Query 026814
Match_columns 232
No_of_seqs 71 out of 73
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 13:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11016 DUF2854: Protein of u 100.0 1.3E-57 2.8E-62 377.7 8.7 118 102-226 1-120 (147)
2 PF11381 DUF3185: Protein of u 54.8 19 0.00041 26.6 3.5 46 88-134 3-58 (59)
3 PF12750 Maff2: Maff2 family; 49.1 8.5 0.00018 29.6 0.9 28 88-115 11-42 (70)
4 PF02392 Ycf4: Ycf4; InterPro 47.1 22 0.00047 31.5 3.3 48 88-135 21-78 (180)
5 PF04650 YSIRK_signal: YSIRK t 46.5 13 0.00029 23.7 1.4 22 79-100 5-26 (27)
6 PF02038 ATP1G1_PLM_MAT8: ATP1 42.8 14 0.00029 26.9 1.1 31 77-107 3-33 (50)
7 PF09656 PGPGW: Putative trans 41.0 32 0.00069 24.9 2.8 41 91-142 3-43 (53)
8 PF05915 DUF872: Eukaryotic pr 39.2 25 0.00055 28.5 2.3 29 82-110 40-68 (115)
9 PLN03094 Substrate binding sub 39.1 36 0.00078 32.6 3.7 56 77-132 74-141 (370)
10 COG4858 Uncharacterized membra 38.3 34 0.00073 31.3 3.2 38 89-134 99-141 (226)
11 TIGR01168 YSIRK_signal Gram-po 38.1 25 0.00055 23.9 1.8 25 79-103 9-33 (39)
12 PF12389 Peptidase_M73: Camely 36.9 10 0.00022 33.9 -0.4 33 83-115 6-38 (199)
13 PRK01637 hypothetical protein; 36.2 32 0.0007 30.5 2.7 39 75-113 193-231 (286)
14 PF04156 IncA: IncA protein; 29.9 49 0.0011 27.2 2.6 15 92-106 11-25 (191)
15 PF00361 Oxidored_q1: NADH-Ubi 28.9 75 0.0016 27.2 3.7 47 92-138 41-95 (270)
16 PF11286 DUF3087: Protein of u 28.4 85 0.0018 27.5 3.9 41 93-133 26-68 (165)
17 COG4669 EscJ Type III secretor 27.3 31 0.00067 32.0 1.1 49 134-187 73-121 (246)
18 PRK02542 photosystem I assembl 27.3 86 0.0019 28.1 3.8 62 74-135 11-85 (188)
19 PF07332 DUF1469: Protein of u 26.9 99 0.0021 23.6 3.7 12 159-170 105-116 (121)
20 PF14116 YyzF: YyzF-like prote 26.1 30 0.00065 24.6 0.6 27 177-211 3-30 (48)
21 PF11384 DUF3188: Protein of u 26.1 71 0.0015 22.7 2.5 36 96-131 3-39 (49)
22 PF10661 EssA: WXG100 protein 25.9 45 0.00097 28.0 1.7 25 84-109 115-139 (145)
23 PRK10692 hypothetical protein; 25.2 76 0.0017 25.7 2.8 36 88-126 9-46 (92)
24 PF06911 Senescence: Senescenc 23.1 25 0.00055 29.0 -0.2 17 163-179 134-150 (179)
25 PF10762 DUF2583: Protein of u 23.0 71 0.0015 25.7 2.3 36 88-126 9-46 (89)
26 PF10003 DUF2244: Integral mem 22.9 89 0.0019 25.4 2.9 21 117-137 36-56 (140)
27 PRK10535 macrolide transporter 22.4 68 0.0015 31.8 2.5 11 133-143 633-643 (648)
28 PF07613 DUF1576: Protein of u 22.0 87 0.0019 27.6 2.8 32 92-133 63-94 (183)
29 PF05152 DUF705: Protein of un 21.9 60 0.0013 30.8 1.9 43 146-188 135-180 (297)
30 PRK09400 secE preprotein trans 21.8 59 0.0013 23.9 1.5 20 90-109 34-53 (61)
31 CHL00036 ycf4 photosystem I as 21.7 98 0.0021 27.6 3.1 48 88-135 24-81 (184)
32 TIGR03068 srtB_sig_NPQTN sorta 21.7 73 0.0016 21.6 1.8 19 111-129 1-19 (33)
33 PF11241 DUF3043: Protein of u 21.7 59 0.0013 28.4 1.7 22 84-105 73-94 (170)
34 PF11127 DUF2892: Protein of u 21.5 1.3E+02 0.0028 21.1 3.1 35 93-132 14-48 (66)
35 cd00241 CDH_cytochrome Cellobi 21.2 68 0.0015 28.0 2.0 18 211-228 108-125 (184)
36 PRK09546 zntB zinc transporter 21.1 1.1E+02 0.0024 27.4 3.4 12 123-134 298-309 (324)
37 PRK04214 rbn ribonuclease BN/u 21.0 94 0.002 29.2 3.0 53 75-129 200-253 (412)
No 1
>PF11016 DUF2854: Protein of unknown function (DUF2854); InterPro: IPR021275 This family of proteins has no known function.
