BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026815
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 137 QPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAH 196
+PG +GNH H+T NE F++ K R ++D E V D++ + P G H
Sbjct: 280 KPGITKGNHWHHTKNEKFLVVSGKGVIRFR--HVNDDEIIEYYVSGDKLEVVDIPVGYTH 337
Query: 197 ALVN 200
+ N
Sbjct: 338 NIEN 341
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 137 QPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTAH 196
+PG +GNH H+T NE F++ K R ++D E V D++ + P G H
Sbjct: 280 KPGITKGNHWHHTKNEKFLVVSGKGVIRFR--HVNDDEIIEYYVSGDKLEVVDIPVGYTH 337
Query: 197 ALVN 200
+ N
Sbjct: 338 NIEN 341
>pdb|1COM|A Chain A, The Monofunctional Chorismate Mutase From Bacillus
Subtilis: Structure Determination Of Chorismate Mutase
And Its Complexes With A Transition State Analog And
Prephenate, And Implications On The Mechanism Of
Enzymatic Reaction
pdb|1COM|B Chain B, The Monofunctional Chorismate Mutase From Bacillus
Subtilis: Structure Determination Of Chorismate Mutase
And Its Complexes With A Transition State Analog And
Prephenate, And Implications On The Mechanism Of
Enzymatic Reaction
pdb|1COM|C Chain C, The Monofunctional Chorismate Mutase From Bacillus
Subtilis: Structure Determination Of Chorismate Mutase
And Its Complexes With A Transition State Analog And
Prephenate, And Implications On The Mechanism Of
Enzymatic Reaction
pdb|1COM|D Chain D, The Monofunctional Chorismate Mutase From Bacillus
Subtilis: Structure Determination Of Chorismate Mutase
And Its Complexes With A Transition State Analog And
Prephenate, And Implications On The Mechanism Of
Enzymatic Reaction
pdb|1COM|E Chain E, The Monofunctional Chorismate Mutase From Bacillus
Subtilis: Structure Determination Of Chorismate Mutase
And Its Complexes With A Transition State Analog And
Prephenate, And Implications On The Mechanism Of
Enzymatic Reaction
pdb|1COM|F Chain F, The Monofunctional Chorismate Mutase From Bacillus
Subtilis: Structure Determination Of Chorismate Mutase
And Its Complexes With A Transition State Analog And
Prephenate, And Implications On The Mechanism Of
Enzymatic Reaction
pdb|1COM|G Chain G, The Monofunctional Chorismate Mutase From Bacillus
Subtilis: Structure Determination Of Chorismate Mutase
And Its Complexes With A Transition State Analog And
Prephenate, And Implications On The Mechanism Of
Enzymatic Reaction
pdb|1COM|H Chain H, The Monofunctional Chorismate Mutase From Bacillus
Subtilis: Structure Determination Of Chorismate Mutase
And Its Complexes With A Transition State Analog And
Prephenate, And Implications On The Mechanism Of
Enzymatic Reaction
pdb|1COM|I Chain I, The Monofunctional Chorismate Mutase From Bacillus
Subtilis: Structure Determination Of Chorismate Mutase
And Its Complexes With A Transition State Analog And
Prephenate, And Implications On The Mechanism Of
Enzymatic Reaction
pdb|1COM|J Chain J, The Monofunctional Chorismate Mutase From Bacillus
Subtilis: Structure Determination Of Chorismate Mutase
And Its Complexes With A Transition State Analog And
Prephenate, And Implications On The Mechanism Of
Enzymatic Reaction
pdb|1COM|K Chain K, The Monofunctional Chorismate Mutase From Bacillus
Subtilis: Structure Determination Of Chorismate Mutase
And Its Complexes With A Transition State Analog And
Prephenate, And Implications On The Mechanism Of
Enzymatic Reaction
pdb|1COM|L Chain L, The Monofunctional Chorismate Mutase From Bacillus
Subtilis: Structure Determination Of Chorismate Mutase
And Its Complexes With A Transition State Analog And
Prephenate, And Implications On The Mechanism Of
Enzymatic Reaction
pdb|2CHS|A Chain A, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHS|B Chain B, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHS|C Chain C, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHS|D Chain D, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHS|E Chain E, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHS|F Chain F, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHS|G Chain G, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHS|H Chain H, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHS|I Chain I, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHS|J Chain J, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHS|K Chain K, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHS|L Chain L, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHT|A Chain A, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHT|B Chain B, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHT|C Chain C, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHT|D Chain D, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHT|E Chain E, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHT|F Chain F, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHT|G Chain G, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHT|H Chain H, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHT|I Chain I, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHT|J Chain J, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHT|K Chain K, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|2CHT|L Chain L, Crystal Structures Of The Monofunctional Chorismate Mutase
