHHHHHHHH
Confidence 345899999999999988 56655 46778899988777765544
No 236
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=52.28 E-value=28 Score=32.92 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=39.1
Q ss_pred CcceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCC
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPE 203 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~ 203 (232)
++..+||+-|.|.|-++-. |++-. -+|--.|.-+.-.++|.+.+..+
T Consensus 104 ~PGsvV~EsGTGSGSlSha-iaraV~ptGhl~tfefH~~Ra~ka~eeFr~h 153 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHA-IARAVAPTGHLYTFEFHETRAEKALEEFREH 153 (314)
T ss_pred CCCCEEEecCCCcchHHHH-HHHhhCcCcceEEEEecHHHHHHHHHHHHHh
Confidence 3457999999999999955 56654 79999999999999999988764
No 237
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=50.75 E-value=40 Score=31.61 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=46.3
Q ss_pred eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI 224 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF 224 (232)
..++||=+|-|--|..||... -.+|-.+|.++..++.|++.+.. + ..++ .+++..+.++
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~--~----~~R~-~~i~~nF~~l 81 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD--F----EGRV-VLIHDNFANF 81 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh--c----CCcE-EEEeCCHHHH
Confidence 579999999999999877553 26899999999999999998754 2 1355 6777766655
No 238
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=48.96 E-value=59 Score=29.60 Aligned_cols=46 Identities=20% Similarity=0.059 Sum_probs=38.0
Q ss_pred cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~ 202 (232)
+..++||+-|+.|-=|.++...+. ..|.++|.+++=+..+++++..
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r 132 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR 132 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh
Confidence 346799999999999987544443 5999999999999999988755
No 239
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.12 E-value=23 Score=34.05 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=36.2
Q ss_pred CcceeeeccCCc-cccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCC
Q 026812 156 NQHLVALDCGSG-IGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 156 ~~~~rALDcGAG-IGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
+...++|=+||| ||-+|. +-++. ..+|-++|+++.=++.|++ ++.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~-l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga 215 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTG-LVAKAMGASDVVITDLVANRLELAKK-FGA 215 (354)
T ss_pred ccCCeEEEECCcHHHHHHH-HHHHHcCCCcEEEeecCHHHHHHHHH-hCC
Confidence 456799999999 677774 44554 4899999999999999999 544
No 240
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=47.04 E-value=22 Score=29.11 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=27.3
Q ss_pred hhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhh
Q 026812 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR 178 (232)
Q Consensus 136 ~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~ 178 (232)
.+..+||-.|-...... .++..-.|+|||.|-.. ++|..
T Consensus 40 laIAAyLi~LW~~~~~~---~~~~~FVDlGCGNGLLV-~IL~~ 78 (112)
T PF07757_consen 40 LAIAAYLIELWRDMYGE---QKFQGFVDLGCGNGLLV-YILNS 78 (112)
T ss_pred HHHHHHHHHHHhcccCC---CCCCceEEccCCchHHH-HHHHh
Confidence 47788998886533221 23456899999999999 55655
No 241
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.55 E-value=19 Score=33.19 Aligned_cols=42 Identities=19% Similarity=0.041 Sum_probs=35.7
Q ss_pred eeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 161 ALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
++|+=||+|-.+..|-.-.|+.|-++|.++..++..+.|+..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~ 42 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN 42 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC
Confidence 578889999999997666688888999999999999988743
No 242
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=44.41 E-value=53 Score=29.42 Aligned_cols=55 Identities=16% Similarity=0.063 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhh--------ccCeeEEecCcHHHHHHHHHHh
Q 026812 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESL 200 (232)
Q Consensus 139 ~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~--------~f~~VDLVEPv~~Fle~Are~l 200 (232)
..|+..+.. .....++||-.||+|..-..++.. .-.++-.+|.++..+..|+-++
T Consensus 35 ~~l~~~~~~-------~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl 97 (311)
T PF02384_consen 35 VDLMVKLLN-------PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNL 97 (311)
T ss_dssp HHHHHHHHT-------T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHhhhh-------ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhh
Confidence 346666653 134568999999999987665542 1257788999999999888765
No 243
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=41.88 E-value=32 Score=25.87 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=24.4
Q ss_pred ccccchHHHHhhc--c-CeeEEecCcHHHHHHHHHH
Q 026812 167 GIGRITKNLLIRY--F-NEVDLLEPVSHFLDAARES 199 (232)
Q Consensus 167 GIGRVTk~lLl~~--f-~~VDLVEPv~~Fle~Are~ 199 (232)
|-|+++..++..+ . ..|.+||.++.-++.+++.