Probab=100.00 E-value=1.3e-57 Score=377.71 Aligned_cols=118 Identities=47% Similarity=0.688 Sum_probs=111.7
Q ss_pred hhhhhhhccCCCCcchhhhhhhhhhHHHHHhhhhccccCCCC--CCCchHHHHHHhhcCchHHHHhhhcccceecchhhh
Q 026814 102 YGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPVP--CLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQH 179 (232)
Q Consensus 102 vGf~AYf~~~p~anLSl~gffYGiPIlLgGLALK~AELkPvp--~~T~~~~~alRe~qAT~~q~Qvr~DVTRyRYGqeaH 179 (232)
|||+|||++++ |||++||||||||+||||||||||||||| |.|+++++++||+|||+||+|||+||||||||||||
T Consensus 1 ~Gf~aY~~~~a--~lsl~~ffYGiPilLgGlALK~aEL~Pvp~~~~~~~~~~~lRe~qat~~~~qlr~DVTR~RYGqeaH 78 (147)
T PF11016_consen 1 IGFVAYFTDNA--NLSLPGFFYGIPILLGGLALKYAELKPVPFSCTTSPEALALREQQATPTQNQLRKDVTRYRYGQEAH 78 (147)
T ss_pred CceeEEecCCC--ceeeehHHhhhHHHHHHHHHHHhcCCCCCcccCCHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHH
Confidence 69999999755 59999999999999999999999999999 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCcchhhheeeeecCceeEEEeeCccc
Q 026814 180 LDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRFKHECFGCL 226 (232)
Q Consensus 180 Ld~ALerLf~~gL~~gi~d~~~PqL~~IrE~~~eg~Y~Lvle~~~~~ 226 (232)
||+|||+| ||++ +|+++|+|++|||+++||+|+|+|++..+.
T Consensus 79 Le~aL~~L---~L~~--~~~~~P~L~~irE~~~~g~Y~LvL~F~s~~ 120 (147)
T PF11016_consen 79 LEEALERL---GLSW--DDDEPPQLQGIREEVIDGAYGLVLEFESPA 120 (147)
T ss_pred HHHHHHHh---cCCC--CcccChhhhheeeeeeCCceEEEEEEecCC
Confidence 99999999 7754 899999999999999999999999987543
No 2
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=54.81 E-value=19 Score=26.58 Aligned_cols=46 Identities=30% Similarity=0.348 Sum_probs=33.3
Q ss_pred cchhhhhhhHHHHHhhhhhhhc----------cCCCCcchhhhhhhhhhHHHHHhhh
Q 026814 88 FGVIGLGLGISLLSYGFGAYFS----------IFPGSEWSALMLTYGFPLAVIGMAL 134 (232)
Q Consensus 88 lGtlgl~vG~iLtvvGf~AYf~----------~~p~anLSl~gffYGiPIlLgGLAL 134 (232)
+|-+++++|.+|+.+|.-+|-+ +.|+ +=....++=|.--.+.|+.+
T Consensus 3 igi~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t-~~t~~~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 3 IGIALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPT-DKTIWYLIGGAVAVIVGLFL 58 (59)
T ss_pred eeehHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCC-chhHHHHHhHHHHHHHHHhh
Confidence 3567889999999999988754 4443 44566667777778888764
No 3
>PF12750 Maff2: Maff2 family; InterPro: IPR024272 This family of short membrane proteins are related to the protein Maff2. Maff2 lies just outside the direct repeats of a tetracycline resistance transposable element. This protein family may contain transmembrane helices.
