Query 026813
Match_columns 232
No_of_seqs 109 out of 476
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 22:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z2q_B Coat protein gamma; wil 24.2 69 0.0023 18.5 2.7 38 178-219 4-42 (44)
2 1nov_D Nodamura virus coat pro 19.7 96 0.0033 18.0 2.7 38 178-219 4-42 (44)
3 1bde_A VPR protein; AIDS, HIV, 15.9 39 0.0013 18.8 0.4 19 17-35 2-20 (35)
4 3bpo_A Interleukin 13; IL4, IL 11.7 1.7E+02 0.0059 20.9 2.9 29 45-73 93-121 (127)
5 3g43_E Voltage-dependent L-typ 11.6 3.5E+02 0.012 17.9 4.8 18 178-195 35-52 (81)
6 2kxa_A Haemagglutinin HA2 chai 11.3 1.1E+02 0.0037 16.1 1.3 10 211-220 1-10 (30)
7 2db7_A Hairy/enhancer-OF-split 9.9 1.8E+02 0.0063 18.2 2.3 29 9-37 26-58 (64)
8 1xl3_C Protein type A, secreti 6.4 4.4E+02 0.015 17.8 3.1 17 178-194 66-82 (92)
9 1t01_B Talin 1; five helix bun 6.3 2.5E+02 0.0086 13.8 1.3 11 210-220 9-19 (26)
10 3lb6_A Interleukin-13, IL-13; 6.3 5.6E+02 0.019 18.4 3.7 47 19-65 74-131 (132)
No 1
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=24.25 E-value=69 Score=18.53 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhHHHHHHhhcccCCC-CccCccchhhhhHHHHH
Q 026813 178 NERSLALVKSAMDIVVAVGLLQLAP-KKVTPRVTGAFGFVTSL 219 (232)
Q Consensus 178 ~~~~l~lv~~~~D~~i~~~~l~~~~-~~~~~~~vG~~G~iSsl 219 (232)
+|++.++++...-... .++ || +-...|+-|+.++++++
T Consensus 4 WErVk~ilks~l~a~S---~iP-GPVG~~asGi~~l~~l~~~l 42 (44)
T 2z2q_B 4 WERVKSIIKSSLAAAS---NIP-GPIGVAASGISGLSALFEGF 42 (44)
T ss_pred HHHHHHHHHHHHHHHh---cCC-CchhHHHHhHHHHHHHHHHh
Confidence 4566666666544333 332 33 33566777777777664
No 2
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=19.65 E-value=96 Score=17.95 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhHHHHHHhhcccCCC-CccCccchhhhhHHHHH
Q 026813 178 NERSLALVKSAMDIVVAVGLLQLAP-KKVTPRVTGAFGFVTSL 219 (232)
Q Consensus 178 ~~~~l~lv~~~~D~~i~~~~l~~~~-~~~~~~~vG~~G~iSsl 219 (232)
+|++..+++...-+.. .++ || +....|+-|+.++++++
T Consensus 4 WErVk~ilks~l~~aS---~iP-GPVG~~asGi~gl~~l~~~~ 42 (44)
T 1nov_D 4 WERVRSILKSGLNFAS---TIP-GPVGVAATGIKGIIETIGSL 42 (44)
T ss_pred HHHHHHHHHHHHHHHh---cCC-CchhHHHHhHHHHHHHHHHh
Confidence 4566666666554433 232 33 33456666666666654
No 3
>1bde_A VPR protein; AIDS, HIV, viral protein, VPR fragment, helix; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1dsj_A
Probab=15.90 E-value=39 Score=18.75 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=14.6
Q ss_pred HhccCchHHHHHHHHHHHH
Q 026813 17 YLNKAEARDKICRAIQYGS 35 (232)
Q Consensus 17 ~l~t~~GRDK~~r~lQY~~ 35 (232)
|-+|.+|-+.+.|++|-..
T Consensus 2 yGDTw~GveaiiriLQq~L 20 (35)
T 1bde_A 2 YGDTWAGVEAIIRILQQLL 20 (35)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHH
Confidence 4567888889999988653
No 4
>3bpo_A Interleukin 13; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 1ijz_A 1ik0_A 3g6d_A 3l5w_I 3l5x_A* 3l5y_A 1ga3_A
Probab=11.72 E-value=1.7e+02 Score=20.88 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=18.2
Q ss_pred hHHhHHHhhhHHHHHHHhhhchHHHHHhh
Q 026813 45 TAQNVDKSTSLARKVFRLFKFVNDLHALI 73 (232)
Q Consensus 45 ~~~~l~~~ls~aRk~~Rl~k~l~~~~~~~ 73 (232)
.+.=++..+.-.|++||=|+|-+.|..+.
