BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026814
         (232 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q55403|Y575_SYNY3 Thylakoid membrane protein slr0575 OS=Synechocystis sp. (strain PCC
           6803 / Kazusa) GN=slr0575 PE=4 SV=1
          Length = 184

 Score = 80.5 bits (197), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 63/110 (57%), Gaps = 10/110 (9%)

Query: 83  LAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLT---YGFPLAVIGMALKYAEL 139
           L K+S   +GL +G  L   GF AY       +++ L L    YG PL + G+ALK AEL
Sbjct: 2   LPKISLAAVGLTVGGILTITGFVAY-----ALDYATLNLAGFFYGIPLVLGGLALKAAEL 56

Query: 140 KPVPCL--TYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRI 187
           KP+P    T     +LR   ATP   Q+R DV R+RYG E HLDE+L+R+
Sbjct: 57  KPIPFSQPTSEKIIALRNQLATPTQNQIRKDVTRYRYGQEAHLDESLERL 106


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,131,179
Number of Sequences: 539616
Number of extensions: 3392081
Number of successful extensions: 8109
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8104
Number of HSP's gapped (non-prelim): 6
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)