Probab=49.05 E-value=8.5 Score=29.65 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.2
Q ss_pred cchhhhhhhHHHHHhhhh----hhhccCCCCc
Q 026814 88 FGVIGLGLGISLLSYGFG----AYFSIFPGSE 115 (232)
Q Consensus 88 lGtlgl~vG~iLtvvGf~----AYf~~~p~an 115 (232)
+-+++..+|+-|-+||.+ +|-+|||+++
T Consensus 11 LktlV~alGaGLgvWGviNLlEGYGnDNpgak 42 (70)
T PF12750_consen 11 LKTLVVALGAGLGVWGVINLLEGYGNDNPGAK 42 (70)
T ss_pred HHHHHHHHccchhhhhhhhhhhhcCCCCcchh
Confidence 567888999999999987 7999999854
No 4
>PF02392 Ycf4: Ycf4; InterPro: IPR003359 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA (IPR005137 from INTERPRO) [], Ycf3 [, ], and Ycf4 []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. ; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009579 thylakoid, 0016021 integral to membrane
Probab=47.08 E-value=22 Score=31.46 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=35.3
Q ss_pred cchhhhhhhHHHHHhhhhhhhccC--CC---Cc-----chhhhhhhhhhHHHHHhhhh
Q 026814 88 FGVIGLGLGISLLSYGFGAYFSIF--PG---SE-----WSALMLTYGFPLAVIGMALK 135 (232)
Q Consensus 88 lGtlgl~vG~iLtvvGf~AYf~~~--p~---an-----LSl~gffYGiPIlLgGLALK 135 (232)
.+.+++.-|...+.+|+-.|+..| |- .+ =-++|.|||+-=++.++=|=
T Consensus 21 wa~ii~~G~lGFll~G~sSYl~~nll~~~~~~~i~FiPQGivM~FYGi~gl~ls~Ylw 78 (180)
T PF02392_consen 21 WAFIIFLGGLGFLLVGISSYLGKNLLPFSDSSQIPFIPQGIVMCFYGIAGLFLSFYLW 78 (180)
T ss_pred HHHHHHHhhHHHHHhHHHHHhCCCccccCCcceeeEECccHHHHHHHHHHHHHHHHHh
Confidence 566777777788999999999754 10 01 13679999998888887664
No 5
>PF04650 YSIRK_signal: YSIRK type signal peptide; InterPro: IPR005877 Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. ; GO: 0016020 membrane
Probab=46.52 E-value=13 Score=23.69 Aligned_cols=22 Identities=23% Similarity=0.532 Sum_probs=17.8
Q ss_pred CCceecccccchhhhhhhHHHH
Q 026814 79 DEFTLAKVSFGVIGLGLGISLL 100 (232)
Q Consensus 79 ~~f~l~kiSlGtlgl~vG~iLt 100 (232)
.-|++||+|.|..-..+|..++
T Consensus 5 ~rysIRK~svGv~SV~ig~~~~ 26 (27)
T PF04650_consen 5 QRYSIRKLSVGVASVLIGTLFF 26 (27)
T ss_pred cEEeEEccccchhHHHHHHHHh
Confidence 4699999999988888777654
No 6
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=42.81 E-value=14 Score=26.89 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=26.4
Q ss_pred cCCCceecccccchhhhhhhHHHHHhhhhhh
Q 026814 77 PDDEFTLAKVSFGVIGLGLGISLLSYGFGAY 107 (232)
Q Consensus 77 ~d~~f~l~kiSlGtlgl~vG~iLtvvGf~AY 107 (232)
+|++|.-+.=|+-.-|++.+++|.++|.+--
T Consensus 3 e~~pF~YDy~tLrigGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 3 EDDPFYYDYETLRIGGLIFAGVLFILGILII 33 (50)
T ss_dssp CCSGGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCccchhHhhccchHHHHHHHHHHHHHH
Confidence 4688988888999999999999999998644
No 7
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=40.99 E-value=32 Score=24.94 Aligned_cols=41 Identities=22% Similarity=0.103 Sum_probs=29.5
Q ss_pred hhhhhhHHHHHhhhhhhhccCCCCcchhhhhhhhhhHHHHHhhhhccccCCC
Q 026814 91 IGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALKYAELKPV 142 (232)
Q Consensus 91 lgl~vG~iLtvvGf~AYf~~~p~anLSl~gffYGiPIlLgGLALK~AELkPv 142 (232)
+..++|.++.+.|++.-+.--| |++++++|+++=+.|.+-+
T Consensus 3 ~v~v~G~~lv~~Gii~~~lPGp-----------G~l~i~~GL~iLa~ef~wA 43 (53)
T PF09656_consen 3 GVGVLGWVLVVAGIIMLPLPGP-----------GLLVIFLGLAILATEFPWA 43 (53)
T ss_pred hhhhHHHHHHHHHHHhhcCCCC-----------cHHHHHHHHHHHHHhhHHH
Confidence 4568899999999887655433 5677788888877775443
No 8
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=39.18 E-value=25 Score=28.50 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=24.7
Q ss_pred eecccccchhhhhhhHHHHHhhhhhhhcc
Q 026814 82 TLAKVSFGVIGLGLGISLLSYGFGAYFSI 110 (232)
Q Consensus 82 ~l~kiSlGtlgl~vG~iLtvvGf~AYf~~ 110 (232)
..+.+-++.+++++|.+|+++|+.-+++.
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36677889999999999999999888774
No 9
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=39.07 E-value=36 Score=32.62 Aligned_cols=56 Identities=27% Similarity=0.197 Sum_probs=29.1
Q ss_pred cCCCceecccccchhhh-hhhHHHHHhhhhhhhccCCC------C----cc-hhhhhhhhhhHHHHHh
Q 026814 77 PDDEFTLAKVSFGVIGL-GLGISLLSYGFGAYFSIFPG------S----EW-SALMLTYGFPLAVIGM 132 (232)
Q Consensus 77 ~d~~f~l~kiSlGtlgl-~vG~iLtvvGf~AYf~~~p~------a----nL-Sl~gffYGiPIlLgGL 132 (232)
.|-+|--|.+--|.+|+ ++++++++++++.++.+... - +. +.-|+.-|=|+-+.|.