T Consensus 5 G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~ 40 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE 40 (116)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc
Confidence 4457777755444 2 3899999999999999874
No 244
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=41.40 E-value=11 Score=36.53 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=17.8
Q ss_pred ceeeeccCCccccchHHHHhhc
Q 026812 158 HLVALDCGSGIGRITKNLLIRY 179 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~ 179 (232)
..+++|.|||+|..|..++..+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~i 85 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVI 85 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHH
Confidence 5689999999999997655544
No 245
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=39.96 E-value=62 Score=29.76 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 138 S~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~ 202 (232)
-..|...++..- ....++||+|||-=-+|.+.+ ... ..+-+.|.+..+++-....+..
T Consensus 92 Ld~fY~~if~~~------~~p~sVlDigCGlNPlalp~~-~~~~~a~Y~a~DID~~~ve~l~~~l~~ 151 (251)
T PF07091_consen 92 LDEFYDEIFGRI------PPPDSVLDIGCGLNPLALPWM-PEAPGATYIAYDIDSQLVEFLNAFLAV 151 (251)
T ss_dssp HHHHHHHHCCCS---------SEEEEET-TTCHHHHHTT-TSSTT-EEEEEESBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC------CCCchhhhhhccCCceehhhc-ccCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 456777776631 235689999999999887744 333 4899999999999999887654
No 246
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=39.60 E-value=51 Score=27.04 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=31.6
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHH
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are 198 (232)
+...|||.=||+|+...- -.++--+--.+|.++.|++.|++
T Consensus 191 ~gdiVlDpF~GSGTT~~a-a~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVA-AEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHH-HHHTT-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHH-HHHcCCeEEEEeCCHHHHHHhcC
Confidence 346899999999998864 44556788999999999999875
No 247
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=37.88 E-value=27 Score=32.62 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=44.8
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHH-------HHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-------ARESLAPENHMAPDMHKATNFFCVPLQVITN 226 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~-------Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P 226 (232)
...++||.|||.|--....-.+....|+.-|-+..+++- +.-+++. .+.+.+.+-.+.+..++||..
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~---~~~e~~~~~~i~~s~l~dg~~ 189 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGV---EEKENHKVDEILNSLLSDGVF 189 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhh---hhhhcccceeccccccccchh
Confidence 456899999999998877555555899999999999841 1111110 023345666677777777754
No 248
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=36.63 E-value=80 Score=28.77 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=30.3
Q ss_pred CcceeeeccCCccccchHHHHhhccC---eeEEecCcHHHHHHH
Q 026812 156 NQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAA 196 (232)
Q Consensus 156 ~~~~rALDcGAGIGRVTk~lLl~~f~---~VDLVEPv~~Fle~A 196 (232)
.+..++|-.||..|+---| ++.... .|=+||.++...+.+
T Consensus 72 k~gskVLYLGAasGTTVSH-vSDIvg~~G~VYaVEfs~r~~rdL 114 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSH-VSDIVGPDGVVYAVEFSPRSMRDL 114 (229)
T ss_dssp -TT-EEEEETTTTSHHHHH-HHHHHTTTSEEEEEESSHHHHHHH
T ss_pred CCCCEEEEecccCCCccch-hhhccCCCCcEEEEEecchhHHHH
Confidence 3457999999999986655 678776 999999999655544
No 249
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=36.46 E-value=1e+02 Score=29.01 Aligned_cols=45 Identities=22% Similarity=0.165 Sum_probs=38.2
Q ss_pred cceeeeccCCccccchHHHHhhccC----eeEEecCcHHHHHHHHHHhCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFN----EVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~----~VDLVEPv~~Fle~Are~l~~ 202 (232)
+..+|||.=|++|-=|-+ |+++.. .|.++|.+++=+..+++++..
