Query 026813
Match_columns 232
No_of_seqs 109 out of 476
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 22:49:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026813.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026813hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1be3k_ f.23.15.1 (K:) Subunit 27.7 9.6 0.0007 17.9 0.8 11 208-218 11-21 (26)
2 d1jt6a2 a.121.1.1 (A:73-187) M 8.3 2.5E+02 0.019 17.7 6.1 50 170-224 40-89 (115)
3 d1kbha_ a.153.1.1 (A:) Nuclear 7.4 1.9E+02 0.014 15.5 2.9 24 8-31 7-32 (47)
4 d2gnoa1 a.80.1.1 (A:209-306) g 7.2 2.5E+02 0.019 16.8 4.7 31 9-40 23-53 (98)
5 d1mkma1 a.4.5.33 (A:1-75) Tran 7.1 1.3E+02 0.0094 17.5 2.3 47 24-73 4-51 (75)
6 d1bu2a2 a.74.1.1 (A:149-250) V 6.0 2E+02 0.014 17.4 2.7 28 193-220 33-60 (102)
7 d1h6pa_ a.146.1.1 (A:) TRF2 {H 6.0 1.3E+02 0.0094 21.7 2.1 33 8-40 38-71 (203)
8 d1xl3c1 a.243.1.1 (C:2-92) Tye 5.7 2.1E+02 0.015 17.8 2.7 17 178-194 65-81 (91)
9 d1kcfa1 a.140.2.1 (A:3-38) Mit 4.9 2.3E+02 0.017 13.8 2.2 12 29-40 5-16 (36)
10 d2pgga1 e.8.1.4 (A:31-804) Vir 4.9 3.5E+02 0.025 22.8 4.4 45 18-62 578-624 (774)
No 1
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.73 E-value=9.6 Score=17.87 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=7.7
Q ss_pred cchhhhhHHHH
Q 026813 208 RVTGAFGFVTS 218 (232)
Q Consensus 208 ~~vG~~G~iSs 218 (232)
|.||..|++|+
T Consensus 11 gavgavglvsa 21 (26)
T d1be3k_ 11 GAVGAVGLVSA 21 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhcceeEEee
Confidence 45777777775
No 2
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=8.26 E-value=2.5e+02 Score=17.69 Aligned_cols=50 Identities=6% Similarity=-0.088 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhcccCCCCccCccchhhhhHHHHHHHHHH
Q 026813 170 YQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQ 224 (232)
Q Consensus 170 ~~~~~~~~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~~~~vG~~G~iSslig~y~ 224 (232)
..+.+++.+..+.++++.+.+=.+.-+. .+..+.-+....+++++-|++.
T Consensus 40 ~~~~i~~lr~~y~~~~~~Ii~eGi~~G~-----f~~~d~~~~~~~il~~lng~~~ 89 (115)
T d1jt6a2 40 INEKMNKLENKYIDAYHVIFKEGNLNGE-----WSINDVNAVSKIAANAVNGIVT 89 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTS-----CCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCc-----eeccCHHHHHHHHHHHHHHHHH
Confidence 3445555566677777777777665322 3334556667778888888875
No 3
>d1kbha_ a.153.1.1 (A:) Nuclear receptor coactivator ACTR {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.42 E-value=1.9e+02 Score=15.47 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhccCc--hHHHHHHHH
Q 026813 8 RAELALVVLYLNKAE--ARDKICRAI 31 (232)
Q Consensus 8 ~~~l~~~~~~l~t~~--GRDK~~r~l 31 (232)
+.-++++..+|+.++ |.+-+=|.+
T Consensus 7 ~aLldQL~s~L~~~D~~~LeEiDrAL 32 (47)
T d1kbha_ 7 RALLDQLHTLLSNTDATGLEEIDRAL 32 (47)
T ss_dssp HHHHHHHHHHTTSSCCTTHHHHHHHT
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHh
Confidence 457899999999777 766555543
No 4
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=7.17 E-value=2.5e+02 Score=16.77 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=25.1
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHhcc
Q 026813 9 AELALVVLYLNKAEARDKICRAIQYGSKFLSD 40 (232)
Q Consensus 9 ~~l~~~~~~l~t~~GRDK~~r~lQY~~kll~~ 40 (232)
++++-|-...++..|||-++ ++|-..|++.+
T Consensus 23 ~ff~lfdqv~ntitg~dafl-liq~~~riilh 53 (98)
T d2gnoa1 23 EFFALFDQVTNTITGKDAFL-LIQRLTRIILH 53 (98)
T ss_dssp GHHHHHHHHHHHSCTHHHHH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcccchHHH-HHHHHHHHhcc
Confidence 46777778899999999876 67888888765
No 5
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=7.10 E-value=1.3e+02 Score=17.48 Aligned_cols=47 Identities=4% Similarity=0.120 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhccCCcchHHhHHHhhhHHH-HHHHhhhchHHHHHhh
Q 026813 24 RDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLAR-KVFRLFKFVNDLHALI 73 (232)
Q Consensus 24 RDK~~r~lQY~~kll~~~~~~~~~~l~~~ls~aR-k~~Rl~k~l~~~~~~~ 73 (232)
-||.++++.+++.- ..|-....+...++..| .+.|+.+.+.....+.