T Consensus 74 ~~~~~~rrsvrEg~VGlfvL~gi~ll~~~~~~L~g~~~~~~~~~Y~~~a~F~~a~GL~~Gs~Vr~~GV 141 (370)
T PLN03094 74 SDFGFGKRSVWEGGVGLFLLSGAALLALTLAWLRGFQLRSKFRKYQAVFEFPQACGICVGTPVRIRGV 141 (370)
T ss_pred hhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEecCCCCCCCCCCceEEcCE
Confidence 45566666666666666 34444444455555433210 0 11 3456666666666665
No 10
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=38.29 E-value=34 Score=31.31 Aligned_cols=38 Identities=32% Similarity=0.333 Sum_probs=29.0
Q ss_pred chhhhhhhHHHHHhhhhhhhccCCCCcchhhhhhhhhhHH-----HHHhhh
Q 026814 89 GVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLA-----VIGMAL 134 (232)
Q Consensus 89 Gtlgl~vG~iLtvvGf~AYf~~~p~anLSl~gffYGiPIl-----LgGLAL 134 (232)
-+-++.+|.+-++-|..|||+.|+. .||+.-+ .||+|+
T Consensus 99 DssLl~lg~~aLlsgitaff~~nA~--------~~GlItlll~a~vgGfam 141 (226)
T COG4858 99 DSSLLFLGAMALLSGITAFFQKNAQ--------VYGLITLLLTAVVGGFAM 141 (226)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCc--------chhHHHHHHHHHhhhHHH
Confidence 3446889999999999999998773 5666544 467776
No 11
>TIGR01168 YSIRK_signal Gram-positive signal peptide, YSIRK family. Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. There is a strong correlation between proteins carrying this region at the N-terminus and those carrying the Gram-positive anchor domain with the LPXTG sortase processing site at the C-terminus.
Probab=38.10 E-value=25 Score=23.89 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=19.9
Q ss_pred CCceecccccchhhhhhhHHHHHhh
Q 026814 79 DEFTLAKVSFGVIGLGLGISLLSYG 103 (232)
Q Consensus 79 ~~f~l~kiSlGtlgl~vG~iLtvvG 103 (232)
..|.+||+|.|..-..+|.+++..+
T Consensus 9 ~~fsiRK~svG~aSv~ig~~~~~~~ 33 (39)
T TIGR01168 9 QRYSIRKLSVGVASVLVASLFFGGG 33 (39)
T ss_pred heeeeeeechhHhHHHHHHHHHhhh
Confidence 5799999999988888888555444
No 12
>PF12389 Peptidase_M73: Camelysin metallo-endopeptidase; InterPro: IPR022121 Camelysin is a novel surface metallopeptidase from Bacillus cereus []. Camelysin prefers cleavage sites in front of aliphatic and hydrophilic amino acid residues (-OH, -SO3H, amido group), and requires zinc for activity [, ].
Probab=36.89 E-value=10 Score=33.85 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=24.2
Q ss_pred ecccccchhhhhhhHHHHHhhhhhhhccCCCCc
Q 026814 83 LAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSE 115 (232)
Q Consensus 83 l~kiSlGtlgl~vG~iLtvvGf~AYf~~~p~an 115 (232)
.+|+.+|-....+|+.|...|-.|||++..++|
T Consensus 6 kkklg~gia~aalg~~liggGT~AyFSD~ets~ 38 (199)
T PF12389_consen 6 KKKLGMGIASAALGAALIGGGTFAYFSDTETSN 38 (199)
T ss_pred HHHHHHHHHHHHHHHHHhccccEEEEecccccC
Confidence 355666666777788887778999999866543
No 13
>PRK01637 hypothetical protein; Reviewed
Probab=36.22 E-value=32 Score=30.46 Aligned_cols=39 Identities=26% Similarity=0.501 Sum_probs=33.1
Q ss_pred eecCCCceecccccchhhhhhhHHHHHhhhhhhhccCCC
Q 026814 75 LVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPG 113 (232)
Q Consensus 75 ~v~d~~f~l~kiSlGtlgl~vG~iLtvvGf~AYf~~~p~ 113 (232)
++|+..-..+.+-+|.+.+.++-.+..++|.-|.+..++
T Consensus 193 ~~P~~k~~~r~~~~Ga~~a~~~w~~~~~~f~~Yv~~~~~ 231 (286)
T PRK01637 193 VVPNKKVPFRHALVGALVAALLFELGKKGFALYITTFPS 231 (286)
T ss_pred hcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456666778888999999999999999999999987543
No 14
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.91 E-value=49 Score=27.16 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=8.1
Q ss_pred hhhhhHHHHHhhhhh
Q 026814 92 GLGLGISLLSYGFGA 106 (232)
Q Consensus 92 gl~vG~iLtvvGf~A 106 (232)
..++|.+|.+.|.++
T Consensus 11 ~iilgilli~~gI~~ 25 (191)
T PF04156_consen 11 LIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555555
No 15
>PF00361 Oxidored_q1: NADH-Ubiquinone/plastoquinone (complex I), various chains; InterPro: IPR001750 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This domain is found in the NADH:ubiquinone oxidoreductase (complex I) and NADH-plastoquinone oxidoreductase [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport, 0055114 oxidation-reduction process; PDB: 3RKO_D.