T Consensus 156 pge~VlD~cAAPGGKTth-la~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R 204 (355)
T COG0144 156 PGERVLDLCAAPGGKTTH-LAELMENEGAIVVAVDVSPKRLKRLRENLKR 204 (355)
T ss_pred CcCEEEEECCCCCCHHHH-HHHhcCCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 457999999999999988 455543 479999999999999999866
No 250
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=34.37 E-value=31 Score=33.07 Aligned_cols=87 Identities=21% Similarity=0.126 Sum_probs=59.5
Q ss_pred CCccchhccccCCCcccccchh--hHHHHHHHHhcCCCC-------CcCCCcceeeeccCCccccchHHHHhhc-cCeeE
Q 026812 115 GVEASVDGVLGGFGNVNEVDIK--GSEAFLQMLLSDRFP-------NARNNQHLVALDCGSGIGRITKNLLIRY-FNEVD 184 (232)
Q Consensus 115 ~veaTvdGMLGGf~~vs~~Di~--gS~~FL~~L~~~~~~-------~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VD 184 (232)
..+++++=.+|-++.++-+|.. .+-.-+..++..+.. ... .....+.|.=||||-.|-++|..- .+.|-
T Consensus 144 ~R~~~v~~L~Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~s-c~~eviVDLYAGIGYFTlpflV~agAk~V~ 222 (351)
T KOG1227|consen 144 RRPPNVQPLYGDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTS-CDGEVIVDLYAGIGYFTLPFLVTAGAKTVF 222 (351)
T ss_pred cCCCccccccccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhcc-cccchhhhhhcccceEEeehhhccCccEEE
Confidence 3567788888888888877741 222223333332110 000 122579999999999999777664 68999
Q ss_pred EecCcHHHHHHHHHHhCC
Q 026812 185 LLEPVSHFLDAARESLAP 202 (232)
Q Consensus 185 LVEPv~~Fle~Are~l~~ 202 (232)
+.|-++.-+|.++.++..
T Consensus 223 A~EwNp~svEaLrR~~~~ 240 (351)
T KOG1227|consen 223 ACEWNPWSVEALRRNAEA 240 (351)
T ss_pred EEecCHHHHHHHHHHHHh
Confidence 999999999999987644
No 251
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=33.92 E-value=69 Score=26.59 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=32.6
Q ss_pred ceeeeccCCc-cccchHHHHhhccCeeEEecCcHHHHHHHHHH
Q 026812 158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (232)
Q Consensus 158 ~~rALDcGAG-IGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~ 199 (232)
..++|-.|+| +|..+..++.....+|.+++.++.-.+.+++.
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 4578888887 68888877766678999999998777777553
No 252
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.53 E-value=22 Score=31.54 Aligned_cols=72 Identities=18% Similarity=0.120 Sum_probs=53.6
Q ss_pred CCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHh
Q 026812 126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESL 200 (232)
Q Consensus 126 Gf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l 200 (232)
||.+--++-|+.|+.-|+-+..... ..-+..++|+.|+|-=-.+--|++... ..|-+-|-++.-++-.+...
