BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026814
         (232 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AP9|A Chain A, Crystal Structure Of Acetylglutamate Kinase From
           Mycobacterium Tuberculosis Cdc1551
 pdb|2AP9|B Chain B, Crystal Structure Of Acetylglutamate Kinase From
           Mycobacterium Tuberculosis Cdc1551
 pdb|2AP9|C Chain C, Crystal Structure Of Acetylglutamate Kinase From
           Mycobacterium Tuberculosis Cdc1551
 pdb|2AP9|D Chain D, Crystal Structure Of Acetylglutamate Kinase From
           Mycobacterium Tuberculosis Cdc1551
 pdb|2AP9|E Chain E, Crystal Structure Of Acetylglutamate Kinase From
           Mycobacterium Tuberculosis Cdc1551
 pdb|2AP9|F Chain F, Crystal Structure Of Acetylglutamate Kinase From
           Mycobacterium Tuberculosis Cdc1551
          Length = 299

 Score = 31.2 bits (69), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 146 TYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRIF 188
           T+  AQ L E  A P LKQ+   V+  +YG     D+ L+R F
Sbjct: 6   THIKAQVLAE--ALPWLKQLHGKVVVVKYGGNAXTDDTLRRAF 46


>pdb|2PCE|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|C Chain C, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|D Chain D, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|E Chain E, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|F Chain F, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|G Chain G, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|2PCE|H Chain H, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
           LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
 pdb|3FV9|G Chain G, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|A Chain A, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|D Chain D, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|E Chain E, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|F Chain F, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|B Chain B, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|H Chain H, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
 pdb|3FV9|C Chain C, Crystal Structure Of Putative Mandelate
           RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
           Nubinhibens Ism Complexed With Magnesium
          Length = 386

 Score = 26.9 bits (58), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)

Query: 143 PCLTYSDAQSLRETCATPI----LKQVRNDVI 170
           PC ++++ +SLR  CA P+    L Q   D+I
Sbjct: 228 PCASWAETKSLRARCALPLLLDELIQTETDLI 259


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,962,891
Number of Sequences: 62578
Number of extensions: 204431
Number of successful extensions: 404
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 2
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)