Query 026814
Match_columns 232
No_of_seqs 71 out of 73
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 22:51:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jp3_A FXYD domain-containing 40.2 12 0.00041 27.6 1.6 35 75-109 4-38 (67)
2 2zxe_G FXYD10, phospholemman-l 33.6 14 0.00049 27.6 1.1 35 76-110 7-41 (74)
3 2jo1_A Phospholemman; FXYD1, N 28.9 13 0.00044 27.8 0.2 33 77-109 5-37 (72)
4 2ww9_B Protein transport prote 23.3 32 0.0011 25.7 1.5 22 88-109 47-68 (80)
5 3ugu_A S-arrestin; arrestin fo 21.8 34 0.0012 31.8 1.7 50 169-228 72-139 (380)
6 3bbz_A P protein, phosphoprote 21.0 39 0.0013 23.5 1.4 29 144-172 14-47 (49)
7 1rh5_B Preprotein translocase 20.9 39 0.0013 24.8 1.5 21 90-110 36-56 (74)
8 1qbf_A Peptide YY, PYY; PP-fol 20.3 27 0.00092 23.1 0.5 15 161-175 23-37 (37)
9 2wwb_B SEC61gamma, protein tra 17.9 40 0.0014 24.4 1.0 19 90-108 35-53 (68)
10 1f8p_A Neuropeptide Y (PNPY); 17.6 26 0.0009 23.2 -0.1 15 161-175 23-37 (37)
No 1
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=40.22 E-value=12 Score=27.56 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=29.7
Q ss_pred eecCCCceecccccchhhhhhhHHHHHhhhhhhhc
Q 026814 75 LVPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFS 109 (232)
Q Consensus 75 ~v~d~~f~l~kiSlGtlgl~vG~iLtvvGf~AYf~ 109 (232)
.-+|++|.-+.=|+-.-||+++++|.++|...-++
T Consensus 4 ~~e~dpF~YDY~tLRigGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 4 VDKGSPFYYDWESLQLGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp TSTTSGGGGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCcccchHHheecchhhHHHHHHHHHHHHHc
Confidence 34689999999999999999999999998876554
No 2
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=33.56 E-value=14 Score=27.64 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=29.8
Q ss_pred ecCCCceecccccchhhhhhhHHHHHhhhhhhhcc
Q 026814 76 VPDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSI 110 (232)
Q Consensus 76 v~d~~f~l~kiSlGtlgl~vG~iLtvvGf~AYf~~ 110 (232)
-+|++|.-+.=|+-.-||+.+++|.++|..--++.
T Consensus 7 ~~~dpF~YDY~tLRigGLifA~vLfi~GI~iilS~ 41 (74)
T 2zxe_G 7 DNDERFTYDYYRLRVVGLIVAAVLCVIGIIILLAG 41 (74)
T ss_dssp TCGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCcccchHHheeccchhHHHHHHHHHHHHHcC
Confidence 57889999999999999999999999988766543
No 3
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=28.86 E-value=13 Score=27.80 Aligned_cols=33 Identities=27% Similarity=0.259 Sum_probs=26.8
Q ss_pred cCCCceecccccchhhhhhhHHHHHhhhhhhhc
Q 026814 77 PDDEFTLAKVSFGVIGLGLGISLLSYGFGAYFS 109 (232)
Q Consensus 77 ~d~~f~l~kiSlGtlgl~vG~iLtvvGf~AYf~ 109 (232)
+|++|.-+.=++-.-||+++++|.++|.+.-++
T Consensus 5 E~dPF~YDY~tLRiGGLifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 5 EHDPFTYDYQSLQIGGLVIAGILFILGILIVLS 37 (72)
T ss_dssp HHSGGGCSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccchHHhhccchHHHHHHHHHHHHHHHc
Confidence 578888888889899999999998888765443
No 4
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=23.33 E-value=32 Score=25.73 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=17.4
Q ss_pred cchhhhhhhHHHHHhhhhhhhc
Q 026814 88 FGVIGLGLGISLLSYGFGAYFS 109 (232)
Q Consensus 88 lGtlgl~vG~iLtvvGf~AYf~ 109 (232)
+-.+.-.+|..+.++||++|+-
T Consensus 47 f~~iak~t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 47 YTKIVKAVGIGFIAVGIIGYAI 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888889999999974