T Consensus 1 gfdntgnvciwpseeala~~~l~~~---n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~ 74 (201)
T KOG3201|consen 1 GFDNTGNVCIWPSEEALAWTILRDP---NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIR 74 (201)
T ss_pred CcCCCCcEEecccHHHHHHHHHhch---hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHH
Confidence 4777788999999988887643211 123446899999998777766666553 68999999999998877654
No 253
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.25 E-value=71 Score=28.08 Aligned_cols=38 Identities=26% Similarity=0.172 Sum_probs=28.7
Q ss_pred eeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHH
Q 026812 159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAAR 197 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Ar 197 (232)
...+|+|+|-|||-.. -++.+ -.-+-||.++=.+.-++
T Consensus 74 GklvDlGSGDGRiVla-aar~g~~~a~GvELNpwLVaysr 112 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLA-AARCGLRPAVGVELNPWLVAYSR 112 (199)
T ss_pred CcEEeccCCCceeehh-hhhhCCCcCCceeccHHHHHHHH
Confidence 5689999999999854 22322 47788999998877654
No 254
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=32.69 E-value=33 Score=30.51 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=27.7
Q ss_pred eeeccCCccccchHHHHhhccCeeE--EecCcHHHHHHHHHHh
Q 026812 160 VALDCGSGIGRITKNLLIRYFNEVD--LLEPVSHFLDAARESL 200 (232)
Q Consensus 160 rALDcGAGIGRVTk~lLl~~f~~VD--LVEPv~~Fle~Are~l 200 (232)
+||++|||+|-=+.+| ++.+-++. --|+.+..+...+.++
T Consensus 28 ~vLEiaSGtGqHa~~F-A~~lP~l~WqPSD~~~~~~~sI~a~~ 69 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYF-AQALPHLTWQPSDPDDNLRPSIRAWI 69 (204)
T ss_pred eEEEEcCCccHHHHHH-HHHCCCCEEcCCCCChHHHhhHHHHH
Confidence 7999999999999885 56665544 3466666655444443
No 255
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=31.28 E-value=94 Score=26.99 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=29.3
Q ss_pred cceeeeccCCcccc--chHHHHhhc-----cC---eeEEecCcHHHHHHHHH
Q 026812 157 QHLVALDCGSGIGR--ITKNLLIRY-----FN---EVDLLEPVSHFLDAARE 198 (232)
Q Consensus 157 ~~~rALDcGAGIGR--VTk~lLl~~-----f~---~VDLVEPv~~Fle~Are 198 (232)
+..||+-+||++|- .|..||+.- .. +|.+.|.++..+++|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 56899999999995 233333332 22 89999999999999986
No 256
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=30.82 E-value=35 Score=32.26 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHH
Q 026812 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHF 192 (232)
Q Consensus 139 ~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~F 192 (232)
..|+..|..+ .....|.|+|||-++++...-.+ +-..|||-+++.-
T Consensus 169 d~ii~~ik~r-------~~~~vIaD~GCGEakiA~~~~~k-V~SfDL~a~~~~V 214 (325)
T KOG3045|consen 169 DVIIRKIKRR-------PKNIVIADFGCGEAKIASSERHK-VHSFDLVAVNERV 214 (325)
T ss_pred HHHHHHHHhC-------cCceEEEecccchhhhhhccccc-eeeeeeecCCCce
Confidence 3677888764 23468999999999999532222 2355666555543
No 257
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=30.54 E-value=1.3e+02 Score=28.39 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=43.3
Q ss_pred ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI 224 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF 224 (232)
....+||=-|-|=-|+.+|... -.+|-.+|.++..++.|++.+... ..++ .+++..+-++
T Consensus 21 ~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~------~~r~-~~~~~~F~~l 81 (310)
T PF01795_consen 21 GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF------DDRF-IFIHGNFSNL 81 (310)
T ss_dssp T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC------CTTE-EEEES-GGGH
T ss_pred CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc------cceE-EEEeccHHHH
Confidence 4589999999999999988764 279999999999999999988542 2455 6676665544
No 258
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.70 E-value=42 Score=33.13 Aligned_cols=59 Identities=24% Similarity=0.337 Sum_probs=35.7
Q ss_pred cccchHHHHhhc-cCeeEEec---Cc------HHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812 168 IGRITKNLLIRY-FNEVDLLE---PV------SHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH 231 (232)
Q Consensus 168 IGRVTk~lLl~~-f~~VDLVE---Pv------~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD 231 (232)
-||.|+.|+-.+ |++|.+|- |. ++|+..|.+-+.... -..|+.+ +|.|--.|.-.++||
T Consensus 270 ~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~Le----LPyRvv~-lctGDlgf~a~kkYD 338 (429)
T COG0172 270 AGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELE----LPYRVVN-LCTGDLGFSAAKKYD 338 (429)
T ss_pred ccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhC----CCceEee-eccCCcCCcccCcee
Confidence 499999976555 87777763 33 345555555443311 1246533 787866676667887
No 259
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=28.95 E-value=50 Score=30.17 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=26.1
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHH
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFL 193 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fl 193 (232)
...++|+.|||+|-|+.-+-+....+|.+-|....+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~ 122 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVE 122 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHH
Confidence 3457999999999888655444567777766655443
No 260
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=28.91 E-value=43 Score=26.54 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=20.8
Q ss_pred eeccCCc-ccc-chHHHHhhccCeeEEecCc
Q 026812 161 ALDCGSG-IGR-ITKNLLIRYFNEVDLLEPV 189 (232)
Q Consensus 161 ALDcGAG-IGR-VTk~lLl~~f~~VDLVEPv 189 (232)
+|=+||| +|. +.++|....+.++.++|+.
