BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026814
MQTLTLTRATNLFSQHQDDRYLGLSNHCLCFLSVHPASPPPLLASKRHRLKLAFVAKAAD
STQPSSATTSADKTLVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALM
LTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHL
DEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRFKHECFGCLSSPKTS

High Scoring Gene Products

Symbol, full name Information P value
APE1
AT5G38660 		protein from Arabidopsis thaliana 3.2e-58

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026814
        (232 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2159888 - symbol:APE1 "AT5G38660" species:3702...   598  3.2e-58   1


>TAIR|locus:2159888 [details] [associations]
            symbol:APE1 "AT5G38660" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0016020
            "membrane" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0009965
            "leaf morphogenesis" evidence=RCA] [GO:0010207 "photosystem II
            assembly" evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009941 GO:GO:0009535
            EMBL:BT024514 IPI:IPI00517629 RefSeq:NP_198682.3 UniGene:At.30396
            STRING:Q2HIR7 PaxDb:Q2HIR7 PRIDE:Q2HIR7 EnsemblPlants:AT5G38660.1
            GeneID:833856 KEGG:ath:AT5G38660 TAIR:At5g38660 eggNOG:NOG09668
            HOGENOM:HOG000232636 InParanoid:Q2HIR7 PhylomeDB:Q2HIR7
            ProtClustDB:CLSN2680374 Genevestigator:Q2HIR7 InterPro:IPR021275
            Pfam:PF11016 Uniprot:Q2HIR7
        Length = 286

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 117/173 (67%), Positives = 135/173 (78%)

Query:    46 KRHRLKLAFVAKAADSTQPSSATTSADKTLVPDDEFTLAKXXXXXXXXXXXXXXXXXXXX 105
             KR  LKL  V +AADST  S +  S D+TL+PDDEFTLAK                    
Sbjct:    54 KREVLKLDVVGRAADSTSSSPSVASGDRTLIPDDEFTLAKISFGVIGLGLGVSLLSYGFG 113

Query:   106 AYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVPCLTYSDAQSLRETCATPILKQV 165
             AYF+I PG+EWSA+MLTYGFPL++IGMALKYAELKPVPCL+YSDA  LRE+CATPIL QV
Sbjct:   114 AYFTILPGTEWSAIMLTYGFPLSIIGMALKYAELKPVPCLSYSDAVKLRESCATPILTQV 173

Query:   166 RNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRF 218
             RNDV R+RYGDEQHL+EALKRIFQYGLGGGIPRRSAP+LQ+IREEV L++ R+
Sbjct:   174 RNDVTRYRYGDEQHLEEALKRIFQYGLGGGIPRRSAPILQLIREEV-LTDGRY 225


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      232       212   0.00083  112 3  11 22  0.46    32
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  174 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.47u 0.12s 18.59t   Elapsed:  00:00:01
  Total cpu time:  18.47u 0.12s 18.59t   Elapsed:  00:00:01
  Start:  Sat May 11 06:37:09 2013   End:  Sat May 11 06:37:10 2013

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