Probab=28.94 E-value=75 Score=27.21 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=28.7
Q ss_pred hhhhhHHHHHhhhhhhhccCCCCcch--------hhhhhhhhhHHHHHhhhhccc
Q 026814 92 GLGLGISLLSYGFGAYFSIFPGSEWS--------ALMLTYGFPLAVIGMALKYAE 138 (232)
Q Consensus 92 gl~vG~iLtvvGf~AYf~~~p~anLS--------l~gffYGiPIlLgGLALK~AE 138 (232)
...+|.+++..|+.-+.....+.|.+ ..+..+++-+++.|+.+|.+-
T Consensus 41 ~~~~~s~~ll~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~iKlg~ 95 (270)
T PF00361_consen 41 IQSLGSVLLLLGIILLYAFTGSLNFSDLFLSPFSNSTSPLGLILILLGFLIKLGL 95 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS--CCCHHHH-TT-TCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhhhhcccCCccccccccccccccccccccccccccccccccc
Confidence 34567777777766555432222222 233467999999999999764
No 16
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=28.39 E-value=85 Score=27.47 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=31.0
Q ss_pred hhhhHHHHHhhhhhhhccCCCC--cchhhhhhhhhhHHHHHhh
Q 026814 93 LGLGISLLSYGFGAYFSIFPGS--EWSALMLTYGFPLAVIGMA 133 (232)
Q Consensus 93 l~vG~iLtvvGf~AYf~~~p~a--nLSl~gffYGiPIlLgGLA 133 (232)
+.+.+.++..++++.|-+.+|+ -||++|.+-|.-+...++.
T Consensus 26 lai~sl~~s~llI~lFg~~~~~nf~~NllGVil~~~~~~~~l~ 68 (165)
T PF11286_consen 26 LAILSLAFSQLLIALFGGESGGNFHWNLLGVILGLLLTSALLR 68 (165)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCceeeeHHHHHHHHHHHHHHHH
Confidence 4566666677778888876665 4899999999887777766
No 17
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=27.29 E-value=31 Score=31.96 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=41.8
Q ss_pred hhccccCCCCCCCchHHHHHHhhcCchHHHHhhhcccceecchhhhHHHHHHHH
Q 026814 134 LKYAELKPVPCLTYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRI 187 (232)
Q Consensus 134 LK~AELkPvp~~T~~~~~alRe~qAT~~q~Qvr~DVTRyRYGqeaHLd~ALerL 187 (232)
||..-+|+=++.|-.++|..-.==++|+|.|. ||-||.||.||.+|..+
T Consensus 73 L~~~GlPr~~f~~l~d~Fp~dgLVsSP~eEka-----R~~~~~eQ~le~tLs~m 121 (246)
T COG4669 73 LNQNGLPRKKFTTLGDIFPKDGLVSSPTEEKA-----RLNYAKEQQLEQTLSKM 121 (246)
T ss_pred HHhcCCCCCCCCcHHHhCCcccccCCcHHHHH-----HHHHHHHHHHHHHHHhc
Confidence 67778888888888888877666778888886 69999999999999998
No 18
>PRK02542 photosystem I assembly protein Ycf4; Provisional
Probab=27.26 E-value=86 Score=28.07 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=40.5
Q ss_pred eeecCCCceecccc---cchhhhhhhHHHHHhhhhhhhccC--C---CCcc-----hhhhhhhhhhHHHHHhhhh
Q 026814 74 TLVPDDEFTLAKVS---FGVIGLGLGISLLSYGFGAYFSIF--P---GSEW-----SALMLTYGFPLAVIGMALK 135 (232)
Q Consensus 74 ~~v~d~~f~l~kiS---lGtlgl~vG~iLtvvGf~AYf~~~--p---~anL-----Sl~gffYGiPIlLgGLALK 135 (232)
.+..+.----|++| .+.+++.-|...+.+|+-.|+..+ | ..++ -++|.|||+-=++..+=|=
T Consensus 11 ~i~~~~I~GSRR~SNy~wA~i~~~G~~GFll~g~sSYl~~~Llpf~~~~~i~FiPQGivM~FYGi~gl~ls~Ylw 85 (188)
T PRK02542 11 LVLEQEVLGSRRLSNYLWASMVTIGGIGFLLAGLSSYLGRNLLPVGDPSTLIFIPQGLAMGFYGVAGTLLALYLW 85 (188)
T ss_pred heEEEecccccchhHHHHHHHHHhhhHHHHHhhhHHhhCcCccccCChhhCeEeCccHHHHHHHHHHHHHHHHHH
Confidence 33333333445666 677777777889999999998632 2 1111 3679999998777776553
No 19
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=26.88 E-value=99 Score=23.63 Aligned_cols=12 Identities=8% Similarity=0.426 Sum_probs=7.9
Q ss_pred chHHHHhhhccc
Q 026814 159 TPILKQVRNDVI 170 (232)
Q Consensus 159 T~~q~Qvr~DVT 170 (232)
..+++++++|+.