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4556776 665 6677666667899999987
No 261
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=28.32 E-value=74 Score=27.81 Aligned_cols=41 Identities=22% Similarity=0.162 Sum_probs=35.9
Q ss_pred eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHh
Q 026812 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (232)
Q Consensus 160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l 200 (232)
+++|+=||+|-.+..|-.-.|+.|-++|.++..++..+.|+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~ 42 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF 42 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc
Confidence 58888899999998877777999999999999999999987
No 262
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.14 E-value=1.3e+02 Score=28.16 Aligned_cols=61 Identities=20% Similarity=0.088 Sum_probs=44.4
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI 224 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF 224 (232)
..|...=+|||+-|..-|+....+|.+.=-+.+..+.+.+.+... .....| .+++++|-+.
T Consensus 38 ~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~----~~~~~i-~~~~lDLssl 98 (314)
T KOG1208|consen 38 ALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKG----KANQKI-RVIQLDLSSL 98 (314)
T ss_pred EEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc----CCCCce-EEEECCCCCH
Confidence 345555579999999999999999999999999999998877541 111222 4466666543
No 263
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=24.83 E-value=78 Score=30.81 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=47.0
Q ss_pred cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHh
Q 026812 133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (232)
Q Consensus 133 ~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l 200 (232)
+-+..-.+++++.++.... .+...+||.|||-|-.-+--..-...++-.+|..+.=+++|++..
T Consensus 97 i~lRnfNNwIKs~LI~~y~----~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RY 160 (389)
T KOG1975|consen 97 IFLRNFNNWIKSVLINLYT----KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRY 160 (389)
T ss_pred eehhhhhHHHHHHHHHHHh----ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHH
Confidence 4455667788877664432 345679999999998877666666788888888888899887643
No 264
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=24.52 E-value=88 Score=27.95 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=27.2
Q ss_pred eeeccCCc-cccchHHHHhhccCeeEEecCcHHHHHHHHHH
Q 026812 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (232)
Q Consensus 160 rALDcGAG-IGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~ 199 (232)
+|.=+||| +|+---..|+...-+|.++|.++..++.+++.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~ 45 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMEL 45 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 46667887 45433333445445899999999999877653
No 265
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=24.35 E-value=1.4e+02 Score=22.64 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=29.5
Q ss_pred ceeeeccCCccccchHHHHhhccCee-EEecCcHHHHHHHHHHh
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEV-DLLEPVSHFLDAARESL 200 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~V-DLVEPv~~Fle~Are~l 200 (232)
...++||++|++..+..+| ..++.| -.++|+..=+..+.+.+
T Consensus 44 D~IIiDtpp~~~~~~~~~l-~~aD~vlvvv~~~~~s~~~~~~~~ 86 (106)
T cd03111 44 DYVVVDLGRSLDEVSLAAL-DQADRVFLVTQQDLPSIRNAKRLL 86 (106)
T ss_pred CEEEEeCCCCcCHHHHHHH-HHcCeEEEEecCChHHHHHHHHHH
Confidence 4689999999999998855 455544 44677776666555433
No 266
>KOG2730 consensus Methylase [General function prediction only]
Probab=24.14 E-value=98 Score=28.65 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=45.1
Q ss_pred eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecC
Q 026812 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL 221 (232)
Q Consensus 159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgL 221 (232)