T Consensus 93 v~qfik~LL~~~r~~fR~g~f~~~~~~~~ 121 (127)
T 3bpo_A 93 VAQFVKDLLLHLKKLFREGQFNRNFESII 121 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHHHHHHHHHccCchhcccceeE
Confidence 35567888999999999999988876654
No 5
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=11.65 E-value=3.5e+02 Score=17.86 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhHHHHHHh
Q 026813 178 NERSLALVKSAMDIVVAV 195 (232)
Q Consensus 178 ~~~~l~lv~~~~D~~i~~ 195 (232)
...+-.+-+...|.++|-
T Consensus 35 ~~iWp~~~~k~lD~lvpp 52 (81)
T 3g43_E 35 KKIWKRTSMKLLDQVVPP 52 (81)
T ss_dssp HHHHHHHHHHHHHHCC--
T ss_pred HHHCcccChhhcccccCC
Confidence 344456778899999884
No 6
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=11.32 E-value=1.1e+02 Score=16.12 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=6.4
Q ss_pred hhhhHHHHHH
Q 026813 211 GAFGFVTSLI 220 (232)
Q Consensus 211 G~~G~iSsli 220 (232)
|++|.|++.|
T Consensus 1 GlFGAIAGfi 10 (30)
T 2kxa_A 1 GLFGAIAGFI 10 (30)
T ss_dssp CHHHHHHHHH
T ss_pred Ccchhhhhhh
Confidence 4667776665
No 7
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=9.85 E-value=1.8e+02 Score=18.22 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=19.4
Q ss_pred HHHHHHHHHhccCchHH----HHHHHHHHHHHH
Q 026813 9 AELALVVLYLNKAEARD----KICRAIQYGSKF 37 (232)
Q Consensus 9 ~~l~~~~~~l~t~~GRD----K~~r~lQY~~kl 37 (232)
+=+.++.+||++.+|.| .=.|+++....-
T Consensus 26 eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~ 58 (64)
T 2db7_A 26 ECLAEVARYLSIIEGLDASDPLRVRLVSHLNNY 58 (64)
T ss_dssp HHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHH
Confidence 34667888888888776 456666655543
No 8
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=6.40 E-value=4.4e+02 Score=17.81 Aligned_cols=17 Identities=18% Similarity=0.481 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhHHHHHH
Q 026813 178 NERSLALVKSAMDIVVA 194 (232)
Q Consensus 178 ~~~~l~lv~~~~D~~i~ 194 (232)
|+.+++.++++.|..|.
T Consensus 66 R~~lL~a~Q~AlD~aI~ 82 (92)
T 1xl3_C 66 RQNLLQMCQNAIDMAIE 82 (92)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56789999999999886
No 9
>1t01_B Talin 1; five helix bundle, cell adhesion, structural protein; 2.06A {Mus musculus}
Probab=6.29 E-value=2.5e+02 Score=13.83 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=6.9
Q ss_pred hhhhhHHHHHH
Q 026813 210 TGAFGFVTSLI 220 (232)
Q Consensus 210 vG~~G~iSsli 220 (232)
-|++|.+|-++
T Consensus 9 kglagavsell 19 (26)
T 1t01_B 9 KGLAGAVSELL 19 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhHHHHHHHH
Confidence 36677777654
No 10
>3lb6_A Interleukin-13, IL-13; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_B*
Probab=6.28 E-value=5.6e+02 Score=18.35 Aligned_cols=47 Identities=21% Similarity=0.101 Sum_probs=31.2
Q ss_pred ccCchHHHHHHHHHHHHHHh--cc-----CCc----chHHhHHHhhhHHHHHHHhhhc
Q 026813 19 NKAEARDKICRAIQYGSKFL--SD-----GQP----GTAQNVDKSTSLARKVFRLFKF 65 (232)
Q Consensus 19 ~t~~GRDK~~r~lQY~~kll--~~-----~~~----~~~~~l~~~ls~aRk~~Rl~k~ 65 (232)
++.....|..|+++..|.=- +. ..+ |.+.=++.-+.-.|++||-|+|
T Consensus 74 S~C~aIqktqR~L~~lc~~k~~a~qVss~~~~DTKIEv~qfik~LL~~~r~~fr~g~f 131 (132)
T 3lb6_A 74 SGCSAIEKTQRMLSGFCPHKVSAGQFSSLHVRDTKIEVAQFVKDLLLHLKKLFREGRF 131 (132)
T ss_dssp TTCSTTHHHHHHHHHHSSSCCCTTCCSSCCCCSEEEEHHHHHHHHHHHHHHHHHTTBC
T ss_pred cccHHHHHHHHHHhcccCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHccCCC
Confidence 34556778888888776432 11 112 3355678888899999999875
Done!