T Consensus 105 ~~t~~~l~~d~~ 116 (121)
T PF07332_consen 105 EETIAELKEDIA 116 (121)
T ss_pred HHHHHHHHHHHH
Confidence 346677777764
No 20
>PF14116 YyzF: YyzF-like protein
Probab=26.10 E-value=30 Score=24.59 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHhcCCCCCCCC-CCCcchhhheeee
Q 026814 177 EQHLDEALKRIFQYGLGGGIPR-RSAPVLQMIREEV 211 (232)
Q Consensus 177 eaHLd~ALerLf~~gL~~gi~d-~~~PqL~~IrE~~ 211 (232)
+.|+|.|++.. +++ +.+|.+..|.+..
T Consensus 3 ~EHie~AiD~~--------Vde~e~aP~i~~l~~~~ 30 (48)
T PF14116_consen 3 EEHIELAIDDF--------VDEYEQAPDIEKLEEVE 30 (48)
T ss_pred HHHHHHHHHHH--------HHhhccCCCeEeccccC
Confidence 57999999987 233 8899999998876
No 21
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=26.10 E-value=71 Score=22.69 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=20.5
Q ss_pred hHHHHHhhhhhhhccCCCC-cchhhhhhhhhhHHHHH
Q 026814 96 GISLLSYGFGAYFSIFPGS-EWSALMLTYGFPLAVIG 131 (232)
Q Consensus 96 G~iLtvvGf~AYf~~~p~a-nLSl~gffYGiPIlLgG 131 (232)
+..|.++|+++.++.+++. .-+++.+.-|+-|.+.|
T Consensus 3 ap~Li~iglv~l~~r~~~~~i~~lP~~~~Gi~Lii~g 39 (49)
T PF11384_consen 3 APFLILIGLVALFSRNGSDRIQALPAILIGIGLIISG 39 (49)
T ss_pred hhHHHHHHHHHHHhcCCccchhccHHHHHhHHHHhhh
Confidence 4556777888887766652 33444444444444444
No 22
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=25.87 E-value=45 Score=27.97 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=17.8
Q ss_pred cccccchhhhhhhHHHHHhhhhhhhc
Q 026814 84 AKVSFGVIGLGLGISLLSYGFGAYFS 109 (232)
Q Consensus 84 ~kiSlGtlgl~vG~iLtvvGf~AYf~ 109 (232)
..+++ +|++.+|++|++++++-|..
T Consensus 115 ~~~~~-~i~~~i~g~ll~i~~giy~~ 139 (145)
T PF10661_consen 115 KPISP-TILLSIGGILLAICGGIYVV 139 (145)
T ss_pred cchhH-HHHHHHHHHHHHHHHHHHHH
Confidence 33444 78888888888888887753
No 23
>PRK10692 hypothetical protein; Provisional
Probab=25.24 E-value=76 Score=25.70 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=26.8
Q ss_pred cchhhhhhhHHHHHhhhhhh--hccCCCCcchhhhhhhhhh
Q 026814 88 FGVIGLGLGISLLSYGFGAY--FSIFPGSEWSALMLTYGFP 126 (232)
Q Consensus 88 lGtlgl~vG~iLtvvGf~AY--f~~~p~anLSl~gffYGiP 126 (232)
+|++..++|.++.+.|+ +| ++..|. |+++.|++..-
T Consensus 9 ~GN~lMglGmv~Mv~gi-gysi~~~i~~--L~Lp~~~~~ga 46 (92)
T PRK10692 9 LGNVLMGLGLVVMVVGV-GYSILNQLPQ--LNLPQFFAHGA 46 (92)
T ss_pred HhhHHHHHHHHHHHHHH-HHHHHHhccc--CCchHHHHhhH
Confidence 79999999999887765 45 445554 88888877644
No 24
>PF06911 Senescence: Senescence-associated protein; InterPro: IPR009686 This domain is found in a number of plant senescence-associated proteins of approximately 450 residues in length. In Hemerocallis, petals have a genetically based program that leads to senescence and cell death approximately 24 hours after the, flower opens, and it is believed that senescence proteins produced around that time have a role in this program []. This domain is also found in a number of Spartin proteins which may be implicated in endosomal trafficking, or microtubule dynamics, or both [].
Probab=23.11 E-value=25 Score=29.00 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=13.1
Q ss_pred HHhhhcccceecchhhh
Q 026814 163 KQVRNDVIRFRYGDEQH 179 (232)
Q Consensus 163 ~Qvr~DVTRyRYGqeaH 179 (232)
..---||.++|||++|.