.+++|.=||.|--|..+.++ +..|-.||.++--+..|++|+... |- .+|| +|.|-.+
T Consensus 96 ~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiY---GI-~~rI-tFI~GD~ 152 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVY---GV-PDRI-TFICGDF 152 (263)
T ss_pred chhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceee---cC-Ccee-EEEechH
Confidence 57999999999999987776 569999999999999999998552 11 2466 7777654
No 267
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=23.59 E-value=1.1e+02 Score=28.38 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccC-eeEEecCcHHHHHHHHH
Q 026812 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARE 198 (232)
Q Consensus 139 ~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~-~VDLVEPv~~Fle~Are 198 (232)
|.||++|... .-...++|+=|||=-+++.. .+-++ -|-+|||+-+-+..|++
T Consensus 123 R~~l~~l~~~-------~~e~VivDtEAGiEHfgRg~-~~~vD~vivVvDpS~~sl~taer 175 (255)
T COG3640 123 RRLLRHLILN-------RYEVVIVDTEAGIEHFGRGT-IEGVDLVIVVVDPSYKSLRTAER 175 (255)
T ss_pred HHHHHHHhcc-------cCcEEEEecccchhhhcccc-ccCCCEEEEEeCCcHHHHHHHHH
Confidence 6777777652 23468999999997777663 34454 55678999999998874
No 268
>PRK13699 putative methylase; Provisional
Probab=23.33 E-value=1.5e+02 Score=26.15 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=35.8
Q ss_pred cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
....|||+=||+|..... -.+.--..-.+|.++.+++.|.+.+..
T Consensus 163 ~g~~vlDpf~Gsgtt~~a-a~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVA-ALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCEEEeCCCCCCHHHHH-HHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 346899999999998865 344456888999999999999877643
No 269
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=23.17 E-value=1.1e+02 Score=28.29 Aligned_cols=42 Identities=19% Similarity=0.096 Sum_probs=33.4
Q ss_pred ceeeeccCCcc-ccchHHHHhhcc-CeeEEecCcHHHHHHHHHH
Q 026812 158 HLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARES 199 (232)
Q Consensus 158 ~~rALDcGAGI-GRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~ 199 (232)
..++|..|||. |..+..++..+. .+|..++.++..++.+++.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 45789999987 888887665554 3699999999999888875
No 270
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=23.16 E-value=58 Score=29.42 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=30.3
Q ss_pred hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHH
Q 026812 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSH 191 (232)
Q Consensus 137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~ 191 (232)
-|+..++-|..............++||+||=...-... -...|+ |+.+|.++.
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s-~~~~fd-vt~IDLns~ 83 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS-TSGWFD-VTRIDLNSQ 83 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCccc-ccCcee-eEEeecCCC
Confidence 45555555554322222223347999999964443322 235676 999998873
No 271
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=22.75 E-value=1.9e+02 Score=27.65 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=47.9
Q ss_pred ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812 158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI 224 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF 224 (232)
....+||=-|-|--|+.+|.++- .++..+|.++..++.|++.+... .+|+ .+++..+-++
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~------~~r~-~~v~~~F~~l 85 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF------DGRV-TLVHGNFANL 85 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc------CCcE-EEEeCcHHHH
Confidence 46899999999999999998874 68999999999999999987441 2454 6666665544
No 272
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=22.39 E-value=1.3e+02 Score=24.14 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=32.1
Q ss_pred ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHH
Q 026812 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~ 199 (232)
...++||++|++..+..+|..--.-|-.++|....++.+...