No 5
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=21.84 E-value=34 Score=31.84 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=28.8
Q ss_pred ccceecchhhhHHHHHHHHHhcCCC-------------CCCCCCCCcchhhheeee----ecCceeEEEeeC-cccCC
Q 026814 169 VIRFRYGDEQHLDEALKRIFQYGLG-------------GGIPRRSAPVLQMIREEV----CLSNFRFKHECF-GCLSS 228 (232)
Q Consensus 169 VTRyRYGqeaHLd~ALerLf~~gL~-------------~gi~d~~~PqL~~IrE~~----~eg~Y~Lvle~~-~~~~~ 228 (232)
...||||+|. ++.+ ||. | +.++.+.|..+.|.. .+.+|-+.|++| +|.+|
T Consensus 72 ~~~fRYGred-----~dV~---Gl~F~kdl~~~~~qvyP--~~~~~~~lT~lQe~L~kKlG~nayPF~f~LP~~lPsS 139 (380)
T 3ugu_A 72 TCAFRYGQED-----IDVM---GLSFRRDLYFSQVQVFP--PVGASGATTRLQESLIKKLGANTYPFLLTFPDYLPCS 139 (380)
T ss_dssp EEEEEECC--------------CCCEEEEEEEEEEEEES--CCSCCCCCCHHHHHHHHHHCTTEEEEEECCCSSCCCS
T ss_pred EEEEecCCCc-----cccc---cchhhhhhhheeEEecC--CCCCCCCCCHHHHHHHHHhCcCceeEEEeCCCCCCCE
Confidence 3579999876 6677 764 3 234455666666654 556888888887 55554
No 6
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=20.98 E-value=39 Score=23.53 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=19.3
Q ss_pred CCCchHHHHHHh---hcCchHH--HHhhhcccce
Q 026814 144 CLTYSDAQSLRE---TCATPIL--KQVRNDVIRF 172 (232)
Q Consensus 144 ~~T~~~~~alRe---~qAT~~q--~Qvr~DVTRy 172 (232)
|.+.++.-+..+ .++|-++ ++|++||.|+
T Consensus 14 Ci~np~~r~~Fe~ki~~~~tE~q~k~iKr~IIRs 47 (49)
T 3bbz_A 14 SVANPQMKQAFEQRLAKASTEDALNDIKRDIIRS 47 (49)
T ss_dssp HCCSHHHHHHHHHHHHTCCSHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 666665554444 4555544 9999999986
No 7
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=20.88 E-value=39 Score=24.78 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=16.0
Q ss_pred hhhhhhhHHHHHhhhhhhhcc
Q 026814 90 VIGLGLGISLLSYGFGAYFSI 110 (232)
Q Consensus 90 tlgl~vG~iLtvvGf~AYf~~ 110 (232)
.+.-.+|..+.++||++|+--
T Consensus 36 ~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 36 AVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677888889999999643
No 8
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=20.27 E-value=27 Score=23.12 Aligned_cols=15 Identities=40% Similarity=0.428 Sum_probs=11.6
Q ss_pred HHHHhhhcccceecc
Q 026814 161 ILKQVRNDVIRFRYG 175 (232)
Q Consensus 161 ~q~Qvr~DVTRyRYG 175 (232)
.+++-.|=|||-|||
T Consensus 23 ~Lr~YinlvTR~RyG 37 (37)
T 1qbf_A 23 SLRHYLNLVTRQRYX 37 (37)
T ss_dssp GGGHHHHHTSSSCC-
T ss_pred HHHHHHHHhcccccC
Confidence 467778889999998
No 9
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=17.94 E-value=40 Score=24.38 Aligned_cols=19 Identities=26% Similarity=0.530 Sum_probs=15.2
Q ss_pred hhhhhhhHHHHHhhhhhhh
Q 026814 90 VIGLGLGISLLSYGFGAYF 108 (232)
Q Consensus 90 tlgl~vG~iLtvvGf~AYf 108 (232)
.+.-.+|..+.++||++|+
T Consensus 35 ~iak~~~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 35 KIAMATAIGFAIMGFIGFF 53 (68)
T ss_dssp HHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777888899999997
No 10
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=17.55 E-value=26 Score=23.16 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=11.5
Q ss_pred HHHHhhhcccceecc
Q 026814 161 ILKQVRNDVIRFRYG 175 (232)
Q Consensus 161 ~q~Qvr~DVTRyRYG 175 (232)
.+++-.|=|||-|||
T Consensus 23 ~Lr~YinlvTRqRyG 37 (37)
T 1f8p_A 23 ALRHYINLITRQRYX 37 (37)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcccccC
Confidence 366778889999998
Done!