Query 026814
Match_columns 232
No_of_seqs 71 out of 73
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 22:51:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026814.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026814hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0f_ f.23.16.1 (F:) Subunit 29.7 2.9 0.00021 32.6 -1.5 33 143-176 7-40 (141)
2 d2dy1a4 d.58.11.1 (A:378-454) 20.5 25 0.0018 23.1 2.1 17 177-193 53-69 (77)
3 d1vpka1 d.131.1.1 (A:1-120) DN 19.8 65 0.0047 22.1 4.4 38 177-218 7-44 (120)
4 d1ijda_ f.3.1.1 (A:) Light-har 18.2 22 0.0016 23.0 1.3 14 122-135 13-26 (46)
5 d1m56c_ f.25.1.1 (C:) Bacteria 17.9 64 0.0046 25.3 4.4 52 78-134 5-56 (265)
6 d1v54c_ f.25.1.1 (C:) Mitochon 16.5 50 0.0037 26.1 3.5 51 80-135 5-55 (259)
7 d1nkza_ f.3.1.1 (A:) Light-har 15.4 28 0.002 23.0 1.3 13 122-134 13-25 (53)
8 d1rh5b_ f.23.28.1 (B:) Preprot 14.0 35 0.0025 22.5 1.5 20 90-109 25-44 (56)
9 d1xoub_ a.231.1.2 (B:) EspA ch 12.6 45 0.0033 23.4 1.9 29 156-187 48-77 (84)
10 d1pl3a_ b.1.9.1 (A:) Cytochrom 11.6 50 0.0036 24.9 2.0 26 203-228 101-127 (186)
No 1
>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
Probab=29.72 E-value=2.9 Score=32.61 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHhhcCchHHHHhhhcccce-ecch
Q 026814 143 PCLTYSDAQSLRETCATPILKQVRNDVIRF-RYGD 176 (232)
Q Consensus 143 p~~T~~~~~alRe~qAT~~q~Qvr~DVTRy-RYGq 176 (232)
||..++ +|+.|.+.|..+|.+.-+.-.|| ||||
T Consensus 7 pC~es~-~F~~R~~~a~~~~~~~~~~k~RFe~Y~~ 40 (141)
T d1jb0f_ 7 PCKDSP-AFQKRAAAAVNTTADPASGQKRFERYSQ 40 (141)
T ss_dssp EGGGCH-HHHHHHHTCCCCSSSTTHHHHHHHHHTT
T ss_pred cCccCH-HHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 566444 78899888877666655555555 6766
No 2
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=20.51 E-value=25 Score=23.13 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHhcCCC
Q 026814 177 EQHLDEALKRIFQYGLG 193 (232)
Q Consensus 177 eaHLd~ALerLf~~gL~ 193 (232)
|-|||-.++||+.||+.
T Consensus 53 elHLei~~~rL~~~~v~ 69 (77)
T d2dy1a4 53 ELHLATAKERLQDYGVE 69 (77)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHcCCc
Confidence 67999999999888753
No 3
>d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=19.77 E-value=65 Score=22.06 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHhcCCCCCCCCCCCcchhhheeeeecCceeE
Q 026814 177 EQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVCLSNFRF 218 (232)
Q Consensus 177 eaHLd~ALerLf~~gL~~gi~d~~~PqL~~IrE~~~eg~Y~L 218 (232)
+.+|.+||+....- .+ .+...|.|.+|.=++.+|...|
T Consensus 7 ~~~L~~al~~v~~~-i~---~~~~~piL~~ili~~~~~~l~l 44 (120)
T d1vpka1 7 TLELKDKITIASKA-LA---KKSVKPILAGFLFEVKDGNFYI 44 (120)
T ss_dssp HHHHHHHHHHHGGG-CC---CSSSCGGGGEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHH-cc---CCCchhHhcCeEEEEECCEEEE
Confidence 56899999998332 23 5789999999998888887654
No 4
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=18.22 E-value=22 Score=23.00 Aligned_cols=14 Identities=29% Similarity=0.712 Sum_probs=11.2
Q ss_pred hhhhhHHHHHhhhh
Q 026814 122 TYGFPLAVIGMALK 135 (232)
Q Consensus 122 fYGiPIlLgGLALK 135 (232)
.-|+|++||..|.-
T Consensus 13 tvG~Pl~LgsVav~ 26 (46)
T d1ijda_ 13 AFGLPLMLGAVAIT 26 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CcCchhHHHHHHHH
Confidence 46999999988753
No 5
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=17.90 E-value=64 Score=25.31 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=39.1
Q ss_pred CCCceecccccchhhhhhhHHHHHhhhhhhhccCCCCcchhhhhhhhhhHHHHHhhh
Q 026814 78 DDEFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMAL 134 (232)
Q Consensus 78 d~~f~l~kiSlGtlgl~vG~iLtvvGf~AYf~~~p~anLSl~gffYGiPIlLgGLAL 134 (232)
..+|-+-.-|+-=+...+|+.++.+|++-|++.+. ...++-|+.+++..+..