From Bacillus Subtilis And Its Complex With A Transition
State Analog
pdb|1DBF|A Chain A, Chorismate Mutase From Bacillus Subtilis At 1.30 Angstrom
pdb|1DBF|B Chain B, Chorismate Mutase From Bacillus Subtilis At 1.30 Angstrom
pdb|1DBF|C Chain C, Chorismate Mutase From Bacillus Subtilis At 1.30 Angstrom
Length = 127
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 60 LQHSSSQFE-LNKNNHEKWSSTKDDDVKANLVRFKSDH---LPSLILKDRRGWLLNPISL 115
LQ + E + + NH TK +DV L+ D P+ +++ GW P++
Sbjct: 21 LQKTKQLLEKIIEENH-----TKPEDVVQMLLSATPDLHAVFPAKAVRELSGWQYVPVTC 75
Query: 116 AIDAGVKGGAVSCVSLHVGEIQPGALRGNHRHYTLNETFVI 156
+ V GG C+ + + +Q + RH L + V+
Sbjct: 76 MQEMDVTGGLKKCIRVMMT-VQTDVPQDQIRHVYLEKAVVL 115
>pdb|1DY8|A Chain A, Inhibition Of The Hepatitis C Virus Ns34A PROTEASE. THE
CRYSTAL Structures Of Two Protease-Inhibitor Complexes
(Inhibitor Ii)
pdb|1DY8|B Chain B, Inhibition Of The Hepatitis C Virus Ns34A PROTEASE. THE
CRYSTAL Structures Of Two Protease-Inhibitor Complexes
(Inhibitor Ii)
pdb|1DY9|A Chain A, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(inhibitor I)
pdb|1DY9|B Chain B, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(inhibitor I)
pdb|1DXP|A Chain A, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(apo Structure)
pdb|1DXP|B Chain B, Inhibition Of The Hepatitis C Virus Ns3/4a Protease. The
Crystal Structures Of Two Protease-inhibitor Complexes
(apo Structure)
pdb|1W3C|A Chain A, Crystal Structure Of The Hepatitis C Virus Ns3 Protease In
Complex With A Peptidomimetic Inhibitor
pdb|1W3C|B Chain B, Crystal Structure Of The Hepatitis C Virus Ns3 Protease In
Complex With A Peptidomimetic Inhibitor
pdb|3OYP|A Chain A, Hcv Ns34A IN COMPLEX WITH LIGAND 3
pdb|3OYP|B Chain B, Hcv Ns34A IN COMPLEX WITH LIGAND 3
Length = 187
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 89 LVRFKSDHLPSLILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHV 133
LV +D +P D RG LL+P ++ G GG + C S HV
Sbjct: 106 LVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHV 150
>pdb|4I31|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
COMPOUND 4
pdb|4I31|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
COMPOUND 4
Length = 187
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 89 LVRFKSDHLPSLILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHV 133
LV +D +P D RG LL+P ++ G GG + C S HV
Sbjct: 107 LVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHV 151
>pdb|4I33|A Chain A, Crystal Structure Of Hcv Ns34A R155K PROTEASE COMPLEXED
WITH COMPOUND 4
pdb|4I33|B Chain B, Crystal Structure Of Hcv Ns34A R155K PROTEASE COMPLEXED
WITH COMPOUND 4
Length = 187
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 89 LVRFKSDHLPSLILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHV 133
LV +D +P D RG LL+P ++ G GG + C S HV
Sbjct: 107 LVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHV 151
>pdb|3P8N|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
BI 201335
pdb|3P8N|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
BI 201335
pdb|3P8O|A Chain A, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
DES-Bromine Analogue Of Bi 201335
pdb|3P8O|B Chain B, Crystal Structure Of Hcv Ns3NS4A PROTEASE COMPLEXED WITH
DES-Bromine Analogue Of Bi 201335
Length = 186
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 89 LVRFKSDHLPSLILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHV 133
LV +D +P D RG LL+P ++ G GG + C S HV
Sbjct: 106 LVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHV 150
>pdb|4I32|A Chain A, Crystal Structure Of Hcv Ns34A D168V PROTEASE COMPLEXED
WITH COMPOUND 4
pdb|4I32|B Chain B, Crystal Structure Of Hcv Ns34A D168V PROTEASE COMPLEXED
WITH COMPOUND 4
Length = 187
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 89 LVRFKSDHLPSLILKDRRGWLLNPISLAIDAGVKGGAVSCVSLHV 133
LV +D +P D RG LL+P ++ G GG + C S HV
Sbjct: 107 LVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHV 151
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 136 IQPGALRGNHRHYTLNETFVIWGAKTKFRLENNQIDDKGYAEVIVGADEVAIAASPQGTA 195
++PGA+R H H E + +T+ L + + G E I D+ + P+G
Sbjct: 59 LEPGAIRELHWHANAAEWAYVMEGRTRITLTSPE----GKVE-IADVDKGGLWYFPRGWG 113
Query: 196 HALVNADLIHSTFFIGCQDGVINNNASTS 224
H++ + F + DG + A+ S
Sbjct: 114 HSIEGIGPDTAKFLLVFNDGTFSEGATFS 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,271,445
Number of Sequences: 62578
Number of extensions: 284866
Number of successful extensions: 638
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 9
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)