T Consensus 134 ~~~t~~vV~hkYG~~Ag 150 (179)
T PF06911_consen 134 SDATVDVVEHKYGEEAG 150 (179)
T ss_pred HHHHHHHHHhhcChHHH
Confidence 34446899999999985
No 25
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=23.01 E-value=71 Score=25.74 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=25.2
Q ss_pred cchhhhhhhHHHHHhhhhhh--hccCCCCcchhhhhhhhhh
Q 026814 88 FGVIGLGLGISLLSYGFGAY--FSIFPGSEWSALMLTYGFP 126 (232)
Q Consensus 88 lGtlgl~vG~iLtvvGf~AY--f~~~p~anLSl~gffYGiP 126 (232)
+|++..++|.++.+.| ++| ++..| +|+++-|+...-
T Consensus 9 ~GN~lMglGmv~Mv~g-igysi~~~~~--~L~Lp~~~~~ga 46 (89)
T PF10762_consen 9 LGNVLMGLGMVVMVGG-IGYSILSQIP--QLGLPQFLAHGA 46 (89)
T ss_pred HhhHHHHHhHHHHHHh-HHHHHHHhcc--cCCCcHHHHhhH
Confidence 7899999999887765 556 44444 477777766543
No 26
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=22.91 E-value=89 Score=25.40 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=17.2
Q ss_pred hhhhhhhhhhHHHHHhhhhcc
Q 026814 117 SALMLTYGFPLAVIGMALKYA 137 (232)
Q Consensus 117 Sl~gffYGiPIlLgGLALK~A 137 (232)
=.+.-|.|+=++++++|++.+
T Consensus 36 W~Vl~F~glev~~l~~a~~~~ 56 (140)
T PF10003_consen 36 WPVLPFAGLEVLALWYAFRRN 56 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345567999999999999865
No 27
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=22.36 E-value=68 Score=31.80 Aligned_cols=11 Identities=45% Similarity=0.498 Sum_probs=10.3
Q ss_pred hhhccccCCCC
Q 026814 133 ALKYAELKPVP 143 (232)
Q Consensus 133 ALK~AELkPvp 143 (232)
|.|+|.|+||.
T Consensus 633 A~rAa~l~Pie 643 (648)
T PRK10535 633 ARNAARLDPVD 643 (648)
T ss_pred HHHHhCCCHHH
Confidence 79999999998
No 28
>PF07613 DUF1576: Protein of unknown function (DUF1576); InterPro: IPR011470 This small family is found in several undescribed proteins. The alignment is distinguished by the frequent occurrence of conserved glycine and aromatic residues.
Probab=22.05 E-value=87 Score=27.63 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=22.8
Q ss_pred hhhhhHHHHHhhhhhhhccCCCCcchhhhhhhhhhHHHHHhh
Q 026814 92 GLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMA 133 (232)
Q Consensus 92 gl~vG~iLtvvGf~AYf~~~p~anLSl~gffYGiPIlLgGLA 133 (232)
|.++|+++|++||.++-.+. +| -+||++|..-
T Consensus 63 Gp~iaaiftv~GFs~FGKn~----~N------i~PI~lGv~L 94 (183)
T PF07613_consen 63 GPTIAAIFTVVGFSAFGKNI----KN------IWPIILGVYL 94 (183)
T ss_pred cHHHHHHHHHHHHHHcCCcH----HH------HhHHHHHHHH
Confidence 34789999999999996542 22 3677777654
No 29
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=21.89 E-value=60 Score=30.84 Aligned_cols=43 Identities=19% Similarity=0.438 Sum_probs=31.7
Q ss_pred CchHHHHHHhhcCchHHHHhhh---cccceecchhhhHHHHHHHHH
Q 026814 146 TYSDAQSLRETCATPILKQVRN---DVIRFRYGDEQHLDEALKRIF 188 (232)
Q Consensus 146 T~~~~~alRe~qAT~~q~Qvr~---DVTRyRYGqeaHLd~ALerLf 188 (232)
|.++.-+.|....-.-+.++++ =+.=|+||.+.|...||+.++
T Consensus 135 td~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~ 180 (297)
T PF05152_consen 135 TDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELK 180 (297)
T ss_pred ccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhC
Confidence 5555556677665555555554 357799999999999999993
No 30
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=21.84 E-value=59 Score=23.92 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=15.9
Q ss_pred hhhhhhhHHHHHhhhhhhhc
Q 026814 90 VIGLGLGISLLSYGFGAYFS 109 (232)
Q Consensus 90 tlgl~vG~iLtvvGf~AYf~ 109 (232)
.+.-.+|....++||++|+-
T Consensus 34 ~ia~~~~iG~~i~G~iGf~I 53 (61)
T PRK09400 34 LVAKVTGLGILLIGLIGFII 53 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667788888999999974
No 31
>CHL00036 ycf4 photosystem I assembly protein Ycf4
Probab=21.73 E-value=98 Score=27.62 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=34.3
Q ss_pred cchhhhhhhHHHHHhhhhhhhccC--C---CCcc-----hhhhhhhhhhHHHHHhhhh