T Consensus 5 ~hpyh~~~~SpWPi~~s~~l~~~~~g~~~~~~~~~-----~~~~~~g~~~~l~~l~~ 56 (265)
T d1m56c_ 5 NHDYHILPPSIWPFMASVGAFVMLFGAVLWMHGSG-----PWMGLIGLVVVLYTMFG 56 (265)
T ss_dssp CCCSCCCCCCSHHHHHHHHHHHHHHHHHHHHTTSC-----THHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHccc-----HHHHHHHHHHHHHHHHH
Confidence 34566667889999999999999999999987632 34455677777777654
No 6
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.52 E-value=50 Score=26.09 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=38.8
Q ss_pred CceecccccchhhhhhhHHHHHhhhhhhhccCCCCcchhhhhhhhhhHHHHHhhhh
Q 026814 80 EFTLAKVSFGVIGLGLGISLLSYGFGAYFSIFPGSEWSALMLTYGFPLAVIGMALK 135 (232)
Q Consensus 80 ~f~l~kiSlGtlgl~vG~iLtvvGf~AYf~~~p~anLSl~gffYGiPIlLgGLALK 135 (232)
+|-+-.-|+.=+.+.+|+..+.+|++.|++.+. ...++-|+.+++.++.+=
T Consensus 5 pyh~v~~SpWP~~~s~~~~~~~~g~~~~~~~~~-----~~~~~~gl~~~~~~~~~W 55 (259)
T d1v54c_ 5 AYHMVNPSPWPLTGALSALLMTSGLTMWFHFNS-----MTLLMIGLTTNMLTMYQW 55 (259)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHSC-----CHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCChhHHHHHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHH
Confidence 455667799999999999999999999998632 334555777777776654
No 7
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=15.35 E-value=28 Score=23.03 Aligned_cols=13 Identities=15% Similarity=0.370 Sum_probs=10.8
Q ss_pred hhhhhHHHHHhhh
Q 026814 122 TYGFPLAVIGMAL 134 (232)
Q Consensus 122 fYGiPIlLgGLAL 134 (232)
.-|+|++||..|.
T Consensus 13 tVG~Pl~LgsVav 25 (53)
T d1nkza_ 13 AIGIPALLGSVTV 25 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CcCchhHHHHHHH
Confidence 4699999998875
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=14.01 E-value=35 Score=22.53 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=15.3
Q ss_pred hhhhhhhHHHHHhhhhhhhc
Q 026814 90 VIGLGLGISLLSYGFGAYFS 109 (232)
Q Consensus 90 tlgl~vG~iLtvvGf~AYf~ 109 (232)
.+..+.|..+.++||++|+-
T Consensus 25 ~ia~v~~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 25 AVAKVTALGISLLGIIGYII 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667788888899999864
No 9
>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli [TaxId: 562]}
Probab=12.65 E-value=45 Score=23.39 Aligned_cols=29 Identities=34% Similarity=0.637 Sum_probs=21.2
Q ss_pred hcCchHHHHhhhcccceecchhhhH-HHHHHHH
Q 026814 156 TCATPILKQVRNDVIRFRYGDEQHL-DEALKRI 187 (232)
Q Consensus 156 ~qAT~~q~Qvr~DVTRyRYGqeaHL-d~ALerL 187 (232)
-||.+.+|++ +--|.||.|..| |+||..|
T Consensus 48 pqaaeklnkl---iegyt~geerklydsalski 77 (84)
T d1xoub_ 48 PQAAEKLNKL---IEGYTYGEERKLYDSALSKI 77 (84)
T ss_dssp HHHHHHHHHH---HHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHhhcchHHHHHHHHHHHHH
Confidence 3566666666 457899999987 7778776
No 10
>d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Probab=11.62 E-value=50 Score=24.90 Aligned_cols=26 Identities=15% Similarity=0.506 Sum_probs=18.4
Q ss_pred chhhh-eeeeecCceeEEEeeCcccCC
Q 026814 203 VLQMI-REEVCLSNFRFKHECFGCLSS 228 (232)
Q Consensus 203 qL~~I-rE~~~eg~Y~Lvle~~~~~~~ 228 (232)
++.-| --.+.++.+.++++|.+|++-
T Consensus 101 ~~~~l~~s~vn~t~~~~~f~C~~C~~w 127 (186)
T d1pl3a_ 101 TLTTLPETTINSTHWKWVFRCQGCTEW 127 (186)
T ss_dssp EEEECTTCEECSSEEEEEEEEETCSBC
T ss_pred eEEEccCceEECCEEEEEEEEeccccc
Confidence 44444 234556788999999999864
Done!