BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026815
MRIPNPRRGSFSNTQQNPDNPFNVQNLSTVSILLNFLKRPQAFPFLLSIFVLLTWLSLRL
QHSSSQFELNKNNHEKWSSTKDDDVKANLVRFKSDHLPSLILKDRRGWLLNPISLAIDAG
VKGGAVSCVSLHVGEIQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIV
GADEVAIAASPQGTAHALVNADLIHSTFFIGCQDGVINNNASTSDFNVWKDL

High Scoring Gene Products

Symbol, full name Information P value
AT3G56820 protein from Arabidopsis thaliana 1.1e-64

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026815
        (232 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2103630 - symbol:AT3G56820 "AT3G56820" species...   659  1.1e-64   1


>TAIR|locus:2103630 [details] [associations]
            symbol:AT3G56820 "AT3G56820" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005794 "Golgi apparatus" evidence=IDA]
            [GO:0005768 "endosome" evidence=IDA] [GO:0005802 "trans-Golgi
            network" evidence=IDA] GO:GO:0005794 EMBL:CP002686 GO:GO:0005768
            GO:GO:0005802 EMBL:AF410339 EMBL:AY088653 EMBL:AY149924
            IPI:IPI00519470 RefSeq:NP_567041.1 UniGene:At.26519
            ProteinModelPortal:Q94EG4 SMR:Q94EG4 PaxDb:Q94EG4 PRIDE:Q94EG4
            EnsemblPlants:AT3G56820.1 GeneID:824849 KEGG:ath:AT3G56820
            TAIR:At3g56820 eggNOG:NOG329432 HOGENOM:HOG000077733
            InParanoid:Q94EG4 OMA:LTWISLR PhylomeDB:Q94EG4
            ProtClustDB:CLSN2689193 Genevestigator:Q94EG4 Uniprot:Q94EG4
        Length = 220

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 133/216 (61%), Positives = 162/216 (75%)

Query:    24 VQNLSTVSILLNFLKRPQAFPFLLSIFVLLTWLSLRLQHSSSQFELNKNNHEKWSSTK-- 81
             ++N   +S L+N LK+PQA P LLS+F+LLTW+SLRLQHSS     + ++H K +     
Sbjct:     9 IEN-QRLSPLINLLKKPQAIPLLLSLFLLLTWISLRLQHSSQSHVSSSSSHPKSTVNSHP 67

Query:    82 -----DDDVKANLVRFKSDHLPSLILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHVGEI 136
                  DDD KANLVRF    L S   KD RGWLL+P+ LA D+ +KGGA SCVS+HVGEI
Sbjct:    68 DLKVYDDDDKANLVRFGLASL-SPARKDDRGWLLDPVILARDSELKGGAASCVSIHVGEI 126

Query:   137 QPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAH 196
             +PG LRGNHRH+T NETFVIWGAKTKFRLEN+++D KGYAEV++G DEVA+A S  GTAH
Sbjct:   127 RPGGLRGNHRHHTCNETFVIWGAKTKFRLENHEVD-KGYAEVLIGEDEVAVAVSQSGTAH 185

Query:   197 ALVNADLIHSTFFIGCQDGVINNNASTSDFNVWKDL 232
             ALVN D + STFFIGCQD +  NN+STSD+ VW DL
Sbjct:   186 ALVNVDPVRSTFFIGCQDHM-QNNSSTSDYKVWNDL 220


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      232       232   0.00085  113 3  11 22  0.41    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  202 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.30u 0.08s 20.38t   Elapsed:  00:00:01
  Total cpu time:  20.30u 0.08s 20.38t   Elapsed:  00:00:01
  Start:  Sat May 11 06:38:22 2013   End:  Sat May 11 06:38:23 2013

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