T Consensus 4 l~r~l~IL~~~a~~---~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~ 51 (75)
T d1mkma1 4 LKKAFEILDFIVKN---PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVL 51 (75)
T ss_dssp HHHHHHHHHHHHHC---SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhC---CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 46777777776532 33333445555555444 2445555554433333
No 6
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=6.04 E-value=2e+02 Score=17.43 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=19.1
Q ss_pred HHhhcccCCCCccCccchhhhhHHHHHH
Q 026813 193 VAVGLLQLAPKKVTPRVTGAFGFVTSLI 220 (232)
Q Consensus 193 i~~~~l~~~~~~~~~~~vG~~G~iSsli 220 (232)
++-..++++..-++|+.+...|++..+=
T Consensus 33 ickaliqpniall~p~licaggllttie 60 (102)
T d1bu2a2 33 ICKALIQPNIALLSPGLICAGGLLTTIE 60 (102)
T ss_dssp HHHHTTSTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCccccCcceeecccceEEEe
Confidence 3333455554447999999999988763
No 7
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.97 E-value=1.3e+02 Score=21.74 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=22.0
Q ss_pred HHHHHH-HHHHhccCchHHHHHHHHHHHHHHhcc
Q 026813 8 RAELAL-VVLYLNKAEARDKICRAIQYGSKFLSD 40 (232)
Q Consensus 8 ~~~l~~-~~~~l~t~~GRDK~~r~lQY~~kll~~ 40 (232)
++.+.- ++..++....-+|.+|+.|+.+|+-.+
T Consensus 38 rdi~eall~~~~~~~~~~~kti~i~QfL~RI~eG 71 (203)
T d1h6pa_ 38 RDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEG 71 (203)
T ss_dssp HHHHHHHTTSCCC----CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCccccccchhhHHHHHHHHHHHHcC
Confidence 444554 446777778889999999999999776
No 8
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=5.72 E-value=2.1e+02 Score=17.78 Aligned_cols=17 Identities=18% Similarity=0.481 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhHHHHHH
Q 026813 178 NERSLALVKSAMDIVVA 194 (232)
Q Consensus 178 ~~~~l~lv~~~~D~~i~ 194 (232)
++.+++.++++.|..|.
T Consensus 65 R~~lL~a~Q~ALD~aI~ 81 (91)
T d1xl3c1 65 RQNLLQMCQNAIDMAIE 81 (91)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56789999999999886
No 9
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=4.90 E-value=2.3e+02 Score=13.77 Aligned_cols=12 Identities=17% Similarity=-0.089 Sum_probs=7.0
Q ss_pred HHHHHHHHHhcc
Q 026813 29 RAIQYGSKFLSD 40 (232)
Q Consensus 29 r~lQY~~kll~~ 40 (232)
-++|..|++-.-
T Consensus 5 sflqhickltgl 16 (36)
T d1kcfa1 5 SFLQHICKLTGL 16 (36)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhhcc
Confidence 356666666543
No 10
>d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious bursal disease virus [TaxId: 10995]}
Probab=4.87 E-value=3.5e+02 Score=22.83 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=33.4
Q ss_pred hccCchHHHHHHHHHHHHHHhcc--CCcchHHhHHHhhhHHHHHHHh
Q 026813 18 LNKAEARDKICRAIQYGSKFLSD--GQPGTAQNVDKSTSLARKVFRL 62 (232)
Q Consensus 18 l~t~~GRDK~~r~lQY~~kll~~--~~~~~~~~l~~~ls~aRk~~Rl 62 (232)
+.+..|-+-+++++||-+-.+.+ ++|-..++++.+-+..|+-+|-
T Consensus 578 l~~k~gaeqayk~vryeAlrmVGgwnyPli~~a~~~~~~~~r~~l~~ 624 (774)
T d2pgga1 578 LKSKVGIEQAYKVVRYEALRLVGGWNYPLLNKACKNNAGAARRHLEA 624 (774)
T ss_dssp -----CHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHh
Confidence 45667889999999999877754 5677777888889999998885
Done!