T Consensus 96 D~iiiD~~~~~~~~~~~~l~~ad~viv~~~~~~~~i~~~~~~ 137 (195)
T PF01656_consen 96 DYIIIDTPPGLSDPVRNALAAADYVIVPIEPDPSSIEGAERL 137 (195)
T ss_dssp SEEEEEECSSSSHHHHHHHHTSSEEEEEEESSHHHHHHHHHH
T ss_pred cceeecccccccHHHHHHHHhCceeeeecCCcHHHHHHHHHH
Confidence 458999999999998876654435677789988887777643
No 273
>KOG2094 consensus Predicted DNA damage inducible protein [Replication, recombination and repair]
Probab=21.94 E-value=55 Score=32.29 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=24.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc
Q 026812 130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY 179 (232)
Q Consensus 130 vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~ 179 (232)
+-..|-.+...|++.|+.+. =.||||||...|.-+
T Consensus 267 ~i~~dr~aim~F~kdLPvRk---------------V~GIGrV~E~qLkal 301 (490)
T KOG2094|consen 267 VIPNDRIAIMKFMKDLPVRK---------------VSGIGRVTEQQLKAL 301 (490)
T ss_pred EecccHHHHHHHHhcCCccc---------------ccchhHHHHHHHHhc
Confidence 33455556678888776632 258999999988754
No 274
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=21.79 E-value=64 Score=29.26 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=17.1
Q ss_pred cceeeeccCCccccchHHHHhhcc
Q 026812 157 QHLVALDCGSGIGRITKNLLIRYF 180 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~lLl~~f 180 (232)
+..++|||||-+|.-|. +--+.+
T Consensus 69 p~~~VlD~G~APGsWsQ-Vavqr~ 91 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQ-VAVQRV 91 (232)
T ss_pred CCCEEEEccCCCChHHH-HHHHhh
Confidence 45799999999998774 444443
No 275
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=20.90 E-value=57 Score=29.54 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=17.3
Q ss_pred ceeeeccCCccccchHHHHhhc--cCeeEEecCcH
Q 026812 158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVS 190 (232)
Q Consensus 158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~ 190 (232)
...|.|.|||-+++++. +.+. +-.-|||-.++
T Consensus 73 ~~viaD~GCGdA~la~~-~~~~~~V~SfDLva~n~ 106 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKA-VPNKHKVHSFDLVAPNP 106 (219)
T ss_dssp TS-EEEES-TT-HHHHH---S---EEEEESS-SST
T ss_pred CEEEEECCCchHHHHHh-cccCceEEEeeccCCCC
Confidence 46899999999999976 3332 23445555544
No 276
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.77 E-value=1.2e+02 Score=27.19 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=27.1
Q ss_pred eeeccCCc-cccchHHHHhhccCeeEEecCcHHHHHHHHHH
Q 026812 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (232)
Q Consensus 160 rALDcGAG-IGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~ 199 (232)
++.=+||| .|+---..|+....+|.++|+++.-++.+++.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~ 45 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKER 45 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 45556777 34333334555556999999999988888654
No 277
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=20.39 E-value=49 Score=31.67 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=55.1
Q ss_pred cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812 123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA 201 (232)
Q Consensus 123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~ 201 (232)
+|+|--+..++|=-+-...+..+..... .....+|=+|-|=|-|-+.+..+- +..|+++|....-++..++++.
T Consensus 92 vlDgviqlte~de~~Yqemi~~l~l~s~-----~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p 166 (337)
T KOG1562|consen 92 VLDGVIQLTERDEFAYQEMIAHLALCSH-----PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLP 166 (337)
T ss_pred eeCCeeeCCccccccceeeeeccccccC-----CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhH
Confidence 6777777777773333455555443322 345789999999999987765553 6899999999999999998875
Q ss_pred C
Q 026812 202 P 202 (232)
Q Consensus 202 ~ 202 (232)
.
T Consensus 167 ~ 167 (337)
T KOG1562|consen 167 T 167 (337)
T ss_pred H
Confidence 4
No 278
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=20.33 E-value=83 Score=31.67 Aligned_cols=46 Identities=26% Similarity=0.276 Sum_probs=34.4
Q ss_pred cceeeeccCCccccchHH--HHhhc-cCeeEEecCcHHHHHHHHHHhCC
Q 026812 157 QHLVALDCGSGIGRITKN--LLIRY-FNEVDLLEPVSHFLDAARESLAP 202 (232)
Q Consensus 157 ~~~rALDcGAGIGRVTk~--lLl~~-f~~VDLVEPv~~Fle~Are~l~~ 202 (232)
++..+.|.|.|+|-.+-- .|-+. -..+++||++..|+.....++..
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~ 248 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD 248 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC
Confidence 456788899998876632 12222 47899999999999999888765
Done!