Q 026814 88 FGVIGLGLGISLLSYGFGAYFSIF--P---GSEW-----SALMLTYGFPLAVIGMALK 135 (232)
Q Consensus 88 lGtlgl~vG~iLtvvGf~AYf~~~--p---~anL-----Sl~gffYGiPIlLgGLALK 135 (232)
.+.+++.-|...+.+|+-.|+..+ | ..++ -++|.|||+-=++..+=|=
T Consensus 24 wA~i~~~G~~GFll~g~SSYl~~~Llpf~~~~~i~FiPQGivM~FYGi~gl~ls~Ylw 81 (184)
T CHL00036 24 WAFILFLGSLGFLLVGISSYLGKNLIPFLPSQQILFFPQGIVMCFYGIAGLFISSYLW 81 (184)
T ss_pred HHHHHHhhhHHHHHhhhHHhhCcCccccCChhhCeEeCccHHHHHHHHHHHHHHHHHH
Confidence 567777777888999999998732 2 1112 3689999998777776553
No 32
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=21.69 E-value=73 Score=21.62 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=14.4
Q ss_pred CCCCcchhhhhhhhhhHHH
Q 026814 111 FPGSEWSALMLTYGFPLAV 129 (232)
Q Consensus 111 ~p~anLSl~gffYGiPIlL 129 (232)
||-++=+-+++.|+||+.-
T Consensus 1 NPQTs~gtp~y~y~Ip~v~ 19 (33)
T TIGR03068 1 NPQTNAGTPAYIYAIPVAS 19 (33)
T ss_pred CCCCCCCCcchhhHHHHHH
Confidence 4545567789999999865
No 33
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=21.65 E-value=59 Score=28.41 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.6
Q ss_pred cccccchhhhhhhHHHHHhhhh
Q 026814 84 AKVSFGVIGLGLGISLLSYGFG 105 (232)
Q Consensus 84 ~kiSlGtlgl~vG~iLtvvGf~ 105 (232)
+..|+|.+.+.+-++++++.|+
T Consensus 73 sR~~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 73 SRRNIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred cccchHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998
No 34
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=21.46 E-value=1.3e+02 Score=21.14 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=22.8
Q ss_pred hhhhHHHHHhhhhhhhccCCCCcchhhhhhhhhhHHHHHh
Q 026814 93 LGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGM 132 (232)
Q Consensus 93 l~vG~iLtvvGf~AYf~~~p~anLSl~gffYGiPIlLgGL 132 (232)
.++|.++++.|+..+... +..+..+.|+-++.-|+
T Consensus 14 ~~~G~~l~~~~~~~~~~~-----~~~~~~~~g~~ll~~g~ 48 (66)
T PF11127_consen 14 IIIGIVLLALGLLGLFGS-----WGWLLGFVGAMLLVTGI 48 (66)
T ss_pred HHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHH
Confidence 356777777766655333 26777777877776665
No 35
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose. It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.
Probab=21.23 E-value=68 Score=27.96 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=15.3
Q ss_pred eecCceeEEEeeCcccCC
Q 026814 211 VCLSNFRFKHECFGCLSS 228 (232)
Q Consensus 211 ~~eg~Y~Lvle~~~~~~~ 228 (232)
+.++.+++.+||.+|++-
T Consensus 108 vn~t~~t~~~rC~nC~~W 125 (184)
T cd00241 108 VNSTHWKLVFRCQNCTSW 125 (184)
T ss_pred EeCCEEEEEEEeCCCccc
Confidence 556788999999999974
No 36
>PRK09546 zntB zinc transporter; Reviewed
Probab=21.08 E-value=1.1e+02 Score=27.39 Aligned_cols=12 Identities=17% Similarity=0.631 Sum_probs=8.8
Q ss_pred hhhhHHHHHhhh
Q 026814 123 YGFPLAVIGMAL 134 (232)
Q Consensus 123 YGiPIlLgGLAL 134 (232)
||+|+.++.+++
T Consensus 298 ~gy~~~l~im~~ 309 (324)
T PRK09546 298 FGFSIFCLLLVV 309 (324)
T ss_pred chHHHHHHHHHH
Confidence 788887777654
No 37
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=20.98 E-value=94 Score=29.23 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=38.3
Q ss_pred eecCCCceecccccchhhhhhhHHHHHhhhhhhhccCCCCcch-hhhhhhhhhHHH
Q 026814 75 LVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWS-ALMLTYGFPLAV 129 (232)
Q Consensus 75 ~v~d~~f~l~kiSlGtlgl~vG~iLtvvGf~AYf~~~p~anLS-l~gffYGiPIlL 129 (232)
++|+.....+..-+|.++.+++-.+.-++|+-|.+..++ .| .-|-|=++|+++
T Consensus 200 ~~Pn~~v~~r~al~Gai~a~vl~~~~~~~f~~yv~~~~~--y~~iYGs~a~v~i~L 253 (412)
T PRK04214 200 VVPNHFVPLRHALPGALLTAVLLELVKWGFGFYLGNFQT--YQRIYGAFAAVPILL 253 (412)
T ss_pred HcCCCccchHHhHHHHHHHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHH
Confidence 456666667778899999999999999999999987654 33 344444466544
Done!